Citrus Sinensis ID: 021372

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEIKL
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccEEcccccccccccHHHHHHHHHHccccEEcccccccccccHHHHHHHHcccEEEcccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccEEEEEccccccccEEEcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccEEEEcccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccEEcccccccccccEEEEEccHHcccccccccccccccHHcccccccccccHHHcEEEEcccHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHccEEEEEEcccHHHccccHHHHHHHHHHHcccEEEcccccccccHHHHHHHHHcccEEccccHHHHHHHHcHHHHHHHHHHHcccEccEcccccccHHHHHHHHHHHcccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEccccEEEEEEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mdasmtmsksvtttspglfvgrgkgilrssqcsfmvgsrtvnfprqvvagvggklkrrcggggalkvtCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVkladesvcigeapssqsyllIPNVLSAAISRgctmlhpgygflaeNAVFVEMCREHginfigpnpdsirimgdKSTARetmknagvptvpgsdgllqSTEEAVKLADELGFPVMIkataggggrgmrlakePDEFVKLLQQAKSEAAAAFGNDGVYLEKyvqnprhiEFQVLAdkygnvvhfgerdcsIQVIEIhthteikl
Flexible Loop (DISEMBL)
mdasmtmsksvtttspglfvgrgKGILRSSQCSFmvgsrtvnfprqvvagvggklkrrcggggalkvtcrqekilvanrGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGinfigpnpdsiRIMGDKSTARETMKnagvptvpgsdgLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEihthteikl
Low Complexity Region (SEG)
MDAsmtmsksvtttsPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAgvggklkrrcggggALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEIKL
Disordered region (IsUnstruct)
****************GLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN**************************************VKLADELGFPVMIKATAGG*************FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH*****
Disordered Region (DISOPRED)
**************SP*L****************************************************QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT****
Disordered Region (DISEMBL)
************TTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEIKL
Disordered Region (DISPRO)
*****TMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPR**********************TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEIKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
B9HBA8	528	Biotin carboxylase 1, chl	yes	no	0.942	0.558	0.853	1e-146
B9N843	526	Biotin carboxylase 2, chl	no	no	0.942	0.560	0.851	1e-146
O04983	537	Biotin carboxylase, chlor	yes	no	0.952	0.554	0.801	1e-139
Q06862	447	Biotin carboxylase OS=Nos	yes	no	0.734	0.514	0.656	2e-93
P49787	450	Biotin carboxylase 1 OS=B	yes	no	0.734	0.511	0.591	4e-75
P37798	449	Biotin carboxylase OS=Pse	yes	no	0.734	0.512	0.571	3e-70
Q42777	731	Methylcrotonoyl-CoA carbo	no	no	0.741	0.317	0.543	6e-69
O27939	491	Pyruvate carboxylase subu	yes	no	0.731	0.466	0.537	5e-68
Q2QMG2	737	Methylcrotonoyl-CoA carbo	yes	no	0.734	0.312	0.521	8e-68
D3DJ42	472	2-oxoglutarate carboxylas	yes	no	0.731	0.485	0.556	2e-66

>sp|B9HBA8|ACCC1_POPTR Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1

 Score =  518 bits (1333), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/301 (85%), Positives = 275/301 (91%), Gaps = 6/301 (1%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCG 60
           M+A++ + KSVT+T PGLF+G+  GI RSSQCSFM+G++ VNFPRQ          +   
Sbjct: 1   MEATLPVCKSVTST-PGLFMGKTSGI-RSSQCSFMMGNK-VNFPRQRAQTAHVHCAK--- 54

Query: 61  GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
            GGAL VTCR EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI
Sbjct: 55  NGGALGVTCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 114

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
           GEAPSSQSYL+IPNVLSAAISR CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR
Sbjct: 115 GEAPSSQSYLVIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 174

Query: 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240
           +MGDKSTARETMK AGVPTVPGSDGLLQSTEE V+LA+E+G+PVMIKATAGGGGRGMRLA
Sbjct: 175 VMGDKSTARETMKKAGVPTVPGSDGLLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLA 234

Query: 241 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI 300
           KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK+GNVVHFGERDCSI
Sbjct: 235 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKFGNVVHFGERDCSI 294

Query: 301 Q 301
           Q
Sbjct: 295 Q 295

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
Populus trichocarpa (taxid: 3694)
EC: 6EC: .EC: 4EC: .EC: 1EC: .EC: 2

>sp|B9N843|ACCC2_POPTR Biotin carboxylase 2, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_673504 PE=2 SV=1

 Score =  517 bits (1332), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/303 (85%), Positives = 274/303 (90%), Gaps = 8/303 (2%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCG 60
           M+A++ + KSVT+T PGLF+ R  GI R+SQCSFMVG++ VNFPRQ      G     C 
Sbjct: 1   MEATLPVCKSVTST-PGLFMKRNSGI-RNSQCSFMVGTK-VNFPRQRTQATQGN---HCA 54

Query: 61  --GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 118
              GGAL VTCR EKILVANRGEIAVRVIRTAHE+GIPCVAVYSTIDKDALHVKLADESV
Sbjct: 55  KKNGGALGVTCRTEKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESV 114

Query: 119 CIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178
           CIGEAPS+QSYL+I NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS
Sbjct: 115 CIGEAPSNQSYLVIQNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 174

Query: 179 IRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           IR+MGDKSTARETMK A VPTVPGSDGLLQSTEEAVKLA E+G+PVMIKATAGGGGRGMR
Sbjct: 175 IRVMGDKSTARETMKKANVPTVPGSDGLLQSTEEAVKLASEIGYPVMIKATAGGGGRGMR 234

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298
           LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK+GNVVHFGERDC
Sbjct: 235 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKFGNVVHFGERDC 294

Query: 299 SIQ 301
           SIQ
Sbjct: 295 SIQ 297

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Populus trichocarpa (taxid: 3694)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|O04983|ACCC_ARATH Biotin carboxylase, chloroplastic OS=Arabidopsis thaliana GN=CAC2 PE=1 SV=1

 Score =  493 bits (1270), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/307 (80%), Positives = 271/307 (88%), Gaps = 9/307 (2%)

Query: 1   MDASMTMSKSVTTTSPGLFVGR--GKGILRSSQCSFMVGSRTVNFPRQVVAGVG---GKL 55
           MDASM  +    T+ P L +G+  G G++RSS C+ M+ S+ VNFPRQ    +     KL
Sbjct: 1   MDASMITNSKSITSPPSLALGKSGGGGVIRSSLCNLMMPSK-VNFPRQRTQTLKVSQKKL 59

Query: 56  KRRCGGGGALKVTCRQ-EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA 114
           KR   GG  L VTC   +KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA
Sbjct: 60  KRATSGG--LGVTCSGGDKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA 117

Query: 115 DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP 174
           DE+VCIGEAPS+QSYL+IPNVLSAAISRGCTMLHPGYGFL+ENA+FVEMCR+HGINFIGP
Sbjct: 118 DEAVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLSENALFVEMCRDHGINFIGP 177

Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
           NPDSIR+MGDK+TARETMKNAGVPTVPGSDGLLQSTEEAV++A+E+GFPVMIKATAGGGG
Sbjct: 178 NPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQSTEEAVRVANEIGFPVMIKATAGGGG 237

Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294
           RGMRLAKEP EFVKLLQQAKSEAAAAFGNDG YLEK+VQNPRHIEFQVLADK+GNVVHFG
Sbjct: 238 RGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEKFVQNPRHIEFQVLADKFGNVVHFG 297

Query: 295 ERDCSIQ 301
           ERDCSIQ
Sbjct: 298 ERDCSIQ 304

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q06862|ACCC_NOSS1 Biotin carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accC PE=3 SV=1

 Score =  342 bits (878), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 151/230 (65%), Positives = 198/230 (86%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KIL+ANRGEIA+R++R   EMGI  +AV+ST+D++ALHV+LADE+VCIGE  S++SYL 
Sbjct: 4   DKILIANRGEIALRILRACEEMGIATIAVHSTVDRNALHVQLADEAVCIGEPASAKSYLN 63

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IPN+++AA++R  + +HPGYGFL+ENA F E+C +H I FIGP P++IR+MGDKSTA+ET
Sbjct: 64  IPNIIAAALTRNASAIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKET 123

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M+ AGVPTVPGS+GL+++ +E ++LA ++G+PVMIKATAGGGGRGMRL + PDEFVKL  
Sbjct: 124 MQKAGVPTVPGSEGLVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFL 183

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A+ EA AAFGN GVY+EK+++ PRHIEFQ+LAD YGNV+H GERDCSIQ
Sbjct: 184 AAQGEAGAAFGNAGVYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQ 233

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P49787|ACCC1_BACSU Biotin carboxylase 1 OS=Bacillus subtilis (strain 168) GN=accC1 PE=3 SV=3

 Score =  281 bits (720), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 176/230 (76%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +K+L+ANRGEIAVR+IR   E+GI  VAVYS  DKDALHV++ADE+ CIG   S  SYL 
Sbjct: 3   KKLLIANRGEIAVRIIRACRELGIETVAVYSEADKDALHVQMADEAFCIGPKASKDSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           + N++S A   G   +HPGYGFLAENA F E+C E  + F+GP+ D+I  MG K  ARET
Sbjct: 63  VTNIVSVAKLTGTDAIHPGYGFLAENADFAELCEEVNVTFVGPSADAISKMGTKDVARET 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP VPGS G++++ EEAV LA+E+G+PV+IKATAGGGG+G+R+A+  +E +  ++
Sbjct: 123 MKQAGVPIVPGSQGIIENVEEAVSLANEIGYPVIIKATAGGGGKGIRVARTEEELINGIK 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             + EAA AFGN GVY+EKY+++ RH+E QVLAD YGN +H GERDCSIQ
Sbjct: 183 ITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNYGNTIHLGERDCSIQ 232

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|P37798|ACCC_PSEAE Biotin carboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=accC PE=1 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 173/231 (74%), Gaps = 1/231 (0%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           EK+L+ANRGEIA+R++R   E+GI  VAV+ST D++ +H+ LADESVCIG AP++QSYL 
Sbjct: 3   EKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQ 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP +++AA   G T +HPGYGFLAENA F E     G  F+GP  + IR+MGDK +A++ 
Sbjct: 63  IPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122

Query: 192 MKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVPTVPGSDG L   EE A+ +A E+G+PV+IKA  GGGGRGMR+  +  E +K  
Sbjct: 123 MKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSA 182

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           +  ++EA AAFGN  VYLEK++ NPRH+E QVL+D  GN +H G+RDCS+Q
Sbjct: 183 KLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQ 233

This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 2

>sp|Q42777|MCCA_SOYBN Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2

 Score =  261 bits (666), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 161/232 (69%)

Query: 70  RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSY 129
           R EKILVANRGEIA R+ RTA  +GI  VAVYS  D+D+LHV  ADE++ IG  P+  SY
Sbjct: 32  RIEKILVANRGEIACRITRTARRLGIQTVAVYSDADRDSLHVATADEAIRIGPPPARLSY 91

Query: 130 LLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTAR 189
           L   +++ AAI  G   +HPGYGFL+E+A F ++C E G+ FIGP   +IR MGDKS ++
Sbjct: 92  LNGASIVDAAIRSGAQAIHPGYGFLSESADFAKLCEESGLTFIGPPASAIRDMGDKSASK 151

Query: 190 ETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249
             M  AGVP VPG  G  Q  E+    AD +G+PV+IK T GGGG+GMR+   PDEFV+ 
Sbjct: 152 RIMGAAGVPLVPGYHGYDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVES 211

Query: 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              A+ EAAA+FG + + LEKY+  PRHIE Q+  DK+GNV+H  ERDCS+Q
Sbjct: 212 FLAAQREAAASFGVNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQ 263

Glycine max (taxid: 3847)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|O27939|PYCA_METTH Pyruvate carboxylase subunit A OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=pycA PE=1 SV=1

 Score =  258 bits (658), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 161/229 (70%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KILVANRGEIA+RV+R   E+GI  VAVYS  DK+AL  + ADE+  IG+   SQSYL I
Sbjct: 4   KILVANRGEIAIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSYLRI 63

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             +L  A   G   +HPGYGFLAEN    E C + GI  IGP    I  MGDK T+++ M
Sbjct: 64  DRILEVAEKAGAEAIHPGYGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITSKKLM 123

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
           K AGVP +PG+D  +   +EA ++AD +G+PV+IKA+AGGGG GMR   E DE ++ ++ 
Sbjct: 124 KKAGVPVIPGTDQGVSDPDEAARIADSIGYPVIIKASAGGGGIGMRAVYEEDELIRAMES 183

Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +S AA+AFG+  VY+EKY++ PRHIEFQV+AD+ GNV+H  +R+CSIQ
Sbjct: 184 TQSVAASAFGDPTVYIEKYLERPRHIEFQVMADESGNVIHLADRECSIQ 232

Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q2QMG2|MCCA_ORYSJ Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=MCCA PE=2 SV=2

 Score =  257 bits (657), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 164/230 (71%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           EK+LVANRGEIA RV+RTA  +GIP VAVYS  D+ ALHV+ ADE+V +G  P+ +SYL 
Sbjct: 40  EKVLVANRGEIACRVMRTARRLGIPTVAVYSDADRGALHVRAADEAVRLGPPPARESYLN 99

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
              ++ AA+  G   +HPGYGFL+E+A F ++C+  G+ FIGP P +IR MGDKS ++  
Sbjct: 100 ASAIVDAALRTGAKAIHPGYGFLSESADFAQLCKAEGLTFIGPPPSAIRDMGDKSASKRI 159

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M  AGVP VPG  G  Q  E     A+++G+PV+IK T GGGG+GMR+ + P++FV  + 
Sbjct: 160 MGAAGVPLVPGYHGAEQDIELLKLEANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVL 219

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A+ EAAA+FG + + +EKY+  PRHIE Q+  D++GNV+H  ERDCS+Q
Sbjct: 220 SAQREAAASFGINTLLVEKYITQPRHIEVQIFGDQHGNVIHLYERDCSLQ 269

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

>sp|D3DJ42|2OCS_HYDTT 2-oxoglutarate carboxylase small subunit OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=cfiB PE=1 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 168/230 (73%), Gaps = 1/230 (0%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +K+LVANRGEIA RVIR   E+GI  VA+Y+ I+  A HVK+ADE+  IG  P   +YL 
Sbjct: 3   KKVLVANRGEIACRVIRACKELGIQTVAIYNEIESTARHVKMADEAYMIGVNPLD-TYLN 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
              ++  A+  G   +HPGYGFLAEN  F  +C E GI FIGP+   I +MGDK+ ++E 
Sbjct: 62  AERIVDLALEVGAEAIHPGYGFLAENEHFARLCEEKGITFIGPHWKVIELMGDKARSKEV 121

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVPTVPGSDG+L+  EEA ++A E+G+PV++KA+AGGGGRG+R+ +  +E V+  +
Sbjct: 122 MKRAGVPTVPGSDGILKDVEEAKRIAKEIGYPVLLKASAGGGGRGIRICRNEEELVRNYE 181

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A +EA  AFG   + LEKY++NP+HIEFQVL DKYGNV+H GERDCSIQ
Sbjct: 182 NAYNEAVKAFGRGDLLLEKYIENPKHIEFQVLGDKYGNVIHLGERDCSIQ 231

Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) (taxid: 608538)

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
145910320	535	chloroplast biotin carboxylase [Gossypiu	0.945	0.553	0.857	1e-146
307566892	536	acetyl-CoA carboxylase BC subunit [Jatro	0.948	0.554	0.840	1e-145
380853844	536	acetyl-CoA carboxylase [Nicotiana tabacu	0.945	0.552	0.846	1e-145
238837063	536	heteromeric acetyl-CoA biotin carboxylas	0.948	0.554	0.833	1e-145
224087339	528	predicted protein [Populus trichocarpa]	0.942	0.558	0.853	1e-144
239759398	533	biotin carboxylase [Camellia oleifera]	0.942	0.553	0.848	1e-144
224118754	526	predicted protein [Populus trichocarpa]	0.942	0.560	0.851	1e-144
870726	536	biotin carboxylase subunit [Nicotiana ta	0.945	0.552	0.846	1e-144
297736021	587	unnamed protein product [Vitis vinifera]	0.942	0.502	0.848	1e-144
255557562	541	Biotin caboxylase subunit (BC) of Het-AC	0.958	0.554	0.834	1e-144

>gi|145910320|gb|ABP98813.1| chloroplast biotin carboxylase [Gossypium hirsutum]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/302 (85%), Positives = 275/302 (91%), Gaps = 6/302 (1%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKR-RC 59
           MDAS+TM KSVT+  PGLF+GR + ++RSSQC+FMVGSR +N PRQ       + K  RC
Sbjct: 3   MDASLTMCKSVTS-PPGLFLGRSR-VIRSSQCTFMVGSR-INLPRQKAQSTQVRCKSSRC 59

Query: 60  GGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC 119
           GG  AL   CR EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC
Sbjct: 60  GG--ALGAKCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVC 117

Query: 120 IGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSI 179
           IGEAPSSQSYLLIPNVLSAAISR CTMLHPGYGFL+ENAVFVEMCR+H INFIGPNPDSI
Sbjct: 118 IGEAPSSQSYLLIPNVLSAAISRNCTMLHPGYGFLSENAVFVEMCRDHRINFIGPNPDSI 177

Query: 180 RIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239
           R+MGDKSTARETMKNAGVPTVPGSDGLLQSTEEA+KLA E+GFPVMIKATAGGGGRGMRL
Sbjct: 178 RVMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAIKLAHEIGFPVMIKATAGGGGRGMRL 237

Query: 240 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299
           +KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQ LADKYGNVVHFGERDCS
Sbjct: 238 SKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQALADKYGNVVHFGERDCS 297

Query: 300 IQ 301
           IQ
Sbjct: 298 IQ 299

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307566892|gb|ADN52612.1| acetyl-CoA carboxylase BC subunit [Jatropha curcas]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/307 (84%), Positives = 278/307 (90%), Gaps = 10/307 (3%)

Query: 1   MDASMTMSK---SVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKR 57
           M+A++ + K   +V +T+PGL  GR  GI  SSQCSFMVGS+ VNFPRQ +    G++  
Sbjct: 1   MEATLPICKPKSAVISTTPGLLTGRSSGI-GSSQCSFMVGSK-VNFPRQRIRA--GRVSH 56

Query: 58  RCG---GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA 114
           + G    GGA+ V CR +KIL+ANRGEIAVRVIRTAHE+GIPCVAVYSTIDKDALHVKLA
Sbjct: 57  KAGKSSNGGAIGVKCRADKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLA 116

Query: 115 DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP 174
           DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP
Sbjct: 117 DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP 176

Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
           NPDSIR+MGDKSTARETMKNAGVPTVPGSDGLLQ+TEEAVKLA E+GFPVMIKATAGGGG
Sbjct: 177 NPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQNTEEAVKLAHEIGFPVMIKATAGGGG 236

Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294
           RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQVLADKYGNVVHFG
Sbjct: 237 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFG 296

Query: 295 ERDCSIQ 301
           ERDCSIQ
Sbjct: 297 ERDCSIQ 303

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380853844|gb|AFE88229.1| acetyl-CoA carboxylase [Nicotiana tabacum]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/306 (84%), Positives = 274/306 (89%), Gaps = 10/306 (3%)

Query: 1   MDASMTMS---KSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAG--VGGKL 55
           MD++   S   KS    +PGLF+GR  GI RSSQCSFM G+R +NFPRQ      V  K 
Sbjct: 1   MDSAALTSVCGKSALRFTPGLFLGRTNGI-RSSQCSFMAGNR-INFPRQRAQAYRVSTKS 58

Query: 56  KRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD 115
            +R   GGAL  TCR EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD
Sbjct: 59  SKR---GGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD 115

Query: 116 ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN 175
           ESVCIGEAPS+QSYL+IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN
Sbjct: 116 ESVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN 175

Query: 176 PDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR 235
           PDSIR+MGDKSTAR+TMKNAGVPTVPGSDGLLQSTEE V+LA+E+G+PVMIKATAGGGGR
Sbjct: 176 PDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQSTEEGVRLAEEIGYPVMIKATAGGGGR 235

Query: 236 GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
           GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE
Sbjct: 236 GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295

Query: 296 RDCSIQ 301
           RDCSIQ
Sbjct: 296 RDCSIQ 301

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238837063|gb|ACR61637.1| heteromeric acetyl-CoA biotin carboxylase [Jatropha curcas]

 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/307 (83%), Positives = 277/307 (90%), Gaps = 10/307 (3%)

Query: 1   MDASMTMSK---SVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKR 57
           M+A++ + K   +V +T+PGL  GR  GI  SSQCSFMVGS+ VNFPRQ +    G++  
Sbjct: 1   MEATLPICKPKSAVISTTPGLLTGRSSGI-GSSQCSFMVGSK-VNFPRQRIRA--GRVSH 56

Query: 58  RCG---GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA 114
           + G    GGA+ V CR +KIL+ANRGEIAVR+IRTAHE+GIPCVAVYSTIDKDALHVKLA
Sbjct: 57  KAGKSSNGGAIGVKCRADKILIANRGEIAVRIIRTAHELGIPCVAVYSTIDKDALHVKLA 116

Query: 115 DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP 174
           DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM HPGYGFLAENAVFVEMCREHGINFIGP
Sbjct: 117 DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMFHPGYGFLAENAVFVEMCREHGINFIGP 176

Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
           NPDSIR+MGDKSTARETMKNAGVPTVPGSDGLLQ+TEEAVKLA E+GFPVMIKATAGGGG
Sbjct: 177 NPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQNTEEAVKLAHEIGFPVMIKATAGGGG 236

Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG 294
           RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQVLADKYGNVVHFG
Sbjct: 237 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVHFG 296

Query: 295 ERDCSIQ 301
           ERDCSIQ
Sbjct: 297 ERDCSIQ 303

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087339|ref|XP_002308127.1| predicted protein [Populus trichocarpa] gi|290463112|sp|B9HBA8.1|ACCC1_POPTR RecName: Full=Biotin carboxylase 1, chloroplastic; AltName: Full=Acetyl-CoA carboxylase subunit A 1; Short=ACC; Flags: Precursor gi|222854103|gb|EEE91650.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/301 (85%), Positives = 275/301 (91%), Gaps = 6/301 (1%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCG 60
           M+A++ + KSVT+T PGLF+G+  GI RSSQCSFM+G++ VNFPRQ          +   
Sbjct: 1   MEATLPVCKSVTST-PGLFMGKTSGI-RSSQCSFMMGNK-VNFPRQRAQTAHVHCAK--- 54

Query: 61  GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 120
            GGAL VTCR EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI
Sbjct: 55  NGGALGVTCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI 114

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
           GEAPSSQSYL+IPNVLSAAISR CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR
Sbjct: 115 GEAPSSQSYLVIPNVLSAAISRRCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 174

Query: 181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240
           +MGDKSTARETMK AGVPTVPGSDGLLQSTEE V+LA+E+G+PVMIKATAGGGGRGMRLA
Sbjct: 175 VMGDKSTARETMKKAGVPTVPGSDGLLQSTEEGVRLANEIGYPVMIKATAGGGGRGMRLA 234

Query: 241 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSI 300
           KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK+GNVVHFGERDCSI
Sbjct: 235 KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKFGNVVHFGERDCSI 294

Query: 301 Q 301
           Q
Sbjct: 295 Q 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239759398|gb|ACS14663.1| biotin carboxylase [Camellia oleifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/303 (84%), Positives = 278/303 (91%), Gaps = 8/303 (2%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVV--AGVGGKLKRR 58
           MD+++T  KSV +  PGLFVGR +GI +S QCS MVGSR VNFPRQ V  A +  K ++R
Sbjct: 1   MDSALTFCKSVHS-PPGLFVGRSRGI-QSPQCSVMVGSR-VNFPRQSVRVAQISRKSEKR 57

Query: 59  CGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 118
              GGAL  TCR EKILV NRGEIAVR+IRTAHEMGIPCVAVYSTIDKDALHVKLADESV
Sbjct: 58  ---GGALCATCRDEKILVINRGEIAVRIIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 114

Query: 119 CIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178
           CIGEAPSSQSYL+IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS
Sbjct: 115 CIGEAPSSQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 174

Query: 179 IRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           IR+M DK+TARETMKNAGVPTVPGS+GLLQ+TEEAV+L++E+GFPVMIKATAGGGGRGMR
Sbjct: 175 IRVMVDKATARETMKNAGVPTVPGSEGLLQNTEEAVRLSEEIGFPVMIKATAGGGGRGMR 234

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298
           LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQVLADK+GNVVHFGERDC
Sbjct: 235 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKFGNVVHFGERDC 294

Query: 299 SIQ 301
           SIQ
Sbjct: 295 SIQ 297

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118754|ref|XP_002331438.1| predicted protein [Populus trichocarpa] gi|290463113|sp|B9N843.1|ACCC2_POPTR RecName: Full=Biotin carboxylase 2, chloroplastic; AltName: Full=Acetyl-CoA carboxylase subunit A 2; Short=ACC; Flags: Precursor gi|222873652|gb|EEF10783.1| predicted protein [Populus trichocarpa]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/303 (85%), Positives = 274/303 (90%), Gaps = 8/303 (2%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAGVGGKLKRRCG 60
           M+A++ + KSVT+T PGLF+ R  GI R+SQCSFMVG++ VNFPRQ      G     C 
Sbjct: 1   MEATLPVCKSVTST-PGLFMKRNSGI-RNSQCSFMVGTK-VNFPRQRTQATQGN---HCA 54

Query: 61  --GGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 118
              GGAL VTCR EKILVANRGEIAVRVIRTAHE+GIPCVAVYSTIDKDALHVKLADESV
Sbjct: 55  KKNGGALGVTCRTEKILVANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESV 114

Query: 119 CIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178
           CIGEAPS+QSYL+I NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS
Sbjct: 115 CIGEAPSNQSYLVIQNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 174

Query: 179 IRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           IR+MGDKSTARETMK A VPTVPGSDGLLQSTEEAVKLA E+G+PVMIKATAGGGGRGMR
Sbjct: 175 IRVMGDKSTARETMKKANVPTVPGSDGLLQSTEEAVKLASEIGYPVMIKATAGGGGRGMR 234

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298
           LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK+GNVVHFGERDC
Sbjct: 235 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKFGNVVHFGERDC 294

Query: 299 SIQ 301
           SIQ
Sbjct: 295 SIQ 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|870726|gb|AAC41659.1| biotin carboxylase subunit [Nicotiana tabacum] gi|1582354|prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 10/306 (3%)

Query: 1   MDASMTMS---KSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQVVAG--VGGKL 55
           MD++   S   KS    +PGLF+GR  GI RSSQCSFM G+R +NFPRQ      V  K 
Sbjct: 1   MDSAALTSVCGKSALRFTPGLFLGRTNGI-RSSQCSFMAGNR-INFPRQRAQAYRVSTKS 58

Query: 56  KRRCGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD 115
             R   GGAL  TCR EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD
Sbjct: 59  STR---GGALAATCRAEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD 115

Query: 116 ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN 175
           ESVCIGEAPS+QSYL+IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN
Sbjct: 116 ESVCIGEAPSNQSYLVIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN 175

Query: 176 PDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR 235
           PDSIR+MGDKSTAR+TMKNAGVPTVPGSDGLLQSTEE V+LA+E+G+PVMIKATAGGGGR
Sbjct: 176 PDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQSTEEGVRLAEEIGYPVMIKATAGGGGR 235

Query: 236 GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
           GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE
Sbjct: 236 GMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295

Query: 296 RDCSIQ 301
           RDCSIQ
Sbjct: 296 RDCSIQ 301

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736021|emb|CBI24059.3| unnamed protein product [Vitis vinifera]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 257/303 (84%), Positives = 276/303 (91%), Gaps = 8/303 (2%)

Query: 1   MDASMTMSKSVTTTSPGLFVGRGKGILRSSQCSFMVGSRTVNFPRQV--VAGVGGKLKRR 58
           M+ +M + KSV +  PGLFVG  +GI RSSQCSFMVG + VNFPRQV  VA V  K K+ 
Sbjct: 63  METTMNVCKSVIS-PPGLFVGTPQGI-RSSQCSFMVGKK-VNFPRQVAQVARVRSKSKKH 119

Query: 59  CGGGGALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV 118
              GGAL  TCR +KILVANRGEIAVRVIRTAHEMGIPCVAVYSTID+DALHVKLADESV
Sbjct: 120 ---GGALGATCRNDKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDRDALHVKLADESV 176

Query: 119 CIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178
           CIGEAPSSQSYLLIPNVLSAAIS GCTMLHPGYGFLAENA FVEMCREHGINFIGPNPDS
Sbjct: 177 CIGEAPSSQSYLLIPNVLSAAISHGCTMLHPGYGFLAENATFVEMCREHGINFIGPNPDS 236

Query: 179 IRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           IR+MGDKSTAR+TMKNAGVPTVPGS+GLL+STEE +KLA+E+G+PVMIKATAGGGGRGMR
Sbjct: 237 IRVMGDKSTARDTMKNAGVPTVPGSEGLLKSTEEGIKLANEIGYPVMIKATAGGGGRGMR 296

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298
           LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQVLADK+GNVVHFGERDC
Sbjct: 297 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKFGNVVHFGERDC 356

Query: 299 SIQ 301
           SIQ
Sbjct: 357 SIQ 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557562|ref|XP_002519811.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis] gi|223541050|gb|EEF42607.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/309 (83%), Positives = 280/309 (90%), Gaps = 9/309 (2%)

Query: 1   MDASMTMSKSVTTT--SPGLFVGRG---KGILRSSQCSFMVGSRTVNFPRQ-VVAGVGGK 54
           M+A++ + KS+ TT  SPGLF+ R    +GI  SSQCSFMVG++ +NF RQ +      K
Sbjct: 1   MEAALPVHKSILTTPKSPGLFMRRNGSIRGIKGSSQCSFMVGTK-LNFQRQKLFIQSAAK 59

Query: 55  LKRRCGGGG--ALKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK 112
           +  + GGGG  AL+V+CR EKIL+ANRGEIAVRVIRTAHE+GIPCVAVYSTIDKDALHVK
Sbjct: 60  VTHKEGGGGGAALRVSCRAEKILIANRGEIAVRVIRTAHELGIPCVAVYSTIDKDALHVK 119

Query: 113 LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI 172
           LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMC+EHGINFI
Sbjct: 120 LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCKEHGINFI 179

Query: 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
           GPNPDSIR+MGDKSTARETMKNAGVPTVPGS+GLLQSTEEAVKLA E+GFPVMIKATAGG
Sbjct: 180 GPNPDSIRVMGDKSTARETMKNAGVPTVPGSEGLLQSTEEAVKLAHEIGFPVMIKATAGG 239

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH 292
           GGRGMRLAKEP EFVKLLQQAKSEAAAAFGNDGVYLEKY+QNPRHIEFQVLADKYGNVVH
Sbjct: 240 GGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEKYIQNPRHIEFQVLADKYGNVVH 299

Query: 293 FGERDCSIQ 301
           FGERDCSIQ
Sbjct: 300 FGERDCSIQ 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TIGR_CMR|BA_4408	450	BA_4408 "acetyl-CoA carboxylas	0.734	0.511	0.578	1.1e-73
TIGR_CMR|SPO_1010	449	SPO_1010 "acetyl-CoA carboxyla	0.734	0.512	0.595	1.2e-72
TIGR_CMR|CHY_1998	449	CHY_1998 "acetyl-CoA carboxyla	0.734	0.512	0.604	2e-72
TIGR_CMR|GSU_2019	446	GSU_2019 "acetyl-CoA carboxyla	0.731	0.513	0.589	5.5e-70
TIGR_CMR|CJE_1482	443	CJE_1482 "acetyl-CoA carboxyla	0.734	0.519	0.547	1.5e-67
TIGR_CMR|CHY_0918	517	CHY_0918 "acetyl-CoA carboxyla	0.728	0.441	0.549	2.4e-67
UNIPROTKB|Q9KV62	447	VC_0295 "Acetyl-CoA carboxylas	0.734	0.514	0.545	1.2e-65
TIGR_CMR|VC_0295	447	VC_0295 "acetyl-CoA carboxylas	0.734	0.514	0.545	1.2e-65
UNIPROTKB|P24182	449	accC [Escherichia coli K-12 (t	0.734	0.512	0.541	3.7e-64
UNIPROTKB|Q487S0	448	accC "Acetyl-CoA carboxylase,	0.734	0.513	0.536	3.7e-64

TIGR_CMR|BA_4408 BA_4408 "acetyl-CoA carboxylase, biotin carboxylase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 133/230 (57%), Positives = 182/230 (79%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +K+L+ANRGEIAVR+IR   EM I  VA+YS  DK++LHV++ADE+ C+G   S +SYL 
Sbjct:     3 KKVLIANRGEIAVRIIRACKEMDIETVAIYSEADKESLHVQIADEAYCVGPTISKESYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             + N++S A   GC  +HPGYGFLAENA F E+CRE  + FIGP+P++I  MG K  AR+T
Sbjct:    63 LTNIISVAKLTGCDAIHPGYGFLAENADFAELCRECNLIFIGPSPEAISKMGTKDVARDT 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
             MK AGVP VPGS G++++TEEA++LA+++G+PV+IKATAGGGG+G+R+A+  +E VK +Q
Sbjct:   123 MKEAGVPIVPGSQGIIKNTEEAIELANQIGYPVIIKATAGGGGKGIRVARHEEELVKGIQ 182

Query:   252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
               + EA+ AFGN GVYLEKYV++ RH+E Q++AD +GN +H GERDC+IQ
Sbjct:   183 ITQQEASTAFGNPGVYLEKYVEDFRHVEIQIMADTHGNAIHLGERDCTIQ 232

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1010 SPO_1010 "acetyl-CoA carboxylase, biotin carboxylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 137/230 (59%), Positives = 172/230 (74%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +KIL+ANRGEIA+RVIR A EMGI  VAV+ST D DA+HV++ADESVCIG  P +QSYL 
Sbjct:     3 DKILIANRGEIALRVIRAAREMGIATVAVHSTADSDAMHVRMADESVCIGPPPGNQSYLS 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             +P ++SA    G   +HPGYGFL+ENA FV++  +HGI FIGP+ + IRIMGDK TA++T
Sbjct:    63 VPAIISACEITGAQAIHPGYGFLSENAGFVQIVEDHGITFIGPSAEHIRIMGDKITAKDT 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
              K  G+P VPGSDG +    EA ++ + +G+PV+IKATAGGGGRGM++A+   E      
Sbjct:   123 AKELGIPVVPGSDGGVADVAEARRVGEHIGYPVIIKATAGGGGRGMKVARNAKEMEHAFS 182

Query:   252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              A+SEA AAFGND VY+EKY+  PRHIE QV  D  GN VH GERDCS+Q
Sbjct:   183 TARSEAKAAFGNDEVYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQ 232

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1998 CHY_1998 "acetyl-CoA carboxylase, biotin carboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 139/230 (60%), Positives = 176/230 (76%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +K+LVANRGEIAVR+IR   EMGI  VAVYS  D+++LHVKLADE++CIG   S++SYL 
Sbjct:     3 KKVLVANRGEIAVRIIRALREMGISSVAVYSEADRESLHVKLADEAICIGPKESNRSYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP ++SAA+  G   +HPGYGFLAENA F E     G+ FIGP P +I +MGDK+TAR+T
Sbjct:    63 IPAIISAALVTGAEAIHPGYGFLAENAAFAEAVEASGLTFIGPPPRAIELMGDKATARQT 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
             M  AGVP VPGS  ++++ EEAV +A E+G+PVM+KA+AGGGG+GMR+A+  D+  K   
Sbjct:   123 MIAAGVPVVPGSKKVVENVEEAVAIAREIGYPVMLKASAGGGGKGMRIAQNDDDLAKAFI 182

Query:   252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              A++EA  AFGN  VYLEKYV+ PRHIE QVL DK+GN V+  ERDCSIQ
Sbjct:   183 TARTEAQNAFGNPDVYLEKYVEEPRHIEIQVLGDKHGNYVYLFERDCSIQ 232

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|GSU_2019 GSU_2019 "acetyl-CoA carboxylase, biotin carboxylase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 135/229 (58%), Positives = 168/229 (73%)

Query:    73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
             K+L+ANRGEIA+RVIR   E+GI  VAVYST D+D+LHVKLADESVCIG APS QSYL I
Sbjct:     4 KVLIANRGEIALRVIRACKELGIKTVAVYSTADRDSLHVKLADESVCIGPAPSLQSYLNI 63

Query:   133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
               ++SAA       +HPGYGFL+ENA F E+C   GI FIGP+  S+RIMGDK +AR+ +
Sbjct:    64 NAIISAAELTDAEAIHPGYGFLSENAAFAEICENCGITFIGPSSQSMRIMGDKISARQAV 123

Query:   193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
                 VP +PG+   +    EAVK+A ++GFPV+IKATAGGGGRGM++   P         
Sbjct:   124 IKENVPILPGTKEGVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFAT 183

Query:   253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             A++EA A FGN  VY+EKY + PRH+E QV+ADK+GNV+H GERDCSIQ
Sbjct:   184 ARAEAQAGFGNPEVYIEKYCEKPRHVEIQVMADKHGNVIHLGERDCSIQ 232

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

TIGR_CMR|CJE_1482 CJE_1482 "acetyl-CoA carboxylase, biotin carboxylase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 126/230 (54%), Positives = 169/230 (73%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             + IL+ANRGEIA+R +RT  EMG   + VYS  DKDAL++K AD S+CIG+A SS+SYL 
Sbjct:     4 KSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLN 63

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP +++AA       + PGYGFL+EN  FVE+C +H I FIGP+ +++ +M DKS A++ 
Sbjct:    64 IPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQV 123

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
             M+ AGVP +PGSDG L   E A KLA E+G+PV++KA AGGGGRGMR+ +   +  K   
Sbjct:   124 MQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYW 183

Query:   252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              A+SEA  AFG+  +Y+EKY+QNPRHIE Q++ D +GNV+H GERDCS+Q
Sbjct:   184 SAESEAMTAFGDGTMYMEKYIQNPRHIEVQIIGDSFGNVIHVGERDCSMQ 233

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0918 CHY_0918 "acetyl-CoA carboxylase, biotin carboxylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 127/231 (54%), Positives = 170/231 (73%)

Query:    71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL 130
             QEKIL+ANRGEIA+R+IR   E+GI    VY+  DKD+L VK+ADE+  + E   ++SYL
Sbjct:     2 QEKILIANRGEIALRIIRACKELGITSAVVYTPADKDSLPVKMADEAYPLKE---NKSYL 58

Query:   131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
              I  +++ A+    T +HPGYGFLAEN+ F + C + GI FIGP+  +I +MGDK+ ARE
Sbjct:    59 NIEEIINTALKNQVTAIHPGYGFLAENSKFAKSCLDAGIKFIGPSAKAIELMGDKAVARE 118

Query:   191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
              MK AGVP +PGSDG +    EA+K+ADE+G+PV++KA  GGGGRGMR+   P E  + +
Sbjct:   119 IMKKAGVPVIPGSDGEIDDFREALKVADEIGYPVIVKAAGGGGGRGMRIVHTPKELEEAI 178

Query:   251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             Q A  EAA+ FGN  +YLEKY+Q+ RH+EFQ+LAD+YGN V+ GERDCS+Q
Sbjct:   179 QSAAREAASTFGNSKLYLEKYLQDCRHVEFQILADQYGNAVYLGERDCSLQ 229

GO:0003989 "acetyl-CoA carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

UNIPROTKB|Q9KV62 VC_0295 "Acetyl-CoA carboxylase, biotin carboxylase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 126/231 (54%), Positives = 164/231 (70%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +K+++ANRGEIA+R++R   E+GI  VAV+ST D+D  HV LADES+CIG A S  SYL 
Sbjct:     3 DKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP ++SAA   G   +HPGYGFL+ENA F E     G  F+GP  ++IR+MGDK +A   
Sbjct:    63 IPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINA 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
             MK AGVP VPGSDG L + E   K  A  +G+PV+IKA+ GGGGRGMR+ +   E  K +
Sbjct:   123 MKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSI 182

Query:   251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             Q  ++EA AAF ND VY+EK+++NPRH+E QV+AD  GN +H  ERDCS+Q
Sbjct:   183 QMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQ 233

GO:0004075 "biotin carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

TIGR_CMR|VC_0295 VC_0295 "acetyl-CoA carboxylase, biotin carboxylase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 126/231 (54%), Positives = 164/231 (70%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +K+++ANRGEIA+R++R   E+GI  VAV+ST D+D  HV LADES+CIG A S  SYL 
Sbjct:     3 DKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP ++SAA   G   +HPGYGFL+ENA F E     G  F+GP  ++IR+MGDK +A   
Sbjct:    63 IPRIISAAEVTGAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINA 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
             MK AGVP VPGSDG L + E   K  A  +G+PV+IKA+ GGGGRGMR+ +   E  K +
Sbjct:   123 MKKAGVPCVPGSDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSI 182

Query:   251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             Q  ++EA AAF ND VY+EK+++NPRH+E QV+AD  GN +H  ERDCS+Q
Sbjct:   183 QMTRAEAKAAFNNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQ 233

GO:0004075 "biotin carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

UNIPROTKB|P24182 accC [Escherichia coli K-12 (taxid:83333)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 125/231 (54%), Positives = 165/231 (71%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct:     3 DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct:    63 IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122

Query:   192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
             MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct:   123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182

Query:   251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
                ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct:   183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 233

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IMP

GO:0004075 "biotin carboxylase activity" evidence=IEA;IDA

GO:0006633 "fatty acid biosynthetic process" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IC

GO:0046872 "metal ion binding" evidence=IEA

GO:2001295 "malonyl-CoA biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003989 "acetyl-CoA carboxylase activity" evidence=IEA

UNIPROTKB|Q487S0 accC "Acetyl-CoA carboxylase, biotin carboxylase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 124/231 (53%), Positives = 162/231 (70%)

Query:    72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
             +K+++ANRGEIA+R++R   E+GI  VAV+ST DK+  HV LADE++CIG+AP+  SYL 
Sbjct:     3 DKVVIANRGEIALRILRACKELGIKTVAVHSTADKNLKHVLLADETICIGKAPAPDSYLN 62

Query:   132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
             IP +++AA       +HPGYGFLAENA F E     G  FIGP  +SIRIMGDK  A + 
Sbjct:    63 IPAIITAAELTNAVAIHPGYGFLAENADFAEQVENSGFAFIGPKAESIRIMGDKVQAIKA 122

Query:   192 MKNAGVPTVPGSDGLLQSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
             MK AGVP VPGSDG L   EEA K  A  +G+P+++KA  GGGGRGMR+ +   E V+ +
Sbjct:   123 MKVAGVPCVPGSDGPLDDDEEANKAHAKRIGYPIIVKAAGGGGGRGMRVVRSEAELVESI 182

Query:   251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
                K EA   F ND VY+EK+++NPRH+E Q++AD  G  +H GERDCS+Q
Sbjct:   183 ALTKKEAGTIFKNDMVYMEKFLENPRHVEIQIMADGKGAAIHLGERDCSMQ 233

GO:0004075 "biotin carboxylase activity" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0009317 "acetyl-CoA carboxylase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04983	ACCC_ARATH	6, ., 4, ., 1, ., 2	0.8013	0.9520	0.5549	yes	no
B9HBA8	ACCC1_POPTR	6, ., 4, ., 1, ., 2	0.8538	0.9424	0.5587	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.4	0.921
3rd Layer	6.4.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VI0248	hypothetical protein (528 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00041116	SubName- Full=Putative uncharacterized protein; (281 aa)	•		•			•	•		0.976
	estExt_Genewise1_v1.C_LG_XVII1359	hypothetical protein (284 aa)	•		•			•	•		0.974
	grail3.0095003402	hypothetical protein (284 aa)	•		•			•	•		0.974
	estExt_fgenesh4_pg.C_LG_IX0832	[acyl-carrier protein] S-malonyltransferase (EC-2.3.1.39) (371 aa)	•					•	•		0.963
	gw1.XIV.1152.1	acetyl-CoA carboxylase (587 aa)	•		•			•	•		0.958
	eugene3.00161050	SubName- Full=Putative uncharacterized protein; (760 aa)	•		•			•	•		0.939
	eugene3.00060828	acetyl-CoA carboxylase (EC-6.4.1.2) (753 aa)	•		•			•	•		0.939
	fgenesh4_pg.C_scaffold_16349000001	Predicted protein (290 aa)	•		•	•	•	•	•		0.921
	fgenesh4_pg.C_LG_XV000664	malate synthase (EC-2.3.3.9) (554 aa)					•	•	•		0.919
	eugene3.00140876	acetate-CoA ligase (EC-6.2.1.1) (684 aa)						•	•		0.911

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
PRK08591	451	PRK08591, PRK08591, acetyl-CoA carboxylase biotin	1e-160
TIGR00514	449	TIGR00514, accC, acetyl-CoA carboxylase, biotin ca	1e-152
COG4770	645	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase	1e-124
PRK05586	447	PRK05586, PRK05586, biotin carboxylase; Validated	1e-123
COG0439	449	COG0439, AccC, Biotin carboxylase [Lipid metabolis	1e-122
PRK08654	499	PRK08654, PRK08654, pyruvate carboxylase subunit A	1e-118
PRK08462	445	PRK08462, PRK08462, biotin carboxylase; Validated	1e-114
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	1e-113
PRK06111	450	PRK06111, PRK06111, acetyl-CoA carboxylase biotin	1e-110
PRK07178	472	PRK07178, PRK07178, pyruvate carboxylase subunit A	1e-104
COG1038	1149	COG1038, PycA, Pyruvate carboxylase [Energy produc	1e-100
TIGR02712	1201	TIGR02712, urea_carbox, urea carboxylase	1e-97
PRK12833	467	PRK12833, PRK12833, acetyl-CoA carboxylase biotin	2e-97
TIGR01235	1143	TIGR01235, pyruv_carbox, pyruvate carboxylase	2e-89
PRK08463	478	PRK08463, PRK08463, acetyl-CoA carboxylase subunit	2e-87
pfam02786	211	pfam02786, CPSase_L_D2, Carbamoyl-phosphate syntha	8e-53
pfam00289	108	pfam00289, CPSase_L_chain, Carbamoyl-phosphate syn	9e-50
COG0458	400	COG0458, CarB, Carbamoylphosphate synthase large s	7e-14
PRK05294	1066	PRK05294, carB, carbamoyl phosphate synthase large	3e-12
TIGR01369	1050	TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth	1e-11
PRK12815	1068	PRK12815, carB, carbamoyl phosphate synthase large	3e-11
PRK12815	1068	PRK12815, carB, carbamoyl phosphate synthase large	5e-11
COG0026	375	COG0026, PurK, Phosphoribosylaminoimidazole carbox	7e-11
TIGR01369	1050	TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synth	2e-10
TIGR01161	352	TIGR01161, purK, phosphoribosylaminoimidazole carb	2e-10
PLN02735	1102	PLN02735, PLN02735, carbamoyl-phosphate synthase	6e-10
PRK06019	372	PRK06019, PRK06019, phosphoribosylaminoimidazole c	3e-09
TIGR00877	422	TIGR00877, purD, phosphoribosylamine--glycine liga	2e-08
pfam13535	183	pfam13535, ATP-grasp_4, ATP-grasp domain	4e-08
PLN02735	1102	PLN02735, PLN02735, carbamoyl-phosphate synthase	2e-07
COG0151	428	COG0151, PurD, Phosphoribosylamine-glycine ligase	4e-07
TIGR00768	277	TIGR00768, rimK_fam, alpha-L-glutamate ligases, Ri	4e-07
TIGR02144	280	TIGR02144, LysX_arch, Lysine biosynthesis enzyme L	6e-07
TIGR02068	864	TIGR02068, cya_phycin_syn, cyanophycin synthetase	8e-07
PRK01372	304	PRK01372, ddl, D-alanine--D-alanine ligase; Review	1e-06
PRK05294	1066	PRK05294, carB, carbamoyl phosphate synthase large	2e-06
PLN02948	577	PLN02948, PLN02948, phosphoribosylaminoimidazole c	2e-06
PRK13790	379	PRK13790, PRK13790, phosphoribosylamine--glycine l	2e-05
pfam02222	171	pfam02222, ATP-grasp, ATP-grasp domain	2e-05
PRK12767	326	PRK12767, PRK12767, carbamoyl phosphate synthase-l	3e-05
pfam08442	202	pfam08442, ATP-grasp_2, ATP-grasp domain	4e-05
TIGR01205	315	TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine l	5e-05
PRK00885	420	PRK00885, PRK00885, phosphoribosylamine--glycine l	5e-05
PRK00696	388	PRK00696, sucC, succinyl-CoA synthetase subunit be	5e-05
pfam01071	193	pfam01071, GARS_A, Phosphoribosylglycinamide synth	6e-05
COG0189	318	COG0189, RimK, Glutathione synthase/Ribosomal prot	8e-05
COG0045	387	COG0045, SucC, Succinyl-CoA synthetase, beta subun	9e-05
PRK02186	887	PRK02186, PRK02186, argininosuccinate lyase; Provi	1e-04
PRK14016	727	PRK14016, PRK14016, cyanophycin synthetase; Provis	1e-04
PRK13789	426	PRK13789, PRK13789, phosphoribosylamine--glycine l	2e-04
COG1181	317	COG1181, DdlA, D-alanine-D-alanine ligase and rela	5e-04
TIGR01142	380	TIGR01142, purT, phosphoribosylglycinamide formylt	6e-04
pfam08443	190	pfam08443, RimK, RimK-like ATP-grasp domain	7e-04
TIGR01016	386	TIGR01016, sucCoAbeta, succinyl-CoA synthetase, be	8e-04

>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated

 Score =  454 bits (1170), Expect = e-160
 Identities = 144/230 (62%), Positives = 181/230 (78%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KIL+ANRGEIA+R+IR   E+GI  VAV+ST D+DALHV+LADE+VCIG APS +SYL 
Sbjct: 3   DKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E+C + G  FIGP+ ++IR+MGDK TA+ T
Sbjct: 63  IPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKAT 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP VPGSDG +   EEA+ +A E+G+PV+IKATAGGGGRGMR+ +   E  K   
Sbjct: 123 MKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKATAGGGGRGMRVVRTEAELEKAFS 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A++EA AAFGN GVY+EKY++NPRHIE QVLAD +GN +H GERDCS+Q
Sbjct: 183 MARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQ 232

Length = 451

>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit

 Score =  433 bits (1114), Expect = e-152
 Identities = 150/230 (65%), Positives = 187/230 (81%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KIL+ANRGEIA+R++R   E+GI  VAV+ST D+DALHV LADE+VCIG APS++SYL 
Sbjct: 3   DKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IPN++SAA   G   +HPGYGFL+ENA F E C   G  FIGP+ +SIR+MGDK +A ET
Sbjct: 63  IPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIET 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP VPGSDGL++  EE V++A  +G+PV+IKATAGGGGRGMR+ +EPDE VK + 
Sbjct: 123 MKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSIS 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             ++EA AAFGNDGVY+EKY++NPRH+E QVLADKYGN ++ GERDCSIQ
Sbjct: 183 MTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQ 232

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 449

>gnl|CDD|227111 COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

 Score =  368 bits (947), Expect = e-124
 Identities = 134/238 (56%), Positives = 176/238 (73%), Gaps = 5/238 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
            KIL+ANRGEIA RVIRTA ++GI  VAVYS  D DALHV++ADE+V IG AP+++SYL 
Sbjct: 3   SKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLD 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  ++ AA   G   +HPGYGFL+ENA F +   + G+ FIGP+  +IR MGDK  A++ 
Sbjct: 63  IDKIIDAARRTGAQAIHPGYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKL 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
              AGVPTVPG  G +Q   E V +A+E+G+PV+IKA+AGGGG+GMR+ + P+EF + L+
Sbjct: 123 AAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKASAGGGGKGMRVVETPEEFAEALE 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            A+ EA A+FG+D V++EKY+  PRHIE QV AD++GNVVH GERDCS+Q     VIE
Sbjct: 183 SARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE 240

Length = 645

>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated

 Score =  359 bits (922), Expect = e-123
 Identities = 139/229 (60%), Positives = 182/229 (79%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KIL+ANRGEIAVR+IR   EMGI  VAVYS  DKDALHV+LADE+VCIG A S  SYL I
Sbjct: 4   KILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNI 63

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
            N++SA +  G   +HPG+GFL+EN+ F +MC+E  I FIGP+ ++I +MG+KS ARE M
Sbjct: 64  QNIISATVLTGAQAIHPGFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIM 123

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
             AGVP VPGS+G +++ EEA+++A E+G+PVM+KA+AGGGGRG+R+ +  +E +K    
Sbjct: 124 IKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNT 183

Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           AKSEA AAFG+D +Y+EK+++NP+HIEFQ+L D YGNVVH GERDCS+Q
Sbjct: 184 AKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQ 232

Length = 447

>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism]

 Score =  356 bits (917), Expect = e-122
 Identities = 142/238 (59%), Positives = 174/238 (73%), Gaps = 5/238 (2%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KIL+ANRGEIAVR+IR   E+GI  VAVYS  D DALHV LADE+VCIG APS+ SYL I
Sbjct: 4   KILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNI 63

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             +++AA   G   +HPGYGFL+ENA F E C E G+ FIGP+ ++IR MGDK TAR  M
Sbjct: 64  DAIIAAAEETGADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLM 123

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
             AGVP VPGSDG +   EEA+ +A+E+G+PV++KA AGGGGRGMR+ +  +E     + 
Sbjct: 124 AKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEA 183

Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
           A+ EA AAFGN  VYLEK+++ PRHIE QVL D +GNV+H GERDCSIQ     VIE 
Sbjct: 184 ARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIEE 241

Length = 449

>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated

 Score =  348 bits (895), Expect = e-118
 Identities = 122/230 (53%), Positives = 166/230 (72%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KIL+ANRGEIA+RV+R   E+GI  VAVYS  DK+AL VK ADE+  IG AP S+SYL 
Sbjct: 3   KKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  ++  A   G   +HPGYGFLAEN  F + C + GI FIGP+ D I  MG K  A++ 
Sbjct: 63  IERIIDVAKKAGADAIHPGYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKL 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP +PG++  ++  EEA ++A+E+G+PV+IKA+AGGGG GMR+    +E    ++
Sbjct: 123 MKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIE 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             +S A +AFG+  V++EKY++ PRHIE Q+LADK+GNV+H G+R+CSIQ
Sbjct: 183 STQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQ 232

Length = 499

>gnl|CDD|236269 PRK08462, PRK08462, biotin carboxylase; Validated

 Score =  336 bits (863), Expect = e-114
 Identities = 131/230 (56%), Positives = 173/230 (75%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           ++IL+ANRGEIA+R IRT  EMG   +A+YST DKDAL++K AD  +CIG A SS+SYL 
Sbjct: 5   KRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLN 64

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA       + PGYGFL+EN  FVE+C  H I FIGP+ + + +M DKS A+E 
Sbjct: 65  IPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEV 124

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP +PGSDG L+S EEA K+A E+G+PV++KA AGGGGRGMR+ ++  +   L  
Sbjct: 125 MKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAAAGGGGRGMRVVEDESDLENLYL 184

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A+SEA +AFG+  +Y+EK++ NPRHIE Q+L DK+GNV+H GERDCS+Q
Sbjct: 185 AAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQ 234

Length = 445

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score =  352 bits (905), Expect = e-113
 Identities = 128/240 (53%), Positives = 168/240 (70%), Gaps = 6/240 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPS-SQSYL 130
           +K+LVANRGEIA+R+ R A E+GI  VA+YS  DK +LH   ADE+  IGE     ++YL
Sbjct: 6   KKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYL 65

Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A   G   +HPGYGFL+EN  F   C E GI FIGP  + +R++GDK  AR 
Sbjct: 66  DIDEIIRVAKQAGVDAIHPGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARN 125

Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
               AGVP +PGS+G +   EEA++ A+E+G+P+M+KA+AGGGGRGMR+ +  +E  +  
Sbjct: 126 AAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEEAF 185

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
           ++AK EA AAFGND VYLEKYV+NPRHIE Q+L DK+GNVVH  ERDCS+Q     V+EI
Sbjct: 186 ERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVVEI 245

Length = 1146

>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated

 Score =  326 bits (838), Expect = e-110
 Identities = 122/237 (51%), Positives = 161/237 (67%), Gaps = 5/237 (2%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           K+L+ANRGEIAVR+IRT  ++GI  VA+YS  D+DALHVK+ADE+  IG     +SYL +
Sbjct: 4   KVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNL 63

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             ++  A   G   +HPGYG L+ENA F E C+E GI FIGP+ D I  MG K  AR  M
Sbjct: 64  EKIIEIAKKTGAEAIHPGYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAM 123

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
           + AGVP VPG    L+  EEA+ +A ++G+PVM+KA+AGGGG GM+L +   E  K  + 
Sbjct: 124 QAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFES 183

Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            K  AA  FGN  +Y+EKY+++PRHIE Q+LAD +GN V+  ER+CS+Q     VIE
Sbjct: 184 NKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE 240

Length = 450

>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated

 Score =  313 bits (803), Expect = e-104
 Identities = 128/238 (53%), Positives = 162/238 (68%), Gaps = 6/238 (2%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KIL+ANRGEIAVR++R   EMGI  VA+YS  D+ ALHVK ADE+  IG  P    YL  
Sbjct: 4   KILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNP 62

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             +++ A+  GC  LHPGYGFL+ENA   E+C E GI FIGP+ + IR MGDK+ AR  M
Sbjct: 63  RRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAM 122

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
             AGVP  PGS+G L   +EA+  A+ +G+PVM+KAT+GGGGRG+R     +E  +   +
Sbjct: 123 IKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKATSGGGGRGIRRCNSREELEQNFPR 182

Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
             SEA  AFG+  V+LEK + NP+HIE Q+LAD +GNVVH  ERDCSIQ     +IEI
Sbjct: 183 VISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIEI 240

Length = 472

>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and conversion]

 Score =  317 bits (815), Expect = e-100
 Identities = 126/239 (52%), Positives = 166/239 (69%), Gaps = 6/239 (2%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS-QSYLL 131
           K+LVANRGEIA+RV R A+E+GI  VA+YS  D+ +LH   ADES  IGE     ++YL 
Sbjct: 9   KVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLS 68

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  ++  A   G   +HPGYGFL+EN  F   C E GI FIGP P+ + ++GDK  AR  
Sbjct: 69  IDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNA 128

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
              AGVP +PG+DG +++ EEA++ A+E G+PVMIKA AGGGGRGMR+ +   +  +  +
Sbjct: 129 AIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFE 188

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
           +AKSEA AAFGND VY+EK V+NP+HIE Q+L D +GNVVH  ERDCS+Q     V+E+
Sbjct: 189 RAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEV 247

Length = 1149

>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase

 Score =  311 bits (799), Expect = 1e-97
 Identities = 121/238 (50%), Positives = 160/238 (67%), Gaps = 6/238 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           + +L+ANRGEIAVR+IRT   MGI  VAVYS  D  + HV  ADE+VC+G AP+++SYL 
Sbjct: 2   DTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLD 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  +L+AA   G   +HPGYGFL+ENA F E C   GI F+GP P+ IR  G K TARE 
Sbjct: 62  IDKILAAAKKTGAQAIHPGYGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTAREL 121

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
            + AGVP +PG+ GLL S +EA++ A E+G+PVM+K+TAGGGG GM+      E  +  +
Sbjct: 122 AEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFE 180

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
             K    + FG+ GV+LE++V+N RH+E Q+  D  G VV  GERDCS+Q     V+E
Sbjct: 181 TVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVE 238

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea [Central intermediary metabolism, Nitrogen metabolism]. Length = 1201

>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

 Score =  294 bits (755), Expect = 2e-97
 Identities = 119/232 (51%), Positives = 163/232 (70%), Gaps = 1/232 (0%)

Query: 70  RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSY 129
           R  K+LVANRGEIAVR+IR A E+G+  VA  S  D+D+L  ++ADE+V IG + +++SY
Sbjct: 4   RIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSY 63

Query: 130 LLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTAR 189
           L    +L+AA   G   +HPGYGFL+ENA F E     G+ F+GP+  +IR MGDK+ AR
Sbjct: 64  LNPAAILAAARQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARAR 123

Query: 190 ETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249
            T + AGVPTVPGSDG++ S + A+++A  +G+P+MIKA AGGGGRG+R+A +  +    
Sbjct: 124 RTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDAAQLAAE 183

Query: 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           L  A+ EA AAFG+ GVYLE+++   RHIE Q+L D    VVH  ER+CS+Q
Sbjct: 184 LPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQ 234

Length = 467

>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase

 Score =  288 bits (739), Expect = 2e-89
 Identities = 124/241 (51%), Positives = 163/241 (67%), Gaps = 8/241 (3%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS---QSY 129
           KILVANRGEIA+RV R A+E+GI  VA+YS  DK +LH + ADES  +GE P     ++Y
Sbjct: 1   KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAY 60

Query: 130 LLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTAR 189
           L I  ++  A   G   +HPGYGFL+EN+ F + C + GI FIGP  + +  +GDK  AR
Sbjct: 61  LSIDEIIRVAKLNGVDAIHPGYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAAR 120

Query: 190 ETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL 249
                AGVP VPG+DG  ++ EE +  A  +G+PV+IKA+ GGGGRGMR+ +   +    
Sbjct: 121 NLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKASWGGGGRGMRVVRSEADVADA 180

Query: 250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            Q+AKSEA AAFGND VY+EK ++ PRHIE Q+L DK+GNVVH  ERDCS+Q     V+E
Sbjct: 181 FQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE 240

Query: 305 I 305
           +
Sbjct: 241 V 241

This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143

>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated

 Score =  269 bits (689), Expect = 2e-87
 Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 7/239 (2%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KIL+ANRGEIAVRVIR   ++ I  VA+Y+  D++ LHVK+ADE+  IG  P  + YL +
Sbjct: 4   KILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPI-KGYLDV 62

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             ++  A + G   +HPGYGFL+EN  F +   + GI FIGP  + IR MG+K+ AR  M
Sbjct: 63  KRIVEIAKACGADAIHPGYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLM 122

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           K  G+P VPG++ L   + E +K+ A ++G+PV++KA+ GGGGRG+R+  + ++     +
Sbjct: 123 KKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKASGGGGGRGIRVVHKEEDLENAFE 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
             K EA A F ND V++EKYV NPRHIEFQ+L D YGN++H  ERDCSIQ     VIEI
Sbjct: 183 SCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVIEI 241

Length = 478

>gnl|CDD|190425 pfam02786, CPSase_L_D2, Carbamoyl-phosphate synthase L chain, ATP binding domain

 Score =  172 bits (437), Expect = 8e-53
 Identities = 58/119 (48%), Positives = 80/119 (67%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK   +  MK AGVPTVPG+ G +++ EEA+  A E+G+PV+IKA  GGGG GM +A+  
Sbjct: 1   DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNE 60

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV 302
           +E  +L   A +EA AAFGN  V +EK ++ P+HIE+QVL D +GN +    R+CS Q 
Sbjct: 61  EELAELFALALAEAPAAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSDQR 119

Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold. Length = 211

>gnl|CDD|201133 pfam00289, CPSase_L_chain, Carbamoyl-phosphate synthase L chain, N-terminal domain

 Score =  160 bits (408), Expect = 9e-50
 Identities = 59/107 (55%), Positives = 75/107 (70%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +K+LVANRGEIAVR+IR   E+GI  VAV S  D  + HV+LADE+  +G  P+S+SYL 
Sbjct: 2   KKVLVANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLN 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS 178
           I  +L  A   G   +HPGYGFL+ENA F E C E GI FIGP+P++
Sbjct: 62  IERILDIAEKEGADAIHPGYGFLSENAEFAEACEEAGITFIGPSPEA 108

Carbamoyl-phosphate synthase catalyzes the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesise carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. Length = 108

>gnl|CDD|223534 COG0458, CarB, Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 36/129 (27%), Positives = 70/129 (54%), Gaps = 7/129 (5%)

Query: 163 MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222
           +  ++G+  +G +P++I I  DK   +E M+  G+P       +  S EEA ++ADE+G+
Sbjct: 95  VLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVPS---RIAHSVEEADEIADEIGY 151

Query: 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
           PV++K + G GG G  +A   +E  ++++    E   A   + V +E+ +   +  E++V
Sbjct: 152 PVIVKPSFGLGGSGGGIAYNEEELEEIIE----EGLRASPVEEVLIEESIIGWKEFEYEV 207

Query: 283 LADKYGNVV 291
           + D   N +
Sbjct: 208 VRDGKDNCI 216

Length = 400

>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 67.0 bits (165), Expect = 3e-12
 Identities = 44/147 (29%), Positives = 79/147 (53%), Gaps = 17/147 (11%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           ++G+  IG   ++I    D+   +E MK  G+P VP S G+  S EEA+++A+E+G+PV+
Sbjct: 110 KYGVELIGAKLEAIDKAEDRELFKEAMKKIGLP-VPRS-GIAHSMEEALEVAEEIGYPVI 167

Query: 226 IKA--TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL 283
           I+   T GG G G+  A   +E  +++++             V +E+ +   +  E++V+
Sbjct: 168 IRPSFTLGGTGGGI--AYNEEELEEIVER----GLDLSPVTEVLIEESLLGWKEYEYEVM 221

Query: 284 ADKYGNVVHFGERDCSIQVIE---IHT 307
            DK  N +      CSI+ I+   +HT
Sbjct: 222 RDKNDNCIIV----CSIENIDPMGVHT 244

Length = 1066

>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 13/145 (8%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           ++G+  +G   ++I+   D+   RE MK  G P       +  S EEA+  A E+G+PV+
Sbjct: 109 KYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPES--EIAHSVEEALAAAKEIGYPVI 166

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           ++     GG G  +A   +E  ++ ++A S +      + V +EK +   + IE++V+ D
Sbjct: 167 VRPAFTLGGTGGGIAYNREELKEIAERALSASPI----NQVLVEKSLAGWKEIEYEVMRD 222

Query: 286 KYGNVVHFGERDCSIQVIE---IHT 307
              N +      C+++  +   +HT
Sbjct: 223 SNDNCITV----CNMENFDPMGVHT 243

Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050

>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 17/157 (10%)

Query: 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213
           L E+ +  +     G+  +G N ++I+   D+   R  MK  G P VP S  ++ S EEA
Sbjct: 102 LHEDGILEQY----GVELLGTNIEAIQKGEDRERFRALMKELGEP-VPES-EIVTSVEEA 155

Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           +  A+++GFP++++     GG G  +A+  +E  +L +Q     A+        LE+ + 
Sbjct: 156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQG--LQASPIHQ--CLLEESIA 211

Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQVIE---IHT 307
             + IE++V+ D+ GN +      C+++ I+   IHT
Sbjct: 212 GWKEIEYEVMRDRNGNCITV----CNMENIDPVGIHT 244

Length = 1068

>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 24/122 (19%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  +G +PD+I  + D+    + +   G+P VPG        EEA   A  +G+PV+
Sbjct: 652 EAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPG--LTATDEEEAFAFAKRIGYPVL 709

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           I+ +   GG+GM +                E A         LE Y+       + +L D
Sbjct: 710 IRPSYVIGGQGMAV-------------VYDEPA---------LEAYLAENASQLYPILID 747

Query: 286 KY 287
           ++
Sbjct: 748 QF 749

Length = 1068

>gnl|CDD|223105 COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

 Score = 62.3 bits (152), Expect = 7e-11
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 12/113 (10%)

Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           +E        F  P+PD++RI  D+   ++ +  AG+P  P    ++ S EE    A +L
Sbjct: 78  LEKLAASVKVF--PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADL 133

Query: 221 GFPVMIKATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
           GFP ++K   GG  G+G    +   +        +  AA         LE++V
Sbjct: 134 GFPAVLKTRRGGYDGKGQWRIRSDAD-------LELRAAGLAEGGVPVLEEFV 179

Length = 375

>gnl|CDD|233379 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  +G +P+SI    D+    E +   G+P          S EEAV+ A E+G+PV+
Sbjct: 651 EAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKW--KTATSVEEAVEFASEIGYPVL 708

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           ++ +   GGR M +    +E  + L+    EA        V ++KY+++   ++   ++D
Sbjct: 709 VRPSYVLGGRAMEIVYNEEELRRYLE----EAVEVSPEHPVLIDKYLEDAVEVDVDAVSD 764

Query: 286 KYGNVV 291
               V+
Sbjct: 765 G-EEVL 769

Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 1050

>gnl|CDD|233295 TIGR01161, purK, phosphoribosylaminoimidazole carboxylase, PurK protein

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG 221
           E     G+    P+PD++ I+ D+ T ++ ++  G+P  P    +++  EE      ELG
Sbjct: 77  EKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELG 133

Query: 222 FPVMIKATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
           FPV++KA  GG  GRG    +   +    L Q    AA   G+    +E++V
Sbjct: 134 FPVVLKARTGGYDGRGQYRIRNEAD----LPQ----AAKELGDRECIVEEFV 177

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 352

>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 19/141 (13%)

Query: 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
           G +PDSI    D+      +    +    G  G+ +S  +A+ +A  +G+PV+++ +   
Sbjct: 691 GTSPDSIDAAEDRERFNAILNELKIEQPKG--GIARSEADALAIAKRIGYPVVVRPSYVL 748

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVV- 291
           GGR M +    D+    L+     A        V ++KY+ +   I+   LAD  GNVV 
Sbjct: 749 GGRAMEIVYSDDKLKTYLET----AVEVDPERPVLVDKYLSDATEIDVDALADSEGNVVI 804

Query: 292 ------------HFGERDCSI 300
                       H G+  CS+
Sbjct: 805 GGIMEHIEQAGVHSGDSACSL 825

Length = 1102

>gnl|CDD|235674 PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
           P PD++ I  D+ T ++ +   G+P  P +  ++ S E+      +LG P ++K   GG 
Sbjct: 90  PGPDALAIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTRRGGY 147

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            G+G  + +  ++           A A  G+    LE++V
Sbjct: 148 DGKGQWVIRSAEDL--------EAAWALLGSVPCILEEFV 179

Length = 372

>gnl|CDD|233164 TIGR00877, purD, phosphoribosylamine--glycine ligase

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           V+   E GI   GP  ++ ++ G K+ A++ MK  G+PT      +    EEA     E 
Sbjct: 81  VDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VFTDPEEAKSYIQEK 138

Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
           G P+++KA     G+G+ +AK  +E +K ++    E       + V +E+++      EF
Sbjct: 139 GAPIVVKADGLAAGKGVIVAKTNEEAIKAVEDI-LEQKFGDAGERVVIEEFLDGE---EF 194

Query: 281 QVLA 284
            +LA
Sbjct: 195 SLLA 198

Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 422

>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK+  RE ++ AG+P  P    L+   E+    A+E+GFPV++K   G G  G+      
Sbjct: 4   DKALMRELLRAAGLPVPPFF--LVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGVFRVDSA 61

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV--LADKYGNVVHFG 294
            E    L    +E           +E+Y+      E+ V  L D  G +V  G
Sbjct: 62  AELEAALAALAAEVE---DTREYLVEEYIDGD---EYHVDGLVDD-GELVFLG 107

This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 183

>gnl|CDD|215391 PLN02735, PLN02735, carbamoyl-phosphate synthase

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 18/162 (11%)

Query: 154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA 213
           LAE+ +      ++G+  IG   D+I+   D+   ++ M+  G+ T P   G+  + +E 
Sbjct: 118 LAESGIL----EKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPP--SGIATTLDEC 171

Query: 214 VKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            ++A+++G FP++I+     GG G  +A   +EF  +    K+  AA+     V +EK +
Sbjct: 172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETIC---KAGLAASI-TSQVLVEKSL 227

Query: 273 QNPRHIEFQVLADKYGNVVHFGERDCSIQVIE---IHTHTEI 311
              +  E +V+ D   NVV      CSI+ I+   +HT   I
Sbjct: 228 LGWKEYELEVMRDLADNVVII----CSIENIDPMGVHTGDSI 265

Length = 1102

>gnl|CDD|223229 COG0151, PurD, Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           V+  R  GI   GP   + ++ G K+ A++ MK  G+PT      +    EEA    DE 
Sbjct: 80  VDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPT--AEYEVFTDPEEAKAYIDEK 137

Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
           G P+++KA     G+G+ +A   +E    + +     A       V +E+++      EF
Sbjct: 138 GAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLDGE---EF 194

Query: 281 QVLA 284
            + A
Sbjct: 195 SLQA 198

Length = 428

>gnl|CDD|233121 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 6/112 (5%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
             G+  I    D+I   GDK    + +  AG+P  P + GL  S EEA+KL +E+GFPV+
Sbjct: 71  SLGVPVINS-SDAILNAGDKFLTSQLLAKAGLPQ-PRT-GLAGSPEEALKLIEEIGFPVV 127

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH 277
           +K   G  GR + LA++      LL+  +         +  Y+++Y++ P  
Sbjct: 128 LKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQ---NLFYVQEYIKKPGG 176

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277

>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
             G+  I      I   GDK      +  AGVPT P +  L    E A+KLA+ LG+PV+
Sbjct: 70  ALGVPVINS-SHVIEACGDKIFTYLKLAKAGVPT-PRT-YLAFDREAALKLAEALGYPVV 126

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLA 284
           +K   G  GR + L ++ DE   LL+    E      +   Y+++Y+  P R I   V+ 
Sbjct: 127 LKPVIGSWGRLVALIRDKDELESLLEH--KEVLGGSQHKLFYIQEYINKPGRDIRVFVIG 184

Query: 285 DK 286
           D+
Sbjct: 185 DE 186

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280

>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 36/235 (15%)

Query: 80  GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLS 137
           G +AV ++R+A + G          D +    +L D      +G  PS+ +      ++ 
Sbjct: 123 GRLAVDLVRSAIDDG--------PFDLEQALQRLRDLVADASLG--PSTAA------IVD 166

Query: 138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGV 197
            A  RG   +    G L +        R         +  ++ I  DK   +E + +AGV
Sbjct: 167 EAEKRGIPYMRLSAGSLVQLGYGSRQKRIQATETDRTSAIAVEIACDKDLTKEILSDAGV 226

Query: 198 PTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEA 257
           P   G+  ++QS E+A + A +LG+PV+IK   G  GRG+         + +L + + E+
Sbjct: 227 PVPEGT--VVQSAEDAWEAAQDLGYPVVIKPYDGNHGRGV--------TINILTRDEIES 276

Query: 258 A---AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT 309
           A   A   + GV +E+++   R     V+  K   VV   ER  +  VI    HT
Sbjct: 277 AYEAAVEESSGVIVERFITG-RDHRLLVVGGK---VVAVAERVPA-HVIGDGVHT 326

Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in E. coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. This model makes the designation as cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions [Cellular processes, Biosynthesis of natural products]. Length = 864

>gnl|CDD|234948 PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK   +   + AG+PT P    +L   E+ +   D+LG P+++K    G   G+   KE 
Sbjct: 98  DKLRTKLVWQAAGLPTPPWI--VLTREEDLLAAIDKLGLPLVVKPAREGSSVGVSKVKEE 155

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
           DE      QA  E A  + ++ V +EKY++     E  V
Sbjct: 156 DEL-----QAALELAFKYDDE-VLVEKYIKGR---ELTV 185

Length = 304

>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed

 Score = 48.9 bits (118), Expect = 2e-06
 Identities = 25/88 (28%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
             G+  +G +PD+I +  D+    + ++  G+P  P   G   S EEA+++A+E+G+PV+
Sbjct: 651 AAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPN--GTATSVEEALEVAEEIGYPVL 708

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQA 253
           ++ +   GGR M +  + +E  + +++A
Sbjct: 709 VRPSYVLGGRAMEIVYDEEELERYMREA 736

Length = 1066

>gnl|CDD|178534 PLN02948, PLN02948, phosphoribosylaminoimidazole carboxylase

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
           P   +IRI+ DK   +      G+P     +  +   E A K  D  G+P+M+K+     
Sbjct: 111 PKSSTIRIIQDKYAQKVHFSKHGIPLPEFME--IDDLESAEKAGDLFGYPLMLKSRRLAY 168

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYV 272
            GRG  +AK  ++         S A AA G    G+Y EK+ 
Sbjct: 169 DGRGNAVAKTEEDL--------SSAVAALGGFERGLYAEKWA 202

Length = 577

>gnl|CDD|237507 PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 165 REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224
           R +G    GPN  + +I G K  A++ M+   +PT    +  ++  ++A+   +    PV
Sbjct: 48  RANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKE--VERKKDALTYIENCELPV 105

Query: 225 MIKATAGGGGRGMRLA---KEPDEFVKLLQQAKSEAAAAF 261
           ++K      G+G+ +A   +     ++++   + E    F
Sbjct: 106 VVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVF 145

Length = 379

>gnl|CDD|216935 pfam02222, ATP-grasp, ATP-grasp domain

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-GGRGMRLAKEPDEFVKLLQ 251
           +  G+PT   +    +S EE ++   ELG+P ++KA  GG  G+G  + +   +      
Sbjct: 2   QKLGLPTPRFAA--AESLEELIEAGQELGYPCVLKARRGGYDGKGQYVVRSEAD------ 53

Query: 252 QAKSEAAAAFGNDGVYLEKYV 272
               +A    G   V +E++V
Sbjct: 54  --IPQAWEELGGGPVIVEEFV 72

This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity. Length = 171

>gnl|CDD|237195 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 28/156 (17%)

Query: 146 MLHPGY----GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201
           +L P        LA+N    +   E G+  +  + + I I  DK    E +K  G+PT P
Sbjct: 72  LLIPLIDPELPLLAQNR---DRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPT-P 127

Query: 202 GSDGLLQSTEEAVKLAD---ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAA 258
            S   L  + E  K A    EL FP+ +K   G    G+    + +E    L+       
Sbjct: 128 KS--YLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEE----LEFLLEY-- 179

Query: 259 AAFGNDGVYLEKYVQNPRHIEF--QVLADKYGNVVH 292
                  + ++++++     E+   VL D  G V+ 
Sbjct: 180 ----VPNLIIQEFIE---GQEYTVDVLCDLNGEVIS 208

Length = 326

>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGR----GMRLAKE 242
           A+E +   GVP   G   +  S EEA + A +LG  V ++KA    GGR    G++LAK 
Sbjct: 7   AKELLAKYGVPVPRG--EVAFSPEEAEEAAKKLGGKVWVVKAQVLAGGRGKAGGVKLAKS 64

Query: 243 PDEFVK 248
           P+E  +
Sbjct: 65  PEEAKE 70

Length = 202

>gnl|CDD|233310 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 168 GINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP--GSDGLLQSTEEAVK--LADELGFP 223
           GI + G    +  +  DK   +   K  G+PT           S +E     +A+ LGFP
Sbjct: 89  GIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGFP 148

Query: 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQV 282
           V++K    G   G+   K  +E    LQ A  E   AF  D  V +E++++  R +E  +
Sbjct: 149 VIVKPAREGSSVGVSKVKSEEE----LQAALDE---AFEYDEEVLVEQFIK-GRELEVSI 200

Query: 283 L 283
           L
Sbjct: 201 L 201

This model describes D-Ala--D-Ala ligase, an enzyme that makes a required precursor of the bacterial cell wall. It also describes some closely related proteins responsible for resistance to glycopeptide antibiotics such as vancomycin. The mechanism of glyopeptide antibiotic resistance involves the production of D-alanine-D-lactate (VanA and VanB families) or D-alanine-D-serine (VanC). The seed alignment contains only chromosomally encoded D-ala--D-ala ligases, but a number of antibiotic resistance proteins score above the trusted cutoff of this model [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 315

>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional

 Score = 44.3 bits (106), Expect = 5e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           V+  R  G+   GP   + ++ G K+ A++ M   G+PT   +       EEA+   DE 
Sbjct: 79  VDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPT--AAYETFTDAEEALAYLDEK 136

Query: 221 GFPVMIKA---TAGGG 233
           G P+++KA    AG G
Sbjct: 137 GAPIVVKADGLAAGKG 152

Length = 420

>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional

 Score = 43.9 bits (105), Expect = 5e-05
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKE 242
           A+E     GVP   G   +  + EEAV+ A+EL G   ++KA    GGR    G++LAK 
Sbjct: 8   AKELFAKYGVPVPRG--IVATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKS 65

Query: 243 PDEFVKLLQQAKSEAAAAFGND 264
           P+E       A+  A    G  
Sbjct: 66  PEE-------AREFAKQILGMT 80

Length = 388

>gnl|CDD|216282 pfam01071, GARS_A, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 242
           G KS A++ MK  G+PT           EEA     E GFP ++KA     G+G+ +A +
Sbjct: 1   GSKSFAKDFMKRHGIPT--AEYETFTDPEEAKSYIREAGFPAVVKADGLAAGKGVIVAMD 58

Query: 243 PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA 284
            +E +K + +   +       + V +E++++     E  VLA
Sbjct: 59  NEEAIKAVDEILEQKKFGEAGEPVVIEEFLEGE---EVSVLA 97

Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786). Length = 193

>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE-LGFPVMIKATAGGG 233
           +P SIR   +K    + +  AG+P  P    + +  +EA +   E LGFPV++K   G G
Sbjct: 110 DPQSIRRCRNKLYTTQLLAKAGIPVPP--TLITRDPDEAAEFVAEHLGFPVVLKPLDGSG 167

Query: 234 GRGMRLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 276
           GRG+ L ++ D E + LL     E     G   + +++Y+   +
Sbjct: 168 GRGVFLVEDADPELLSLL-----ETLTQEGRKLIIVQEYIPKAK 206

Length = 318

>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGRG----MRLAKE 242
           A+E     G+P  PG   +  S EEA + A ELG  PV++KA    GGRG    ++LAK 
Sbjct: 8   AKELFAKYGIPVPPG--YVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKS 65

Query: 243 PDEFVKLLQQAKSEAAAAFGN 263
           P+E       AK  A    G 
Sbjct: 66  PEE-------AKEAAEEILGK 79

Length = 387

>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
             N ++IR   DK     T+++ G+  VP +   L     A+   D L +PV++K   G 
Sbjct: 96  AANTEAIRTCRDKKRLARTLRDHGID-VPRTH-ALALRAVALDALDGLTYPVVVKPRMGS 153

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
           G  G+RL     E       A   A    G     ++ YV+     E+ V
Sbjct: 154 GSVGVRLCASVAEAA-----AHCAALRRAGTRAALVQAYVEGD---EYSV 195

Length = 887

>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 19/99 (19%)

Query: 181 IMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239
           I  DK   +  +  AGVP VP  +G ++ S E+A + A+E+G+PV++K   G  GRG+  
Sbjct: 211 IACDKELTKRLLAAAGVP-VP--EGRVVTSAEDAWEAAEEIGYPVVVKPLDGNHGRGV-- 265

Query: 240 AKEPDEFVKLLQQAKSEAAAAFGN-----DGVYLEKYVQ 273
                  V +  +   E  AA+         V +E+Y+ 
Sbjct: 266 ------TVNITTRE--EIEAAYAVASKESSDVIVERYIP 296

Length = 727

>gnl|CDD|184327 PRK13789, PRK13789, phosphoribosylamine--glycine ligase; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219
           F +   E GI   GP+    ++ G K  A+  MK A +PT   S         ++   + 
Sbjct: 84  FADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPT--ASYKTFTEYSSSLSYLES 141

Query: 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG--VYLEKYVQ 273
              P++IKA     G+G+ +A E     + L++   +    FG  G  V +E++++
Sbjct: 142 EMLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKD--KKFGQSGNQVVIEEFME 195

Length = 426

>gnl|CDD|224102 COG1181, DdlA, D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 163 MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS--DGLLQSTEEAVKLADEL 220
           +    GI ++G    +     DK   +   K  G+P  P         S+    ++ + L
Sbjct: 82  LLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGL 141

Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
           GFP+ +K    G   G        +    LQ A   A     +  V  E+ +   R IE 
Sbjct: 142 GFPLFVKPAREGSSVGRSPVNVEGD----LQSALELAFKY--DRDVLREQGI-TGREIEV 194

Query: 281 QVLADKY 287
            VL + Y
Sbjct: 195 GVLGNDY 201

Length = 317

>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 23/204 (11%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           ++L+   GE+   V   A  +G+  +AV    +  A+ V  A  S  I         +L 
Sbjct: 1   RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV--AHRSYVIN--------MLD 50

Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEM---CREHGINFIGPNPDSIRIMGDKSTAR 189
            + L A I R      P Y      A+  +      + G   + PN  + ++  ++   R
Sbjct: 51  GDALRAVIER----EKPDYIVPEIEAIATDALFELEKEGYFVV-PNARATKLTMNREGIR 105

Query: 190 ETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248
               +  G+PT         S +E  +  +++G+P ++K      G+G  + + P++  K
Sbjct: 106 RLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVRGPEDIEK 163

Query: 249 LLQQAKSEAAAAFGNDGVYLEKYV 272
             + A+  A    G   V +E+++
Sbjct: 164 AWEYAQEGARG--GAGRVIVEEFI 185

This enzyme is an alternative to PurN (TIGR00639) [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 380

>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAK 241
            DK+ + + +   G+P VP + GL  S E+A K  +++ GFPV++K+  G  G G+ LA+
Sbjct: 2   RDKAKSHQLLAKHGIP-VPNT-GLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAE 59

Query: 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275
           +     +LL+  K         + + +++++   
Sbjct: 60  DEQSLEQLLEAFKWL------KNQILVQEFIAEA 87

This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK. Length = 190

>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 7/66 (10%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKE 242
           A++     G+P   G   +  S EEA ++A +LG  PV++KA    GGR    G+++AK 
Sbjct: 8   AKQIFAKYGIPVPRG--YVATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKS 65

Query: 243 PDEFVK 248
            +E   
Sbjct: 66  KEEARA 71

This model is designated subfamily because it does not discriminate the ADP-forming enzyme ((EC 6.2.1.5) from the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half is described by the CoA-ligases model (pfam00549). The C-terminal half is described by the ATP-grasp model (pfam02222). This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G [Energy metabolism, TCA cycle]. Length = 386

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	100.0
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	100.0
COG0439	449	AccC Biotin carboxylase [Lipid metabolism]	100.0
PRK08654	499	pyruvate carboxylase subunit A; Validated	100.0
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	100.0
PRK07178	472	pyruvate carboxylase subunit A; Validated	100.0
PRK12833	467	acetyl-CoA carboxylase biotin carboxylase subunit;	100.0
TIGR00514	449	accC acetyl-CoA carboxylase, biotin carboxylase su	100.0
PRK08462	445	biotin carboxylase; Validated	100.0
PRK08463	478	acetyl-CoA carboxylase subunit A; Validated	100.0
PRK05586	447	biotin carboxylase; Validated	100.0
PRK08591	451	acetyl-CoA carboxylase biotin carboxylase subunit;	100.0
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	100.0
PRK12999	1146	pyruvate carboxylase; Reviewed	100.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	100.0
PRK06111	450	acetyl-CoA carboxylase biotin carboxylase subunit;	100.0
PLN02735	1102	carbamoyl-phosphate synthase	99.97
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.96
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	99.96
PLN02735	1102	carbamoyl-phosphate synthase	99.96
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	99.96
PRK12767	326	carbamoyl phosphate synthase-like protein; Provisi	99.96
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	99.96
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	99.96
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	99.96
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	99.96
TIGR01369	1050	CPSaseII_lrg carbamoyl-phosphate synthase, large s	99.95
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	99.95
PRK07206	416	hypothetical protein; Provisional	99.95
PLN02948	577	phosphoribosylaminoimidazole carboxylase	99.95
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	99.95
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	99.95
PRK05294	1066	carB carbamoyl phosphate synthase large subunit; R	99.95
PRK06849	389	hypothetical protein; Provisional	99.95
PRK12815	1068	carB carbamoyl phosphate synthase large subunit; R	99.95
PRK13789	426	phosphoribosylamine--glycine ligase; Provisional	99.95
PRK00885	420	phosphoribosylamine--glycine ligase; Provisional	99.95
COG0458	400	CarB Carbamoylphosphate synthase large subunit (sp	99.94
PRK05784	486	phosphoribosylamine--glycine ligase; Provisional	99.93
PRK01372	304	ddl D-alanine--D-alanine ligase; Reviewed	99.93
PF15632	329	ATPgrasp_Ter: ATP-grasp in the biosynthetic pathwa	99.93
PLN02257	434	phosphoribosylamine--glycine ligase	99.93
PRK01966	333	ddl D-alanyl-alanine synthetase A; Reviewed	99.92
PRK14569	296	D-alanyl-alanine synthetase A; Provisional	99.92
PRK02186	887	argininosuccinate lyase; Provisional	99.92
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	99.92
PRK14572	347	D-alanyl-alanine synthetase A; Provisional	99.92
PRK14568	343	vanB D-alanine--D-lactate ligase; Provisional	99.92
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	99.92
PF02786	211	CPSase_L_D2: Carbamoyl-phosphate synthase L chain,	99.91
TIGR01205	315	D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a	99.91
PRK14570	364	D-alanyl-alanine synthetase A; Provisional	99.9
COG0151	428	PurD Phosphoribosylamine-glycine ligase [Nucleotid	99.89
PRK14571	299	D-alanyl-alanine synthetase A; Provisional	99.89
PRK13790	379	phosphoribosylamine--glycine ligase; Provisional	99.89
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	99.87
PRK13278	358	purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D	99.86
PRK10446	300	ribosomal protein S6 modification protein; Provisi	99.84
PRK06524	493	biotin carboxylase-like protein; Validated	99.83
TIGR00768	277	rimK_fam alpha-L-glutamate ligases, RimK family. T	99.81
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	99.8
PRK13277	366	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribo	99.79
TIGR02144	280	LysX_arch Lysine biosynthesis enzyme LysX. The fam	99.78
PRK14016	727	cyanophycin synthetase; Provisional	99.78
TIGR03103	547	trio_acet_GNAT GNAT-family acetyltransferase TIGR0	99.77
PF13535	184	ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A	99.74
KOG0237	788	consensus Glycinamide ribonucleotide synthetase (G	99.73
COG0189	318	RimK Glutathione synthase/Ribosomal protein S6 mod	99.71
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.68
COG3919	415	Predicted ATP-grasp enzyme [General function predi	99.65
COG1181	317	DdlA D-alanine-D-alanine ligase and related ATP-gr	99.63
TIGR02068	864	cya_phycin_syn cyanophycin synthetase. Cyanophycin	99.61
PRK02471	752	bifunctional glutamate--cysteine ligase/glutathion	99.61
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.59
TIGR01435	737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	99.56
PF07478	203	Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; In	99.56
PRK12458	338	glutathione synthetase; Provisional	99.54
), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01071">PF01071	194	GARS_A: Phosphoribosylglycinamide synthetase, ATP-	99.54
PF08443	190	RimK: RimK-like ATP-grasp domain; InterPro: IPR013	99.52
PF02222	172	ATP-grasp: ATP-grasp domain; InterPro: IPR003135 T	99.51
PLN02941	328	inositol-tetrakisphosphate 1-kinase	99.47
TIGR01380	312	glut_syn glutathione synthetase, prokaryotic. This	99.47
COG1759	361	5-formaminoimidazole-4-carboxamide-1-beta-D-ribofu	99.47
PRK05246	316	glutathione synthetase; Provisional	99.46
COG2232	389	Predicted ATP-dependent carboligase related to bio	99.4
PRK00696	388	sucC succinyl-CoA synthetase subunit beta; Provisi	99.31
PF02655	161	ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806	99.24
TIGR01016	386	sucCoAbeta succinyl-CoA synthetase, beta subunit.	99.23
PF13549	222	ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.	99.21
TIGR02291	317	rimK_rel_E_lig alpha-L-glutamate ligase-related pr	98.92
COG1821	307	Predicted ATP-utilizing enzyme (ATP-grasp superfam	98.91
PRK14046	392	malate--CoA ligase subunit beta; Provisional	98.86
COG0045	387	SucC Succinyl-CoA synthetase, beta subunit [Energy	98.8
PF08442	202	ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650	98.71
PLN00124	422	succinyl-CoA ligase [GDP-forming] subunit beta; Pr	98.63
PF14397	285	ATPgrasp_ST: Sugar-transfer associated ATP-grasp	98.53
PLN02235	423	ATP citrate (pro-S)-lyase	98.41
PF02955	173	GSH-S_ATP: Prokaryotic glutathione synthetase, ATP	98.35
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	98.24
PF14398	262	ATPgrasp_YheCD: YheC/D like ATP-grasp	98.11
PF06849	124	DUF1246: Protein of unknown function (DUF1246); In	98.06
PF05770	307	Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-	97.72
PF14403	445	CP_ATPgrasp_2: Circularly permuted ATP-grasp type	97.67
PF14305	239	ATPgrasp_TupA: TupA-like ATPgrasp	97.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.98
PF11379	355	DUF3182: Protein of unknown function (DUF3182); In	96.81
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.66
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	96.59
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.48
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.44
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	96.4
CHL00194	317	ycf39 Ycf39; Provisional	96.38
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.21
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.17
PRK10669	558	putative cation:proton antiport protein; Provision	96.14
PF03133	292	TTL: Tubulin-tyrosine ligase family; InterPro: IPR	96.05
PLN00016	378	RNA-binding protein; Provisional	96.05
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.96
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.84
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.79
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	95.67
KOG2799	434	consensus Succinyl-CoA synthetase, beta subunit [E	95.56
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.52
KOG3895	488	consensus Synaptic vesicle protein Synapsin [Signa	95.5
PF01820	117	Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; In	95.47
COG2910	211	Putative NADH-flavin reductase [General function p	95.46
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.44
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.41
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.28
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	95.17
PRK05993	277	short chain dehydrogenase; Provisional	95.15
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.15
PRK04148	134	hypothetical protein; Provisional	95.13
PRK08177	225	short chain dehydrogenase; Provisional	95.08
KOG1447	412	consensus GTP-specific succinyl-CoA synthetase, be	95.02
PRK05693	274	short chain dehydrogenase; Provisional	94.95
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.94
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.89
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.61
PF02750	203	Synapsin_C: Synapsin, ATP binding domain; InterPro	94.55
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.45
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.43
PRK08017	256	oxidoreductase; Provisional	94.37
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.35
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.3
PRK07326	237	short chain dehydrogenase; Provisional	94.23
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.22
PRK12828	239	short chain dehydrogenase; Provisional	94.2
PRK06182	273	short chain dehydrogenase; Validated	94.16
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.15
PRK08264	238	short chain dehydrogenase; Validated	94.12
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.05
PLN02572	442	UDP-sulfoquinovose synthase	94.05
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.04
PRK12829	264	short chain dehydrogenase; Provisional	94.04
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	94.02
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	93.99
PRK06500	249	short chain dehydrogenase; Provisional	93.98
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.94
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.94
PRK06483	236	dihydromonapterin reductase; Provisional	93.9
PLN02240	352	UDP-glucose 4-epimerase	93.9
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.88
PRK07856	252	short chain dehydrogenase; Provisional	93.87
PRK13303	265	L-aspartate dehydrogenase; Provisional	93.78
PLN03209	576	translocon at the inner envelope of chloroplast su	93.77
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	93.73
PLN02653	340	GDP-mannose 4,6-dehydratase	93.69
PRK08267	260	short chain dehydrogenase; Provisional	93.68
PRK06194	287	hypothetical protein; Provisional	93.67
PRK07236	386	hypothetical protein; Provisional	93.63
PRK08219	227	short chain dehydrogenase; Provisional	93.6
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	93.57
PRK06953	222	short chain dehydrogenase; Provisional	93.5
PRK05562	223	precorrin-2 dehydrogenase; Provisional	93.5
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	93.47
PRK06398	258	aldose dehydrogenase; Validated	93.47
PRK08643	256	acetoin reductase; Validated	93.44
PRK09496	453	trkA potassium transporter peripheral membrane com	93.44
PRK06057	255	short chain dehydrogenase; Provisional	93.43
PRK09135	249	pteridine reductase; Provisional	93.4
PRK07774	250	short chain dehydrogenase; Provisional	93.39
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	93.37
PRK08265	261	short chain dehydrogenase; Provisional	93.35
PRK07067	257	sorbitol dehydrogenase; Provisional	93.33
PRK07074	257	short chain dehydrogenase; Provisional	93.32
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.29
PRK12742	237	oxidoreductase; Provisional	93.27
PRK06988	312	putative formyltransferase; Provisional	93.26
PRK07825	273	short chain dehydrogenase; Provisional	93.22
PRK12939	250	short chain dehydrogenase; Provisional	93.22
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	93.2
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	93.18
PRK10537	393	voltage-gated potassium channel; Provisional	93.17
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.17
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.17
PLN02686	367	cinnamoyl-CoA reductase	93.14
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	93.1
PRK07478	254	short chain dehydrogenase; Provisional	93.1
PRK07060	245	short chain dehydrogenase; Provisional	93.09
PRK07024	257	short chain dehydrogenase; Provisional	93.06
PRK07577	234	short chain dehydrogenase; Provisional	93.02
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	92.97
PRK08703	239	short chain dehydrogenase; Provisional	92.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.94
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	92.94
PRK06180	277	short chain dehydrogenase; Provisional	92.89
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	92.88
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.85
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.85
PRK09496	453	trkA potassium transporter peripheral membrane com	92.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.75
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	92.73
PRK06138	252	short chain dehydrogenase; Provisional	92.69
PRK06482	276	short chain dehydrogenase; Provisional	92.68
PRK06139	330	short chain dehydrogenase; Provisional	92.67
PRK07063	260	short chain dehydrogenase; Provisional	92.66
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	92.58
PRK12824	245	acetoacetyl-CoA reductase; Provisional	92.57
PRK07454	241	short chain dehydrogenase; Provisional	92.54
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.52
PLN00198	338	anthocyanidin reductase; Provisional	92.5
PRK07576	264	short chain dehydrogenase; Provisional	92.45
PRK06196	315	oxidoreductase; Provisional	92.44
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	92.44
PRK07453	322	protochlorophyllide oxidoreductase; Validated	92.43
PRK07102	243	short chain dehydrogenase; Provisional	92.43
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.42
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.42
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	92.41
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.41
PLN02778	298	3,5-epimerase/4-reductase	92.35
PRK09291	257	short chain dehydrogenase; Provisional	92.33
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.3
PRK06947	248	glucose-1-dehydrogenase; Provisional	92.29
PRK06179	270	short chain dehydrogenase; Provisional	92.28
PRK10675	338	UDP-galactose-4-epimerase; Provisional	92.27
PRK05876	275	short chain dehydrogenase; Provisional	92.26
PRK06940	275	short chain dehydrogenase; Provisional	92.23
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	92.23
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.17
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.15
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.15
PRK05875	276	short chain dehydrogenase; Provisional	92.12
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	92.09
PRK08226	263	short chain dehydrogenase; Provisional	92.07
PRK12743	256	oxidoreductase; Provisional	92.07
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.06
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.05
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.03
PRK07814	263	short chain dehydrogenase; Provisional	92.03
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.99
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	91.99
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.93
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	91.92
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.92
PRK06172	253	short chain dehydrogenase; Provisional	91.89
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	91.88
PRK07806	248	short chain dehydrogenase; Provisional	91.85
PRK09126	392	hypothetical protein; Provisional	91.85
PRK06523	260	short chain dehydrogenase; Provisional	91.82
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.8
PRK08263	275	short chain dehydrogenase; Provisional	91.79
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	91.78
COG1832	140	Predicted CoA-binding protein [General function pr	91.76
PRK07890	258	short chain dehydrogenase; Provisional	91.64
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.63
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	91.6
COG2308	488	Uncharacterized conserved protein [Function unknow	91.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.57
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	91.56
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	91.55
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	91.54
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	91.53
PRK05868	372	hypothetical protein; Validated	91.52
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	91.52
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	91.48
PRK05866	293	short chain dehydrogenase; Provisional	91.46
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	91.45
PRK06841	255	short chain dehydrogenase; Provisional	91.43
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	91.4
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	91.39
PRK06701	290	short chain dehydrogenase; Provisional	91.36
PRK06914	280	short chain dehydrogenase; Provisional	91.35
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	91.34
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	91.33
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	91.31
PRK08163	396	salicylate hydroxylase; Provisional	91.26
PRK08628	258	short chain dehydrogenase; Provisional	91.26
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	91.24
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	91.24
PRK09072	263	short chain dehydrogenase; Provisional	91.23
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	91.21
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	91.2
PRK09134	258	short chain dehydrogenase; Provisional	91.17
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.13
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.13
PRK10538	248	malonic semialdehyde reductase; Provisional	91.11
PLN02253	280	xanthoxin dehydrogenase	91.1
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.09
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	91.08
PRK08251	248	short chain dehydrogenase; Provisional	91.07
PRK08589	272	short chain dehydrogenase; Validated	91.03
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	91.01
PF13727	175	CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.	91.01
cd03466	429	Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup	91.0
COG2344	211	AT-rich DNA-binding protein [General function pred	90.96
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.95
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.95
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	90.94
PRK06185	407	hypothetical protein; Provisional	90.93
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.86
PRK08303	305	short chain dehydrogenase; Provisional	90.8
PRK12446	352	undecaprenyldiphospho-muramoylpentapeptide beta-N-	90.78
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	90.77
PRK07023	243	short chain dehydrogenase; Provisional	90.75
PRK06126	545	hypothetical protein; Provisional	90.74
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	90.74
PRK06753	373	hypothetical protein; Provisional	90.73
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	90.73
PRK07831	262	short chain dehydrogenase; Provisional	90.7
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	90.68
PRK09620	229	hypothetical protein; Provisional	90.67
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	90.66
TIGR02049	403	gshA_ferroox glutamate--cysteine ligase, T. ferroo	90.66
PRK06198	260	short chain dehydrogenase; Provisional	90.66
PRK05717	255	oxidoreductase; Validated	90.6
PRK12367	245	short chain dehydrogenase; Provisional	90.6
PRK07035	252	short chain dehydrogenase; Provisional	90.59
PRK06128	300	oxidoreductase; Provisional	90.55
PRK05867	253	short chain dehydrogenase; Provisional	90.55
PRK06949	258	short chain dehydrogenase; Provisional	90.53
PRK06475	400	salicylate hydroxylase; Provisional	90.52
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	90.51
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	90.49
PF04174	330	CP_ATPgrasp_1: A circularly permuted ATPgrasp ; In	90.48
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.48
PRK06847	375	hypothetical protein; Provisional	90.47
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	90.46
PRK00124	151	hypothetical protein; Validated	90.46
PRK08278	273	short chain dehydrogenase; Provisional	90.45
PRK05865	854	hypothetical protein; Provisional	90.42
PLN02896	353	cinnamyl-alcohol dehydrogenase	90.34
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	90.29
PRK08213	259	gluconate 5-dehydrogenase; Provisional	90.29
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.23
PRK07109	334	short chain dehydrogenase; Provisional	90.23
PRK12827	249	short chain dehydrogenase; Provisional	90.19
PLN02214	342	cinnamoyl-CoA reductase	90.16
PRK07062	265	short chain dehydrogenase; Provisional	90.16
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	90.04
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.01
PRK06181	263	short chain dehydrogenase; Provisional	89.99
PRK08340	259	glucose-1-dehydrogenase; Provisional	89.98
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	89.97
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	89.96
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	89.96
PRK06197	306	short chain dehydrogenase; Provisional	89.9
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.89
PRK10637	457	cysG siroheme synthase; Provisional	89.85
PRK08309	177	short chain dehydrogenase; Provisional	89.84
PRK00048	257	dihydrodipicolinate reductase; Provisional	89.84
PRK06125	259	short chain dehydrogenase; Provisional	89.83
PRK06484	520	short chain dehydrogenase; Validated	89.82
PRK08339	263	short chain dehydrogenase; Provisional	89.77
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	89.74
COG1671	150	Uncharacterized protein conserved in bacteria [Fun	89.71
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	89.7
PRK08132	547	FAD-dependent oxidoreductase; Provisional	89.7
PRK13304	265	L-aspartate dehydrogenase; Reviewed	89.66
PRK06101	240	short chain dehydrogenase; Provisional	89.66
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.63
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	89.6
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	89.59
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	89.52
PRK05884	223	short chain dehydrogenase; Provisional	89.52
PRK08862	227	short chain dehydrogenase; Provisional	89.48
TIGR01285	432	nifN nitrogenase molybdenum-iron cofactor biosynth	89.47
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	89.43
PRK07775	274	short chain dehydrogenase; Provisional	89.42
KOG2158	565	consensus Tubulin-tyrosine ligase-related protein	89.39
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.37
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.34
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	89.32
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	89.24
PRK08085	254	gluconate 5-dehydrogenase; Provisional	89.22
PRK09242	257	tropinone reductase; Provisional	89.22
PRK12937	245	short chain dehydrogenase; Provisional	89.19
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	89.13
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.13
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	89.1
PLN02871	465	UDP-sulfoquinovose:DAG sulfoquinovosyltransferase	89.08
PF02639	130	DUF188: Uncharacterized BCR, YaiI/YqxD family COG1	89.06
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.01
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	88.99
PLN02740	381	Alcohol dehydrogenase-like	88.96
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	88.96
TIGR01283	456	nifE nitrogenase molybdenum-iron cofactor biosynth	88.89
PRK09186	256	flagellin modification protein A; Provisional	88.88
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	88.84
PLN02427	386	UDP-apiose/xylose synthase	88.82
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	88.78
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.77
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	88.77
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.73
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	88.66
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	88.65
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	88.63
PRK05854	313	short chain dehydrogenase; Provisional	88.62
cd01965	428	Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_l	88.55
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	88.49
PRK07097	265	gluconate 5-dehydrogenase; Provisional	88.49
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	88.49
PRK07045	388	putative monooxygenase; Reviewed	88.48
PRK07677	252	short chain dehydrogenase; Provisional	88.47
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	88.45
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.42
PRK08244	493	hypothetical protein; Provisional	88.42
PLN02166	436	dTDP-glucose 4,6-dehydratase	88.41
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	88.38
PRK06114	254	short chain dehydrogenase; Provisional	88.32
PRK05872	296	short chain dehydrogenase; Provisional	88.3
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.28
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	88.25
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.23
PRK12746	254	short chain dehydrogenase; Provisional	88.21
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	88.16
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	88.13
PRK07538	413	hypothetical protein; Provisional	88.11
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	88.11
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	88.1
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.99
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	87.96
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	87.95
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	87.93
PRK10262	321	thioredoxin reductase; Provisional	87.92
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	87.92
PRK08328	231	hypothetical protein; Provisional	87.91
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	87.87
PRK08013	400	oxidoreductase; Provisional	87.87
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.82
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	87.81
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	87.81
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	87.79
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	87.76
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.76
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	87.74
PLN02206	442	UDP-glucuronate decarboxylase	87.73
PRK06567	1028	putative bifunctional glutamate synthase subunit b	87.72
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	87.63
PLN02650	351	dihydroflavonol-4-reductase	87.61
PRK06124	256	gluconate 5-dehydrogenase; Provisional	87.6
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	87.6
PRK12831	464	putative oxidoreductase; Provisional	87.59
TIGR02415	254	23BDH acetoin reductases. One member of this famil	87.59
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	87.57
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.53
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	87.47
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	87.45
PF13477	139	Glyco_trans_4_2: Glycosyl transferase 4-like	87.45
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.43
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	87.39
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	87.39
PRK12935	247	acetoacetyl-CoA reductase; Provisional	87.36
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.31
PRK05650	270	short chain dehydrogenase; Provisional	87.31
PRK11579	346	putative oxidoreductase; Provisional	87.23
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	87.19
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	87.18
PLN02256	304	arogenate dehydrogenase	87.15
cd01976	421	Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II:	87.11
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	87.1
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	87.07
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	86.97
PRK07588	391	hypothetical protein; Provisional	86.97
PRK07791	286	short chain dehydrogenase; Provisional	86.96
TIGR02263	380	benz_CoA_red_C benzoyl-CoA reductase, subunit C. T	86.96
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	86.95
PRK12744	257	short chain dehydrogenase; Provisional	86.88
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.88
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	86.87
PRK13512	438	coenzyme A disulfide reductase; Provisional	86.85
PRK07578	199	short chain dehydrogenase; Provisional	86.84
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	86.82
PRK08936	261	glucose-1-dehydrogenase; Provisional	86.79
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	86.73
PRK06184	502	hypothetical protein; Provisional	86.72
PRK06270	341	homoserine dehydrogenase; Provisional	86.72
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	86.69
PRK06720	169	hypothetical protein; Provisional	86.63
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.6
PRK07208	479	hypothetical protein; Provisional	86.59
PRK07832	272	short chain dehydrogenase; Provisional	86.59
PRK12779	944	putative bifunctional glutamate synthase subunit b	86.57
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.5
PRK14478	475	nitrogenase molybdenum-cofactor biosynthesis prote	86.48
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	86.48
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.45
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	86.41

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=100.00  E-value=1.1e-50  Score=378.75  Aligned_cols=241  Identities=55%  Similarity=0.925  Sum_probs=237.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||.|+|+++++++|+++++|+.+++|+++++..+.+..++|+.+.++|.+..++|++.++|++++++.+.++|+|
T Consensus         1 mf~KiLIANRGEIAcRVIRtar~lGi~tVAVYSdaDa~A~hV~~ADEAv~iGpapaaeSYL~~dkIi~Aa~~tGA~AIHP   80 (645)
T COG4770           1 MFSKILIANRGEIACRVIRTARDLGIRTVAVYSDADADALHVRMADEAVHIGPAPAAESYLDIDKIIDAARRTGAQAIHP   80 (645)
T ss_pred             CcceEEEeccchhhHHHHHHHHHcCCceEEEEecCCCCchhhhhcchhhhcCCCchhhhhccHHHHHHHHHHhCcccccC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      +|||++||+.+++.+++.|+.++||++++|+.+.||...|+++.++|+|+.|+|.....+.+++..+++++|||++||+.
T Consensus        81 GYGFLSENa~FA~a~~~aGlvfIGP~~~aI~aMGdK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGyPVlIKAs  160 (645)
T COG4770          81 GYGFLSENADFAQAVEDAGLVFIGPSAGAIRAMGDKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGYPVLIKAS  160 (645)
T ss_pred             CccccccCHHHHHHHHHCCcEEECCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+|++++.+.+|+.+.++..+++...+|+++.+++|+|+.-++++.++++.|++|+++++++|+||+||||||+||
T Consensus       161 aGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PRHIEiQV~aD~HGNvv~LgERdCSlQRRhQKVIE  240 (645)
T COG4770         161 AGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPRHIEIQVFADQHGNVVHLGERDCSLQRRHQKVIE  240 (645)
T ss_pred             cCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCceEEEEEEecCCCCEEEeeccccchhhhcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      |
T Consensus       241 E  241 (645)
T COG4770         241 E  241 (645)
T ss_pred             c
Confidence            8

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-47  Score=353.22  Aligned_cols=237  Identities=61%  Similarity=0.987  Sum_probs=233.7

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCc
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF  153 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~  153 (313)
                      |||.++|+++.++++.++++|+++++++++++..+.+.+.+|+.+++++.+...+|++.+.+++++++.+..+|+|+|||
T Consensus         1 iLiANRGEIAcRVirTakkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a~~~~SYL~~~~I~~aa~~tgaqaihPGYGF   80 (670)
T KOG0238|consen    1 ILIANRGEIACRVIRTAKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPAPAAQSYLRMDKIIDAAKRTGAQAIHPGYGF   80 (670)
T ss_pred             CeeccccceeehhhhHHHHhCCeEEEEEccCccccceeecccceeecCCCchhhhhhhHHHHHHHHHhcCCceecCCccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCC
Q 021372          154 LAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGG  233 (313)
Q Consensus       154 ~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~g  233 (313)
                      ++|+..+++.|++.|+.|+||++.+|+.+.||...+++++++|+|+.|+|.....+.+++.+.++++|||+++|+..|+|
T Consensus        81 LSEn~~Fae~c~~~Gi~FiGP~~~aIrdMG~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGG  160 (670)
T KOG0238|consen   81 LSENAEFAELCEDAGITFIGPPPSAIRDMGDKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGYPVMIKATAGGG  160 (670)
T ss_pred             cccchHHHHHHHHcCCeEECCCHHHHHHhcchHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCCcEEEEeccCCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             CccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          234 GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       234 g~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      |+|++++.+++|+++.++..++++..+|+++.+|+|+||+.++++.|++++|++|+.++++||+||+|||+||+|||
T Consensus       161 GkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRHiEvQv~gD~hGnav~l~ERdCSvQRRnQKiiEE  237 (670)
T KOG0238|consen  161 GKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRHIEVQVFGDKHGNAVHLGERDCSVQRRNQKIIEE  237 (670)
T ss_pred             CcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCceEEEEEEecCCCcEEEecccccchhhhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998

>COG0439 AccC Biotin carboxylase [Lipid metabolism]

Probab=100.00  E-value=4.4e-44  Score=337.58  Aligned_cols=242  Identities=58%  Similarity=0.964  Sum_probs=233.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||.++|.++..++++++++|++++++++.++....+..++|+.++++|.++.++|.++++++..+...+.|+|+|
T Consensus         1 m~~kiLIanrGeia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~~~~~~~syl~i~~ii~~a~~~gadai~p   80 (449)
T COG0439           1 MFKKILIANRGEIAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIGPAPSADSYLNIDAIIAAAEETGADAIHP   80 (449)
T ss_pred             CCceEEEecCchhHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcCCccchhhhhhHHHHHHHHHhcCCceEcc
Confidence            68999999999999999999999999999999999999999999999999988788899999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++||++|+..+++.+++.|+.++||++++++.+.||..++++++++|||+||+....+.+.+++.++++++||||||||.
T Consensus        81 Gygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGyPVivKa~  160 (449)
T COG0439          81 GYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGYPVIVKAA  160 (449)
T ss_pred             cchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999655578889999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||++|++.++|.+++..+..+....|+++.+++||||++++++.+++++|++|+++++++|+|++|||+||++|
T Consensus       161 ~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~rhievqv~gD~~g~~i~l~eRdcsiqrr~qkvie  240 (449)
T COG0439         161 AGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPRHIEVQVLGDGHGNVIHLGERDCSIQRRHQKVIE  240 (449)
T ss_pred             CCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCceEEEEEEEcCcccEEEEEeccCCCcCCccceee
Confidence            99999999999999999999999999999899989999999999999999999999999999999999999999999999


Q ss_pred             ee
Q 021372          310 EI  311 (313)
Q Consensus       310 ~~  311 (313)
                      |.
T Consensus       241 ea  242 (449)
T COG0439         241 EA  242 (449)
T ss_pred             ec
Confidence            85

>PRK08654 pyruvate carboxylase subunit A; Validated

Probab=100.00  E-value=2.3e-42  Score=335.04  Aligned_cols=241  Identities=51%  Similarity=0.865  Sum_probs=226.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|.++.+++++++++|+++++++++++..+.+.+++|+.+.+++.+..++|.+.+.|+++++++++|+|+|
T Consensus         1 ~~~kvLIan~Geia~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~p   80 (499)
T PRK08654          1 MFKKILIANRGEIAIRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHP   80 (499)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEE
Confidence            57999999999999999999999999999999888888888899999998887777788999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++|+++|+..+++.+++.|++++||+++++..+.||..++++++++|||+||++...+.+.+++.++++++|||+||||.
T Consensus        81 g~gflsE~~~~a~~~e~~gi~~iGps~~~i~~~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igyPvvIKp~  160 (499)
T PRK08654         81 GYGFLAENPEFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGYPVIIKAS  160 (499)
T ss_pred             CCCccccCHHHHHHHHHCCCcEECCCHHHHHHhCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCCCEEEEeC
Confidence            99999999999999999999999999999999999999999999999999998632378999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+|++++++.+||.++++.+.......++++.+++|+||+|++|+++++++|++|+++++++|+|++||++|+++|
T Consensus       161 ~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~r~ieVqvl~d~~G~vv~l~~recsiqrr~qk~ie  240 (499)
T PRK08654        161 AGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKLIE  240 (499)
T ss_pred             CCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeeccccccCccceEE
Confidence            99999999999999999999999887766667778999999999889999999999999999999999999999999988


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (499)
T PRK08654        241 E  241 (499)
T ss_pred             E
Confidence            6

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=100.00  E-value=7.4e-43  Score=335.19  Aligned_cols=240  Identities=52%  Similarity=0.878  Sum_probs=230.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCC-CCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP-SSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~-~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.+||||.++|+++.+++|++.++|++++++++..+..+.|...+|+.|.++... ..+.|++++.+++++++.+.|+|+
T Consensus         6 ~~~KvLVANRgEIAIRvFRAa~ELgi~TVAIys~ED~~S~HR~KADEsY~iG~~~~Pi~aYL~IdeII~iAk~~gaDaIh   85 (1149)
T COG1038           6 KIKKVLVANRGEIAIRVFRAANELGIKTVAIYSEEDRLSLHRFKADESYLIGEGKGPVEAYLSIDEIIRIAKRSGADAIH   85 (1149)
T ss_pred             hhheeeeeccchhhHHHHHHHHhcCceEEEEeeccccchhhhccccceeeecCCCCchHHhccHHHHHHHHHHcCCCeec
Confidence            4799999999999999999999999999999999999999999999999987542 246689999999999999999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      |+||+++|+..+++.|.+.||.|+||.++.+..+.||...+..+.++|+|+.|.....+++.+++.+++++.|||+++|.
T Consensus        86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gyPvmiKA  165 (1149)
T COG1038          86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGYPVMIKA  165 (1149)
T ss_pred             CCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999987788899999999999999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH  308 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i  308 (313)
                      .+|+||+|++++.+.++|.+.+.++.+++..+|+++.+++|+||+.++++.|++++|.+|+++|++||+||+||||||+|
T Consensus       166 ~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pkHIEVQiLgD~~GnvvHLfERDCSvQRRhQKVV  245 (1149)
T COG1038         166 AAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDTHGNVVHLFERDCSVQRRHQKVV  245 (1149)
T ss_pred             ccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcceeEEEEeecCCCCEEEEeecccchhhccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             E
Q 021372          309 T  309 (313)
Q Consensus       309 e  309 (313)
                      |
T Consensus       246 E  246 (1149)
T COG1038         246 E  246 (1149)
T ss_pred             E
Confidence            7

>PRK07178 pyruvate carboxylase subunit A; Validated

Probab=100.00  E-value=1.8e-40  Score=321.25  Aligned_cols=240  Identities=52%  Similarity=0.855  Sum_probs=222.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |.+||||+|+|+++++++++++++|+++++++++++..+.+.+++|+.+.+++.+. ++|.+.+.|+++|+++++|+|+|
T Consensus         1 ~~~kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~-~~y~d~~~i~~~a~~~~~D~I~p   79 (472)
T PRK07178          1 MIKKILIANRGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPL-AGYLNPRRLVNLAVETGCDALHP   79 (472)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCch-hhhcCHHHHHHHHHHHCCCEEEe
Confidence            47899999999999999999999999999999999999999999999998865443 77999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++|+++|+..+++.+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus        80 g~g~lse~~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igyPvvvKp~  159 (472)
T PRK07178         80 GYGFLSENAELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGYPVMLKAT  159 (472)
T ss_pred             CCCCcccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCCcEEEEeC
Confidence            99999999889999999999999999999999999999999999999999998633478899999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||+++++.+||.++++.+..+....+++.++++|+||++++|+++++++|.+|+++++++++|+++|++++.+|
T Consensus       160 ~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~~eiev~v~~d~~G~~v~~~er~~s~~~~~~~~~e  239 (472)
T PRK07178        160 SGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNPKHIEVQILADSHGNVVHLFERDCSIQRRNQKLIE  239 (472)
T ss_pred             CCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCeEEEEEEEEECCCCEEEEEccccceEecCcceEE
Confidence            99999999999999999999998877666666677899999998889999999999999999999999999999999876


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       240 ~  240 (472)
T PRK07178        240 I  240 (472)
T ss_pred             E
Confidence            4

>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional

Probab=100.00  E-value=3.9e-40  Score=318.50  Aligned_cols=241  Identities=50%  Similarity=0.837  Sum_probs=221.1

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +|++||||+|+|+++++++++++++|+++++++++.+....+..++|+.+.++|....++|.+.+.++++++++++|+|+
T Consensus         3 ~~~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~   82 (467)
T PRK12833          3 SRIRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIH   82 (467)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEE
Confidence            35899999999999999999999999999999887777778888999999887767777899999999999999999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      |++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||
T Consensus        83 pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igyPvvvKp  162 (467)
T PRK12833         83 PGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGYPLMIKA  162 (467)
T ss_pred             ECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEE
Confidence            99999999988889999999999999999999999999999999999999999853477899999999999999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH  308 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i  308 (313)
                      ..|+||+|++++++.+||.++++.+..+....++++.+++|+||++++|+++++++|++ .++++++++|++||++++.+
T Consensus       163 ~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~~ei~v~v~~dg~-~~~~~~~~~~~~~r~~~ki~  241 (467)
T PRK12833        163 AAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARARHIEVQILGDGE-RVVHLFERECSLQRRRQKIL  241 (467)
T ss_pred             CCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEeCCC-cEEEEEEeecccccCCccEE
Confidence            99999999999999999999999887766666777889999999976999999999976 78999999999999999988


Q ss_pred             Ee
Q 021372          309 TE  310 (313)
Q Consensus       309 e~  310 (313)
                      ++
T Consensus       242 e~  243 (467)
T PRK12833        242 EE  243 (467)
T ss_pred             EE
Confidence            76

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit

Probab=100.00  E-value=1.2e-39  Score=314.15  Aligned_cols=241  Identities=63%  Similarity=1.044  Sum_probs=220.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |+|||||+|+|.++..++++++++|++|++++++++..+++..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus         1 ~~kkili~g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p   80 (449)
T TIGR00514         1 MLDKILIANRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHP   80 (449)
T ss_pred             CcceEEEeCCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEe
Confidence            58899999999999999999999999999998877777788899999998866666678999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++++++|+..++..+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||.
T Consensus        81 g~g~~se~~~~a~~~e~~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~PvvvKP~  160 (449)
T TIGR00514        81 GYGFLSENANFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGYPVIIKAT  160 (449)
T ss_pred             CCCccccCHHHHHHHHHCCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCCCEEEEeC
Confidence            99999999888899999999999999999999999999999999999999997534678999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||+++++.+|+.++++.+.......++...+|+||||+|++|++++++.|.+|+++++++++|+++++++++++
T Consensus       161 ~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~  240 (449)
T TIGR00514       161 AGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLE  240 (449)
T ss_pred             CCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCCeEEEEEEEEcCCCCEEEEeccccCceecccceEE
Confidence            99999999999999999999998766554455567899999999888999999999899999999999999999988876


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (449)
T TIGR00514       241 E  241 (449)
T ss_pred             E
Confidence            5

This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.

>PRK08462 biotin carboxylase; Validated

Probab=100.00  E-value=1.9e-39  Score=312.62  Aligned_cols=241  Identities=55%  Similarity=0.915  Sum_probs=221.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .+|||||+|+|.++.+++++++++|++|++++++++..+++..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus         3 ~~k~ili~~~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p   82 (445)
T PRK08462          3 EIKRILIANRGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP   82 (445)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence            37999999999999999999999999999999988888899999999998876666678999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++++++|+..+++.++++|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||.
T Consensus        83 g~g~lse~~~~a~~~e~~Gi~~~g~~~~~~~~~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~PvvvKP~  162 (445)
T PRK08462         83 GYGFLSENQNFVEICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGYPVILKAA  162 (445)
T ss_pred             CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEeC
Confidence            99999999899999999999999999999999999999999999999999997534678999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||++++|.+||.+++.....+....++++.+++||||+|++|++++++++.+|+++++++++|+++|++++.++
T Consensus       163 ~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~~~~~~~  242 (445)
T PRK08462        163 AGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRHIEVQILGDKHGNVIHVGERDCSLQRRHQKLIE  242 (445)
T ss_pred             CCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCeEEEEEEEECCCCCEEEEEeccccceecccceEE
Confidence            99999999999999999999987665544445567899999999878999999999889999999999999999888776


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       243 ~  243 (445)
T PRK08462        243 E  243 (445)
T ss_pred             E
Confidence            4

>PRK08463 acetyl-CoA carboxylase subunit A; Validated

Probab=100.00  E-value=3.4e-39  Score=312.65  Aligned_cols=240  Identities=48%  Similarity=0.829  Sum_probs=218.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|.++.+++++++++|+++++++++++..+.+.+++|+.+.+++.+ ..+|.+.+.++++|+++++|+|+|
T Consensus         1 ~~kkiLi~~~ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~-~~~y~d~~~i~~~a~~~~iDaI~p   79 (478)
T PRK08463          1 MIHKILIANRGEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDP-IKGYLDVKRIVEIAKACGADAIHP   79 (478)
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCc-hhcccCHHHHHHHHHHhCCCEEEE
Confidence            5799999999999999999999999999999988888888889999999886543 477899999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc-CCCHHHHHHHHHHhCCcEEEee
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~-~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      ++++++|+..+++.+++.|++++|++++++..+.||..++++++++|||+|+++... ..+.+++.++++++|||+|+||
T Consensus        80 g~g~lsE~~~~a~~~e~~Gi~~iGps~~~i~~~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igyPvvvKP  159 (478)
T PRK08463         80 GYGFLSENYEFAKAVEDAGIIFIGPKSEVIRKMGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGYPVILKA  159 (478)
T ss_pred             CCCccccCHHHHHHHHHCCCceecCCHHHHHhhCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCCCEEEEe
Confidence            999999998899999999999999999999999999999999999999998864222 2578889899999999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH  308 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i  308 (313)
                      ..|+||+|++++++.+|+.++++.+..+....++++.+++|+||+|++|+++++++|..|+++++++|+|+++|++|+.+
T Consensus       160 ~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~~iev~v~~d~~g~v~~~~er~~s~~~~~~~~i  239 (478)
T PRK08463        160 SGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQRRHQKVI  239 (478)
T ss_pred             CCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEeccCCccccccCceE
Confidence            99999999999999999999999876655555677899999999988999999999998999999999999999999887


Q ss_pred             Ee
Q 021372          309 TE  310 (313)
Q Consensus       309 e~  310 (313)
                      ++
T Consensus       240 e~  241 (478)
T PRK08463        240 EI  241 (478)
T ss_pred             EE
Confidence            65

>PRK05586 biotin carboxylase; Validated

Probab=100.00  E-value=3.4e-39  Score=310.83  Aligned_cols=241  Identities=58%  Similarity=1.016  Sum_probs=220.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|.++.+++++++++|++++.++++.+..+++..++|+.+.+++....+.|.+.+.++++|+++++|+|+|
T Consensus         1 ~~kkvli~g~G~~~~~~~~aa~~lG~~~v~v~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~~~~~i~~~~~~~~~d~i~p   80 (447)
T PRK05586          1 MFKKILIANRGEIAVRIIRACREMGIETVAVYSEADKDALHVQLADEAVCIGPASSKDSYLNIQNIISATVLTGAQAIHP   80 (447)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCcEEEEcChHhccCcchhhCCEEEEeCCCChhhcccCHHHHHHHHHHcCCCEEEc
Confidence            57999999999999999999999999999887776777778889999998776556667888899999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++++++|+..++..++..|++++|++++++..+.||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus        81 ~~~~~~E~~~~a~~~~~~gi~~~g~s~~~~~~~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igyPvvvKP~  160 (447)
T PRK05586         81 GFGFLSENSKFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGYPVMVKAS  160 (447)
T ss_pred             CccccccCHHHHHHHHHCCCcEECcCHHHHHhhCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999998534678999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+|++++++.+|+.++++.+.......++++.+++|+||+|++|+++++++|..|+++++++++|+++|+++++++
T Consensus       161 ~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~~ei~v~v~~d~~G~~~~~~~~~~~~~~~~~~~~~  240 (447)
T PRK05586        161 AGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENPKHIEFQILGDNYGNVVHLGERDCSLQRRNQKVLE  240 (447)
T ss_pred             CCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCeEEEEEEEECCCCCEEEEeceecceEecccceEE
Confidence            99999999999999999999998877665556667899999999888999999999999999999999999999998877


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (447)
T PRK05586        241 E  241 (447)
T ss_pred             E
Confidence            4

>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=100.00  E-value=2.7e-38  Score=305.08  Aligned_cols=241  Identities=60%  Similarity=1.000  Sum_probs=218.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |||||||+|+|.++..++++++++|+++++++++++..+.+..++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus         1 ~~k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p   80 (451)
T PRK08591          1 MFDKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHP   80 (451)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEE
Confidence            57999999999999999999999999999998887777777889999987766666677889999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++++++|+..++..+++.|++++|++++++..+.||..++++|+++|||+|+++...+.+.+++.++++.++||+|+||.
T Consensus        81 ~~~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~PvvvKP~  160 (451)
T PRK08591         81 GYGFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGYPVIIKAT  160 (451)
T ss_pred             CCCccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence            99989998888899999999999999999999999999999999999999997433678999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||+++++.+|+.++++.+.......+++..+++||||+|++|+++++++|++|+++++++++|++++++++.++
T Consensus       161 ~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~  240 (451)
T PRK08591        161 AGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLE  240 (451)
T ss_pred             CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEecccccceecceeEEE
Confidence            99999999999999999999998876554445567899999999878999999999999999999999999998887765


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (451)
T PRK08591        241 E  241 (451)
T ss_pred             E
Confidence            4

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=100.00  E-value=4.4e-39  Score=304.16  Aligned_cols=239  Identities=47%  Similarity=0.808  Sum_probs=229.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++||||.++|+++.++.|++.+++.+.+++++..+..+.+..-+|+.|.++.. +....|+.++.|+++++++++|+|+|
T Consensus        33 ~~kvlVANRgEIaIRvFRa~tEL~~~tvAiYseqD~~sMHRqKADEaY~iGk~l~PV~AYL~ideii~iak~~~vdavHP  112 (1176)
T KOG0369|consen   33 KNKVLVANRGEIAIRVFRAATELSMRTVAIYSEQDRLSMHRQKADEAYLIGKGLPPVGAYLAIDEIISIAKKHNVDAVHP  112 (1176)
T ss_pred             hceeEEecCCcchhHHHHHHhhhcceEEEEEeccchhhhhhhccccceecccCCCchhhhhhHHHHHHHHHHcCCCeecC
Confidence            47999999999999999999999999999999999999999999999988643 44566899999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      +|||++|+..+++.+.+.|+.++||+++.+..+.||...+.++-++|+|+.|+...-+++.+++.+++++.|+|+|+|..
T Consensus       113 GYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~PvI~KAA  192 (1176)
T KOG0369|consen  113 GYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGLPVIIKAA  192 (1176)
T ss_pred             CccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCCcEEEeec
Confidence            99999999999999999999999999999999999999999999999999999878889999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+|++++++.++++++++++.+++.++|+++.+.||+||+-++++.|+.++|..|+++++.||+||+||||||++|
T Consensus       193 yGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHIEvQllgD~~GNvvHLyERDCSvQRRHQKVVE  272 (1176)
T KOG0369|consen  193 YGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHIEVQLLGDKHGNVVHLYERDCSVQRRHQKVVE  272 (1176)
T ss_pred             ccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcceeEEEEecccCCCEEEEeecccchhhhhcceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999865

>PRK12999 pyruvate carboxylase; Reviewed

Probab=100.00  E-value=1.5e-37  Score=323.91  Aligned_cols=241  Identities=52%  Similarity=0.883  Sum_probs=223.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |++||||+|+|+++.+++++++++|+++++++++.+..+.+...+|+.+.+++. ...++|.+++.++++++++++|+|+
T Consensus         4 ~~kkvLianrGeiavri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~   83 (1146)
T PRK12999          4 KIKKVLVANRGEIAIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIH   83 (1146)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEE
Confidence            588999999999999999999999999999998888888889999999988643 2246788999999999999999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      |++|+++|+..+++.+++.|++++||+++++..+.||..++++++++|||+|+++...+.+.+++.++++++|||+|+||
T Consensus        84 PgyGflsE~~~~a~~~e~~Gi~fiGps~eai~~~~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGyPvVVKP  163 (1146)
T PRK12999         84 PGYGFLSENPEFARACAEAGITFIGPTAEVLRLLGDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGYPIMLKA  163 (1146)
T ss_pred             eCCCccccCHHHHHHHHHcCCcccCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCCCEEEEE
Confidence            99999999998999999999999999999999999999999999999999998762258899999999999999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH  308 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i  308 (313)
                      ..|+||+|++++++.+||.++++.+..++...++++.+++|+||+|++|+++++++|++|+++++++|+|++||++|+.+
T Consensus       164 ~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~~ieVqvl~D~~G~vv~l~erdcsvqrr~qk~i  243 (1146)
T PRK12999        164 SAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPRHIEVQILGDKHGNVVHLYERDCSVQRRHQKVV  243 (1146)
T ss_pred             CCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCeEEEEEEEEECCCCEEEEEccccceeecCccEE
Confidence            99999999999999999999999988777667777899999999998899999999999999999999999999999988


Q ss_pred             Ee
Q 021372          309 TE  310 (313)
Q Consensus       309 e~  310 (313)
                      |.
T Consensus       244 e~  245 (1146)
T PRK12999        244 EI  245 (1146)
T ss_pred             EE
Confidence            64

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=100.00  E-value=3.3e-37  Score=320.01  Aligned_cols=238  Identities=51%  Similarity=0.832  Sum_probs=221.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC---CCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA---PSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~---~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ||||.|+|+++.+++++++++|+++++++++.+..+.+...+|+.+.+++.   ....+|.+++.++++|+++++|+|+|
T Consensus         1 ~~lianrgeia~ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~P   80 (1143)
T TIGR01235         1 KILVANRGEIAIRVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHP   80 (1143)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEE
Confidence            699999999999999999999999999999999888999999999988543   22467899999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++|+++|+..+++.+++.|++++||++++++.+.||..++++++++|||+|+++...+.+.+++.++++++|||+||||.
T Consensus        81 GyGflsE~~~~a~~le~~Gi~fiGps~e~i~~~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGyPvIVKP~  160 (1143)
T TIGR01235        81 GYGFLSENSEFADACNKAGIIFIGPKAEVMDQLGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGYPVIIKAS  160 (1143)
T ss_pred             CCCccccCHHHHHHHHHcCCcccCCCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999997534578999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+|++++++.+|+.++++.+..++...++++.+++|+||+|++|++|++++|.+|+++++++|+|++||++|+.+|
T Consensus       161 ~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~reIeVqVlgD~~G~vv~l~eRdcsvqrr~qk~ie  240 (1143)
T TIGR01235       161 WGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQRRHQKVVE  240 (1143)
T ss_pred             CCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCeEEEEEEEEeCCCCEEEEEeccccccccCceEEE
Confidence            99999999999999999999999988777778888999999999889999999999999999999999999999999876


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (1143)
T TIGR01235       241 V  241 (1143)
T ss_pred             E
Confidence            4

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR02712 urea_carbox urea carboxylase

Probab=100.00  E-value=2e-36  Score=317.11  Aligned_cols=239  Identities=50%  Similarity=0.862  Sum_probs=222.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++||||+|+|.++.+++++|+++|+++++++++++..+.+..++|+.+.+++.+..++|.+.+.|+++|+++++|+|+|+
T Consensus         1 ~~kvLI~g~Geia~~iiraak~lGi~~v~v~sd~d~~a~~v~~AD~~v~l~~~~~~~sy~d~e~Il~~a~~~~idaIiPG   80 (1201)
T TIGR02712         1 FDTVLIANRGEIAVRIIRTLRRMGIRSVAVYSDADAASQHVLDADEAVCLGGAPAAESYLDIDKILAAAKKTGAQAIHPG   80 (1201)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCccchhhCCEEEEcCCCCcccCCCCHHHHHHHHHHHCCCEEEeC
Confidence            47999999999999999999999999999999988888889999999988776677889999999999999999999999


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      +++++|+..+++.+++.|++++||++++++.+.||..+|++|+++|||+|+++ ..+.+.+++.++++++|||+||||..
T Consensus        81 ~gflsE~~~~a~~~e~~Gi~~iGps~ea~~~~~DK~~ar~ll~~~GVPt~p~~-~lv~s~dea~~~a~~igyPvVVKP~~  159 (1201)
T TIGR02712        81 YGFLSENAAFAEACEAAGIVFVGPTPEQIRKFGLKHTARELAEAAGVPLLPGT-GLLSSLDEALEAAKEIGYPVMLKSTA  159 (1201)
T ss_pred             CcccccCHHHHHHHHHcCCcEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCce-eecCCHHHHHHHHHhcCCeEEEEECC
Confidence            99999998899999999999999999999999999999999999999998854 47789999999999999999999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      |+||+||+++++.+|+.++++.+.+.....+++..+++||||+|++|+++++++|++|+++++++++|+++|++++.+++
T Consensus       160 ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~~eveV~v~~Dg~g~vv~lg~rd~s~qr~~~k~vee  239 (1201)
T TIGR02712       160 GGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE  239 (1201)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCEEEEEEEEECCCCeEEEeeEEEeeeEecCccEEEE
Confidence            99999999999999999999998776655566678999999997799999999999999999999999999999998876

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated

Probab=100.00  E-value=3.6e-35  Score=283.34  Aligned_cols=240  Identities=50%  Similarity=0.834  Sum_probs=212.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |.+||||+|+|.+++.++++++++|+++++++++.+..+....++|+.+.+++....++|.+.+.++++|+++++|+|+|
T Consensus         1 ~~~~ililg~g~~~~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p   80 (450)
T PRK06111          1 MFQKVLIANRGEIAVRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHP   80 (450)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEe
Confidence            57999999999999999999999999999998888777788888999997765555667888999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      +++..+|+..+++.++..|++++|++.+++..+.||..++++|+++|||+|++....+.+.+++.++++.++||+|+||.
T Consensus        81 ~~~~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~P~VvKP~  160 (450)
T PRK06111         81 GYGLLSENASFAERCKEEGIVFIGPSADIIAKMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGYPVMLKAS  160 (450)
T ss_pred             CCCccccCHHHHHHHHHCCCeEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCCCEEEEeC
Confidence            98888888778889999999999999999999999999999999999999997323568899998999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||+++++.+|+.++++.+.......+++.++++||||+|++|++++++.+.+|+++.++.+++++++.+++.++
T Consensus       161 ~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~  240 (450)
T PRK06111        161 AGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDPRHIEIQLLADTHGNTVYLWERECSVQRRHQKVIE  240 (450)
T ss_pred             CCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCCcEEEEEEEEcCCCCEEEEEeecccccccccceEE
Confidence            99999999999999999999998754433334557899999999978999999999889999999988888887766554

>PLN02735 carbamoyl-phosphate synthase

Probab=99.97  E-value=7.3e-29  Score=259.13  Aligned_cols=209  Identities=20%  Similarity=0.290  Sum_probs=180.4

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      ++||||+|+|+.           +++++++|+++|+++++++++++..+.+...+|+.+..        +.+++.++++|
T Consensus       574 ~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~--------pl~~e~vl~i~  645 (1102)
T PLN02735        574 KKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFE--------PLTVEDVLNVI  645 (1102)
T ss_pred             CceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEE--------eCCHHHHHHHH
Confidence            689999999984           46799999999999999999999988888999998865        36799999999


Q ss_pred             HhcCCCEEeeccCcCccc---HHHHHHHH---------HcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC
Q 021372          140 ISRGCTMLHPGYGFLAEN---AVFVEMCR---------EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL  207 (313)
Q Consensus       140 ~~~~id~vip~~g~~~e~---~~~~~~l~---------~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~  207 (313)
                      +++++|+|+|.+|.....   ..+.+.+.         ..|+.++|++++++..+.||..++++|+++|||+|++.  .+
T Consensus       646 ~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~GIp~p~~~--~v  723 (1102)
T PLN02735        646 DLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGG--IA  723 (1102)
T ss_pred             HHhCCCEEEECCCchHHHHHHHHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHcCCCCCCee--Ee
Confidence            999999999987632221   11222222         23799999999999999999999999999999999995  78


Q ss_pred             CCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       208 ~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      .+.+++.++++++|||+||||..|+||+|+.++++.+||.++++.+....    ++++++||+||++++|++|++++|++
T Consensus       724 ~s~eea~~~a~~iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~----~~~~vlVEefI~~g~Ei~V~vl~D~~  799 (1102)
T PLN02735        724 RSEADALAIAKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVD----PERPVLVDKYLSDATEIDVDALADSE  799 (1102)
T ss_pred             CCHHHHHHHHHhcCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhc----CCCCEEEEEecCCcEEEEEEEEECCC
Confidence            89999999999999999999999999999999999999999999886542    34689999999866999999999988


Q ss_pred             CCEEEE
Q 021372          288 GNVVHF  293 (313)
Q Consensus       288 G~vv~~  293 (313)
                      |+++.+
T Consensus       800 G~vv~~  805 (1102)
T PLN02735        800 GNVVIG  805 (1102)
T ss_pred             CCEEEe
Confidence            888753

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=99.96  E-value=1.8e-28  Score=256.66  Aligned_cols=209  Identities=24%  Similarity=0.328  Sum_probs=182.2

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      .+||||+|+|++           |..++++|+++|++|++++++++....+..++|+.+..+        .+.+.+.+++
T Consensus         6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p--------~~~~~v~~ii   77 (1050)
T TIGR01369         6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEP--------LTPEAVEKII   77 (1050)
T ss_pred             CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECC--------CCHHHHHHHH
Confidence            689999999984           568999999999999999988877777788899988542        3568899999


Q ss_pred             HhcCCCEEeeccCc-Ccc----cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372          140 ISRGCTMLHPGYGF-LAE----NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV  214 (313)
Q Consensus       140 ~~~~id~vip~~g~-~~e----~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~  214 (313)
                      +++++|+|+|+++. ...    .......+++.|++++|++++++..+.||..++++|+++|+|+|++.  .+.+.+++.
T Consensus        78 ~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~~  155 (1050)
T TIGR01369        78 EKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPESE--IAHSVEEAL  155 (1050)
T ss_pred             HHhCCCEEEECCCChhHHHHHhhHHHHhHHHHCCCEEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCee--ecCCHHHHH
Confidence            99999999998652 212    12345678899999999999999999999999999999999999995  889999999


Q ss_pred             HHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       215 ~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++++++|||+||||..|.||+|+.++++.+|+.+++......+    ...++||||||+|.+|+++++++|.+|+++.+
T Consensus       156 ~~~~~igyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s----~~~~vlVEe~I~G~~Eiev~v~rd~~g~~~~~  230 (1050)
T TIGR01369       156 AAAKEIGYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSAS----PINQVLVEKSLAGWKEIEYEVMRDSNDNCITV  230 (1050)
T ss_pred             HHHHHhCCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcC----CCCcEEEEEcccCceEEEEEEEEeCCCCEEEE
Confidence            9999999999999999999999999999999999888765432    23689999999998899999999999998877

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=99.96  E-value=4.5e-28  Score=229.00  Aligned_cols=205  Identities=19%  Similarity=0.300  Sum_probs=171.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      ||||+|+|..++.++++|+++|++|++++.+++.+  ...++|+.+..+       +.+.+.+.++++++++|+|++..+
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~--~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~v~~~~e   71 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSYVIN-------MLDGDALRAVIEREKPDYIVPEIE   71 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc--hhhhCceEEEcC-------CCCHHHHHHHHHHhCCCEEEeccC
Confidence            69999999999999999999999999997766544  456889887553       467899999999999999998764


Q ss_pred             cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372          153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG  231 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g  231 (313)
                      ...  ......+++.|++++ ++++++..+.||..+++++ +++|||+|+++  .+.+.+++.++++++|||+|+||..|
T Consensus        72 ~v~--~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~~~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~VvKP~~g  146 (380)
T TIGR01142        72 AIA--TDALFELEKEGYFVV-PNARATKLTMNREGIRRLAAEELGLPTSRYM--FADSLDELREAVEKIGYPCVVKPVMS  146 (380)
T ss_pred             ccC--HHHHHHHHhcCCeeC-CCHHHHHHhhCHHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCC
Confidence            322  233456788898754 8999999999999999985 89999999985  88899999888899999999999999


Q ss_pred             CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++|+||+++++.+|+..+++.+.....  ..++++|+||||+|..|+++.++++.+|++..+
T Consensus       147 ~~s~gv~~v~~~~el~~~~~~~~~~~~--~~~~~~ivEe~i~~~~E~sv~~~~~~~g~~~~~  206 (380)
T TIGR01142       147 SSGKGQSVVRGPEDIEKAWEYAQEGAR--GGAGRVIVEEFIDFDYEITLLTVRHVDGNTTFC  206 (380)
T ss_pred             cCCCCeEEECCHHHHHHHHHHHHhhcc--CCCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence            999999999999999999988754211  123589999999986899999998777775543

This enzyme is an alternative to PurN (TIGR00639)

>PLN02735 carbamoyl-phosphate synthase

Probab=99.96  E-value=5.7e-28  Score=252.43  Aligned_cols=210  Identities=23%  Similarity=0.333  Sum_probs=179.0

Q ss_pred             cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      .++||||+|+|++           |..++++|+++|++|+++++++........++|+.+ +.|       .+.+.+.++
T Consensus        22 ~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~y-i~p-------~~~e~v~~i   93 (1102)
T PLN02735         22 DLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTY-IAP-------MTPELVEQV   93 (1102)
T ss_pred             CCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEE-eCC-------CCHHHHHHH
Confidence            3789999999985           678999999999999999888866555567889876 432       456788999


Q ss_pred             HHhcCCCEEeeccC-cCcccHH----HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372          139 AISRGCTMLHPGYG-FLAENAV----FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA  213 (313)
Q Consensus       139 ~~~~~id~vip~~g-~~~e~~~----~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~  213 (313)
                      ++++++|+|+|+++ ....+..    ....++.+|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++
T Consensus        94 i~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~eea  171 (1102)
T PLN02735         94 IAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSG--IATTLDEC  171 (1102)
T ss_pred             HHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCCCCCee--EeCCHHHH
Confidence            99999999999764 2223311    13567889999999999999999999999999999999999995  78899999


Q ss_pred             HHHHHHhC-CcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          214 VKLADELG-FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       214 ~~~~~~lg-~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      .++++++| ||+||||..+.||+|+.+++|.+||.++++.....+    .++++||||||.|.+|+++++++|.+|+++.
T Consensus       172 ~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s----~~~~VLVEe~I~G~kE~ev~Vl~D~~g~~i~  247 (1102)
T PLN02735        172 FEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAAS----ITSQVLVEKSLLGWKEYELEVMRDLADNVVI  247 (1102)
T ss_pred             HHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEecCCCeEEEEEEEEcCCCCEEE
Confidence            89999998 999999999999999999999999999998765322    3578999999999889999999998788876


Q ss_pred             E
Q 021372          293 F  293 (313)
Q Consensus       293 ~  293 (313)
                      +
T Consensus       248 v  248 (1102)
T PLN02735        248 I  248 (1102)
T ss_pred             E
Confidence            6

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.96  E-value=1.3e-27  Score=250.93  Aligned_cols=211  Identities=23%  Similarity=0.315  Sum_probs=180.1

Q ss_pred             cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      .++||||+|+|++           |..++++|+++|++|+++++++.....+..++|+.+..+        .+.+.+.++
T Consensus         6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p--------~~~e~l~~i   77 (1066)
T PRK05294          6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEP--------ITPEFVEKI   77 (1066)
T ss_pred             CCCEEEEECCchhhhcccccccchHHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECC--------CCHHHHHHH
Confidence            4789999999985           467999999999999999888766666677889877442        457899999


Q ss_pred             HHhcCCCEEeeccCcC-cccH--H--HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372          139 AISRGCTMLHPGYGFL-AENA--V--FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA  213 (313)
Q Consensus       139 ~~~~~id~vip~~g~~-~e~~--~--~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~  213 (313)
                      ++++++|+|+|+.+.. ..+.  .  ....+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++
T Consensus        78 i~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~--~v~s~~e~  155 (1066)
T PRK05294         78 IEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSG--IAHSMEEA  155 (1066)
T ss_pred             HHHHCcCEEEECCCCchhhhhhHHHHhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCee--eeCCHHHH
Confidence            9999999999986422 1221  1  13467889999999999999999999999999999999999995  88999999


Q ss_pred             HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .++++++|||+||||..|.||+|+.++++.+|+.++++.....+    ...++|+||||+|.+|+++.+++|.+|+++.+
T Consensus       156 ~~~~~~ig~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s----~~~~vlvEe~I~G~~Eisv~v~rd~~g~~~~~  231 (1066)
T PRK05294        156 LEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLS----PVTEVLIEESLLGWKEYEYEVMRDKNDNCIIV  231 (1066)
T ss_pred             HHHHHHcCCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCeEEEEEcccCceEEEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999988654321    23689999999998899999999999999877


Q ss_pred             e
Q 021372          294 G  294 (313)
Q Consensus       294 ~  294 (313)
                      .
T Consensus       232 ~  232 (1066)
T PRK05294        232 C  232 (1066)
T ss_pred             e
Confidence            4

>PRK12767 carbamoyl phosphate synthase-like protein; Provisional

Probab=99.96  E-value=1e-27  Score=221.98  Aligned_cols=208  Identities=20%  Similarity=0.252  Sum_probs=171.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcC--CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G--~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+||||+|.|... .++++|+++|  ++|++++.++.  .+....+|+.+.++ ..+  +..+.+.++++++++++|+|+
T Consensus         1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~~~--~~~~~~~d~~~~~p-~~~--~~~~~~~l~~~~~~~~id~ii   74 (326)
T PRK12767          1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGADISEL--APALYFADKFYVVP-KVT--DPNYIDRLLDICKKEKIDLLI   74 (326)
T ss_pred             CceEEEecCCccH-HHHHHHHHhccCCEEEEECCCCc--chhhHhccCcEecC-CCC--ChhHHHHHHHHHHHhCCCEEE
Confidence            5789999987655 8999999994  99999866544  45567888887663 222  233578999999999999999


Q ss_pred             eccCcCcc-cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHH--HHHHhCCcEE
Q 021372          149 PGYGFLAE-NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK--LADELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e-~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~--~~~~lg~P~V  225 (313)
                      |+.+.... .....+.++..|+.+++++++++..+.||..++++|+++|||+|+++  .+.+.+++.+  +...++||+|
T Consensus        75 ~~~d~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~P~v  152 (326)
T PRK12767         75 PLIDPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKSY--LPESLEDFKAALAKGELQFPLF  152 (326)
T ss_pred             ECCcHHHHHHHHHHHHHHHcCcEEEeCCHHHHHHHhcHHHHHHHHHHcCCCCCCEE--cccCHHHHHhhhhcccCCCCEE
Confidence            97632111 13445667778999889999999999999999999999999999996  7888888877  5567899999


Q ss_pred             EeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeecc
Q 021372          226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD  297 (313)
Q Consensus       226 vKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~  297 (313)
                      +||..|.+|+|++++++.+|+.++++..          .++++||||+| .|+++.++.+.+|+++.+..+.
T Consensus       153 iKP~~g~~s~gv~~v~~~~el~~~~~~~----------~~~lvqeyi~G-~e~~v~~~~~~~G~~~~~~~~~  213 (326)
T PRK12767        153 VKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEG-QEYTVDVLCDLNGEVISIVPRK  213 (326)
T ss_pred             EEeCCCCCccCeEEeCCHHHHHHHHHhC----------CCeEEEeccCC-ceEEEEEEEcCCCCEEEEEEee
Confidence            9999999999999999999999888753          58999999999 9999999999788888775543

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=99.96  E-value=3.8e-27  Score=223.82  Aligned_cols=207  Identities=19%  Similarity=0.312  Sum_probs=171.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|||+|+|..++.++++++++|++|++++.+++.+  ...++|..+.++       +.+.+.+.++++++++|+|++.
T Consensus        12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~~--~~~~ad~~~~~~-------~~d~~~l~~~~~~~~id~vi~~   82 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP--AMQVAHRSHVID-------MLDGDALRAVIEREKPDYIVPE   82 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCc--hHHhhhheEECC-------CCCHHHHHHHHHHhCCCEEEEe
Confidence            5789999999999999999999999999998766543  345778766543       4567899999999999999987


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHH-HCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~-~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      .+...  ......+++.|++++ ++++++..+.||..+++++. ++|||+|+++  .+++.+++.+++++++||+|+||.
T Consensus        83 ~e~~~--~~~~~~l~~~g~~~~-~~~~a~~~~~dK~~~k~~l~~~~gip~p~~~--~~~s~~~l~~~~~~~g~P~VvKP~  157 (395)
T PRK09288         83 IEAIA--TDALVELEKEGFNVV-PTARATRLTMNREGIRRLAAEELGLPTSPYR--FADSLEELRAAVEEIGYPCVVKPV  157 (395)
T ss_pred             eCcCC--HHHHHHHHhcCCeeC-CCHHHHHHHhCHHHHHHHHHHhCCCCCCCce--EECCHHHHHHHHHhcCCCEEEEeC
Confidence            64221  233455677788765 89999999999999999994 8999999985  889999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .|++|+||++++|.+|+.++++.+.....  ....++|+||||+++.|+++.++.+.+|...++
T Consensus       158 ~g~~s~Gv~~v~~~~el~~~~~~~~~~~~--~~~~~~lvEefi~~~~E~sv~~~~~~~~~~~~~  219 (395)
T PRK09288        158 MSSSGKGQSVVRSPEDIEKAWEYAQEGGR--GGAGRVIVEEFIDFDYEITLLTVRAVDGGTHFC  219 (395)
T ss_pred             CCcCCCCeEEECCHHHHHHHHHHHHhhcc--ccCCCEEEEEecCCCEEEEEEEEEcCCCCEEEe
Confidence            99999999999999999999988754321  013689999999955999999999876566555

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.96  E-value=1.4e-27  Score=250.07  Aligned_cols=211  Identities=24%  Similarity=0.331  Sum_probs=179.4

Q ss_pred             cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      ..+||||+|+|++           |.+++++|+++|++|+++++++........++|..+ +.       +.+.+.+.++
T Consensus         6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y-~e-------p~~~e~l~~i   77 (1068)
T PRK12815          6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVY-FE-------PLTVEFVKRI   77 (1068)
T ss_pred             CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeE-EC-------CCCHHHHHHH
Confidence            4789999999985           678999999999999999888766555566777766 43       2467899999


Q ss_pred             HHhcCCCEEeeccCcC-cccHH--H--HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372          139 AISRGCTMLHPGYGFL-AENAV--F--VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA  213 (313)
Q Consensus       139 ~~~~~id~vip~~g~~-~e~~~--~--~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~  213 (313)
                      ++++++|+|+|+.+.. ..+..  +  ...+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++
T Consensus        78 i~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpvp~~~--~v~s~ee~  155 (1068)
T PRK12815         78 IAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPVPESE--IVTSVEEA  155 (1068)
T ss_pred             HHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCCCCce--eeCCHHHH
Confidence            9999999999976422 12211  1  2357889999999999999999999999999999999999995  88999999


Q ss_pred             HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .++++++|||+||||..|.||+|+.+++|.+||.++++.+...+    ...++||||||+|.+|+++++++|.+|+++.+
T Consensus       156 ~~~~~~igyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s----~~~~vLVEe~I~G~~E~sv~v~rD~~g~~~~~  231 (1068)
T PRK12815        156 LAFAEKIGFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQAS----PIHQCLLEESIAGWKEIEYEVMRDRNGNCITV  231 (1068)
T ss_pred             HHHHHHcCCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcC----CCCeEEEEEccCCCeEEEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999997765432    23589999999998899999999999998877


Q ss_pred             e
Q 021372          294 G  294 (313)
Q Consensus       294 ~  294 (313)
                      .
T Consensus       232 ~  232 (1068)
T PRK12815        232 C  232 (1068)
T ss_pred             E
Confidence            3

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=99.96  E-value=3.6e-27  Score=222.12  Aligned_cols=199  Identities=20%  Similarity=0.340  Sum_probs=166.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +++|+|+|+|.+++.++.+++++|++|++++.+++.  +...++|+.+..+       +.|.+.+.++++  .+|+|...
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~--pa~~~ad~~~~~~-------~~D~~~l~~~a~--~~dvit~e   70 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS--PAAQVADEVIVAD-------YDDVAALRELAE--QCDVITYE   70 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--chhHhCceEEecC-------CCCHHHHHHHHh--cCCEEEeC
Confidence            468999999999999999999999999999766654  4467788877542       677888988886  58887643


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      +  ..-.....+.+++.  ..++|+++++..+.||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||..
T Consensus        71 ~--e~i~~~~l~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~v~s~~~l~~~~~~~g~P~vlKp~~  144 (372)
T PRK06019         71 F--ENVPAEALDALAAR--VPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFA--VVDSAEDLEAALADLGLPAVLKTRR  144 (372)
T ss_pred             c--CCCCHHHHHHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCcEEEEeCC
Confidence            2  11224445556555  3356999999999999999999999999999995  8899999999999999999999998


Q ss_pred             C-CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          231 G-GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       231 g-~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      | .+|+|++++++.+|+..+++.+        ...++|+||||++++|+++.++++.+|+++++.
T Consensus       145 ~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~~~E~sv~~~~~~~G~~~~~p  201 (372)
T PRK06019        145 GGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFEREVSVIVARGRDGEVVFYP  201 (372)
T ss_pred             CCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCCCeEEEEEEEECCCCCEEEeC
Confidence            6 5899999999999999988875        246899999999769999999999889887764

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=99.96  E-value=2.8e-28  Score=245.37  Aligned_cols=241  Identities=33%  Similarity=0.557  Sum_probs=211.8

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHcCCc---------EEEEec--CCCcchhhhhhcCceEEccCCCCCCCcCCHHH
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIP---------CVAVYS--TIDKDALHVKLADESVCIGEAPSSQSYLLIPN  134 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~---------vi~v~~--~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~  134 (313)
                      ++.+..++|||.+.|..|..-+++.++.-|+         .++..+  +-...+.+.+.+|+++.++-..+.+.|.+++.
T Consensus        49 gG~rvI~kILIAnNGiAAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADqyvevPgGtNnNNyANVdl  128 (2196)
T KOG0368|consen   49 GGHRVIKRILIANNGIAAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQYVEVPGGTNNNNYANVDL  128 (2196)
T ss_pred             cCCceeEEEEEecccHHHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhheeeCCCCCCCCCcccHHH
Confidence            3445578999999999888888888775433         222221  22345677889999988876778888999999


Q ss_pred             HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc----------
Q 021372          135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD----------  204 (313)
Q Consensus       135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~----------  204 (313)
                      |++++.+..+|+|.+|||.-+|+..+-+.|.+.||-|+||+..++....||....-+++.+|+|+.+|.-          
T Consensus       129 IvdiAe~~~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~  208 (2196)
T KOG0368|consen  129 IVDIAERTDVDAVWAGWGHASENPELPERLSANGIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIED  208 (2196)
T ss_pred             HHHHHHhcccceEeecccccccCcchHHHHHhcCcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecc
Confidence            9999999999999999999999999999999999999999999999999999999999999999988731          


Q ss_pred             --------------ccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372          205 --------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK  270 (313)
Q Consensus       205 --------------~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe  270 (313)
                                    ..+.+.+|..+.++.+|||+++|...|+||+|++++++.+++...+++...+    .+..++.+.+
T Consensus       209 ~~~~v~Vpedly~Kacv~~~eegLeaae~IGfPvMIKASEGGGGKGIRkv~n~ddF~~lf~qv~~E----vPGSPIFlMK  284 (2196)
T KOG0368|consen  209 KTNLVSVPEDLYEKACVRNVEEGLEAAEKIGFPVMIKASEGGGGKGIRKVENEDDFKALFKQVQNE----VPGSPIFLMK  284 (2196)
T ss_pred             cCCeEecCHHHhhhhhcCCHHHHHHHHHhcCCceEEEeccCCCCcceeeccchHHHHHHHHHHHhh----CCCCceeeee
Confidence                          2345788888999999999999999999999999999999999999998766    3668999999


Q ss_pred             ccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       271 ~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      ...+.+++.|++++|+.|+++.+++|+||+|||+||+|||
T Consensus       285 ~a~~ARHlEVQlLaDqYGn~IsLfgRDCSiQRRhQKIIEE  324 (2196)
T KOG0368|consen  285 LADQARHLEVQLLADQYGNVISLFGRDCSIQRRHQKIIEE  324 (2196)
T ss_pred             cccCcceeeeehhhhhcCCEeEeecccchHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998

>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit

Probab=99.95  E-value=6.5e-27  Score=244.96  Aligned_cols=207  Identities=21%  Similarity=0.341  Sum_probs=178.7

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      .+||||+|+|++           +++++++|+++|++|++++.++...+.....+|..+. +       ..+.+.+++++
T Consensus       554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~-e-------p~~~e~vl~i~  625 (1050)
T TIGR01369       554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYF-E-------PLTFEDVMNII  625 (1050)
T ss_pred             CceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEE-e-------cCCHHHHHHHH
Confidence            579999999975           6788999999999999999888776666677887663 2       24589999999


Q ss_pred             HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372          140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE  219 (313)
Q Consensus       140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~  219 (313)
                      +++++|+|++.++.. ....++..+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++
T Consensus       626 ~~e~idgVI~~~gg~-~~~~la~~le~~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~--~v~s~ee~~~~~~~  702 (1050)
T TIGR01369       626 ELEKPEGVIVQFGGQ-TPLNLAKALEEAGVPILGTSPESIDRAEDREKFSELLDELGIPQPKWK--TATSVEEAVEFASE  702 (1050)
T ss_pred             hhcCCCEEEEccCcH-hHHHHHHHHHHCCCcEECCCHHHHHHHCCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHh
Confidence            999999999886422 123567788899999999999999999999999999999999999995  88999999999999


Q ss_pred             hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      +|||+||||..+.||+||.+++|.+|+.++++.+....    ...++++||||+|+.|++|+++.|+ |+++..
T Consensus       703 igyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s----~~~~vlVeefI~~G~E~~Vd~l~d~-g~v~i~  771 (1050)
T TIGR01369       703 IGYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVS----PEHPVLIDKYLEDAVEVDVDAVSDG-EEVLIP  771 (1050)
T ss_pred             cCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhC----CCCCEEEeecCCCCeEEEEEEEEeC-CEEEEE
Confidence            99999999999999999999999999999999876542    3468999999995499999999994 566554

In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=99.95  E-value=1.7e-26  Score=216.27  Aligned_cols=198  Identities=22%  Similarity=0.405  Sum_probs=164.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      +|+|+|+|.+++.++++++++|++|++++.+++  ++...++|+.+..       ++.+.+.+.++++.  +|+|...+.
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~--~p~~~~ad~~~~~-------~~~d~~~i~~~a~~--~dvit~e~e   69 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN--SPAVQVADHVVLA-------PFFDPAAIRELAES--CDVITFEFE   69 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC--CChhHhCceeEeC-------CCCCHHHHHHHHhh--CCEEEeCcC
Confidence            489999999999999999999999999976655  4456788987732       25677888888865  677753321


Q ss_pred             cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC
Q 021372          153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG  232 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~  232 (313)
                      .  -.....+.+++.|++++ |+++++..++||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||..|+
T Consensus        70 ~--i~~~~l~~l~~~g~~~~-p~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~g  144 (352)
T TIGR01161        70 H--VDVEALEKLEARGVKLF-PSPDALAIIQDRLTQKQFLQKLGLPVPPFL--VIKDEEELDAALQELGFPVVLKARTGG  144 (352)
T ss_pred             c--CCHHHHHHHHhCCCeEC-CCHHHHHHhcCHHHHHHHHHHcCCCCCCcc--EeCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence            1  12345567788887755 999999999999999999999999999995  888999999999999999999999986


Q ss_pred             -CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       233 -gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                       +|+|++++++.+|+.++++.+        .+.++|+||||+++.|+++.++++.+|++..+.
T Consensus       145 ~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~~~~E~sv~~~~~~~G~~~~~~  199 (352)
T TIGR01161       145 YDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVPFERELSVIVARSADGETAFYP  199 (352)
T ss_pred             CCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCCCCeEEEEEEEEcCCCCEEEEC
Confidence             899999999999999988865        235899999999669999999998888877653

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK07206 hypothetical protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=221.88  Aligned_cols=208  Identities=16%  Similarity=0.164  Sum_probs=163.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh---hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~---~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      |||++||++++..+..++++++++|+++++++++.+....   ....++....+.       +.+.+.++++++++++|+
T Consensus         1 ~~k~~liv~~~~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~-------~~~~~~l~~~~~~~~~d~   73 (416)
T PRK07206          1 MMKKVVIVDPFSSGKFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVII-------NGDIDDLVEFLRKLGPEA   73 (416)
T ss_pred             CCCeEEEEcCCchHHHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhc-------CCCHHHHHHHHHHcCCCE
Confidence            6899999999999999999999999999999876643321   111222222121       256889999999999999


Q ss_pred             EeeccCcCcccHHHHH-HHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC---
Q 021372          147 LHPGYGFLAENAVFVE-MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF---  222 (313)
Q Consensus       147 vip~~g~~~e~~~~~~-~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~---  222 (313)
                      |+|+.+.   ....++ +.+..|++ ++++++++..++||+.|+++|+++|||+|+++  .+.+.+++.+++++++|   
T Consensus        74 vi~~~e~---~~~~~a~l~~~l~l~-~~~~~~~~~~~~dK~~~r~~l~~~gi~~p~~~--~~~~~~e~~~~~~~~g~~~~  147 (416)
T PRK07206         74 IIAGAES---GVELADRLAEILTPQ-YSNDPALSSARRNKAEMINALAEAGLPAARQI--NTADWEEAEAWLRENGLIDR  147 (416)
T ss_pred             EEECCCc---cHHHHHHHHHhcCCC-cCCChhhHHHhhCHHHHHHHHHHcCCCcccEE--ecCCHHHHHHHHHhcCCCCC
Confidence            9987531   122333 33455665 36899999999999999999999999999985  78899999999999888   


Q ss_pred             cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      |+||||..|+||+||++++|.+|+.++++++...... ...+..+|+||||+| .||+++++.. +|+++.
T Consensus       148 P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~E~sv~~~~~-~G~~~~  216 (416)
T PRK07206        148 PVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG-TEYVVNFVSL-DGNHLV  216 (416)
T ss_pred             CEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc-EEEEEEEEEE-CCEEEE
Confidence            9999999999999999999999999999887642100 011358999999999 9999999975 566554

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=99.95  E-value=2.6e-26  Score=226.08  Aligned_cols=206  Identities=21%  Similarity=0.298  Sum_probs=172.3

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +++.++|+|+|+|.+++.++++++++|++|++++.+++  .+...++|+.+..       ++.+.+.+.+++++  +|+|
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~--apa~~~AD~~~v~-------~~~D~~~l~~~a~~--~dvI   87 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED--CPASSVAARHVVG-------SFDDRAAVREFAKR--CDVL   87 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC--CchhhhCceeeeC-------CCCCHHHHHHHHHH--CCEE
Confidence            35578999999999999999999999999999976655  4456778887743       25778899999977  7877


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      ......  -+....+.+++.|+++ +++++++..++||..+|++|+++|||+|+++  .+.+.+++.++++++|||+|+|
T Consensus        88 t~e~e~--v~~~~l~~le~~gi~v-~ps~~al~i~~DK~~~K~~l~~~GIptp~~~--~v~~~~el~~~~~~ig~P~VvK  162 (577)
T PLN02948         88 TVEIEH--VDVDTLEALEKQGVDV-QPKSSTIRIIQDKYAQKVHFSKHGIPLPEFM--EIDDLESAEKAGDLFGYPLMLK  162 (577)
T ss_pred             EEecCC--CCHHHHHHHHhcCCcc-CCCHHHHHHhcCHHHHHHHHHHCCcCCCCeE--EeCCHHHHHHHHHhcCCcEEEE
Confidence            643211  1234557888899875 5899999999999999999999999999985  7888999988899999999999


Q ss_pred             eccCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          228 ATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       228 P~~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      |..++ +|+|++++++.+|+.++++.+...      +.++|+|+||++.+|++|.++++.+|++..++.
T Consensus       163 P~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~------~~~vlvEefI~~~~EisV~v~r~~~G~i~~~p~  225 (577)
T PLN02948        163 SRRLAYDGRGNAVAKTEEDLSSAVAALGGF------ERGLYAEKWAPFVKELAVMVARSRDGSTRCYPV  225 (577)
T ss_pred             eCCCCCCCCCeEEECCHHHHHHHHHHhhCC------CCcEEEEecCCCCeEEEEEEEECCCCCEEEecC
Confidence            99877 799999999999999998876431      368999999999899999999998888877643

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=99.95  E-value=2.5e-26  Score=219.92  Aligned_cols=208  Identities=15%  Similarity=0.142  Sum_probs=158.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|.....++++|++.|++|+++..+.++.  ...+++.++.++       ..+.+.++++|+++++|+|++
T Consensus         1 ~~~kVLvlG~G~re~al~~~l~~~g~~v~~~~~~~Npg--~~~~a~~~~~~~-------~~d~e~l~~~~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVGSGGREDAIARAIKRSGAILFSVIGHENPS--IKKLSKKYLFYD-------EKDYDLIEDFALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEECCcHHHHHHHHHHHhCCCeEEEEECCCChh--hhhcccceeecC-------CCCHHHHHHHHHHhCCCEEEE
Confidence            67899999999988999999999998888774332322  133444433332       467899999999999999998


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      +.+... ...+.+.+++.|++++|++.+++..+.||..++++|+++|||+|++| ..+.+.+++..++.+++||+||||.
T Consensus        72 ~~d~~l-~~~~~~~l~~~Gi~v~gps~~~a~~e~dK~~~k~~l~~~gIptp~~~-~~~~~~~e~~~~~~~~~~PvVVKP~  149 (435)
T PRK06395         72 GPDPVL-ATPLVNNLLKRGIKVASPTMEAAMIETSKMFMRYLMERHNIPGNINF-NACFSEKDAARDYITSMKDVAVKPI  149 (435)
T ss_pred             CCChHH-HHHHHHHHHHCCCcEECCCHHHHHHhhCHHHHHHHHHHCCcCCCccc-ceeCChHHHHHHHHhhCCCEEEEeC
Confidence            764211 13456677888999999999999999999999999999999998664 3555667777777888999999999


Q ss_pred             cCCCCccEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          230 AGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       230 ~g~gg~GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .++||+||+++++. +++.+++..+....   .....+||||||+| .|++++++.|+. .+..+
T Consensus       150 ~~sggkGV~v~~~~~~~~~ea~~~~~~~~---~~~~~viIEEfl~G-~E~Svd~~~dg~-~~~~l  209 (435)
T PRK06395        150 GLTGGKGVKVTGEQLNSVDEAIRYAIEIL---DRDGVVLIEKKMTG-EEFSLQAFSDGK-HLSFM  209 (435)
T ss_pred             CCCCCCCeEEecCchhhHHHHHHHHHHHh---CCCCcEEEEeecCC-ceEEEEEEEcCC-eEEEe
Confidence            99999999999543 23444444333211   11367999999999 899999999854 44443

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=99.95  E-value=4e-26  Score=218.68  Aligned_cols=208  Identities=20%  Similarity=0.281  Sum_probs=166.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +||||+|+|..+..+++++++.|+.+.++....+ ........+..+.+       ++.+.+.++++++++++|+++++.
T Consensus         1 ~kiliiG~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~d~~~l~~~~~~~~id~vi~~~   72 (423)
T TIGR00877         1 MKVLVIGNGGREHALAWKLAQSPLVKYVYVAPGN-AGTARLAKNKNVAI-------SITDIEALVEFAKKKKIDLAVIGP   72 (423)
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCccEEEEECCC-HHHhhhcccccccC-------CCCCHHHHHHHHHHhCCCEEEECC
Confidence            4899999999999999999999977666543332 22211111222222       356799999999999999999865


Q ss_pred             CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeecc
Q 021372          152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATA  230 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~  230 (313)
                      +.. -...+++.++++|++++|++++++..+.||..++++|+++|||+|++.  .+.+.+++.+++++++|| +|+||..
T Consensus        73 e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~~~g~P~~VvKp~~  149 (423)
T TIGR00877        73 EAP-LVLGLVDALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYE--VFTDPEEALSYIQEKGAPAIVVKADG  149 (423)
T ss_pred             chH-HHHHHHHHHHHCCCeEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCeEEEEECC
Confidence            211 013467788899999999999999999999999999999999999984  889999999999999999 9999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      |+||+||+++++.+|+.++++.+...... .....+|+||||+| .|+++.++.|+. .+..+
T Consensus       150 ~~gg~Gv~~v~~~~el~~~~~~~~~~~~g-~~~~~~lvEe~i~G-~E~sv~~~~dg~-~~~~~  209 (423)
T TIGR00877       150 LAAGKGVIVAKTNEEAIKAVEEILEQKFG-DAGERVVIEEFLDG-EEVSLLAFVDGK-TVIPM  209 (423)
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHHHHhcC-CCCCeEEEEECccC-ceEEEEEEEcCC-eEEec
Confidence            99999999999999999999887654210 01357999999999 999999999853 44443

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.95  E-value=2.3e-26  Score=241.48  Aligned_cols=202  Identities=20%  Similarity=0.372  Sum_probs=175.2

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      ++||||+|+|+.           +++++++|+++|++|++++.++...+.....+|+.+. +       ..+.+.+++++
T Consensus       554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~-e-------~~~~e~v~~i~  625 (1066)
T PRK05294        554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYF-E-------PLTLEDVLEII  625 (1066)
T ss_pred             CceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheee-c-------CCCHHHHHHHH
Confidence            689999998873           4678999999999999998888777777778888663 2       24689999999


Q ss_pred             HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372          140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE  219 (313)
Q Consensus       140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~  219 (313)
                      +++++|+|++.++.... ..++..+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++
T Consensus       626 ~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~--~~~s~ee~~~~~~~  702 (1066)
T PRK05294        626 EKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNG--TATSVEEALEVAEE  702 (1066)
T ss_pred             HHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHh
Confidence            99999999987542222 3567788999999999999999999999999999999999999995  88999999999999


Q ss_pred             hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      +|||+|+||..+.||+|+.+++|.+|+..+++.+....    .+.++++||||+|..|++|++++|++
T Consensus       703 igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s----~~~~vlIEefI~G~~E~sV~~v~dg~  766 (1066)
T PRK05294        703 IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVS----PDHPVLIDKFLEGAIEVDVDAICDGE  766 (1066)
T ss_pred             cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhC----CCCcEEEEecCCCCEEEEEEEEecCC
Confidence            99999999999999999999999999999998876432    34689999999994499999999854

>PRK06849 hypothetical protein; Provisional

Probab=99.95  E-value=8e-27  Score=221.22  Aligned_cols=208  Identities=13%  Similarity=0.097  Sum_probs=165.9

Q ss_pred             ccEEEEEcCCH-hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~-~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +++|||+|++. .++.++++++++|++|+++++.+......++++++++.+ +.+..++...++.|+++++++++|+|+|
T Consensus         4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~-p~p~~d~~~~~~~L~~i~~~~~id~vIP   82 (389)
T PRK06849          4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTI-PSPRWDPDAYIQALLSIVQRENIDLLIP   82 (389)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEe-CCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            68899999765 799999999999999999998877777788899999877 3344343345889999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEee
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKA  228 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP  228 (313)
                      +.+.........+.+ +.++.+++++.+++..+.||..++++++++|||+|+++  .+++.+++.++..+. +||+|+||
T Consensus        83 ~~e~~~~~a~~~~~l-~~~~~v~~~~~~~~~~~~DK~~~~~~~~~~GipvP~t~--~v~~~~~l~~~~~~~~~~P~vlKP  159 (389)
T PRK06849         83 TCEEVFYLSHAKEEL-SAYCEVLHFDFELLLLLHNKWEFAEQARSLGLSVPKTY--LITDPEAIRNFMFKTPHTPYVLKP  159 (389)
T ss_pred             CChHHHhHHhhhhhh-cCCcEEEcCCHHHHHHhhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHhhcCCCCcEEEEe
Confidence            875221112222333 23577888999999999999999999999999999996  889999988877776 89999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ..|.+|.|+.++.+.+++.....         ....++++||||+| .|+++.++.. +|+++..
T Consensus       160 ~~~~~~~~v~~~~~~~~l~~~~~---------~~~~~~ivQe~I~G-~e~~~~~~~~-~G~v~~~  213 (389)
T PRK06849        160 IYSRFVRRVDLLPKEAALKELPI---------SKDNPWVMQEFIQG-KEYCSYSIVR-SGELRAH  213 (389)
T ss_pred             CcccCCCeEEEecCHHHhccccc---------CCCCCeEEEEEecC-CeEEEEEEEE-CCEEEEE
Confidence            99999999999988544332110         12357999999999 8998888876 5787665

>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed

Probab=99.95  E-value=2.4e-26  Score=240.82  Aligned_cols=199  Identities=20%  Similarity=0.351  Sum_probs=175.1

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      +++|||+|+|+.           +++++++|+++|++++++++++...+.+...+|..+..        ..+.+.+++++
T Consensus       555 ~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~e--------p~~~e~vl~I~  626 (1068)
T PRK12815        555 KKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFE--------PLTLEDVLNVA  626 (1068)
T ss_pred             CceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEc--------cCCHHHHHHHH
Confidence            689999999874           56779999999999999999988777777788887632        24689999999


Q ss_pred             HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372          140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE  219 (313)
Q Consensus       140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~  219 (313)
                      +++++|+|++.++.. ....++..+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++
T Consensus       627 ~~e~~dgVI~~~g~~-~~~~la~~le~~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~GIp~P~~~--~~~s~ee~~~~~~~  703 (1068)
T PRK12815        627 EAENIKGVIVQFGGQ-TAINLAKGLEEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGL--TATDEEEAFAFAKR  703 (1068)
T ss_pred             hhcCCCEEEEecCcH-HHHHHHHHHHHCCCeEECCcHHHHHHHcCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHh
Confidence            999999999976422 124567788899999999999999999999999999999999999995  88999999999999


Q ss_pred             hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      +|||+|+||..+.||+|+.++++.+|+.++++.+.      ....++|+||||+| .|++++++.|++
T Consensus       704 igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~------s~~~~vlIeefI~G-~E~~Vd~i~dg~  764 (1068)
T PRK12815        704 IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENA------SQLYPILIDQFIDG-KEYEVDAISDGE  764 (1068)
T ss_pred             cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhh------cCCCCEEEEEeecC-ceEEEEEEEcCC
Confidence            99999999999999999999999999999998762      13478999999999 899999999964

>PRK13789 phosphoribosylamine--glycine ligase; Provisional

Probab=99.95  E-value=8.8e-26  Score=215.62  Aligned_cols=207  Identities=18%  Similarity=0.204  Sum_probs=165.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++||||+|+|..-..++++|++.++...++....+.....  .+. ...     ..-+..|.+.|+++++++++|+|+++
T Consensus         4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~--~~~-~~~-----~~~~~~d~~~l~~~a~~~~iD~Vv~g   75 (426)
T PRK13789          4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD--DEL-LPA-----DSFSILDKSSVQSFLKSNPFDLIVVG   75 (426)
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc--ccc-ccc-----cCcCcCCHHHHHHHHHHcCCCEEEEC
Confidence            5799999999999999999999986655554343332111  110 000     01235789999999999999999976


Q ss_pred             cCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          151 YGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       151 ~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      .    |+   ..+++.++++|++++||+..++.++.||..+|++|+++|||+|++  ..+.+.+++.+++++++||+|||
T Consensus        76 ~----E~~l~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~--~~~~~~~ea~~~~~~~~~PvVVK  149 (426)
T PRK13789         76 P----EDPLVAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASY--KTFTEYSSSLSYLESEMLPIVIK  149 (426)
T ss_pred             C----chHHHHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCe--EeeCCHHHHHHHHHhcCCCEEEE
Confidence            5    44   346677889999999999999999999999999999999999998  48889999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      |..+++|+||+++++.+|+.++++.+.........+..+||||||+| .|+++.++.|+. .++.+
T Consensus       150 p~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G-~E~Sv~~~~dg~-~~~~l  213 (426)
T PRK13789        150 ADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG-QEASIFAISDGD-SYFLL  213 (426)
T ss_pred             eCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC-eEEEEEEEECCC-EEEEc
Confidence            99999999999999999999999988643211111247999999999 999999999853 44433

>PRK00885 phosphoribosylamine--glycine ligase; Provisional

Probab=99.95  E-value=9.7e-26  Score=215.84  Aligned_cols=206  Identities=22%  Similarity=0.277  Sum_probs=162.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+|+|.....+++++++. |+.++++.+..  ... ...++ .+.+       ++.+.+.++++++++++|+|+++
T Consensus         1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n--~g~-~~~~~-~~~~-------~~~d~~~l~~~~~~~~id~vi~~   69 (420)
T PRK00885          1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGN--AGT-ALLAE-NVVI-------DVTDIEALVAFAKEEGIDLTVVG   69 (420)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCC--HHH-Hhhcc-ccCC-------CCCCHHHHHHHHHHhCCCEEEEC
Confidence            4899999998888899999886 55565553222  221 11222 2222       24778999999999999999976


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      .+.. -...+.+.++++|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+||..
T Consensus        70 ~e~~-l~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~VvKP~~  146 (420)
T PRK00885         70 PEAP-LVAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIPTAAYE--TFTDAEEALAYLDEKGAPIVVKADG  146 (420)
T ss_pred             CchH-HHHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeCC
Confidence            5211 113556778889999999999999999999999999999999999985  8899999999999999999999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++||+||+++++.+|+.++++.+............+|+||||+| .|+++.++.|++ .+..+
T Consensus       147 ~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G-~E~sv~~~~~g~-~~~~~  207 (420)
T PRK00885        147 LAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG-EEASFFAFVDGE-NVLPL  207 (420)
T ss_pred             CCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC-cEEEEEEEECCC-ceEec
Confidence            99999999999999999999987642100011358999999999 999999999854 55444

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.94  E-value=2.5e-25  Score=203.97  Aligned_cols=212  Identities=24%  Similarity=0.333  Sum_probs=181.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++|...+ ...+|...++++++.|+.|+++++++.+......++|+.+..+        ...+.+..+++++.+|+++|+
T Consensus         6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP--------~~~E~v~~Ii~~E~~Dailp~   77 (400)
T COG0458           6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEP--------ITKEPVEKIIEKERPDAILPT   77 (400)
T ss_pred             eeeEeeeeechhHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeeeec--------CcHHHHHHHHHhcCcceeecc
Confidence            3455555 4446899999999999999999999999988889999999663        668899999999999999999


Q ss_pred             cCcC-cccH----HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEE
Q 021372          151 YGFL-AENA----VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM  225 (313)
Q Consensus       151 ~g~~-~e~~----~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~V  225 (313)
                      .|-. ..+.    .....+++.|++++|.+.++++.+.||++++++|+++|+|+| +  ....+.+++.+..+.+|||+|
T Consensus        78 ~ggqt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~--~~~~~~~e~~~~~~~ig~PvI  154 (400)
T COG0458          78 LGGQTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-S--RIAHSVEEADEIADEIGYPVI  154 (400)
T ss_pred             cCCcchhhHHHHHHHhcchhhcCCEEEecCHHHhhhhhhHHHHHHHHHHcCCCCC-c--cccccHHHHhhhHhhcCCCEE
Confidence            7522 2221    222346677999999999999999999999999999999999 4  388999999999999999999


Q ss_pred             EeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhc
Q 021372          226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV  302 (313)
Q Consensus       226 vKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r  302 (313)
                      |||.++.||.|..+++|.+||.+........+    +..++++||+|.|+.|+...+++|.+++++..    |++.+
T Consensus       155 VrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s----~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivv----c~men  223 (400)
T COG0458         155 VKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS----PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVV----CNMEN  223 (400)
T ss_pred             EecCcCCCCCceeEEeCHHHHHHHHHhccccC----ccccceeeeeecCceEEEEEEEEeCCCCEEEE----EeCCc
Confidence            99999999999999999999999888765443    34689999999999999999999999999888    55544

>PRK05784 phosphoribosylamine--glycine ligase; Provisional

Probab=99.93  E-value=2.6e-24  Score=207.83  Aligned_cols=204  Identities=22%  Similarity=0.225  Sum_probs=157.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhh--hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~--~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +||||+|+|.....++.++++.  |++|+++..+.++....  ..+.+..+.+       +..+.+.++++|+++++|+|
T Consensus         1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~-------~~~d~~~l~~~a~~~~id~V   73 (486)
T PRK05784          1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIG-------NINSPEEVKKVAKEVNPDLV   73 (486)
T ss_pred             CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEec-------CCCCHHHHHHHHHHhCCCEE
Confidence            4899999999888999999998  99999885533322111  1122333333       24678899999999999999


Q ss_pred             eeccCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE
Q 021372          148 HPGYGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV  224 (313)
Q Consensus       148 ip~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~  224 (313)
                      +++.    |.   ..+++.+++.|++++||+.+++.++.||..++++|+++|||+|+.+ ..+++.+++.++++.. +|+
T Consensus        74 i~g~----E~~l~~glad~l~~~Gi~v~Gps~~aa~le~dK~~~K~~l~~~gIpt~~~~-~~~~~~~ea~~~~~~~-~Pv  147 (486)
T PRK05784         74 VIGP----EEPLFAGVADVLREEGFPVFGASSKCARIEKSKVWARELMWKYSIPGRLRY-KVFYDVEEAAKFIEYG-GSV  147 (486)
T ss_pred             EECC----chHHHHHHHHHHHhCCCCEECCcHHHHHHhcCHHHHHHHHHHcCcCCCccc-eEeCCHHHHHHHHhhc-CCE
Confidence            9875    33   3567888999999999999999999999999999999999997533 4778899988888665 699


Q ss_pred             EEeeccCCCCccEEEeCCHHH-----HHHHH----HHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEE
Q 021372          225 MIKATAGGGGRGMRLAKEPDE-----FVKLL----QQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVV  291 (313)
Q Consensus       225 VvKP~~g~gg~GV~~v~~~~e-----l~~~~----~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv  291 (313)
                      ||||..+++|+||.++++.++     +.+++    +.+.... ..++  +..+||||||.| .|++|+++.|+. .++
T Consensus       148 VVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~-~~~g~~~~~VlIEEfL~G-~E~SV~al~dG~-~~~  222 (486)
T PRK05784        148 AIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGS-AYYKDVEPKILVEEKVDG-VEYTLQVLTDGE-TVI  222 (486)
T ss_pred             EEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhH-hhccCCCCeEEEEEccCC-eEEEEEEEECCC-eEE
Confidence            999999999999999999873     33444    3332210 1222  368999999999 999999999754 444

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed

Probab=99.93  E-value=2.7e-24  Score=197.33  Aligned_cols=180  Identities=24%  Similarity=0.335  Sum_probs=151.2

Q ss_pred             ccccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        69 ~~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      +|+++|.|+-+|.+         +..++++|+++|++|.+++.+.+                             +++.+
T Consensus         2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~-----------------------------~~~~~   52 (304)
T PRK01372          2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED-----------------------------IAAQL   52 (304)
T ss_pred             CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc-----------------------------hHHHh
Confidence            45667887776653         68999999999999999853321                             12223


Q ss_pred             HhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372          140 ISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD  218 (313)
Q Consensus       140 ~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~  218 (313)
                      +..++|+|++.. +...++..+...++..|++++|++..++..+.||..++++|+++|||+|+++  .+.+.+++..+++
T Consensus        53 ~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~--~~~~~~~~~~~~~  130 (304)
T PRK01372         53 KELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTPPWI--VLTREEDLLAAID  130 (304)
T ss_pred             ccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EEeCcchHHHHHh
Confidence            345799999874 4456777788899999999999999999999999999999999999999995  7888888888889


Q ss_pred             HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      +++||+|+||..|++|+||.++++.+++.++++.+...      ...+|+||||+| +|+++.++.+.
T Consensus       131 ~~~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~E~~v~vi~~~  191 (304)
T PRK01372        131 KLGLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKY------DDEVLVEKYIKG-RELTVAVLGGK  191 (304)
T ss_pred             hcCCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcccCC-EEEEEEEECCC
Confidence            99999999999999999999999999999988776432      368999999999 99999998774

>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon

Probab=99.93  E-value=3.6e-24  Score=195.81  Aligned_cols=214  Identities=21%  Similarity=0.264  Sum_probs=170.4

Q ss_pred             EEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcC
Q 021372           76 VAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFL  154 (313)
Q Consensus        76 Iig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~  154 (313)
                      ..| +.+.++.+++.+++. -.+.++.++.++.......+|+.+.. |. +.++  .++.++++|+++++|+++|+....
T Consensus         3 wfn~~~s~~~~~i~~lr~~-~~~~i~~sh~~~~~~~~~~aD~~~~e-P~-~~~~--yv~~~l~~C~~~~Idv~~P~~~~~   77 (329)
T PF15632_consen    3 WFNRGFSSQRDIIRSLRAN-RDFTIIASHRDPRAPILYAADEAYLE-PA-DGEE--YVDWCLDFCKEHGIDVFVPGRNRE   77 (329)
T ss_pred             EecCCCccHHHHHHHHHcC-CCeEEEEEeCCCCchHHhcCceeeec-CC-CHHH--HHHHHHHHHHHhCCeEEEcCccHH
Confidence            344 455688899999886 56666777778788889999999865 44 4344  489999999999999999986321


Q ss_pred             cccHHHHHHHHHcCCceeC-CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc---EEEeecc
Q 021372          155 AENAVFVEMCREHGINFIG-PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP---VMIKATA  230 (313)
Q Consensus       155 ~e~~~~~~~l~~~gi~~~g-~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P---~VvKP~~  230 (313)
                       ......+.+++.|+.+.. ++.+++..+.||..+++.+++.|||+|+++  .+++.+++..+.+++++|   +++||..
T Consensus        78 -~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~~ipvp~~~--~v~t~~el~~a~~~l~~~~~~~CvKP~~  154 (329)
T PF15632_consen   78 -LLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEANGIPVPPYW--RVRTADELKAAYEELRFPGQPLCVKPAV  154 (329)
T ss_pred             -HHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHhCCCCCCCEE--EeCCHHHHHHHHHhcCCCCceEEEeccc
Confidence             135667888999999987 789999999999999999999999999996  899999999999998777   9999999


Q ss_pred             CCCCccEEEeC-CHHHHHHHHH---------HHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccch
Q 021372          231 GGGGRGMRLAK-EPDEFVKLLQ---------QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS  299 (313)
Q Consensus       231 g~gg~GV~~v~-~~~el~~~~~---------~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s  299 (313)
                      |.||+|.++++ +.+++...++         .+......+....++||+||++| .||||+++++. |+++....|...
T Consensus       155 g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G-~EySVD~l~~~-G~viaaV~R~K~  231 (329)
T PF15632_consen  155 GIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPG-PEYSVDCLADE-GRVIAAVPRRKL  231 (329)
T ss_pred             CCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCC-CeEEEEEEecC-CEEEEEEEEEec
Confidence            99999999998 5555555443         11111111122468999999999 99999999995 899877666443

>PLN02257 phosphoribosylamine--glycine ligase

Probab=99.93  E-value=1.3e-23  Score=200.95  Aligned_cols=203  Identities=18%  Similarity=0.255  Sum_probs=161.4

Q ss_pred             EEEcCCHhHHHHHHHHHHcCC--cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           75 LVANRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        75 LIig~g~~a~~v~~al~~~G~--~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      ||+|+|.....++.+|++...  ++++.  ..+   ......++.+.++ .   .+..+.+.|+++|+++++|+|+++..
T Consensus         1 lviG~ggrehal~~~l~~s~~~~~~~~~--pgn---~g~~~~~~~~~vp-~---~~~~d~~~l~~~a~~~~id~vvvg~E   71 (434)
T PLN02257          1 LVIGGGGREHALCYALQRSPSCDAVFCA--PGN---AGIATSGDATCVP-D---LDISDSAAVISFCRKWGVGLVVVGPE   71 (434)
T ss_pred             CEEcccHHHHHHHHHHHhCCCCCEEEEC--CCC---HHHhhhccceeec-C---CCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            789999888899999988763  33333  222   2233344444341 1   23567899999999999999998752


Q ss_pred             cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC
Q 021372          153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG  232 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~  232 (313)
                      ... ...+++.++..|++++||+.+++.++.||..+|++|+++|||+|++.  .+.+.+++.+++++++||+||||..++
T Consensus        72 ~~l-v~~~~d~l~~~Gi~~~Gps~~aa~l~~dK~~~K~~l~~~GIptp~~~--~~~~~~e~~~~~~~~g~PvVVKp~~~~  148 (434)
T PLN02257         72 APL-VAGLADDLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYE--TFTDPAAAKKYIKEQGAPIVVKADGLA  148 (434)
T ss_pred             hHH-HHHHHHHHHHCCCCEECChHHHHHHHcCHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence            111 14677888899999999999999999999999999999999999984  788999999999999999999999999


Q ss_pred             CCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       233 gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      +|+||+++++.+|+.++++.+....  .++  ...+||||||+| .|+++.++.|+. .++.+
T Consensus       149 ~GkGV~iv~~~~el~~a~~~~~~~~--~fg~~~~~vlIEefi~G-~E~Sv~~~~dG~-~~~pl  207 (434)
T PLN02257        149 AGKGVVVAMTLEEAYEAVDSMLVKG--AFGSAGSEVVVEEFLDG-EEASFFALVDGE-NAIPL  207 (434)
T ss_pred             CCCCEEEECCHHHHHHHHHHHHhhh--hccCCCCeEEEEECCCC-CEEEEEEEECCC-cEEEE
Confidence            9999999999999999998875321  222  368999999999 899999998854 45544

>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed

Probab=99.92  E-value=1.5e-24  Score=201.42  Aligned_cols=211  Identities=19%  Similarity=0.248  Sum_probs=155.6

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |+++|+|+-+|.+         |..++++|.+.||+|+.++.+.+..-.........+.. +.....++.    +....+
T Consensus         2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~   76 (333)
T PRK01966          2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELAD-DDNDKEDLS----LLILPS   76 (333)
T ss_pred             CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhccc-ccccccccc----hhcccc
Confidence            4677888877763         88999999999999999976654100000000000000 000000110    011111


Q ss_pred             hc--CCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH----H
Q 021372          141 SR--GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE----A  213 (313)
Q Consensus       141 ~~--~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~----~  213 (313)
                      ..  ++|+++|. +|...|+..+..+++.+|+++.|++..++..+.||..++++|+++|||+|+++  .+.+.++    .
T Consensus        77 ~~~~~~D~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~a~~l~~DK~~~k~~l~~~GIp~p~~~--~~~~~~~~~~~~  154 (333)
T PRK01966         77 GGSEEVDVVFPVLHGPPGEDGTIQGLLELLGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYV--VLTRGDWEEASL  154 (333)
T ss_pred             ccCccCCEEEEccCCCCCCCcHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEeccccchhhH
Confidence            22  69999998 57888999999999999999999999999999999999999999999999985  4444333    3


Q ss_pred             HHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       214 ~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ....+.++||+||||..+++|.||.++++.+|+.++++.+...      ++.+|||+||+| +|+++.++.+ ++.+..+
T Consensus       155 ~~~~~~~~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEefI~G-~E~~v~vl~~-~~~~~~~  226 (333)
T PRK01966        155 AEIEAKLGLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEY------DRKVLVEQGIKG-REIECAVLGN-DPKASVP  226 (333)
T ss_pred             HHHHHhcCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCcCC-EEEEEEEECC-CCeEccc
Confidence            4556789999999999999999999999999999999987643      378999999999 9999999987 4444433


Q ss_pred             ee
Q 021372          294 GE  295 (313)
Q Consensus       294 ~~  295 (313)
                      ++
T Consensus       227 ~e  228 (333)
T PRK01966        227 GE  228 (333)
T ss_pred             EE
Confidence            33

>PRK14569 D-alanyl-alanine synthetase A; Provisional

Probab=99.92  E-value=8e-24  Score=193.49  Aligned_cols=175  Identities=21%  Similarity=0.278  Sum_probs=142.3

Q ss_pred             ccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        71 ~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      ++||.|+-+|.+         +..++++|++.||+++.++.+...                            ++....+
T Consensus         3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~----------------------------~~~~l~~   54 (296)
T PRK14569          3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKE----------------------------LVAKLLE   54 (296)
T ss_pred             CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchh----------------------------HHHHhhc
Confidence            456777766653         789999999999999888532110                            0111223


Q ss_pred             cCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh
Q 021372          142 RGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL  220 (313)
Q Consensus       142 ~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l  220 (313)
                      .++|.+++. +|...|+..+...++.+|+++.|++++++..+.||..++++|+++|||+|++.  .+.+.   ....+.+
T Consensus        55 ~~~d~vf~~lhG~~ge~~~i~~~le~~gip~~Gs~~~a~~l~~DK~~~k~~l~~~gIptp~~~--~~~~~---~~~~~~~  129 (296)
T PRK14569         55 LKPDKCFVALHGEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPMAK--FLTDK---LVAEDEI  129 (296)
T ss_pred             cCCCEEEEeCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHHCHHHHHHHHHHCCCCCCCeE--EEchh---hhhHhhc
Confidence            479999987 46777888999999999999999999999999999999999999999999984  44332   1234678


Q ss_pred             CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       221 g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      +||+||||..|++|.||.++++.+||.++++.+..       .+++||||||+| +|++|.++.++
T Consensus       130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~-------~~~~lvEefI~G-~E~tv~vl~~~  187 (296)
T PRK14569        130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASK-------YGEVMIEQWVTG-KEITVAIVNDE  187 (296)
T ss_pred             CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHh-------cCCEEEEccccc-EEEEEEEECCc
Confidence            99999999999999999999999999999987642       257999999999 99999999764

>PRK02186 argininosuccinate lyase; Provisional

Probab=99.92  E-value=1.5e-23  Score=216.94  Aligned_cols=198  Identities=17%  Similarity=0.218  Sum_probs=160.0

Q ss_pred             ccEEEEEcCCH--hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372           71 QEKILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~--~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v  147 (313)
                      .++|++++++.  .+..++++++++|++|+++++++.........++..+..+       +.+.+.+++.+++. .+++|
T Consensus         2 ~~~~~~ie~~~~~~g~~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d-------~~d~~~l~~~~~~~~~i~~V   74 (887)
T PRK02186          2 TGIFVFIESNTTGTGELLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISAD-------TSDPDRIHRFVSSLDGVAGI   74 (887)
T ss_pred             ccEEEEEcCCCCccHHHHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcC-------CCCHHHHHHHHHhcCCCCEE
Confidence            57899999765  4678999999999999999865543222222344544332       56788999998886 68999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      +++.+..  ....+.+.+..|++  |++++++..++||..++++|+++|||+|+++  .+.+.+++.+++++++||+|||
T Consensus        75 ~~~se~~--v~~aa~lae~lglp--g~~~ea~~~~~dK~~~r~~L~~~GIp~P~~~--~v~~~~e~~~~~~~~~~PvVVK  148 (887)
T PRK02186         75 MSSSEYF--IEVASEVARRLGLP--AANTEAIRTCRDKKRLARTLRDHGIDVPRTH--ALALRAVALDALDGLTYPVVVK  148 (887)
T ss_pred             EeCchhh--HHHHHHHHHHhCcC--CCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHhCCCCEEEE
Confidence            9764211  23445566677875  6899999999999999999999999999995  8889999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      |..|+||+||++++|.+|+.++++.+...     ...++|+||||+| .||+|+++.+..
T Consensus       149 P~~g~gS~GV~~v~~~~el~~a~~~~~~~-----~~~~~lvEEfI~G-~E~sVe~i~~~g  202 (887)
T PRK02186        149 PRMGSGSVGVRLCASVAEAAAHCAALRRA-----GTRAALVQAYVEG-DEYSVETLTVAR  202 (887)
T ss_pred             eCCCCCCCCeEEECCHHHHHHHHHHHHhc-----CCCcEEEeecccC-CcEEEEEEEECC
Confidence            99999999999999999999999887542     2478999999999 999999998843

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=99.92  E-value=1.6e-23  Score=184.35  Aligned_cols=203  Identities=20%  Similarity=0.311  Sum_probs=173.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ..|||++|+|++|..++-+++++|.+|+++|...+  ++....++..+.++       ..|.++|...++++++|.|+|-
T Consensus        12 a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~--APAmqVAhrs~Vi~-------MlD~~al~avv~rekPd~IVpE   82 (394)
T COG0027          12 ATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN--APAMQVAHRSYVID-------MLDGDALRAVVEREKPDYIVPE   82 (394)
T ss_pred             CeEEEEecCCccchHHHHHHHhcCCEEEEecCcCC--Chhhhhhhheeeee-------ccCHHHHHHHHHhhCCCeeeeh
Confidence            57899999999999999999999999999955444  55577888888664       6889999999999999999985


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ....  +......+++.|+.++ |+..+...+.|+...|+++ +++|+|+.+|+  .+++.+++.+.++++|||||+||.
T Consensus        83 iEAI--~td~L~elE~~G~~VV-P~ArAt~ltMnRegiRrlAAeeLglpTs~Y~--fa~s~~e~~~a~~~iGfPcvvKPv  157 (394)
T COG0027          83 IEAI--ATDALVELEEEGYTVV-PNARATKLTMNREGIRRLAAEELGLPTSKYR--FADSLEELRAAVEKIGFPCVVKPV  157 (394)
T ss_pred             hhhh--hHHHHHHHHhCCceEc-cchHHHHhhhcHHHHHHHHHHHhCCCCcccc--ccccHHHHHHHHHHcCCCeecccc
Confidence            4211  1234456789999987 9999999999999999987 57999999995  999999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN  289 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~  289 (313)
                      -+++|+|-.+++++++++++|+.+...+  ..+...+++|+||+.+.|+++-.++.-+|.
T Consensus       158 MSSSGkGqsvv~~~e~ve~AW~~A~~g~--R~~~~RVIVE~fv~fd~EiTlLtvr~~~~~  215 (394)
T COG0027         158 MSSSGKGQSVVRSPEDVEKAWEYAQQGG--RGGSGRVIVEEFVKFDFEITLLTVRAVDGT  215 (394)
T ss_pred             cccCCCCceeecCHHHHHHHHHHHHhcC--CCCCCcEEEEEEecceEEEEEEEEEEecCC
Confidence            9999999999999999999999987543  224578999999999889998888765444

>PRK14572 D-alanyl-alanine synthetase A; Provisional

Probab=99.92  E-value=1.1e-23  Score=196.74  Aligned_cols=205  Identities=19%  Similarity=0.223  Sum_probs=148.8

Q ss_pred             cEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcC----CHHHH--H
Q 021372           72 EKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYL----LIPNV--L  136 (313)
Q Consensus        72 ~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~----~~~~l--~  136 (313)
                      .||+|+-+|.+         |..++++|.+.||+|+.++.+.+.........+..+..+.......+.    ....+  .
T Consensus         2 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (347)
T PRK14572          2 AKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEP   81 (347)
T ss_pred             cEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeecccccccccccccccccccccccccccccccc
Confidence            46777776663         889999999999999988755431100000011111000000000000    00000  0


Q ss_pred             HHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC------C
Q 021372          137 SAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ------S  209 (313)
Q Consensus       137 ~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~------~  209 (313)
                      ......++|+++++ +|...|+..+..+|+.+|+++.|++..++..+.||..++++|+++|||+|+++  .+.      +
T Consensus        82 ~~~~~~~~d~~f~~~hg~~gEdg~iq~~le~~gipy~Gs~~~a~~i~~DK~~~k~~l~~~GI~~p~~~--~~~~~~~~~~  159 (347)
T PRK14572         82 ADISQLDADIAFLGLHGGAGEDGRIQGFLDTLGIPYTGSGVLASALAMDKTRANQIFLQSGQKVAPFF--ELEKLKYLNS  159 (347)
T ss_pred             ccccccCcCEEEEecCCCCCCCcHHHHHHHHcCcCcCCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EEEccccccC
Confidence            11123468999987 57888999999999999999999999999999999999999999999999985  332      3


Q ss_pred             HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372          210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD  285 (313)
Q Consensus       210 ~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d  285 (313)
                      .+++.+..++++||+||||..|++|.||.++++.+||..+++.+...      +..+||||||+| +|++|.++.+
T Consensus       160 ~~~~~~~~~~l~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~------~~~vlVEefI~G-~E~sv~vi~~  228 (347)
T PRK14572        160 PRKTLLKLESLGFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFES------DSKVMSQSFLSG-TEVSCGVLER  228 (347)
T ss_pred             hHHHHHHHHhcCCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEEcCccc-EEEEEEEEeC
Confidence            44444556678999999999999999999999999999999987543      368999999999 9999999975

>PRK14568 vanB D-alanine--D-lactate ligase; Provisional

Probab=99.92  E-value=5.9e-24  Score=198.22  Aligned_cols=205  Identities=20%  Similarity=0.193  Sum_probs=150.7

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcch-hhhhhc-----C--ceEEccCCCCCCCcCCH
Q 021372           70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLA-----D--ESVCIGEAPSSQSYLLI  132 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~a-----d--~~~~v~~~~~~~~~~~~  132 (313)
                      +++||.|+-+|.+         |..++++|.+.||+|+.++.+.+..- ......     +  ....+.+......+.. 
T Consensus         2 ~~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (343)
T PRK14568          2 NRIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLV-   80 (343)
T ss_pred             CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccc-
Confidence            3567888777763         88999999999999999876553100 000000     0  0000101000000000 


Q ss_pred             HHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH
Q 021372          133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE  211 (313)
Q Consensus       133 ~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~  211 (313)
                       .........++|+++|. +|...|+..+..+++..|+++.|++..++..+.||..++++|+++|||+|+++  .+.+.+
T Consensus        81 -~~~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~~gipy~G~~~~asai~~DK~~~k~~l~~~GIp~p~~~--~~~~~~  157 (343)
T PRK14568         81 -LEQGEYETIRLDVVFPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLAYIVAKNAGIATPAFW--TVTADE  157 (343)
T ss_pred             -cCccccccccCCEEEEcCCCCCCCchHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEECCc
Confidence             00000123569999998 68888999999999999999999999999999999999999999999999985  555444


Q ss_pred             HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          212 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       212 ~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      +..  .+.++||+||||..+++|.||.++++.+||.++++.+...      +..+||||||+| +|+++.++.++.
T Consensus       158 ~~~--~~~l~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~sv~vl~~~~  224 (343)
T PRK14568        158 RPD--AATLTYPVFVKPARSGSSFGVSKVNSADELDYAIESARQY------DSKVLIEEAVVG-SEVGCAVLGNGA  224 (343)
T ss_pred             hhh--hhhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCcEEEECCcCC-EEEEEEEEcCCC
Confidence            332  3578999999999999999999999999999999887543      368999999999 999999998743

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=99.92  E-value=3.4e-23  Score=187.98  Aligned_cols=199  Identities=23%  Similarity=0.377  Sum_probs=167.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +++|.|+|+|.+|++++.+++++|+++++++++++  .+....++..+..+       |.|.+.+.+++.+  +|+|-  
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~--~PA~~va~~~i~~~-------~dD~~al~ela~~--~DViT--   67 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDAD--APAAQVADRVIVAA-------YDDPEALRELAAK--CDVIT--   67 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC--CchhhcccceeecC-------CCCHHHHHHHHhh--CCEEE--
Confidence            46899999999999999999999999999966555  44578888888543       6678899999855  78776  


Q ss_pred             cCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          151 YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       151 ~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                        +..|+  ....+.+... .+++ |+++++....||...|++|+++|+|+|+++  .+++.+++..+++++|+|.|+|.
T Consensus        68 --~EfE~V~~~aL~~l~~~-~~v~-p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~--~v~~~~el~~~~~~~g~p~VlKt  141 (375)
T COG0026          68 --YEFENVPAEALEKLAAS-VKVF-PSPDALRIAQDRLVEKQFLDKAGLPVAPFQ--VVDSAEELDAAAADLGFPAVLKT  141 (375)
T ss_pred             --EeeccCCHHHHHHHHhh-cCcC-CCHHHHHHHhhHHHHHHHHHHcCCCCCCeE--EeCCHHHHHHHHHHcCCceEEEe
Confidence              44454  5556666665 6666 899999999999999999999999999995  99999999999999999999999


Q ss_pred             ccCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          229 TAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       229 ~~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      +.|+ .|+|.+++++.+++.........       ....++|+|++..+|+||-+.++.+|++.++..
T Consensus       142 r~gGYDGkGQ~~i~~~~~~~~~~~~~~~-------~~~~vlE~fV~F~~EiSvi~aR~~~G~~~~yP~  202 (375)
T COG0026         142 RRGGYDGKGQWRIRSDADLELRAAGLAE-------GGVPVLEEFVPFEREISVIVARSNDGEVAFYPV  202 (375)
T ss_pred             ccccccCCCeEEeeCcccchhhHhhhhc-------cCceeEEeecccceEEEEEEEEcCCCCEEEecc
Confidence            9876 99999999999888875554432       134499999999999999999999999998854

>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=99.91  E-value=9.9e-24  Score=182.86  Aligned_cols=128  Identities=46%  Similarity=0.772  Sum_probs=116.9

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      ||..++++++++|+|+|+++...+++.+++.++++++|||+++||..|+||+|++++++.++|.++++....++..+|++
T Consensus         1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~   80 (211)
T PF02786_consen    1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGD   80 (211)
T ss_dssp             SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccccccccchhhhhhhhhhccccCcccccc
Confidence            89999999999999999997434599999999999999999999999999999999999999999999999998888999


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEee
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTEI  311 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~~  311 (313)
                      .++++|+|++|.+|+.|++++|++|+++++++|+|+.||++|+.+++.
T Consensus        81 ~~v~iek~i~~~reiEvqvi~D~~gn~~~~~~~e~~~~~hs~dsi~~~  128 (211)
T PF02786_consen   81 GPVLIEKFIEGAREIEVQVIRDGKGNVVHLGERECSEQRHSQDSIEEA  128 (211)
T ss_dssp             S-EEEEE--SSEEEEEEEEEEETTSEEEEEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeeehhhhhhhhhhhhhccccceeeeeeeccccccccccceeEe
Confidence            999999999999999999999999999999999999999999998874

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....

>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase

Probab=99.91  E-value=3e-23  Score=191.24  Aligned_cols=178  Identities=22%  Similarity=0.335  Sum_probs=139.1

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH-HHhcCCCEEeecc-CcCcccHHH
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA-AISRGCTMLHPGY-GFLAENAVF  160 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~-~~~~~id~vip~~-g~~~e~~~~  160 (313)
                      +..++++|+++|+++++++.+++...         . ..        ...+.+... ....++|+|++.. +...++..+
T Consensus        20 ~~~i~~al~~~g~~v~~i~~~~~~~~---------~-~~--------~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~   81 (315)
T TIGR01205        20 AAAVLKALRDLGYDVYPVDIDKMGSW---------T-YK--------DLPQLILELGALLEGIDVVFPVLHGRYGEDGTI   81 (315)
T ss_pred             HHHHHHHHhhcCCEEEEEeecCCccc---------c-cc--------chHHHHhhccccCCCCCEEEEecCCCCCCCcHH
Confidence            78999999999999999976543211         0 00        001112111 1225699999974 455677788


Q ss_pred             HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC-CHHHH-----HHHHHHhCCcEEEeeccCCCC
Q 021372          161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ-STEEA-----VKLADELGFPVMIKATAGGGG  234 (313)
Q Consensus       161 ~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~-~~~~~-----~~~~~~lg~P~VvKP~~g~gg  234 (313)
                      ...++.+|++++|+++.++..+.||..++++|+++|||+|+++  .+. +.++.     ..+.+.++||+|+||..|++|
T Consensus        82 ~~~le~~gip~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~s  159 (315)
T TIGR01205        82 QGLLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYI--VLTQNRASADELECEQVAEPLGFPVIVKPAREGSS  159 (315)
T ss_pred             HHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE--EEecccccchhhhHHHHHHhcCCCEEEEeCCCCCc
Confidence            8999999999999999999999999999999999999999985  444 33322     234467899999999999999


Q ss_pred             ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       235 ~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      .||.+++|.+|+.++++.+...      +..+|+||||+| +|+++.++.++.
T Consensus       160 ~Gv~~v~~~~el~~~~~~~~~~------~~~~lvEe~i~G-~e~~v~vi~~~~  205 (315)
T TIGR01205       160 VGVSKVKSEEELQAALDEAFEY------DEEVLVEQFIKG-RELEVSILGNEE  205 (315)
T ss_pred             cCEEEECCHHHHHHHHHHHHhc------CCcEEEEcCCCC-EEEEEEEECCCC
Confidence            9999999999999998876542      368999999999 999999998643

but a number of antibiotic resistance proteins score above the trusted cutoff of this model.

>PRK14570 D-alanyl-alanine synthetase A; Provisional

Probab=99.90  E-value=9.2e-23  Score=191.01  Aligned_cols=213  Identities=17%  Similarity=0.174  Sum_probs=153.6

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHH-HHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCC------H
Q 021372           70 RQEKILVANRGEI---------AVRVIRTA-HEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLL------I  132 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al-~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~------~  132 (313)
                      |+++|.|+-+|.+         |..++++| .+.+|+|+.++-+.+ ....   ..+.....+..........      .
T Consensus         1 ~~~~v~vl~GG~S~EhevSl~Sa~~v~~~l~~~~~~~v~~i~i~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (364)
T PRK14570          1 MKKNLMLIFGGVSFEHEISLRSAYGIYSALLKLDKYNIYSVFIDKCTGIWY---LLDSVPDPPKLIKRDVLPIVSLIPGC   77 (364)
T ss_pred             CCcEEEEEECCCCcchhhhHHhHHHHHHHhccccCceEEEEEEecCCCeEE---ecCccccccccccccccccccccccc
Confidence            4668888887774         88999999 678999998876543 1000   0000000000000000000      0


Q ss_pred             HHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC----
Q 021372          133 PNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL----  207 (313)
Q Consensus       133 ~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~----  207 (313)
                      ..+.. ....++|+|+|. +|...|+..+..+|+.+|+|+.|++..++..+.||..++++|+++|||+|+++  .+    
T Consensus        78 ~~~~~-~~~~~~D~vf~~lhG~~GEdg~iqglle~~giPy~Gs~~~asal~~DK~~tK~~l~~~GIpt~p~~--~~~~~~  154 (364)
T PRK14570         78 GIFVN-NKNLEIDVVFPIVHGRTGEDGAIQGFLKVMDIPCVGAGILGSAISINKYFCKLLLKSFNIPLVPFI--GFRKYD  154 (364)
T ss_pred             ccccc-CcCcCCCEEEEcCCCCCCCcCHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHcCCCCCCEE--EEeccc
Confidence            00110 122469999997 57888999999999999999999999999999999999999999999999974  22    


Q ss_pred             --CCHHHHHHH-HHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEE
Q 021372          208 --QSTEEAVKL-ADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA  284 (313)
Q Consensus       208 --~~~~~~~~~-~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~  284 (313)
                        .+.+++.+. ...+|||+||||..+++|.||.++++.+|+..+++.+...      ++.+||||||+| +|++|.+++
T Consensus       155 ~~~~~~~~~~~~~~~lg~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~------~~~vlVEefI~G-rEi~v~Vlg  227 (364)
T PRK14570        155 YFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKY------DLTVVIEKFIEA-REIECSVIG  227 (364)
T ss_pred             cccchHHHHHHHHHhcCCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhC------CCCEEEECCcCC-EEEEEEEEC
Confidence              234454433 4578999999999999999999999999999999987643      367999999999 999999998


Q ss_pred             cCCCCEEEEee
Q 021372          285 DKYGNVVHFGE  295 (313)
Q Consensus       285 d~~G~vv~~~~  295 (313)
                      +....+...++
T Consensus       228 ~~~~~v~~~~E  238 (364)
T PRK14570        228 NEQIKIFTPGE  238 (364)
T ss_pred             CCCceEeeeEE
Confidence            75444444443

>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]

Probab=99.89  E-value=1.5e-21  Score=179.67  Aligned_cols=206  Identities=21%  Similarity=0.273  Sum_probs=164.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +||||+|+|..-..++.++.+.+....++....++-...   .+....+.     .+ .+.+.|++++++.++|+++++.
T Consensus         1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~---~~~~~~~~-----~~-~~~~~lv~fA~~~~idl~vVGP   71 (428)
T COG0151           1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL---EAYLVNIE-----ID-TDHEALVAFAKEKNVDLVVVGP   71 (428)
T ss_pred             CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch---hhhhccCc-----cc-cCHHHHHHHHHHcCCCEEEECC
Confidence            589999999887888899988775554444344433211   12222111     11 4588999999999999999886


Q ss_pred             CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372          152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG  231 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g  231 (313)
                      ... -..-+.+.|++.||+++||+.++..+-.+|..+|++|+++|||++.+  ..+++.+++.+++++.|.|+||||..-
T Consensus        72 E~p-L~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y--~~f~~~e~a~ayi~~~g~piVVKadGL  148 (428)
T COG0151          72 EAP-LVAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEY--EVFTDPEEAKAYIDEKGAPIVVKADGL  148 (428)
T ss_pred             cHH-HhhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCCcccc--cccCCHHHHHHHHHHcCCCEEEecccc
Confidence            211 01356788999999999999999999999999999999999999988  588899999999999999999999999


Q ss_pred             CCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .+|+||.++.+.+|..++++.+....  .|+  ...++||||++| .|+|+.++.|++ +++.+
T Consensus       149 aaGKGV~V~~~~eeA~~a~~~~l~~~--~fg~~g~~VVIEEfL~G-eE~S~~a~~DG~-~v~p~  208 (428)
T COG0151         149 AAGKGVIVAMTLEEAEAAVDEMLEGN--AFGSAGARVVIEEFLDG-EEFSLQAFVDGK-TVIPM  208 (428)
T ss_pred             cCCCCeEEcCCHHHHHHHHHHHHhhc--cccCCCCcEEEEecccc-eEEEEEEEEcCC-eEEEC
Confidence            99999999999999999999887642  232  246999999999 999999999975 55444

>PRK14571 D-alanyl-alanine synthetase A; Provisional

Probab=99.89  E-value=6.5e-22  Score=181.24  Aligned_cols=173  Identities=17%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             EEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           73 KILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        73 ~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      ||.|+-+|.+         +..++++|++.|+++.+++.+.+.             +            ..+   .+..+
T Consensus         2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~-------------~------------~~~---~~~~~   53 (299)
T PRK14571          2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDF-------------L------------KKV---DQLKS   53 (299)
T ss_pred             eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchH-------------H------------HHh---hhccC
Confidence            4666655553         789999999999999998643210             0            011   11245


Q ss_pred             CCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC
Q 021372          144 CTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF  222 (313)
Q Consensus       144 id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~  222 (313)
                      +|+|++.. |...++..+...++.+|++++|+++.++..+.||..++++|+ .|||+|+++  .+.+..    ....++|
T Consensus        54 ~D~v~~~~~g~~ge~~~~~~~le~~gip~~G~~~~a~~i~~DK~~~k~~l~-~~ip~p~~~--~~~~~~----~~~~l~~  126 (299)
T PRK14571         54 FDVVFNVLHGTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLLTYRFLK-GTVEIPDFV--EIKEFM----KTSPLGY  126 (299)
T ss_pred             CCEEEEeCCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHh-cCCCCCCEE--EEechh----hhhhcCC
Confidence            89999874 555678888999999999999999999999999999999998 589999985  444322    2356899


Q ss_pred             cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      |+|+||..|++|.||.+++|.+|+.++++.....      ...+||||||+| +|+++.+++++.
T Consensus       127 P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~------~~~vlVEeyI~G-~E~sv~vl~~~~  184 (299)
T PRK14571        127 PCVVKPRREGSSIGVFICESDEEFQHALKEDLPR------YGSVIVQEYIPG-REMTVSILETEK  184 (299)
T ss_pred             CEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhh------CCcEEEEccccc-eEEEEEEEcCCC
Confidence            9999999999999999999999999988776532      368999999999 999999999854

>PRK13790 phosphoribosylamine--glycine ligase; Provisional

Probab=99.89  E-value=5.6e-22  Score=187.20  Aligned_cols=151  Identities=16%  Similarity=0.253  Sum_probs=132.7

Q ss_pred             cCCHHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC
Q 021372          129 YLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ  208 (313)
Q Consensus       129 ~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~  208 (313)
                      +.+.+.++++|+++++|+|+++.+.. -...+.+.+++.|++++|++.+++.++.||..++++|+++|||+|+++  .+.
T Consensus        13 ~~d~~~l~~~~~~~~id~vi~g~E~~-l~~~~~d~l~~~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~--~~~   89 (379)
T PRK13790         13 ESDHQAILDFAKQQNVDWVVIGPEQP-LIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYK--EVE   89 (379)
T ss_pred             CCCHHHHHHHHHHhCCCEEEECCcHH-HHHHHHHHHHhCCCcEECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEE--EEC
Confidence            56789999999999999999876321 113567888999999999999999999999999999999999999985  788


Q ss_pred             CHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       209 ~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      +.+++.+++++++||+||||..+++|+||++++|.+|+.++++.+....    .++.+||||||+| .|+++.++.+++
T Consensus        90 ~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~----~~~~vlvEe~i~G-~E~sv~~~~~g~  163 (379)
T PRK13790         90 RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDE----EEGTVVFETFLEG-EEFSLMTFVNGD  163 (379)
T ss_pred             CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcC----CCCeEEEEEcccC-ceEEEEEEeeCC
Confidence            9999999999999999999999999999999999999999999875321    2358999999999 999999999854

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=99.87  E-value=5.6e-21  Score=196.42  Aligned_cols=207  Identities=16%  Similarity=0.182  Sum_probs=154.4

Q ss_pred             ccccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           69 CRQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        69 ~~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      |++++|.|+-+|.+         |..++++|.+.||+|+.++.+.+...  ..................+ . ..+.+  
T Consensus       449 ~~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~--~~~~~~~~~~~~~~~~~~~-~-~~~~~--  522 (809)
T PRK14573        449 PKKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLW--ETVSSLETAIEEDSGKSVL-S-SEIAQ--  522 (809)
T ss_pred             CCCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeE--Eeccccccccccccccccc-c-hhhhh--
Confidence            34667888877764         88999999999999999876543211  0000000000000000111 0 11111  


Q ss_pred             HhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCC------HH-
Q 021372          140 ISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS------TE-  211 (313)
Q Consensus       140 ~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~------~~-  211 (313)
                      ...++|+|+|. +|...|+..+..+|+.+|+++.|++..+...+.||..+|++++++|||+|++.  .+..      .+ 
T Consensus       523 ~~~~~d~vf~~lhG~~gedg~iq~~le~~gipy~Gs~~~asal~~DK~~~K~~l~~~GIpt~~~~--~~~~~~~~~~~~~  600 (809)
T PRK14573        523 ALAKVDVVLPILHGPFGEDGTMQGFLEIIGKPYTGPSLAFSAIAMDKVLTKRFASDVGVPVVPYQ--PLTLAGWKREPEL  600 (809)
T ss_pred             ccccCCEEEEcCCCCCCCChHHHHHHHHcCCCeeCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhcccChHH
Confidence            11469999998 57888999999999999999999999999999999999999999999999985  3331      22 


Q ss_pred             HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372          212 EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN  289 (313)
Q Consensus       212 ~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~  289 (313)
                      .+.+..++++||+||||..+++|.||.++++.+|+.++++.+...      +.++||||||.|++|++|.++++..+.
T Consensus       601 ~~~~~~~~lg~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~i~~grEi~v~vl~~~~~~  672 (809)
T PRK14573        601 CLAHIVEAFSFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLY------DTDVFVEESRLGSREIEVSCLGDGSSA  672 (809)
T ss_pred             HHHHHHHhcCCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeccCCCEEEEEEEEeCCCCc
Confidence            234566789999999999999999999999999999999987642      478999999887799999999987653

>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional

Probab=99.86  E-value=8.4e-20  Score=169.44  Aligned_cols=210  Identities=17%  Similarity=0.225  Sum_probs=149.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|..+|+. +++.+++.|++.|++++++..... .....+.++|+++.++..   .+..+.+...++.+ .  +.++.
T Consensus        18 ~~~i~~~~sh-saL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~---~di~~~~~~~~l~~-~--~~iiI   90 (358)
T PRK13278         18 NITIATIGSH-SSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDF---SDILNEAVQEKLRE-M--NAILI   90 (358)
T ss_pred             cceEEEEecc-cHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcch---hhhcCHHHHHHHhh-c--CcEEE
Confidence            3478888865 589999999999999999876543 234456677888866411   11122233333333 3  55333


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      .+|....... .+.+...+++++| +.+++....||..++++|+++|||+|+++    .+.+       +++||+|+||.
T Consensus        91 p~gs~v~y~~-~d~l~~~~~p~~g-n~~~l~~e~dK~~~k~~L~~aGIp~p~~~----~~~~-------~i~~PvIVKp~  157 (358)
T PRK13278         91 PHGSFVAYLG-LENVEKFKVPMFG-NREILRWEADRDKERKLLEEAGIRIPRKY----ESPE-------DIDRPVIVKLP  157 (358)
T ss_pred             eCCCcceeec-HHHHHHCCCCcCC-CHHHHHHhcCHHHHHHHHHHcCCCCCCEe----CCHH-------HcCCCEEEEeC
Confidence            3344444333 3333468888874 88999999999999999999999999863    3433       35799999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccchhhccccee
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQVIEIHT  307 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s~~r~~~~~  307 (313)
                      .|.||+|++++++.+|+.++++.+.+...-. ....+++||||.| .||+++++... +|++-.+     ++.||++..
T Consensus       158 ~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~-~~~~~iIEEfI~G-~e~sv~~f~s~~~~~~e~l-----~id~r~~~~  229 (358)
T PRK13278        158 GAKGGRGYFIAKSPEEFKEKIDKLIERGLIT-EVEEAIIQEYVVG-VPYYFHYFYSPIKNRLELL-----GIDRRYESN  229 (358)
T ss_pred             CCCCCCCeEEeCCHHHHHHHHHHHHhccccC-CCCeEEEEecCCC-cEEEEEEEEeccCCeEEEE-----eeceeeeec
Confidence            9999999999999999999998875422111 1478999999999 99999999874 5675544     455555543

>PRK10446 ribosomal protein S6 modification protein; Provisional

Probab=99.84  E-value=2e-19  Score=164.90  Aligned_cols=193  Identities=18%  Similarity=0.172  Sum_probs=140.5

Q ss_pred             EEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++|+++.   .++..++++|+++|+++..++.......... ..+..+ .         ..       ....++|++++
T Consensus         2 ~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~-~~~~~~-~---------~~-------~~~~~~d~v~~   63 (300)
T PRK10446          2 KIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINP-AASSIH-Y---------KG-------RKLPHFDAVIP   63 (300)
T ss_pred             eEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCC-CcccEE-E---------CC-------cccCCCCEEEE
Confidence            57777733   4588999999999999999964321111000 011111 1         00       01236899998


Q ss_pred             ccCcC-ccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEE
Q 021372          150 GYGFL-AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMI  226 (313)
Q Consensus       150 ~~g~~-~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~Vv  226 (313)
                      ..+.. ... ......++..|. +.++++.++..+.||..++++|+++|||+|++.  .+.+.+++.++++++ +||+|+
T Consensus        64 ~~~~~~~~~~~~~~~~le~~g~-~v~n~~~a~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~~P~Vv  140 (300)
T PRK10446         64 RIGTAITFYGTAALRQFEMLGS-YPLNESVAIARARDKLRSMQLLARQGIDLPVTG--IAHSPDDTSDLIDMVGGAPLVV  140 (300)
T ss_pred             cCCCchhhHHHHHHHHHHHCCC-ceecCHHHHHhhhcHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHHHhCCCCEEE
Confidence            64321 111 234667888895 456899999999999999999999999999985  667888888888877 799999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC---CCcEEEEEEEEcCCCCEEEEeec
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ---NPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~---G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      ||..|++|+||+++++.+++..+++.+...      +..+|+||||+   | .|+++.++.+   +++...+|
T Consensus       141 KP~~g~~g~GV~~v~~~~~~~~~~~~~~~~------~~~~lvQe~I~~~~g-~d~rv~vig~---~~~~~~~r  203 (300)
T PRK10446        141 KLVEGTQGIGVVLAETRQAAESVIDAFRGL------NAHILVQEYIKEAQG-CDIRCLVVGD---EVVAAIER  203 (300)
T ss_pred             EECCCCCcccEEEEcCHHHHHHHHHHHHhc------CCCEEEEeeeccCCC-ceEEEEEECC---EEEEEEEE
Confidence            999999999999999999998888765432      36799999994   6 9999998853   56655554

>PRK06524 biotin carboxylase-like protein; Validated

Probab=99.83  E-value=1.2e-19  Score=172.86  Aligned_cols=147  Identities=20%  Similarity=0.280  Sum_probs=122.5

Q ss_pred             HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372          135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV  214 (313)
Q Consensus       135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~  214 (313)
                      +++.++.++....+.   +++++..+..+++..|+++.+|+.+++..+.||..++++++++|||+|+++.....+.+++.
T Consensus        96 ~~~~~~~~~~~~~~~---fl~~DG~iQ~lLE~lGIpy~gP~a~asai~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~  172 (493)
T PRK06524         96 TLEFIKRRGPGGKAC---FVMFDEETEALARQAGLEVMHPPAELRHRLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELS  172 (493)
T ss_pred             HHHHHHhhCCCCceE---EecCCHHHHHHHHHCCCeEECcCHHHHHHhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHH
Confidence            344555554422211   67799999999999999999999999999999999999999999999999622256777776


Q ss_pred             HHHHH--hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          215 KLADE--LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       215 ~~~~~--lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      +.++.  +|||+||||..|++|+|+.+|++.+|+..+++.+.       ....++||+||+| +|++|+++.+.+|.++.
T Consensus       173 ~~~~~~~IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~G-rEitVev~vd~dG~Vv~  244 (493)
T PRK06524        173 ALAHGAGLGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIRN-VEVCIEACVTRHGTVIG  244 (493)
T ss_pred             HHHHhccCCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccCc-EEEEEEEEEeCCCCEEe
Confidence            66665  99999999999999999999999999999887653       2367999999999 99999999998887754

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family

Probab=99.81  E-value=1.3e-18  Score=157.08  Aligned_cols=189  Identities=23%  Similarity=0.276  Sum_probs=137.2

Q ss_pred             EEEEc--CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           74 ILVAN--RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        74 ILIig--~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      |.|+.  .+.....++++++++|+++.+++.+...           +.+..     ...         ....+|++++..
T Consensus         2 ~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~-----------~~~~~-----~~~---------~~~~~d~v~~r~   56 (277)
T TIGR00768         2 LAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIP-----------LTFNE-----GPR---------ELAELDVVIVRI   56 (277)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcE-----------EeccC-----CCc---------cCCCCCEEEEec
Confidence            44554  3446788999999999999998532111           11100     000         013478877654


Q ss_pred             CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC
Q 021372          152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG  231 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g  231 (313)
                      ........+.+.++..|++++ ++++++..+.||..++++|+++|+|+|+++  .+.+.+++.++.++++||+|+||..|
T Consensus        57 ~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~t~--~~~~~~~~~~~~~~~~~p~vvKP~~g  133 (277)
T TIGR00768        57 VSMFRGLAVARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTG--LAGSPEEALKLIEEIGFPVVLKPVFG  133 (277)
T ss_pred             hhHhhHHHHHHHHHHCCCeee-CCHHHHHHHhhHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHhcCCCEEEEECcC
Confidence            111123466778888999988 578999999999999999999999999995  78889999999999999999999999


Q ss_pred             CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCC--cEEEEEEEEcCCCCEEEEeec
Q 021372          232 GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       232 ~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~--~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      ++|+||+++++.+++..+++.+....   .....+++||||+|.  .++++.++   +|+++....|
T Consensus       134 ~~g~gv~~i~~~~~l~~~~~~~~~~~---~~~~~~lvQe~I~~~~~~~~rv~v~---~~~~~~~~~r  194 (277)
T TIGR00768       134 SWGRLVSLARDKQAAETLLEHFEQLN---GPQNLFYVQEYIKKPGGRDIRVFVV---GDEVIAAIYR  194 (277)
T ss_pred             CCCCceEEEcCHHHHHHHHHHHHHhc---ccCCcEEEEeeecCCCCceEEEEEE---CCEEEEEEEE
Confidence            99999999999999998877654321   012479999999973  35555443   3466655444

This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=99.80  E-value=4.1e-19  Score=138.00  Aligned_cols=110  Identities=50%  Similarity=0.822  Sum_probs=102.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |.+||||+|+|+++.+++++++++|+++++++++++..+.+...+|+.+.+++.+..++|.+.+.++++++++++|+++|
T Consensus         1 ~ikkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p   80 (110)
T PF00289_consen    1 MIKKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP   80 (110)
T ss_dssp             SSSEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence            57899999999999999999999999999999999999999999999998887788889999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHH
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSI  179 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i  179 (313)
                      +|++++|+..+++.+++.|+.++||+++++
T Consensus        81 Gyg~lse~~~fa~~~~~~gi~fiGp~~~~i  110 (110)
T PF00289_consen   81 GYGFLSENAEFAEACEDAGIIFIGPSPEAI  110 (110)
T ss_dssp             TSSTTTTHHHHHHHHHHTT-EESSS-HHHH
T ss_pred             ccchhHHHHHHHHHHHHCCCEEECcChHhC
Confidence            999999999999999999999999999875

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional

Probab=99.79  E-value=9e-18  Score=153.97  Aligned_cols=212  Identities=17%  Similarity=0.159  Sum_probs=150.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh---hhcCceEEccCCCCCCCcCCH--HHHHHHHHhcCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~~ad~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id  145 (313)
                      ..+|..+|+. +++++++-|++.|++++++...... .++.   .++|+.+.++      +|.++  +.+.+..++  -+
T Consensus        17 ~~~i~t~~SH-sal~i~~gAk~egf~t~~v~~~~r~-~~Y~~f~~~~d~~i~~~------~f~~~~~~~~~~~l~~--~n   86 (366)
T PRK13277         17 KVKIGVLASH-SALDVFDGAKDEGFRTIAVCQKGRE-RTYREFKGIVDEVIVLD------KFKDILSEKVQDELRE--EN   86 (366)
T ss_pred             ccEEEEEecc-hHHHHhccHHhcCCcEEEEEcCCCc-chhhhhccccceEEEec------chhhhhhHHHHHHHHH--CC
Confidence            4578888876 5899999999999999998754432 2222   3578888764      23321  345554443  45


Q ss_pred             EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh--CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc
Q 021372          146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM--GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP  223 (313)
Q Consensus       146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~--~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P  223 (313)
                      +|+..++++.+..-.-....+..+|++| +...++.-  +||..++++|+++||++|+++    .++       +++.+|
T Consensus        87 ~i~iPh~sf~~y~g~~~ie~~~~vp~fG-nr~~lrwE~~~dKk~~yk~L~~aGI~~Pk~~----~~p-------~eId~P  154 (366)
T PRK13277         87 AIFVPNRSFAVYVGYDAIENEFKVPIFG-NRYLLRWEERTGEKNYYWLLEKAGIPYPKLF----KDP-------EEIDRP  154 (366)
T ss_pred             eEEecCCCeEEEecHHHHhhcCCCCccc-CHHHhhhhhccCHHHHHHHHHHcCCCCceee----cCc-------cccCcc
Confidence            6666667666654443333368899997 56666555  899999999999999999986    122       357899


Q ss_pred             EEEeeccCCC--CccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccch
Q 021372          224 VMIKATAGGG--GRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCS  299 (313)
Q Consensus       224 ~VvKP~~g~g--g~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s  299 (313)
                      +||||..+.|  |+|+++++|.+|+....+.+.....- .-+..++++||||.| .+|+++++.+. +|++..+     +
T Consensus       155 VIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G-~ey~~d~F~s~l~g~ve~l-----~  228 (366)
T PRK13277        155 VIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG-AHFNFNYFYSPIRDRLELL-----G  228 (366)
T ss_pred             EEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC-CEEEEEEEEeccCCcEEEE-----E
Confidence            9999999999  99999999999998887765431100 001245679999999 99999999995 7776655     4


Q ss_pred             hhcccceeEEe
Q 021372          300 IQVIEIHTHTE  310 (313)
Q Consensus       300 ~~r~~~~~ie~  310 (313)
                      +.+|.+..+|.
T Consensus       229 id~R~esn~dg  239 (366)
T PRK13277        229 IDRRIQSNLDG  239 (366)
T ss_pred             Eeecccccccc
Confidence            55554444443

>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX

Probab=99.78  E-value=2.4e-17  Score=149.37  Aligned_cols=174  Identities=24%  Similarity=0.331  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHH
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV  161 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~  161 (313)
                      -...++++++++|+++..++.+...           +.+.. +    ..         .-.++|++++............
T Consensus        11 ~~~~l~~al~~~g~~~~~~~~~~~~-----------~~~~~-~----~~---------~~~~~d~v~~r~~~~~~~~~~~   65 (280)
T TIGR02144        11 DEKMLIEELEKLGLPYRKIYVPALP-----------LPFGE-R----PK---------ELEDVDVAIIRCVSQSRALYSA   65 (280)
T ss_pred             HHHHHHHHHHHcCCceEEEEhhheE-----------EEcCC-C----cc---------ccCCCCEEEEcCcchhhHHHHH
Confidence            3577899999999999998543211           11110 0    00         0124788887521111223456


Q ss_pred             HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeC
Q 021372          162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK  241 (313)
Q Consensus       162 ~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~  241 (313)
                      ..++..|++++ ++++++..+.||..++++|+++|||+|+++  .+.+.+++.++.+.++||+|+||..|++|+||.+++
T Consensus        66 ~~le~~g~~~~-n~~~~~~~~~dK~~~~~~l~~~gip~P~t~--~~~~~~~~~~~~~~~~~P~vvKP~~g~~g~gv~~v~  142 (280)
T TIGR02144        66 RLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTY--LAFDREAALKLAEALGYPVVLKPVIGSWGRLVALIR  142 (280)
T ss_pred             HHHHHCCCcEE-CcHHHHHHHhhHHHHHHHHHHCCcCCCCeE--eeCCHHHHHHHHHHcCCCEEEEECcCCCcCCEEEEC
Confidence            77788999998 578999999999999999999999999995  677888888888899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEc
Q 021372          242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLAD  285 (313)
Q Consensus       242 ~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d  285 (313)
                      +.+++.++++......  ...+..+|+||||+| +.++++.++.+
T Consensus       143 ~~~~l~~~~~~~~~~~--~~~~~~~ivQefI~~~~~d~~v~vig~  185 (280)
T TIGR02144       143 DKDELESLLEHKEVLG--GSQHKLFYIQEYINKPGRDIRVFVIGD  185 (280)
T ss_pred             CHHHHHHHHHHHHhhc--CCcCCeEEEEcccCCCCCceEEEEECC
Confidence            9999988775422110  012357999999986 47888877643

The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.

>PRK14016 cyanophycin synthetase; Provisional

Probab=99.78  E-value=1.4e-17  Score=168.59  Aligned_cols=192  Identities=23%  Similarity=0.397  Sum_probs=147.5

Q ss_pred             ccEEEEEcCCHh--------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           71 QEKILVANRGEI--------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        71 ~~~ILIig~g~~--------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      ..+|++--..+.        ++.++.++-+-.    .+  +.+....+.+..++.+.++|        ....|+++++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~lgp--------st~~I~~~A~~~  172 (727)
T PRK14016        107 VYQVVFEYKEEEVGREALELAVDLVNAAINDT----PF--DLEAALARLRELDEDERLGP--------STAAIVDAAEAR  172 (727)
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHHHHHHHhhCC----Cc--CHHHHHHHHHHHHHhcccCC--------CHHHHHHHHHHc
Confidence            466777665542        334444443211    11  34445556666777777763        256999999999


Q ss_pred             CCCE--------EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372          143 GCTM--------LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV  214 (313)
Q Consensus       143 ~id~--------vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~  214 (313)
                      ++++        +.++||+..+      .+...+..  +++..++..+.||..++++|+++|||+|+++  .+.+.+++.
T Consensus       173 gi~~~~l~~~~~v~lgyG~~~~------~i~~~~~~--~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~--~v~s~~~a~  242 (727)
T PRK14016        173 GIPYIRLGDGSLVQLGYGKYQR------RIQAAETD--QTSAIAVDIACDKELTKRLLAAAGVPVPEGR--VVTSAEDAW  242 (727)
T ss_pred             CCCEEEeCCCCeEecCCcHHHH------HHHHhcCC--CCcHHHHHHhCCHHHHHHHHHHCCcCCCCee--EeCCHHHHH
Confidence            9988        7777775443      33333443  5789999999999999999999999999995  889999999


Q ss_pred             HHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          215 KLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       215 ~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++++++|||+|+||..|++|+||.+ +++.+|+.++++.+...      ...+|||+||+| +|+++.++   +|+++..
T Consensus       243 ~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~------~~~viVEe~I~G-~d~Rv~Vv---gg~vvaa  312 (727)
T PRK14016        243 EAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKE------SSDVIVERYIPG-KDHRLLVV---GGKLVAA  312 (727)
T ss_pred             HHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHh------CCeEEEEEecCC-ceEEEEEE---CCEEEEE
Confidence            9999999999999999999999998 99999999999987654      278999999999 99998776   3477777


Q ss_pred             eec
Q 021372          294 GER  296 (313)
Q Consensus       294 ~~r  296 (313)
                      ..|
T Consensus       313 ~~r  315 (727)
T PRK14016        313 ARR  315 (727)
T ss_pred             EEe
Confidence            655

>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103

Probab=99.77  E-value=6.6e-18  Score=165.98  Aligned_cols=161  Identities=24%  Similarity=0.389  Sum_probs=122.8

Q ss_pred             CceEEccCCCCCCCcCCH--HHHHHHHHhcCCCEEeeccCcCcccHHH-------HHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          115 DESVCIGEAPSSQSYLLI--PNVLSAAISRGCTMLHPGYGFLAENAVF-------VEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       115 d~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id~vip~~g~~~e~~~~-------~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                      |+.+.++|.+..+  .++  +.|++.+++.++++++...    |...+       ...+. ..+..+ +++.++..+.||
T Consensus       227 ~~~~~~g~~~~~~--l~~y~~~Ii~~a~~~Gi~~~~~~s----e~~~~~L~~g~~~~~~~-~s~~~~-~s~~ai~~~~DK  298 (547)
T TIGR03103       227 NERLFSGPAPEAD--LNPYARIIVDEARRRGIEVEVLDA----EGGLFRLSLGGRSIRCR-ESLSEL-TSAVAMSLCDDK  298 (547)
T ss_pred             CcccccCCCcccc--cCHHHHHHHHHHHHcCCcEEEECC----CCCEEEecCCceEEEEE-eccCCC-CCHHHHHHhcCH
Confidence            5556676554433  444  8999999999999998542    22111       00011 111112 688999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCC
Q 021372          186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGND  264 (313)
Q Consensus       186 ~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~  264 (313)
                      ..++++|+++|||+|+++  .+.+.+++.++++++| |+|+||..|++|+||.+ +++.+++.++++.+...      ..
T Consensus       299 ~~tk~lL~~aGIpVP~~~--~~~~~~~~~~~~~~~G-~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~------~~  369 (547)
T TIGR03103       299 RLTRRLVSEAGLQVPEQQ--LAGNGEAVEAFLAEHG-AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQF------CD  369 (547)
T ss_pred             HHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhC-CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhc------CC
Confidence            999999999999999995  7788899999999998 79999999999999997 99999999999987654      26


Q ss_pred             cEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       265 ~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      .+|+|+||+| .|+++.++.   |+++....|
T Consensus       370 ~vlvEe~i~G-~d~Rv~Vig---g~vvaa~~R  397 (547)
T TIGR03103       370 RVLLERYVPG-EDLRLVVID---FEVVAAAVR  397 (547)
T ss_pred             cEEEEEeccC-CeEEEEEEC---CEEEEEEEe
Confidence            8999999999 999887663   355555433

Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.

>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A

Probab=99.74  E-value=3.1e-17  Score=138.91  Aligned_cols=109  Identities=31%  Similarity=0.564  Sum_probs=88.1

Q ss_pred             HhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc
Q 021372          181 IMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA  260 (313)
Q Consensus       181 ~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~  260 (313)
                      .+.||..++++++++|||+|+++  .+.+.+++.+++..++||+||||..|++|+||+++++.+++.++++.+.....  
T Consensus         1 ~~~dK~~~~~~~~~~gv~~P~~~--~~~~~~~~~~~~~~~~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~~~--   76 (184)
T PF13535_consen    1 RCNDKYRMRELLKKAGVPVPKTR--IVDSEEELRAFAEDLGFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIREDSP--   76 (184)
T ss_dssp             -TCCHHHHHHHHHHHTS----EE--EECSHHHHHHHHHHSSSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHHHS--
T ss_pred             CCCCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHcCCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHhcc--
Confidence            37899999999999999999995  89999999999999999999999999999999999999999999999876641  


Q ss_pred             CCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          261 FGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       261 ~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      .....+++||||+| .|+++.++.+ +|+++.+.-
T Consensus        77 ~~~~~~ivqe~i~g-~e~~~~~~~~-~G~~~~~~~  109 (184)
T PF13535_consen   77 LGNGPVIVQEYIPG-DEYSVDGVVD-DGEVVFAGI  109 (184)
T ss_dssp             -HSSSEEEEE---S-EEEEEEEEEE-TTEEEEEEE
T ss_pred             cCCccEEEEEeeee-eeEEEEEEEE-cceEEEEEE
Confidence            11368999999999 9999999999 888866643

>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]

Probab=99.73  E-value=3.2e-16  Score=148.06  Aligned_cols=207  Identities=18%  Similarity=0.218  Sum_probs=158.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+.+|||+|+|..-..++..|++. -+.-+.+.+...-.+  +.-+.....+     +-+..|.+++..+|++++|..|+
T Consensus         1 ~~~~vLviGsGgREHal~wkL~qSp~v~~v~vaPGn~G~a--~~~~~~~~~~-----dI~~~d~~ala~f~~e~~I~lVv   73 (788)
T KOG0237|consen    1 ERVNVLVIGSGGREHALAWKLKQSPKVKKVYVAPGNGGTA--SGDASKVPNL-----DISVADFEALASFCKEHNINLVV   73 (788)
T ss_pred             CceEEEEEcCCchHhHHHHHhhcCCccceEEEccCCCCcc--cCccccCccc-----ccChhhHHHHHHHHHHcceeEEE
Confidence            467899999987666777777775 333333332222111  1111111111     11235788999999999999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEe
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIK  227 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvK  227 (313)
                      ++.. ..-..-+...+.+.||+++||+.++..+-.+|..+++++.++|||+..|  ..+++++++..+.+..+ .++|||
T Consensus        74 vGPE-~PL~~Gl~~~l~~~gi~~FGPs~~aAqlE~sK~fsK~fm~r~~IPTA~y--~~ft~~e~a~sfi~~~~~~~~ViK  150 (788)
T KOG0237|consen   74 VGPE-LPLVAGLADVLRSAGIPCFGPSKQAAQLEASKNFSKDFMHRHNIPTAKY--KTFTDPEEAKSFIQSATDKALVIK  150 (788)
T ss_pred             ECCc-hhhhhhhhhhhhccCcceeCchHHHHHhhhhHHHHHHHHHhcCCCccee--eeeCCHHHHHHHHHhCCCcceEEe
Confidence            8862 1111356788889999999999999999999999999999999999998  58999999999999988 569999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      ...-+.|+||.+..+.+|.-++++.+.....-......++|||+++| .|+++-.+.|+.
T Consensus       151 AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LEG-eEvS~laftDG~  209 (788)
T KOG0237|consen  151 ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLEG-EEVSFLAFTDGY  209 (788)
T ss_pred             ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcCc-ceEEEEEEecCc
Confidence            99999999999999999999999988754422222468999999999 999999999974

>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=2e-16  Score=145.23  Aligned_cols=200  Identities=22%  Similarity=0.318  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCccc-HH
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN-AV  159 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~-~~  159 (313)
                      ......++++++|+++..+++...........+... ..+..  ............+.......|++++..+..... ..
T Consensus        18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~i~~R~~~~~~~~~~   95 (318)
T COG0189          18 TTFALMEAAQKRGHELAILDDGDLSLRKGEIKALARLVEVGE--VIGLHYELIEEEDLSLLDELDVIIMRKDPPFDFATR   95 (318)
T ss_pred             hHHHHHHHHHhhCceEEEEcccccccccchhHHHHHhhhhhh--ccccccccccccccchhccCCEEEEecCCchhhHHH
Confidence            477888999999999998865433222111111100 00000  000000001111122334689999875433333 45


Q ss_pred             HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH-HhCCcEEEeeccCCCCccEE
Q 021372          160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD-ELGFPVMIKATAGGGGRGMR  238 (313)
Q Consensus       160 ~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~-~lg~P~VvKP~~g~gg~GV~  238 (313)
                      +++.++..|.+++ ++++++..+.||..+.++|...|+|+|+|.  +..+.+++..+.+ .+|||+|+||..|++|+||.
T Consensus        96 ~~~~~E~~G~~vi-N~p~~i~~~~nK~~~~~~l~~~~ipvP~T~--i~~~~~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~  172 (318)
T COG0189          96 FLRLAERKGVPVI-NDPQSIRRCRNKLYTTQLLAKAGIPVPPTL--ITRDPDEAAEFVAEHLGFPVVLKPLDGSGGRGVF  172 (318)
T ss_pred             HHHHHHHcCCeEE-CCHHHHHhhhhHHHHHHHHHhcCCCCCCEE--EEcCHHHHHHHHHHhcCCCEEEeeCCCCCccceE
Confidence            6778899999998 899999999999999999999999999995  7778666655554 56899999999999999999


Q ss_pred             EeCCHH-HHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEcCCCCEEEE
Q 021372          239 LAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       239 ~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++++.+ ++.+.++.+.+.     +...+|+||||+- .+++..-++.|  +.++..
T Consensus       173 ~v~~~d~~l~~~~e~~~~~-----~~~~~ivQeyi~~~~~~~rrivv~~--~~~~~~  222 (318)
T COG0189         173 LVEDADPELLSLLETLTQE-----GRKLIIVQEYIPKAKRDDRRVLVGG--GEVVAI  222 (318)
T ss_pred             EecCCChhHHHHHHHHhcc-----ccceEehhhhcCcccCCcEEEEEeC--CEEeEE
Confidence            999999 888888776543     1246999999997 33555555555  345443

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.68  E-value=4.2e-16  Score=153.44  Aligned_cols=206  Identities=19%  Similarity=0.298  Sum_probs=178.6

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      .+-++|+|+|..           +..-+|.|+++|++++.+..+|...+.+...||..| .+       ....+.++++.
T Consensus       918 ~~g~mVlGsGvYrIGSSVEFDwcaV~~~rtLr~~g~kTimvNyNPETVSTDyDecdrLY-Fe-------eis~E~vmDiY  989 (1435)
T KOG0370|consen  918 EHGVMVLGSGVYRIGSSVEFDWCAVGCARTLRKLGKKTIMVNYNPETVSTDYDECDRLY-FE-------EISYERVMDIY  989 (1435)
T ss_pred             CCceEEEcccceecccceeechhhhhHHHHHHHcCCceEEEecCcccccCchHHHhhHh-Hh-------hhhhhhhhhhh
Confidence            356899998763           788999999999999999999999999999999877 32       36678999999


Q ss_pred             HhcCCCEEeeccC-cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372          140 ISRGCTMLHPGYG-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD  218 (313)
Q Consensus       140 ~~~~id~vip~~g-~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~  218 (313)
                      ..+...+++...| .+..+  ++--|.+.|++++|.+++.|..+.|+..+.+.|.+.||..|+|  ...++.+++.+|++
T Consensus       990 e~E~~~G~iis~GGQ~pnN--iA~~L~r~~~kilGTsP~~ID~AEnR~kFS~~Ld~i~v~Qp~W--kelt~~~eA~~F~~ 1065 (1435)
T KOG0370|consen  990 ELENSEGIIISVGGQLPNN--IALKLHRNGVKILGTSPEMIDSAENRFKFSRMLDSIGVDQPAW--KELTSLEEAKKFAE 1065 (1435)
T ss_pred             hhccCCceEEEecCcCcch--hhhHhHhcCCeEecCChHhhhhhhhHHHHHHHHHHcCCCchhh--hhhccHHHHHHHHH
Confidence            9888888887653 44443  3334668899999999999999999999999999999999998  58999999999999


Q ss_pred             HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      +.||||++.|..=-+|..+-++++.++|+..++++...+    .+.++++-+||+|.+|+.++.+.. +|+++.-
T Consensus      1066 ~VgYP~lvRPSYVLSGaAMnv~~~~~dl~~~L~~A~~vs----~dhPVVisKfie~AkEidvDAVa~-~G~~~~h 1135 (1435)
T KOG0370|consen 1066 KVGYPVLVRPSYVLSGAAMNVVYSESDLKSYLEQASAVS----PDHPVVISKFIEGAKEIDVDAVAS-DGKVLVH 1135 (1435)
T ss_pred             hcCCceEecccceecchhhhhhhcHHHHHHHHHHHhhcC----CCCCEEhHHhhcccceechhhhcc-CCeEEEE
Confidence            999999999999889999999999999999999886654    568999999999999999999987 6677644

>COG3919 Predicted ATP-grasp enzyme [General function prediction only]

Probab=99.65  E-value=9.7e-16  Score=134.46  Aligned_cols=208  Identities=19%  Similarity=0.206  Sum_probs=150.8

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      -|+|+|+....+.++|++.+..+.|.++..+...+. .++++...... +.++++  ..+..|.+++.+++....+..-.
T Consensus         5 gviilGgahgtlalARSfg~~~vpv~~ls~d~plPt-~Sr~vr~t~~w-~gphd~--gaiafLrd~Aekhglkg~LLva~   80 (415)
T COG3919           5 GVIILGGAHGTLALARSFGEEFVPVLALSADGPLPT-YSRIVRVTTHW-NGPHDE--GAIAFLRDFAEKHGLKGYLLVAC   80 (415)
T ss_pred             ceEEEcccchhHHHHHhhccccceEEEEecCCCCcc-hhhhheeeecc-CCCCcc--cHHHHHHHHHhhcCcCceEEEec
Confidence            489999888889999999999999998876544443 78888776644 334433  34889999999998764433211


Q ss_pred             cCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          153 FLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       153 ~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      -..|.   .+..+.+.+ -+.++-|++..++...+|-.++..++++|+|+|.||  .+++..+.  ...++-||+|+||-
T Consensus        81 GDgev~lvSq~reeLSa-~f~v~lp~w~~l~wlceKPllY~ra~elgl~~P~Ty--~v~S~~d~--~~~el~FPvILKP~  155 (415)
T COG3919          81 GDGEVLLVSQYREELSA-FFEVPLPDWALLRWLCEKPLLYNRAEELGLPYPKTY--LVNSEIDT--LVDELTFPVILKPG  155 (415)
T ss_pred             CCceeeehHhhHHHHHH-HhcCCCCcHHHHHHHhhCcHHHHHHHHhCCCCcceE--Eecchhhh--hhhheeeeEEecCC
Confidence            11232   223333322 223334799999999999999999999999999997  77766654  55688899999998


Q ss_pred             cCC-----CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCc--EEEEEEEEcCCCCEEEE
Q 021372          230 AGG-----GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR--HIEFQVLADKYGNVVHF  293 (313)
Q Consensus       230 ~g~-----gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~--e~~v~v~~d~~G~vv~~  293 (313)
                      .|+     +-..++.+.|.+|+..++..+.++.    +.++++|||||+|+.  .++...+.|+..+|..+
T Consensus       156 mgg~~~~~araKa~~a~d~ee~k~a~~~a~eei----gpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaef  222 (415)
T COG3919         156 MGGSVHFEARAKAFTAADNEEMKLALHRAYEEI----GPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEF  222 (415)
T ss_pred             CCCcceeehhhheeeccCHHHHHHHHHHHHHhc----CCCceEEEEecCCCCcccchHHHHHhCCCchhhh
Confidence            877     3345677899999999888876653    678999999999943  45666777755455333

>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=1.7e-14  Score=132.18  Aligned_cols=174  Identities=21%  Similarity=0.284  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHH
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFV  161 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~  161 (313)
                      +..++++++..|+.+.-++.+....          +....       ....     ....++|.++|. +|+..|+..+.
T Consensus        23 a~~v~~~l~~~~~~~~~~~~~~~~~----------~~~~~-------~~~~-----~~~~~~~vvfp~lhG~~gEDg~iq   80 (317)
T COG1181          23 AKAVLRALKGFGYDVTPVDITEAGL----------WMLDK-------EVTK-----RVLQKADVVFPVLHGPYGEDGTIQ   80 (317)
T ss_pred             HHHHHHHHhhcCceeEEEeccccce----------EEecc-------ccch-----hhcccCCEEEEeCCCCCCCCchHH
Confidence            7889999999999998886554211          11110       0000     122457888986 68888999999


Q ss_pred             HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC----CHHHHHHHHHHhCCcEEEeeccCCCCccE
Q 021372          162 EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ----STEEAVKLADELGFPVMIKATAGGGGRGM  237 (313)
Q Consensus       162 ~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~----~~~~~~~~~~~lg~P~VvKP~~g~gg~GV  237 (313)
                      .+++-+|+|+.|++..+...+.||..++.+++..|+|++++.  ...    +.....+....++||++|||...+++.|+
T Consensus        81 g~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~--~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~  158 (317)
T COG1181          81 GLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYV--ALTRDEYSSVIVEEVEEGLGFPLFVKPAREGSSVGR  158 (317)
T ss_pred             HHHHHhCCCEecCchhhhhhcccHHHHHHHHHHCCCCcccee--eeecccchhHHHHHhhcccCCCEEEEcCCccceeeE
Confidence            999999999999999999999999999999999999999985  333    22334566678899999999999999999


Q ss_pred             EEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      .++++.+++..+++.+...      +.++++|+|+.| +|++|.++.+..
T Consensus       159 ~~v~~~~d~~~~~e~a~~~------d~~vl~e~~~~~-rei~v~vl~~~~  201 (317)
T COG1181         159 SPVNVEGDLQSALELAFKY------DRDVLREQGITG-REIEVGVLGNDY  201 (317)
T ss_pred             EEeeeccchHHHHHHHHHh------CCceeeccCCCc-ceEEEEecCCcc
Confidence            9999999999988887765      489999999998 999999998844

>TIGR02068 cya_phycin_syn cyanophycin synthetase

Probab=99.61  E-value=5e-15  Score=152.85  Aligned_cols=154  Identities=28%  Similarity=0.421  Sum_probs=119.6

Q ss_pred             CHHHHHHHHHhcCCCEEeeccCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC
Q 021372          131 LIPNVLSAAISRGCTMLHPGYGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ  208 (313)
Q Consensus       131 ~~~~l~~~~~~~~id~vip~~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~  208 (313)
                      +...|++.|.+++|.+.....+.+...  ....+.+...  ..--.+..++..+.||..++++|+++|||+|++.  .+.
T Consensus       160 st~~i~~~a~~rgip~~~l~~~~~~qlg~g~~~~~~~~~--~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~--~~~  235 (864)
T TIGR02068       160 STAAIVDEAEKRGIPYMRLSAGSLVQLGYGSRQKRIQAT--ETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGT--VVQ  235 (864)
T ss_pred             cHHHHHHHHHHCCCCEEEECCCCEEEecCCCEEEEEEee--cCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEE--EEC
Confidence            467899999999988776432211111  0000001000  1112578899999999999999999999999995  889


Q ss_pred             CHHHHHHHHHHhCCcEEEeeccCCCCccEEE-eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          209 STEEAVKLADELGFPVMIKATAGGGGRGMRL-AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       209 ~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~-v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      +.+++.++++++|||+|+||..|++|+||.+ +++.+++.++++.+...      +..+|||+||+| +||++.++   +
T Consensus       236 s~~ea~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~------~~~vlVEefI~G-~e~rvlVv---~  305 (864)
T TIGR02068       236 SAEDAWEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEE------SSGVIVERFITG-RDHRLLVV---G  305 (864)
T ss_pred             CHHHHHHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhh------CCcEEEEEeccC-CEEEEEEE---C
Confidence            9999999999999999999999999999998 99999999999987654      268999999999 99999776   3


Q ss_pred             CCEEEEeeccc
Q 021372          288 GNVVHFGERDC  298 (313)
Q Consensus       288 G~vv~~~~r~~  298 (313)
                      |+++....|..
T Consensus       306 ~~vvaa~~R~p  316 (864)
T TIGR02068       306 GKVVAVAERVP  316 (864)
T ss_pred             CEEEEEEEecC
Confidence            47888866644

Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional

Probab=99.61  E-value=1.8e-14  Score=145.92  Aligned_cols=111  Identities=25%  Similarity=0.328  Sum_probs=92.5

Q ss_pred             CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEe---CCHHHHHHH
Q 021372          174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLA---KEPDEFVKL  249 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v---~~~~el~~~  249 (313)
                      ++..+...+.||..++++|+++|||+|++.  .+.+.+++.+....+ |||+||||..|++|+||.++   ++.+++.++
T Consensus       478 ~s~~s~~~~~DK~~tk~lL~~~GIpvP~~~--~~~~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A  555 (752)
T PRK02471        478 DNYISPLIMENKVVTKKILAEAGFPVPAGD--EFTSLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKA  555 (752)
T ss_pred             CHHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EEcCHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHH
Confidence            345567788999999999999999999984  778888887777664 89999999999999999985   568888888


Q ss_pred             HHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       250 ~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      ++.+...      +..+||||||+| +||+|.++.   |+++....|
T Consensus       556 ~~~a~~~------~~~vlVEEfI~G-~E~Rv~Vig---gkvvaa~~R  592 (752)
T PRK02471        556 LEIAFRE------DSSVLVEEFIVG-TEYRFFVLD---GKVEAVLLR  592 (752)
T ss_pred             HHHHHhc------CCcEEEEecccC-CEEEEEEEC---CEEEEEEEE
Confidence            8876543      368999999999 999998883   477777665

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.59  E-value=1.9e-15  Score=148.93  Aligned_cols=207  Identities=21%  Similarity=0.312  Sum_probs=180.1

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      .+++||+|+|.+           |-+.++++++.|+.++++.++.........++|+.+.++        ...+.+...+
T Consensus       377 ~~kVlvlGSGGLsIGQAGEFDYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflp--------vT~~~vt~vi  448 (1435)
T KOG0370|consen  377 VKKVLVLGSGGLSIGQAGEFDYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLP--------VTPEYVTKVI  448 (1435)
T ss_pred             ccEEEEEccCCccccccceeeeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEee--------cCHHHHHHHH
Confidence            589999997764           678999999999999999888777777778999999884        5677888888


Q ss_pred             HhcCCCEEeeccCcC-ccc--HH--HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372          140 ISRGCTMLHPGYGFL-AEN--AV--FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV  214 (313)
Q Consensus       140 ~~~~id~vip~~g~~-~e~--~~--~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~  214 (313)
                      +.+.+|+++.++|.- .-+  ..  -...++..+++++|.+.+++....|+..+.+.+.+.+.++.++  ..+++.+++.
T Consensus       449 ~~erPd~il~tfggqtaLncgvel~k~gvf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei~e~ia~s--~a~~sie~al  526 (1435)
T KOG0370|consen  449 KAERPDGILLTFGGQTALNCGVELDKAGVFAQYGVKVLGTPIQTIITTEDRDLFARALNEINEKIAPS--EAVSTIEEAL  526 (1435)
T ss_pred             HhhCCCeEEEecCCccccccceeeeecccccccchhhhCCCcccceeeccHHHHHHHHHhhcccccch--hhHhHHHHHH
Confidence            999999999987521 111  11  2346778899999999999999999999999999999999998  4899999999


Q ss_pred             HHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       215 ~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ++++.+|||+++.....-||.|--++++.+||.+........+      .+++||+-+.|++|+..++++|..++++.+
T Consensus       527 ~aae~l~ypvivRaayalgglgSgfa~n~eeL~~l~~~a~a~s------~QilvekSlkGwkevEyevvrDa~~nciTv  599 (1435)
T KOG0370|consen  527 EAAERLGYPVIVRAAYALGGLGSGFANNEEELQDLAAQALALS------PQILVEKSLKGWKEVEYEVVRDAYDNCITV  599 (1435)
T ss_pred             HHHHhcCcHHHHHHHHHhcCccccccccHHHHHHHHhhccccC------ceeeehhhhccccceEEEEEeccccchhhh
Confidence            9999999999999999999999999999999999888776543      899999999999999999999998888776

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Probab=99.56  E-value=3.7e-14  Score=141.88  Aligned_cols=111  Identities=24%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCC---HHHHHHH
Q 021372          174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKE---PDEFVKL  249 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~---~~el~~~  249 (313)
                      .+..+..++.||..++++|+++|||+|++.  .+.+.+++.+....+ +||+||||..|++|+||.++.+   .+++.++
T Consensus       465 tS~ia~~i~~DK~~TK~iL~~aGIPVP~g~--~~~~~~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~A  542 (737)
T TIGR01435       465 DNYVSPLIMENKVVTKKVLAEAGFRVPFGD--EFSSQALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEA  542 (737)
T ss_pred             ccHHHHHHhcCHHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHH
Confidence            456678899999999999999999999984  778877777666666 6999999999999999999765   7888888


Q ss_pred             HHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          250 LQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       250 ~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      +..+...      +..+|||+||+| +||+|.|+.+   +++.+..|
T Consensus       543 l~~A~~~------~~~VLVEefI~G-~EyRv~VIg~---kvvaa~~R  579 (737)
T TIGR01435       543 LNIAFSE------DSSVIIEEFLPG-TEYRFFVLND---KVEAVLLR  579 (737)
T ss_pred             HHHHHhc------CCeEEEEecccC-CEEEEEEECC---eEEEEEEE
Confidence            8776543      368999999999 9999999854   67766554

gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.

>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6

Probab=99.56  E-value=2.7e-14  Score=123.45  Aligned_cols=95  Identities=25%  Similarity=0.488  Sum_probs=74.7

Q ss_pred             HHHHCCCCCCCCCcccCCCHHH----HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcE
Q 021372          191 TMKNAGVPTVPGSDGLLQSTEE----AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV  266 (313)
Q Consensus       191 ~l~~~Gip~p~~~~~~~~~~~~----~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~v  266 (313)
                      +++++|||+|+++  .+...+.    ..+....++||+||||..+++|.||.++++.+||.++++.+.+.      +..+
T Consensus         1 l~~~~gI~tp~~~--~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~------~~~v   72 (203)
T PF07478_consen    1 LLKSAGIPTPPYV--VVKKNEDDSDSIEKILEDLGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKY------DDDV   72 (203)
T ss_dssp             HHHHTT-BB-SEE--EEETTSHHHHHHHHHHHHHSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTT------HSEE
T ss_pred             ChhhcCCCCCCEE--EEecccccchhHHHHHhhcCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhh------cceE
Confidence            5789999999996  4443322    23567789999999999999999999999999999999988654      3799


Q ss_pred             EEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          267 YLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       267 lvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      ||||||+| +|++|.++.++...+....
T Consensus        73 lVEefI~G-~E~tv~vl~~~~~~~~~~~   99 (203)
T PF07478_consen   73 LVEEFISG-REFTVGVLGNGEPRVLPPV   99 (203)
T ss_dssp             EEEE--SS-EEEEEEEEESSSTEEEEEE
T ss_pred             EEEeeecc-cceEEEEEecCCcccCceE
Confidence            99999999 9999999998764554443

3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....

>PRK12458 glutathione synthetase; Provisional

Probab=99.54  E-value=3.1e-13  Score=125.66  Aligned_cols=194  Identities=14%  Similarity=0.179  Sum_probs=123.6

Q ss_pred             CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCC--CCCCcCCHHHHHHH-------HHhcCCCEEee
Q 021372           79 RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP--SSQSYLLIPNVLSA-------AISRGCTMLHP  149 (313)
Q Consensus        79 ~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~--~~~~~~~~~~l~~~-------~~~~~id~vip  149 (313)
                      ...+...++.+++++||++.+++............+.....+....  ..+.+  . ...+.       ..-..+|+|++
T Consensus         9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~d~V~~   85 (338)
T PRK12458          9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENF--L-SFLKKAEFKKERLPLAGFDVIFL   85 (338)
T ss_pred             CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccch--h-hHhhccccccccCchhhCCEEEE
Confidence            3456889999999999999998654432221122221111121000  00100  0 01110       11134899998


Q ss_pred             ccC--cCcccHHHH--------HHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH
Q 021372          150 GYG--FLAENAVFV--------EMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE  219 (313)
Q Consensus       150 ~~g--~~~e~~~~~--------~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~  219 (313)
                      -.+  ...+...++        ..++..|++++ ++++++..+.||..+.++++   +++|+|+  +..+.+++.++.++
T Consensus        86 R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~vi-N~p~~i~~~~dK~~~~~l~~---~~vP~T~--v~~~~~~~~~~~~~  159 (338)
T PRK12458         86 RANPPLDPLARNWADSVGIAFGRLAARDGVLVV-NDPDGLRIANNKLYFQSFPE---EVRPTTH--ISRNKEYIREFLEE  159 (338)
T ss_pred             eCCCCCChHHHHHHHHhchhHHHHHHhCCCeEe-cCHHHHHhccCHHHHHhhcc---CCCCCEE--EeCCHHHHHHHHHH
Confidence            532  111111222        33356788877 99999999999999987665   6889985  67788889889888


Q ss_pred             hCCc-EEEeeccCCCCccEEEeCCHHH--HHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEE
Q 021372          220 LGFP-VMIKATAGGGGRGMRLAKEPDE--FVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVV  291 (313)
Q Consensus       220 lg~P-~VvKP~~g~gg~GV~~v~~~~e--l~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv  291 (313)
                      .++| +|+||..|++|+||+++++.++  +...++.+..       ..++|+|+||++  ..++++.++   +|+++
T Consensus       160 ~~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~-------~~~~ivQeyI~~~~~gDiRv~vv---~g~~v  226 (338)
T PRK12458        160 SPGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSG-------DGYVIAQEYLPGAEEGDVRILLL---NGEPL  226 (338)
T ss_pred             cCCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhh-------CCCEEEEEcccCCCCCCEEEEEE---CCEEE
Confidence            8765 9999999999999999976653  5555544322       258999999986  346666654   34666

>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6

Probab=99.54  E-value=4.6e-14  Score=119.74  Aligned_cols=104  Identities=30%  Similarity=0.507  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE-EEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV-MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG  262 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~-VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~  262 (313)
                      +|..+|++|+++|||++++  ..+++.+++.+++++.++|+ |||+..-++|+||.++.|.+|..++++++....  .++
T Consensus         2 SK~faK~fm~~~~IPTa~~--~~f~~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~--~fg   77 (194)
T PF01071_consen    2 SKSFAKEFMKRYGIPTAKY--KVFTDYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDR--KFG   77 (194)
T ss_dssp             BHHHHHHHHHHTT-SB--E--EEESSHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSS--TTC
T ss_pred             CHHHHHHHHHHcCCCCCCe--eEECCHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcccc--ccC
Confidence            7999999999999999988  49999999999999999999 999999999999999999999999999987532  233


Q ss_pred             --CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          263 --NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       263 --~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                        ...++||||+.| .|+++.++.|++ +++.+
T Consensus        78 ~~~~~vvIEE~l~G-~E~S~~a~~dG~-~~~~l  108 (194)
T PF01071_consen   78 DAGSKVVIEEFLEG-EEVSLFALTDGK-NFVPL  108 (194)
T ss_dssp             CCGSSEEEEE---S-EEEEEEEEEESS-EEEEE
T ss_pred             CCCCcEEEEeccCC-eEEEEEEEEcCC-eEEEC
Confidence              468999999999 999999999976 44444

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....

>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []

Probab=99.52  E-value=3.7e-14  Score=121.49  Aligned_cols=104  Identities=32%  Similarity=0.525  Sum_probs=66.9

Q ss_pred             hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc
Q 021372          182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA  260 (313)
Q Consensus       182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~  260 (313)
                      +.||..+.++|+++|||+|+|.  ++.+.+++.++.+++ ++|+|+||..|+.|.||.++++.+++...++.....    
T Consensus         1 a~dK~~~~~~l~~~gipvP~t~--~~~~~~~~~~~~~~~~~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~----   74 (190)
T PF08443_consen    1 AEDKLLTLQLLAKAGIPVPETR--VTNSPEEAKEFIEELGGFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRL----   74 (190)
T ss_dssp             -HBHHHHHHHHHHTT-----EE--EESSHHHHHHHHHHH--SSEEEE-SB-------EEEESHCHHHHHHH---------
T ss_pred             CCCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhc----
Confidence            3699999999999999999995  888999999999999 899999999999999999999999999988765432    


Q ss_pred             CCCCcEEEeeccCCC--cEEEEEEEEcCCCCEEEEeec
Q 021372          261 FGNDGVYLEKYVQNP--RHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       261 ~~~~~vlvEe~I~G~--~e~~v~v~~d~~G~vv~~~~r  296 (313)
                        ...+++|+||+..  ++++|.++.+   +++....|
T Consensus        75 --~~~~~~Q~fI~~~~g~d~Rv~Vig~---~vv~a~~r  107 (190)
T PF08443_consen   75 --ENPILVQEFIPKDGGRDLRVYVIGG---KVVGAYRR  107 (190)
T ss_dssp             --TTT-EEEE----SS---EEEEEETT---EEEEEEE-
T ss_pred             --cCcceEeccccCCCCcEEEEEEECC---EEEEEEEE
Confidence              3789999999973  5899988855   66665444

It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.

>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis

Probab=99.51  E-value=8.6e-14  Score=116.71  Aligned_cols=95  Identities=26%  Similarity=0.492  Sum_probs=80.6

Q ss_pred             HHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee-ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372          192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK  270 (313)
Q Consensus       192 l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP-~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe  270 (313)
                      |+++|||+|+|.  .+.+.+++.++++++|||+|+|+ ..|..|+|.+++++.+++..+++.+        +..++|+|+
T Consensus         1 l~~~gip~~~~~--~i~~~~~l~~a~~~iG~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~   70 (172)
T PF02222_consen    1 LDELGIPTAPYA--TIDSLEDLEEAAESIGFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEE   70 (172)
T ss_dssp             HHHTT--B-EEE--EESSHHHHHHHHHHHTSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE
T ss_pred             CcccCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEe
Confidence            689999999995  99999999999999999999995 5667999999999999999999886        348999999


Q ss_pred             ccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          271 YVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       271 ~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      ||+..+|+++.+.++.+|++.++.-.
T Consensus        71 ~v~f~~EiSvivaR~~~G~~~~yp~~   96 (172)
T PF02222_consen   71 FVPFDREISVIVARDQDGEIRFYPPV   96 (172)
T ss_dssp             ---ESEEEEEEEEEETTSEEEEEEEE
T ss_pred             ccCCcEEEEEEEEEcCCCCEEEEcCc
Confidence            99999999999999999998888654

This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....

>PLN02941 inositol-tetrakisphosphate 1-kinase

Probab=99.47  E-value=1.2e-12  Score=120.21  Aligned_cols=154  Identities=15%  Similarity=0.175  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcc-cHHH-
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAE-NAVF-  160 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e-~~~~-  160 (313)
                      -..++++++++|+.++.++.+. +..  .                             +..+|+|+--... .. ...+ 
T Consensus        38 ~~~l~~~~~~~Gi~~v~Id~~~-pl~--~-----------------------------qgpfDvilhK~~~-~~~~~~~~   84 (328)
T PLN02941         38 QPSLEALARSKGIDLVAIDPSR-PLS--E-----------------------------QGPFDVILHKLYG-KEWRQQLE   84 (328)
T ss_pred             hHHHHHHHHHCCCeEEEecCCC-Ccc--c-----------------------------cCCcCEEEEecCC-HHHHHHHH
Confidence            4568899999999999996542 111  0                             0123444322100 01 1122 


Q ss_pred             HHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-------CCCCCCCcccCCCHHHHH---HHHHHhCCcEEEeecc
Q 021372          161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-------VPTVPGSDGLLQSTEEAV---KLADELGFPVMIKATA  230 (313)
Q Consensus       161 ~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G-------ip~p~~~~~~~~~~~~~~---~~~~~lg~P~VvKP~~  230 (313)
                      ....+..|++++ ++++++..+.||..+.++|+++|       ||+|+++  .+.+.+.+.   .....++||+|+||..
T Consensus        85 ~~~~e~pgv~vi-dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~--v~~~~~~al~~~~~~~~l~~P~V~KPl~  161 (328)
T PLN02941         85 EYREKHPDVTVL-DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQL--VVYDDESSIPDAVALAGLKFPLVAKPLV  161 (328)
T ss_pred             HHHHHCCCcEEE-CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEE--EEcCHHHHHHHHHHHhcCCCCEEEeecc
Confidence            233455688888 89999999999999999999999       9999996  777766533   3346789999999999


Q ss_pred             C---CCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC-CCcEEEEEEEEc
Q 021372          231 G---GGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-NPRHIEFQVLAD  285 (313)
Q Consensus       231 g---~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~-G~~e~~v~v~~d  285 (313)
                      |   +.|+++.++.+.++|..    +         ..++++||||+ |++.|.|.|++|
T Consensus       162 g~Gss~gh~m~lv~~~~~L~~----l---------~~p~~lQEfVnh~g~d~RVfVvGd  207 (328)
T PLN02941        162 ADGSAKSHKMSLAYDQEGLSK----L---------EPPLVLQEFVNHGGVLFKVYVVGD  207 (328)
T ss_pred             cCCCccccceEEecCHHHHHh----c---------CCcEEEEEecCCCCEEEEEEEECC
Confidence            9   89999999999988876    1         25799999994 359999999987

>TIGR01380 glut_syn glutathione synthetase, prokaryotic

Probab=99.47  E-value=1.2e-12  Score=120.69  Aligned_cols=192  Identities=16%  Similarity=0.188  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC--cCcc--
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG--FLAE--  156 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g--~~~e--  156 (313)
                      +...++++++++|+++.+++.+.-........+... +.+.. . ...+.....- ....-..+|+|++-.+  +..+  
T Consensus        19 st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~-~~~~l~~~D~v~~R~~~~~~~~~~   95 (312)
T TIGR01380        19 TTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGP-N-KQDWYTLGEK-VRLSLGELDAVLMRKDPPFDMEYI   95 (312)
T ss_pred             hHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEecc-C-CcceeecCcc-cccccccCCEEEEeCCCCCChhhh
Confidence            578999999999999999965433222111111111 11110 0 1111110000 0011125899997642  1111  


Q ss_pred             -cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCc
Q 021372          157 -NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR  235 (313)
Q Consensus       157 -~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~  235 (313)
                       ...+.+.++..|++++ |+++++..+.||..+.+++.    ++|+|.  ...+.+++.+++++.| |+|+||..|++|+
T Consensus        96 ~~~~~l~~le~~g~~vi-N~p~~i~~~~dK~~~~~~~~----~vP~T~--v~~~~~~~~~~~~~~g-~vVvKPl~G~~G~  167 (312)
T TIGR01380        96 YATYLLELADPTGTLVI-NSPQGLRDANEKLFTLQFPK----VIPPTL--VTRDKAEIRAFLAEHG-DIVLKPLDGMGGE  167 (312)
T ss_pred             HHHHHHHHHHhCCCeEE-eCHHHHHhhhhHHHHhhCcC----CCCCEE--EeCCHHHHHHHHHHcC-CEEEEECCCCCCc
Confidence             1467788888899988 89999999999999888763    799995  6778999999999888 9999999999999


Q ss_pred             cEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEE
Q 021372          236 GMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       236 GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~  292 (313)
                      ||+++++. .++...++.+...     +..++++|+||+.  ..|+++.++.   |+++.
T Consensus       168 gv~~v~~~~~~~~~~~~~~~~~-----~~~~~~vQ~yI~~~~~~D~Rv~vv~---g~vv~  219 (312)
T TIGR01380       168 GIFRLDPGDPNFNSILETMTQR-----GREPVMAQRYLPEIKEGDKRILLID---GEPIG  219 (312)
T ss_pred             eEEEEcCCCccHHHHHHHHHhc-----cCCcEEEEeccccccCCCEEEEEEC---CeEEE
Confidence            99998753 3343333332211     2368999999984  3788888774   46554

This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.

>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]

Probab=99.47  E-value=3.4e-12  Score=113.40  Aligned_cols=215  Identities=18%  Similarity=0.235  Sum_probs=154.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCH--HHHHHHHHhcCCCE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTM  146 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id~  146 (313)
                      +.-+|..+|+. +|+++.+.|++.|++++++..... ..-.....+++.+.++      +|.++  +++.+..++  -++
T Consensus        17 ~~i~Iat~gSH-SaL~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~------~f~dil~~~iqe~L~~--~n~   87 (361)
T COG1759          17 EDITIATIGSH-SALQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVD------KFSDILNEEIQEELRE--LNA   87 (361)
T ss_pred             cceEEEEeecc-hHHHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEec------hhHHHhhHHHHHHHHH--cCe
Confidence            34567778766 589999999999999999875332 2222333456677664      23221  123333333  456


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI  226 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv  226 (313)
                      |+..++++....-.-....+.-+|++| +...++.-.|...-+.+|+++||+.|+    ..++++|+       .-|+||
T Consensus        88 I~IP~gSfv~Y~G~d~ie~~~~vP~fG-nR~lLrwE~~~~~~~~lLekAgi~~P~----~~~~PeeI-------dr~VIV  155 (361)
T COG1759          88 IFIPHGSFVAYVGYDGIENEFEVPMFG-NRELLRWEEDRKLEYKLLEKAGLRIPK----KYKSPEEI-------DRPVIV  155 (361)
T ss_pred             EEecCCceEEEecchhhhhcccCcccc-cHhHhhhhcchhhHHHHHHHcCCCCCc----ccCChHHc-------CCceEE
Confidence            666666665554444455667899997 678888888999999999999999997    45777765       459999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh-cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEeeccchhhccc
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQVIE  304 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~-~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s~~r~~  304 (313)
                      |....-||+|-+++.|.+|+.+..+++.+...- .-+-.+..+||||-| ..+.+..+... .++ +-+    .++.||.
T Consensus       156 K~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~G-~~f~~~yFyS~i~~~-lEl----~g~D~R~  229 (361)
T COG1759         156 KLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVVG-APFYFHYFYSPIKDR-LEL----LGIDRRY  229 (361)
T ss_pred             ecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEeec-cceeeeeeeccccCc-eeE----eeeehee
Confidence            999988999999999999999999988763210 001247899999999 78888888776 433 444    5788998


Q ss_pred             ceeEEee
Q 021372          305 IHTHTEI  311 (313)
Q Consensus       305 ~~~ie~~  311 (313)
                      +..+|.+
T Consensus       230 Esn~Dg~  236 (361)
T COG1759         230 ESNLDGL  236 (361)
T ss_pred             eccchhh
Confidence            8888876

>PRK05246 glutathione synthetase; Provisional

Probab=99.46  E-value=1.8e-12  Score=119.74  Aligned_cols=196  Identities=13%  Similarity=0.113  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcC-cc---
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFL-AE---  156 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~-~e---  156 (313)
                      +...++++++++|+++.+++...-......-.+... +.++.  ....+..... .+...-..+|+|++..+.. ..   
T Consensus        20 st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~--~~~~w~~~~~-~~~~~l~~~D~v~~R~~~~~~~~~~   96 (316)
T PRK05246         20 STFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRD--DKGDWYELGE-EQRLPLADFDVILMRKDPPFDMEYI   96 (316)
T ss_pred             hHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEecc--CCccceeccc-cccCccccCCEEEEcCCCCCChHHH
Confidence            478899999999999999865432221111001000 11111  1111110000 0000012389999763211 11   


Q ss_pred             -cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCc
Q 021372          157 -NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR  235 (313)
Q Consensus       157 -~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~  235 (313)
                       ...+.+.++..|++++ |+++++..+.||..+.+++.    ++|+|.  ...+.+++.++.++.+ |+|+||..|++|+
T Consensus        97 ~~~~~l~~le~~g~~v~-N~p~~l~~~~dK~~~~~l~~----~vP~T~--~~~~~~~~~~~~~~~~-~vVlKP~~G~~G~  168 (316)
T PRK05246         97 YATYLLERAERPGTLVV-NKPQSLRDANEKLFTLWFPE----LMPPTL--VTRDKAEIRAFRAEHG-DIILKPLDGMGGA  168 (316)
T ss_pred             HHHHHHHHHHhCCCeEE-CCHHHHHhCccHHHHHhhhc----cCCCEE--EeCCHHHHHHHHHHCC-CEEEEECCCCCcc
Confidence             1346677777899888 89999999999999988766    789984  7788899999999887 9999999999999


Q ss_pred             cEEEeCC-HHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEE-Eeec
Q 021372          236 GMRLAKE-PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH-FGER  296 (313)
Q Consensus       236 GV~~v~~-~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~-~~~r  296 (313)
                      ||+++.+ ..++...++.+...     +..++|+|+||+.  ..++++.++   +|++++ ...|
T Consensus       169 gV~~i~~~~~~~~~~~~~l~~~-----~~~~~lvQ~~I~~~~~~D~Rv~vv---~g~vv~~a~~R  225 (316)
T PRK05246        169 GIFRVKADDPNLGSILETLTEH-----GREPVMAQRYLPEIKEGDKRILLV---DGEPVGYALAR  225 (316)
T ss_pred             ceEEEeCCCccHHHHHHHHHHc-----cCCeEEEEeccccCCCCCEEEEEE---CCEEhhheeEe
Confidence            9999944 44444444433221     2468999999986  468888877   346666 4444

>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]

Probab=99.40  E-value=3.3e-12  Score=114.01  Aligned_cols=182  Identities=19%  Similarity=0.218  Sum_probs=125.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCC--cCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~--~~~~~~l~~~~~~~--~id~  146 (313)
                      +-|||++|-.  .+.++.+|.++|++|..++.-.....  ...++..++..+......  ..+.++|++++.+.  .+|+
T Consensus        11 ~~kiLviGvn--tR~vveSA~klGf~V~sv~~y~~~Dl--~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~   86 (389)
T COG2232          11 SCKILVIGVN--TRPVVESASKLGFEVYSVQYYDPADL--PGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDA   86 (389)
T ss_pred             cceEEEEeec--chHhHHHHHhcCeEEEEeEeeccccc--ccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcce
Confidence            4579999965  77899999999999998865333222  234555555533322222  45778999988754  4777


Q ss_pred             -EeeccCcCcccHHHHHHHHHcCCceeCCCHH-HHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE
Q 021372          147 -LHPGYGFLAENAVFVEMCREHGINFIGPNPD-SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV  224 (313)
Q Consensus       147 -vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~-~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~  224 (313)
                       ++|..++...+.     --+.+..+.|++++ ....+.+|..+++.++.+|+|.|+.+  ..   +    ....--+++
T Consensus        87 ~ii~~sg~e~l~~-----~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgmp~p~~~--~~---e----~~~~gekt~  152 (389)
T COG2232          87 PIIPFSGFEALRT-----SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGMPEPSEK--KI---E----PLEEGEKTL  152 (389)
T ss_pred             eeeeccccccccc-----cCccccccccCCcHHHHHHHHHHHhhhhhhhhcCCCCChhh--hh---h----hhhhcceee
Confidence             555544332221     12456778888888 88999999999999999999999874  22   1    111223689


Q ss_pred             EEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       225 VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      |+||..|+||. +.++.-.++..               ..++|+||||+| ..+++.++.++.
T Consensus       153 IlKPv~GaGG~-~el~~~~Ee~~---------------~~~~i~Qefi~G-~p~Svs~is~g~  198 (389)
T COG2232         153 ILKPVSGAGGL-VELVKFDEEDP---------------PPGFIFQEFIEG-RPVSVSFISNGS  198 (389)
T ss_pred             EEeeccCCCce-eeecccccccC---------------CcceehhhhcCC-ceeEEEEEecCc
Confidence            99999999995 22222112211               168999999999 999999999975

>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional

Probab=99.31  E-value=2.2e-11  Score=115.54  Aligned_cols=110  Identities=29%  Similarity=0.402  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh-CCcEEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEA  257 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~  257 (313)
                      .+++.++++|+++|||+|++.  .+.+.+++.++++++ |||+|+||....+|+    ||.+..+.+++.++++++....
T Consensus         3 l~e~~ak~lL~~~gIpvp~~~--~~~~~~ea~~~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~   80 (388)
T PRK00696          3 LHEYQAKELFAKYGVPVPRGI--VATTPEEAVEAAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMT   80 (388)
T ss_pred             CCHHHHHHHHHHcCCCCCCCe--eeCCHHHHHHHHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccc
Confidence            468899999999999999995  899999999999999 999999998544444    8999999999999999887432


Q ss_pred             H---hc--CC--CCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEe
Q 021372          258 A---AA--FG--NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG  294 (313)
Q Consensus       258 ~---~~--~~--~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~  294 (313)
                      .   ..  .+  ...++||+|++++.|+.+.+..|+ +|.++.++
T Consensus        81 ~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~fgpvv~~~  125 (388)
T PRK00696         81 LVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRATRRVVFMA  125 (388)
T ss_pred             eeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCCCceEEEE
Confidence            1   00  01  135999999996699999999997 78887653

>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []

Probab=99.24  E-value=4.9e-12  Score=105.46  Aligned_cols=89  Identities=20%  Similarity=0.346  Sum_probs=46.3

Q ss_pred             hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcC
Q 021372          182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF  261 (313)
Q Consensus       182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~  261 (313)
                      |.||++++++|+++|||+|.++  .....       ....+|+|+||..|+||.|++++++.+++...+..         
T Consensus         1 ~~dK~~~~~~L~~~gi~~P~~~--~~~~~-------~~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~---------   62 (161)
T PF02655_consen    1 CSDKLKTYKFLKELGIPVPTTL--RDSEP-------EPIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNK---------   62 (161)
T ss_dssp             -TSHHHHHHHHTTT-S----------EES-------S--SSSEEEEESS-------B--SS--TTE--------------
T ss_pred             CCCHHHHHHHHHccCCCCCCcc--ccccc-------cccCCcEEEEeCCCCCCCCeEEECCchhhcccccc---------
Confidence            5799999999999999999542  11111       12368999999999999999999999888776543         


Q ss_pred             CCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          262 GNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       262 ~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                         ..++||||+| .++++.++.++. +...+
T Consensus        63 ---~~i~Qe~i~G-~~~Sv~~l~~~~-~~~~l   89 (161)
T PF02655_consen   63 ---LRIVQEFIEG-EPYSVSFLASGG-GARLL   89 (161)
T ss_dssp             -----EEEE---S-EEEEEEEEE-SS-SEEEE
T ss_pred             ---ceEEeeeeCC-EEeEEEEEEeCC-ceEEE
Confidence               2399999999 999999999864 44444

This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.

>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit

Probab=99.23  E-value=1.3e-10  Score=110.24  Aligned_cols=109  Identities=24%  Similarity=0.369  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeec--cCC-CC-ccEEEeCCHHHHHHHHHHHHHHHH
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKAT--AGG-GG-RGMRLAKEPDEFVKLLQQAKSEAA  258 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~--~g~-gg-~GV~~v~~~~el~~~~~~~~~~~~  258 (313)
                      +.+..|++|+++|||+|++.  .+.+.+++.++++++| ||+|+||.  .|+ ++ -||+++.+.+|+.++++++.....
T Consensus         4 ~E~~aK~ll~~~GIpvp~~~--~~~~~~ea~~~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~   81 (386)
T TIGR01016         4 HEYQAKQIFAKYGIPVPRGY--VATSVEEAEEIAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKEL   81 (386)
T ss_pred             cHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccce
Confidence            56788999999999999985  7899999999999999 99999998  322 22 389999999999999988764211


Q ss_pred             hc-------CCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEEe
Q 021372          259 AA-------FGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHFG  294 (313)
Q Consensus       259 ~~-------~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~~  294 (313)
                      ..       ..-..++||+|+++++|+.+.++.|+  .|.++.++
T Consensus        82 ~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~  126 (386)
T TIGR01016        82 VTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMAS  126 (386)
T ss_pred             eecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEE
Confidence            00       00136999999995599999999996  56677665

This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G

>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A

Probab=99.21  E-value=1.2e-10  Score=101.58  Aligned_cols=112  Identities=32%  Similarity=0.518  Sum_probs=80.0

Q ss_pred             hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC-----CCccEEE-eCCHHHHHHHHHHHHH
Q 021372          182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRL-AKEPDEFVKLLQQAKS  255 (313)
Q Consensus       182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~-----gg~GV~~-v~~~~el~~~~~~~~~  255 (313)
                      ..+-...+++|+.+|||+|++.  .+.+.+++.++++++|||+++|-....     .--||.+ ++|++++.++++++..
T Consensus         9 ~L~e~e~~~lL~~yGI~~~~~~--~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~   86 (222)
T PF13549_consen    9 WLTEAEAKELLAAYGIPVPPTR--LVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRE   86 (222)
T ss_dssp             EE-HHHHHHHHHTTT------E--EESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCcCCCCee--EeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHH
Confidence            4567788999999999999995  899999999999999999999998654     3337877 8999999999999987


Q ss_pred             HHHhcCC---CCcEEEeeccC-CCcEEEEEEEEcC-CCCEEEEee
Q 021372          256 EAAAAFG---NDGVYLEKYVQ-NPRHIEFQVLADK-YGNVVHFGE  295 (313)
Q Consensus       256 ~~~~~~~---~~~vlvEe~I~-G~~e~~v~v~~d~-~G~vv~~~~  295 (313)
                      ......+   ...++||++++ ++.|+.+.+..|. +|.++.+|-
T Consensus        87 ~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~FGPvv~~G~  131 (222)
T PF13549_consen   87 RVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQFGPVVMFGL  131 (222)
T ss_dssp             HHHHH-TT----EEEEEE------EEEEEEEEEETTTEEEEEEEE
T ss_pred             HHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCCCCEEEEcC
Confidence            7654333   35899999999 5599999999998 899998853

>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein

Probab=98.92  E-value=9.4e-09  Score=94.02  Aligned_cols=70  Identities=17%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh--CC-cEEEeeccCCCCccEEEeCCHHH
Q 021372          174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL--GF-PVMIKATAGGGGRGMRLAKEPDE  245 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l--g~-P~VvKP~~g~gg~GV~~v~~~~e  245 (313)
                      |+.+....+.||..+..+|+++|||+|+|+  .+.+.+...+.+.++  ++ |+|+||..|++|+||.++++.++
T Consensus        27 N~r~~~~~~~DK~~t~~lL~~aglpvP~T~--~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~GrGI~~i~~~~~   99 (317)
T TIGR02291        27 NKRSLYPLVDDKLKTKIIAQAAGITVPELY--GVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGKGILVITSRKD   99 (317)
T ss_pred             CCchhccccccHHHHHHHHHHcCCCCCCEE--EecCchhhHHHHHHHHccCCCEEEEECCCCCccCeEEEEeccc
Confidence            788888899999999999999999999986  555555333333333  56 69999999999999999976533

Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.

>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]

Probab=98.91  E-value=6.9e-09  Score=89.91  Aligned_cols=94  Identities=20%  Similarity=0.373  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccE
Q 021372          158 AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM  237 (313)
Q Consensus       158 ~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV  237 (313)
                      ..+.+.+++. ...+|+++++++.+.||+.+++.|+.+ +++|+++  -          +.+.+-.+|+||+.|.||.|+
T Consensus        89 y~Ltri~E~~-~~nLG~S~~Ai~v~aDK~lty~aLr~a-V~~p~t~--e----------~~~~~~k~ViKp~dgCgge~i  154 (307)
T COG1821          89 YSLTRIYEEY-VENLGCSPRAIRVAADKRLTYKALRDA-VKQPPTR--E----------WAEEPKKYVIKPADGCGGEGI  154 (307)
T ss_pred             HHHHHHHHHH-hHhhCCCHHHHhHhhhHHHHHHHHhhh-ccCCCcc--c----------cccCCceEEecccccCCccee
Confidence            4566777776 667899999999999999999999999 9999985  1          223445789999999999999


Q ss_pred             EEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       238 ~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      .+..+..++                   .|+||||+| .+++|. +.++
T Consensus       155 ~~~~~~pd~-------------------~i~qEfIeG-~~lSVS-L~~G  182 (307)
T COG1821         155 LFGRDFPDI-------------------EIAQEFIEG-EHLSVS-LSVG  182 (307)
T ss_pred             eccCCCcch-------------------hhHHHhcCC-cceEEE-EecC
Confidence            888775442                   588999999 999999 4443

>PRK14046 malate--CoA ligase subunit beta; Provisional

Probab=98.86  E-value=3.8e-08  Score=93.24  Aligned_cols=109  Identities=23%  Similarity=0.231  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCC----CCccEEEeCCHHHHHHHHHHHHHHHH
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGG----GGRGMRLAKEPDEFVKLLQQAKSEAA  258 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~----gg~GV~~v~~~~el~~~~~~~~~~~~  258 (313)
                      +-+..+++|+++|||+|+++  .+.+.+++.+.++++||| +|+|...-.    -+.||.+..|++|+.++++++.....
T Consensus         4 ~E~eak~lL~~yGIpvp~~~--~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~   81 (392)
T PRK14046          4 HEYQAKELLASFGVAVPRGA--LAYSPEQAVYRARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKL   81 (392)
T ss_pred             cHHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchh
Confidence            35678999999999999995  899999999999999995 599974322    33368888999999999999876421


Q ss_pred             ---h----cCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEe
Q 021372          259 ---A----AFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG  294 (313)
Q Consensus       259 ---~----~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~  294 (313)
                         .    ...-..++||+++++..|+.+.+..|. +|.++.++
T Consensus        82 ~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~g~~v~~~  125 (392)
T PRK14046         82 VTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKSERVRVIA  125 (392)
T ss_pred             hhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCCCcEEEEE
Confidence               0    011247999999998899999999997 88888774

>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=98.80  E-value=4.6e-08  Score=89.99  Aligned_cols=107  Identities=29%  Similarity=0.420  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHH----
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKS----  255 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~----  255 (313)
                      .+..+++|+++|||+|+++  .+.+.+++.+++.++| .|+|+|+.--.|||    ||+++.|.+|..++.+.+..    
T Consensus         5 EYqaKelf~~~GiPvp~g~--v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q   82 (387)
T COG0045           5 EYQAKELFAKYGIPVPPGY--VATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQ   82 (387)
T ss_pred             HHHHHHHHHHcCCCCCCce--eeeCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccc
Confidence            4778999999999999996  8999999999999998 89999998655555    59999999999999999876    


Q ss_pred             HHHhcCCCCcEEEeeccC-CCcEEEEEEEEcCCCCEEEE
Q 021372          256 EAAAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       256 ~~~~~~~~~~vlvEe~I~-G~~e~~v~v~~d~~G~vv~~  293 (313)
                      .......-..+|||+.++ -.+||-+.++.|...+...+
T Consensus        83 ~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~  121 (387)
T COG0045          83 TDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVL  121 (387)
T ss_pred             cCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEE
Confidence            211111125799999999 44499999999985444433

>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []

Probab=98.71  E-value=3.6e-08  Score=84.86  Aligned_cols=103  Identities=27%  Similarity=0.417  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHHHh
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAAA  259 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~~~  259 (313)
                      .+..+++|+++|||+|+++  ++.+.+++.++++.+|.+ +|+||.--.|||    ||.+++|++|+.++.+++......
T Consensus         4 EyqaK~ll~~~gi~vp~g~--~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~   81 (202)
T PF08442_consen    4 EYQAKELLRKYGIPVPRGV--VATSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK   81 (202)
T ss_dssp             HHHHHHHHHCTT----SEE--EESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred             HHHHHHHHHHcCCCCCCee--ecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence            4778999999999999995  899999999999999875 799998666555    489999999999999887643110


Q ss_pred             -------cCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372          260 -------AFGNDGVYLEKYVQNPRHIEFQVLADKYGN  289 (313)
Q Consensus       260 -------~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~  289 (313)
                             ...-..+||||+++-.+|+-+.++.|...+
T Consensus        82 T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~  118 (202)
T PF08442_consen   82 TKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESR  118 (202)
T ss_dssp             -TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTT
T ss_pred             eeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCC
Confidence                   011246899999999899999999997433

They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....

>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional

Probab=98.63  E-value=4e-07  Score=86.69  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh---CCcEEEeeccCCCC-----------ccEEEeCCHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL---GFPVMIKATAGGGG-----------RGMRLAKEPDEFVK  248 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l---g~P~VvKP~~g~gg-----------~GV~~v~~~~el~~  248 (313)
                      ...+..+++|+++|||+|++.  .+.+.+|+.+.++++   ++|+|+|+.--.||           -||.+.++ +|+.+
T Consensus        30 l~EyqaK~LL~~~GIpvp~~~--va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~~  106 (422)
T PLN00124         30 IHEYQGAELMSKYGVNVPKGA--AASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAEE  106 (422)
T ss_pred             CCHHHHHHHHHHcCCCCCCce--eeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHHH
Confidence            457788999999999999984  889999999999998   69999999843333           34666766 99999


Q ss_pred             HHHHHHHHHH--h-----cCCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEE
Q 021372          249 LLQQAKSEAA--A-----AFGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVH  292 (313)
Q Consensus       249 ~~~~~~~~~~--~-----~~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~  292 (313)
                      +++++.....  .     ...-..++++|.+....|+-+.+..|+  .|.++.
T Consensus       107 aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil  159 (422)
T PLN00124        107 LAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLII  159 (422)
T ss_pred             HHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEE
Confidence            9998875411  0     011235776666655599999999996  466664

>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp

Probab=98.53  E-value=7.1e-07  Score=81.19  Aligned_cols=112  Identities=18%  Similarity=0.294  Sum_probs=78.9

Q ss_pred             CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-------c--cCCCHHHHHHHHHHh-CCcEEEeeccCCCCccEEEeCCH
Q 021372          174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSD-------G--LLQSTEEAVKLADEL-GFPVMIKATAGGGGRGMRLAKEP  243 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-------~--~~~~~~~~~~~~~~l-g~P~VvKP~~g~gg~GV~~v~~~  243 (313)
                      ++.+....+.||..+++++.++|||+|+.+.       .  ...+.+++.+++... ..++|+||..|++|+|+.+++..
T Consensus        16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~   95 (285)
T PF14397_consen   16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR   95 (285)
T ss_pred             CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence            6778888999999999999999999999421       0  124667788887664 57999999999999999998655


Q ss_pred             H------HHHHHHHHHHHHHHhcCCCCcEEEeeccCC-----------CcEEEEEEEEcCCCCEE
Q 021372          244 D------EFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-----------PRHIEFQVLADKYGNVV  291 (313)
Q Consensus       244 ~------el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-----------~~e~~v~v~~d~~G~vv  291 (313)
                      +      ........+...     ....+|+||+|.-           -..++|..+.++ |.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~-----~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~~~~  154 (285)
T PF14397_consen   96 DGSEINRDISALYAGLESL-----GGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-GEVE  154 (285)
T ss_pred             cCcccccchhHHHHHHHhc-----CCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-CeeE
Confidence            4      122222222111     1128999999974           345667777775 4443

>PLN02235 ATP citrate (pro-S)-lyase

Probab=98.41  E-value=2.8e-06  Score=80.24  Aligned_cols=106  Identities=15%  Similarity=0.275  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHC-----CCCCCCCCcccC-CCHHHHHHHHHH---hCCc-EEEeeccCCCCcc----EEEeCCHHHHHHHH
Q 021372          185 KSTARETMKNA-----GVPTVPGSDGLL-QSTEEAVKLADE---LGFP-VMIKATAGGGGRG----MRLAKEPDEFVKLL  250 (313)
Q Consensus       185 K~~~~~~l~~~-----Gip~p~~~~~~~-~~~~~~~~~~~~---lg~P-~VvKP~~g~gg~G----V~~v~~~~el~~~~  250 (313)
                      .+..+++|+++     |||+|.+.  .+ .+.+++.+++++   ++.| +||||..-.||||    |.+++|++|+.++.
T Consensus         8 EyqaK~ll~~~~~~~~gipvP~~~--v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a   85 (423)
T PLN02235          8 EYDSKRLLKEHLKRLAGIDLPIRS--AQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFV   85 (423)
T ss_pred             HHHHHHHHHHhhcccCCCCCCCCe--eccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHH
Confidence            46678889988     99999995  55 899999998888   7765 6999987776664    89999999999999


Q ss_pred             HHHHHHHH-----hcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          251 QQAKSEAA-----AAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       251 ~~~~~~~~-----~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      +++.....     .. .-..+|||++++-.+||-+.++.|.....+.+
T Consensus        86 ~~~Lg~~l~t~g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~~ii~  132 (423)
T PLN02235         86 KERLGKEVEMGGCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGCSISF  132 (423)
T ss_pred             HHHhCCceEecCCCc-cEeEEEEEecCCCcceEEEEEEEecCCCEEEE
Confidence            98875431     11 12478999999988999999999986666443

>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6

Probab=98.35  E-value=1.1e-06  Score=73.84  Aligned_cols=84  Identities=19%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             CCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCH-HHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--C
Q 021372          199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP-DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--P  275 (313)
Q Consensus       199 ~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~-~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~  275 (313)
                      +|+|+  +..+.+++.++.++.+. +|+||..|.||+||+++... ..+.+.++.+...     +..++++|+|++.  .
T Consensus        12 ~P~T~--vs~~~~~i~~f~~~~~~-~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~-----~~~~~mvQ~flp~i~~   83 (173)
T PF02955_consen   12 IPPTL--VSRDKEEIRAFIEEHGD-IVLKPLDGMGGRGVFRISRDDPNLNSILETLTKN-----GERPVMVQPFLPEIKE   83 (173)
T ss_dssp             S--EE--EES-HHHHHHHHHHHSS-EEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTT-----TTS-EEEEE--GGGGG
T ss_pred             CcCEE--EECCHHHHHHHHHHCCC-EEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhc-----CCccEEEEeccccccC
Confidence            47774  77789999999999988 99999999999999998764 4455555544322     2357999999997  3


Q ss_pred             cEEEEEEEEcCCCCEEEE
Q 021372          276 RHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       276 ~e~~v~v~~d~~G~vv~~  293 (313)
                      -|.++-++   +|+.++.
T Consensus        84 GDkRii~~---nG~~~~a   98 (173)
T PF02955_consen   84 GDKRIILF---NGEPSHA   98 (173)
T ss_dssp             -EEEEEEE---TTEE-SE
T ss_pred             CCEEEEEE---CCEEhHH
Confidence            36777666   3444443

3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=98.24  E-value=1.1e-05  Score=61.14  Aligned_cols=94  Identities=17%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcC-C-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVRVIRTAHEMG-I-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G-~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +||||+|+|..-..++.++++.. + ++++.-  .+.-   .......+.+       +..+.+.++++|+++++|.|++
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aP--GN~G---~~~~~~~~~~-------~~~d~~~l~~~a~~~~idlvvv   68 (100)
T PF02844_consen    1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAP--GNPG---TAELGKNVPI-------DITDPEELADFAKENKIDLVVV   68 (100)
T ss_dssp             EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE----TT---GGGTSEEE-S--------TT-HHHHHHHHHHTTESEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeC--CCHH---HHhhceecCC-------CCCCHHHHHHHHHHcCCCEEEE
Confidence            58999999988788888887753 2 333332  2221   1112223323       2467899999999999999998


Q ss_pred             ccCcCccc---HHHHHHHHHcCCceeCCCHHHHHH
Q 021372          150 GYGFLAEN---AVFVEMCREHGINFIGPNPDSIRI  181 (313)
Q Consensus       150 ~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~  181 (313)
                      +.    |.   .-+.+.|++.|++++||+.++..+
T Consensus        69 GP----E~pL~~Gl~D~l~~~gi~vfGP~k~aA~L   99 (100)
T PF02844_consen   69 GP----EAPLVAGLADALRAAGIPVFGPSKEAARL   99 (100)
T ss_dssp             SS----HHHHHTTHHHHHHHTT-CEES--HHHHHH
T ss_pred             CC----hHHHHHHHHHHHHHCCCcEECcCHHHHhc
Confidence            76    43   246788999999999999887653

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp

Probab=98.11  E-value=4.9e-05  Score=68.34  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=82.4

Q ss_pred             HHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-CC--CCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeC
Q 021372          165 REHGINFIGPNPDSIRIMGDKSTARETMKNAG-VP--TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK  241 (313)
Q Consensus       165 ~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G-ip--~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~  241 (313)
                      +..|++++.+      ...||+.+++.|.+.. +.  .|+|  ....+.+++.+++++.+ -++|||..|+.|+||.++.
T Consensus         5 ~~~~i~~~n~------~~~~Kw~v~~~L~~~~~l~~~LP~T--~~~~~~~~l~~~L~~y~-~vylKP~~Gs~G~gI~ri~   75 (262)
T PF14398_consen    5 KQKGIPFFNP------GFFDKWEVYKALSRDPELRPYLPET--ELLTSFEDLREMLNKYK-SVYLKPDNGSKGKGIIRIE   75 (262)
T ss_pred             hcCCCEEeCC------CCCCHHHHHHHHHcCCcchhhCCCc--eEcCCHHHHHHHHHHCC-EEEEEeCCCCCCccEEEEE
Confidence            4678999843      4689999999999854 34  6787  37888899999988876 6999999999999987652


Q ss_pred             ----------------------CHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC-----C-CcEEEEEEEEcCCCCE
Q 021372          242 ----------------------EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-----N-PRHIEFQVLADKYGNV  290 (313)
Q Consensus       242 ----------------------~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~-----G-~~e~~v~v~~d~~G~v  290 (313)
                                            +.+++...+....       ....+|||+.|+     | +-++.|.+-.+++|+-
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W  145 (262)
T PF14398_consen   76 KKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELL-------GKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKW  145 (262)
T ss_pred             EeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhc-------CCCcEEEeCCccccccCCCeEEEEEEEEECCCCCE
Confidence                                  3455555555432       346999999997     3 4566677777777744

>PF06849 DUF1246: Protein of unknown function (DUF1246); InterPro: IPR010672 The last two steps of de novo purine biosynthesis are: i) conversion of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate (FAICAR) ii) conversion of FAICAR to inosine5'-monophopsphate (IMP) In bacteria and eukaryotes, these steps are catalysed by the well-characterised bifunctional enzyme PurH []

Probab=98.06  E-value=1.7e-05  Score=61.69  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=72.0

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      |..+|+. +++++++-|++.|++++++..... ..-....++|+.+.++.-   .+..+ +.+.+..++  -++|+..++
T Consensus         1 I~tlaSH-SALqIl~GAk~EGFrT~~ic~~~r~~~Y~~f~~iDe~i~~d~f---~di~~-~~~q~~L~~--~N~I~VPhg   73 (124)
T PF06849_consen    1 IATLASH-SALQILDGAKDEGFRTIAICQKGREKFYRRFPFIDEVIVLDSF---SDILS-EEVQEKLRE--MNAIFVPHG   73 (124)
T ss_dssp             EEEESST-THHHHHHHHHHTT--EEEEEETTCHHHHHTTTT-SEEEEESSC---GHCCS-HHHHHHHHH--TTEEE--BT
T ss_pred             Ceeeech-HHHHHhhhHHHcCCcEEEEECCCCcchhhhcCcCcEEEEeCCH---HHHHh-HHHHHHHHH--CCeEEecCC
Confidence            3455544 589999999999999998875432 223334478998877411   11111 244444433  467777777


Q ss_pred             cCcccHHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCC
Q 021372          153 FLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS  203 (313)
Q Consensus       153 ~~~e~~~~~~~l~~-~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~  203 (313)
                      ++.+..-. +.++. ..+|++| +...++.-.|...-+++|+++|||.|+.+
T Consensus        74 Sfv~Y~G~-d~ie~~~~vP~FG-NR~lLrwEseR~~~~~lL~~AgI~~P~~~  123 (124)
T PF06849_consen   74 SFVAYVGY-DRIENEFKVPIFG-NRNLLRWESERDKERNLLEKAGIPMPRKF  123 (124)
T ss_dssp             THHHHH-H-HHHHHT-SS-EES--CCGGHCCCSHHHHHHHHHHTT-BB--BE
T ss_pred             CeeEeecH-HHHhhcCCCCeec-ChHHHHhhhhhhhHHHHHHHcCCCCCccC
Confidence            66555433 33445 8999997 56777777799999999999999999853

Archaea do not appear to posses PurH, however, and perform these reactions by a different mecahnism []. In archaea, step i) is catalysed by the well-conserved PurP protein, while step ii) is catalysed by the PurO enzyme in some (though not all) species [, ]. This entry represents the N-terminal domain of PurP. Its function is not known, though it is almost always found in association with IPR009720 from INTERPRO.; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0006188 IMP biosynthetic process; PDB: 2PBZ_C 2R85_B 2R87_E 2R84_A 2R86_A 2R7L_A 2R7N_A 2R7K_A 2R7M_A.

>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase

Probab=97.72  E-value=8.5e-05  Score=67.82  Aligned_cols=102  Identities=18%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             CCceeCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCCcccCC-CHHHHHHHHH--HhCCcEEEeeccCC---CC
Q 021372          168 GINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQ-STEEAVKLAD--ELGFPVMIKATAGG---GG  234 (313)
Q Consensus       168 gi~~~g~~~~~i~~~~DK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~lg~P~VvKP~~g~---gg  234 (313)
                      .+.++ .+.++++.+.|+..+.+++++.       .+.+|++.  .+. +.+++.+..+  .+.||+|+||....   .+
T Consensus        78 ~v~vi-Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~S  154 (307)
T PF05770_consen   78 EVVVI-DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFV--VINSDAESLPELLKEAGLKFPLICKPLVACGSADS  154 (307)
T ss_dssp             TSEEE-T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EE--EESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCC
T ss_pred             CeEEE-cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceE--EEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccc
Confidence            45555 7889999999999999988875       67888874  333 4445554443  56799999998755   45


Q ss_pred             ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEc
Q 021372          235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLAD  285 (313)
Q Consensus       235 ~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d  285 (313)
                      ..+.++.+.+.|.+.             ..++++||||+= +.-|-|.+++|
T Consensus       155 H~Maivf~~~gL~~L-------------~~P~VlQeFVNHggvLfKVyVvGd  193 (307)
T PF05770_consen  155 HKMAIVFNEEGLKDL-------------KPPCVLQEFVNHGGVLFKVYVVGD  193 (307)
T ss_dssp             CEEEEE-SGGGGTT---------------SSEEEEE----TTEEEEEEEETT
T ss_pred             eEEEEEECHHHHhhc-------------CCCEEEEEeecCCCEEEEEEEecC
Confidence            678899999998762             268999999973 57788888766

Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.

>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2

Probab=97.67  E-value=0.00049  Score=65.89  Aligned_cols=173  Identities=18%  Similarity=0.213  Sum_probs=99.1

Q ss_pred             ccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      ..+|.|+.--..     =..+.+.+.++|+++++++...      ..+.+...+.+       -.-++.+-+.+-...  
T Consensus       185 ~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d~~~------L~y~~g~L~~~-------~~~ID~VyRR~Vt~e--  249 (445)
T PF14403_consen  185 KPNIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICDPRD------LEYRDGRLYAG-------GRPIDAVYRRFVTSE--  249 (445)
T ss_pred             CCcEEEEecccCCccchHHHHHHHHHHcCCceEecChHH------ceecCCEEEEC-------CEeeehhhHhhhhHH--
Confidence            456778772222     2456688889999999985432      23344444332       111233333221110  


Q ss_pred             EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC-------------CCCCCcccCCC---
Q 021372          146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP-------------TVPGSDGLLQS---  209 (313)
Q Consensus       146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip-------------~p~~~~~~~~~---  209 (313)
                       +++   ...+...+.++...-.+.++|  +-....++||..+.=+-.+..-.             +|-|  ..++.   
T Consensus       250 -~l~---~~d~~~~li~Ay~~~av~~vg--sfrs~l~hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T--~~l~~~~~  321 (445)
T PF14403_consen  250 -LLE---RYDEVQPLIQAYRDGAVCMVG--SFRSQLLHNKIIFAILHDERTTAFLTAEERAFIRRHVPWT--RLLTAGRT  321 (445)
T ss_pred             -hhh---ccccchHHHHHHhcCCeEEec--chhhhhhhhhHHHHHhcChhhcccCCHHHHHHHHHhCCce--EEEcCccc
Confidence             011   111334566666666666663  34456677777664332222111             2333  23333   


Q ss_pred             -----HHHHHHHHHHhCCcEEEeeccCCCCccEEE--eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC
Q 021372          210 -----TEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN  274 (313)
Q Consensus       210 -----~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~--v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G  274 (313)
                           .-++.+++..-.--+|+||..+.||+||++  =.++++++++++++..        .++|+|||++-
T Consensus       322 ~~~g~~~dL~~~~~a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~--------~~yilQe~v~~  385 (445)
T PF14403_consen  322 TYQGEDVDLVEFAIANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAR--------EPYILQEYVRP  385 (445)
T ss_pred             cccccchhHHHHHHhchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhc--------CCcEEEEEecC
Confidence                 334444444444478999999999999998  3578899998888653        69999999987

>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp

Probab=97.19  E-value=0.0037  Score=55.42  Aligned_cols=111  Identities=15%  Similarity=0.169  Sum_probs=70.9

Q ss_pred             HHHHHhCCHHHHHHHHHHCC--CCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHH
Q 021372          177 DSIRIMGDKSTARETMKNAG--VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAK  254 (313)
Q Consensus       177 ~~i~~~~DK~~~~~~l~~~G--ip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~  254 (313)
                      .....+.||+..|+.+++.+  ...||.+ ...++.+++.  ...+.-++||||..|+|+..|....+..+...+...+.
T Consensus        13 ~~~~~~~DK~~VR~yv~~~~g~~~l~pll-~v~~~~~~i~--~~~Lp~~fViK~nhgsg~~~i~~dk~~~d~~~~~~~~~   89 (239)
T PF14305_consen   13 PLFTKLADKYAVREYVEEKIGEEYLPPLL-GVYDNPDDID--FDSLPDKFVIKPNHGSGSNIIVRDKSKLDIEEAKKKLN   89 (239)
T ss_pred             ccceecchHHHHHHHHHHhCCCceECcee-ecCCChhhhh--hhcCCCCEEEEEecCCCcEEEEeCCcccCHHHHHHHHH
Confidence            34567899999999999986  3445554 4667777663  24566789999999999888877654333333332222


Q ss_pred             HHHHhcCC-----------CCcEEEeeccCC--C---cEEEEEEEEcCCCCEEEE
Q 021372          255 SEAAAAFG-----------NDGVYLEKYVQN--P---RHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       255 ~~~~~~~~-----------~~~vlvEe~I~G--~---~e~~v~v~~d~~G~vv~~  293 (313)
                      ......+.           ...+++|++|..  +   .+|-+-++   +|++..+
T Consensus        90 ~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF---~G~~~~i  141 (239)
T PF14305_consen   90 RWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCF---NGKPKFI  141 (239)
T ss_pred             HHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEE---CCEEEEE
Confidence            11100101           247999999976  2   57887777   4454444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.98  E-value=0.0055  Score=57.85  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhhc---CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~a---d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      |++|||+|+|.+|..++..|.+.| .+|++.+.+.+.........   -+...+|       -.+.+++.+++++.  |+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD-------~~d~~al~~li~~~--d~   71 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD-------AADVDALVALIKDF--DL   71 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec-------ccChHHHHHHHhcC--CE
Confidence            578999999999999999998988 89999876654433322222   2233343       45678888888776  88


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      |+...... -+..+.+++.+.|++++-.    ...-.+.+...+.++++|+-....
T Consensus        72 VIn~~p~~-~~~~i~ka~i~~gv~yvDt----s~~~~~~~~~~~~a~~Agit~v~~  122 (389)
T COG1748          72 VINAAPPF-VDLTILKACIKTGVDYVDT----SYYEEPPWKLDEEAKKAGITAVLG  122 (389)
T ss_pred             EEEeCCch-hhHHHHHHHHHhCCCEEEc----ccCCchhhhhhHHHHHcCeEEEcc
Confidence            88654222 2346777888999988621    111222477889999999776655

>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria

Probab=96.81  E-value=0.017  Score=52.75  Aligned_cols=94  Identities=24%  Similarity=0.324  Sum_probs=74.1

Q ss_pred             CCCCCcccCCCHHHHHHHHHHh--CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCc
Q 021372          199 TVPGSDGLLQSTEEAVKLADEL--GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR  276 (313)
Q Consensus       199 ~p~~~~~~~~~~~~~~~~~~~l--g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~  276 (313)
                      +-+.|  .+.+.+|+..++..+  +.|+=+||..+.||+|..++.+.++|+.++..+-.....   ...+++|+-+....
T Consensus       114 vL~G~--tvFs~~DA~~A~~~LL~~G~VRlKp~~a~gG~GQ~vv~~~~~Ld~~L~~~~~~~l~---~~GlVLE~~L~~~~  188 (355)
T PF11379_consen  114 VLPGY--TVFSREDARRAARRLLRDGPVRLKPVHATGGRGQQVVADADELDAALAALDDAELA---RHGLVLEEDLEEVV  188 (355)
T ss_pred             ccCCc--cccCHHHHHHHHHHHhccCCeeeccCcccCCCCceEecCHHHHHHHHHcCCHHHHH---hCCEEEecccCCCc
Confidence            34555  788899998887765  579999999999999999999999999999876443221   36799999999988


Q ss_pred             EEEEEEEEcCCCCEEEEeeccc
Q 021372          277 HIEFQVLADKYGNVVHFGERDC  298 (313)
Q Consensus       277 e~~v~v~~d~~G~vv~~~~r~~  298 (313)
                      -|||.-+.- .|.++.+.+..+
T Consensus       189 T~SVGqv~v-~g~~~SY~GtQ~  209 (355)
T PF11379_consen  189 TYSVGQVRV-AGLVASYYGTQR  209 (355)
T ss_pred             eeeEEEEEE-CCEEEEEeeEee
Confidence            999988776 346666655443

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.66  E-value=0.02  Score=51.03  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |+++|||+||..-|+.+++.|.+.|+++++...+....  .... ...+..+      .+.+.+.+.++++++++++|+=
T Consensus         1 ~~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~--~~~~-~~~v~~G------~l~~~~~l~~~l~~~~i~~VID   71 (248)
T PRK08057          1 MMPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG--PADL-PGPVRVG------GFGGAEGLAAYLREEGIDLVID   71 (248)
T ss_pred             CCceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC--cccC-CceEEEC------CCCCHHHHHHHHHHCCCCEEEE
Confidence            56789999999999999999999999887654333222  1111 2222233      2337899999999999999984


Q ss_pred             c-cCcCccc-HHHHHHHHHcCCcee
Q 021372          150 G-YGFLAEN-AVFVEMCREHGINFI  172 (313)
Q Consensus       150 ~-~g~~~e~-~~~~~~l~~~gi~~~  172 (313)
                      . +.|-.+- ....+.+.+.|++++
T Consensus        72 ATHPfA~~is~~a~~ac~~~~ipyi   96 (248)
T PRK08057         72 ATHPYAAQISANAAAACRALGIPYL   96 (248)
T ss_pred             CCCccHHHHHHHHHHHHHHhCCcEE
Confidence            3 2222222 345677888888875

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=96.59  E-value=0.019  Score=51.35  Aligned_cols=94  Identities=15%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      ++|||+|+..-|+.+++.|.+.|++|++...+..............+..+       -.+.+.+.++++++++|+|+-..
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g-------~l~~~~l~~~l~~~~i~~VIDAt   73 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTG-------ALDPQELREFLKRHSIDILVDAT   73 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEEC-------CCCHHHHHHHHHhcCCCEEEEcC
Confidence            47999998445999999999999999887555432222121111223233       24567788999999999988432


Q ss_pred             CcCc-cc-HHHHHHHHHcCCcee
Q 021372          152 GFLA-EN-AVFVEMCREHGINFI  172 (313)
Q Consensus       152 g~~~-e~-~~~~~~l~~~gi~~~  172 (313)
                      -.+. +. ....+.+.+.|++++
T Consensus        74 HPfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        74 HPFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             CHHHHHHHHHHHHHHHHhCCcEE
Confidence            1111 11 245677788888875

This enzyme was found to be a monomer by gel filtration.

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.48  E-value=0.038  Score=48.77  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=78.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +++|||+|+..-++.+++.|...+..+++.........+....+...+ .       .+...+.+.++.+++++|.++-.
T Consensus         2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~-~-------G~l~~e~l~~~l~e~~i~llIDA   73 (257)
T COG2099           2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRV-G-------GFLGAEGLAAFLREEGIDLLIDA   73 (257)
T ss_pred             CceEEEEeccHHHHHHHHHhhccCccEEEEEcccccccchhccCCeee-c-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence            578999999999999999999999655555444333333333444222 3       36889999999999999999843


Q ss_pred             -cCcCccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC--CCCCCcccCCCHHHHHHHHHHhC
Q 021372          151 -YGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP--TVPGSDGLLQSTEEAVKLADELG  221 (313)
Q Consensus       151 -~g~~~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip--~p~~~~~~~~~~~~~~~~~~~lg  221 (313)
                       +.+-.+- ....+++++.|++++-                  +++-+..  -+++  ..+.|.+++.+.+.+.+
T Consensus        74 THPyAa~iS~Na~~aake~gipy~r------------------~eRP~~~~~gd~~--~~V~d~~ea~~~~~~~~  128 (257)
T COG2099          74 THPYAARISQNAARAAKETGIPYLR------------------LERPPWAPNGDNW--IEVADIEEAAEAAKQLG  128 (257)
T ss_pred             CChHHHHHHHHHHHHHHHhCCcEEE------------------EECCccccCCCce--EEecCHHHHHHHHhccC
Confidence             2111111 2345667777887751                  1111111  1333  37788888888777765

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.44  E-value=0.026  Score=44.14  Aligned_cols=98  Identities=27%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             cEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcch---hhhhhc------CceEEccCCCCCCCcCCHHHHHHH
Q 021372           72 EKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDA---LHVKLA------DESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        72 ~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~---~~~~~a------d~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      |+|.|+|.+.    .|..+++.+++.|++++.+++......   .+..+.      |-.+.+-      .......+++.
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~------~~~~~~~~v~~   74 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCV------PPDKVPEIVDE   74 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-------HHHHHHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEc------CHHHHHHHHHH
Confidence            5799999544    599999999999999999976553221   111111      1111110      01234556666


Q ss_pred             HHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHH
Q 021372          139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPD  177 (313)
Q Consensus       139 ~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~  177 (313)
                      +.+.++..++...+  .+...+.+.+++.|++++||+--
T Consensus        75 ~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vigp~C~  111 (116)
T PF13380_consen   75 AAALGVKAVWLQPG--AESEELIEAAREAGIRVIGPNCL  111 (116)
T ss_dssp             HHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEEESS-H
T ss_pred             HHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEEeCCcc
Confidence            66778888876654  34567888888999999987643

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.40  E-value=0.019  Score=51.94  Aligned_cols=71  Identities=13%  Similarity=0.016  Sum_probs=52.8

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++|||+| +|.+|-+.+..|.+.|++|+++|.-.+......... .+++.-       +..|.+.|.++..++++|+|+-
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~g-------Di~D~~~L~~vf~~~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEG-------DLLDRALLTAVFEENKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEe-------ccccHHHHHHHHHhcCCCEEEE
Confidence            4799999 788999999999999999999986544333222222 234422       3567888999999999999984

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.38  E-value=0.042  Score=50.58  Aligned_cols=118  Identities=19%  Similarity=0.259  Sum_probs=67.3

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +|||+| .|.+|.++++.|.+.|++|+++..+............+.+..       +..+.+.+.++++  ++|+|+-..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~-------Dl~d~~~l~~al~--g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG-------DLSLPETLPPSFK--GVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC-------CCCCHHHHHHHHC--CCCEEEECC
Confidence            799999 688999999999999999998865432211000111122221       2345556666553  588887542


Q ss_pred             CcCcc--------c----HHHHHHHHHcCCc-eeCCCH---H---HHHHhCCHHHHHHHHHHCCCCC
Q 021372          152 GFLAE--------N----AVFVEMCREHGIN-FIGPNP---D---SIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       152 g~~~e--------~----~~~~~~l~~~gi~-~~g~~~---~---~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      +....        +    ..+.+++.+.|+. ++..+.   +   .......|..+.+.+++.|++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~  139 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPY  139 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCe
Confidence            21111        1    2345666677763 221111   0   1122345778888888888765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.21  E-value=0.026  Score=52.30  Aligned_cols=158  Identities=19%  Similarity=0.127  Sum_probs=89.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|.|.+|...++-++.+|.+|++++...+......++ +|..+...      +....+.+.+    . +|+++-
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~------~~~~~~~~~~----~-~d~ii~  235 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS------DSDALEAVKE----I-ADAIID  235 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC------CchhhHHhHh----h-CcEEEE
Confidence            5789999999999999999999999999999888877777787 55554210      1111222222    2 899997


Q ss_pred             ccCcCcccHHHHHHHHHcCCc-eeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          150 GYGFLAENAVFVEMCREHGIN-FIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~-~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      +.+ ........+.+...|.- +.|...  ......-..+.-++++  +.+.-+......+.+++.+++.+-+    |||
T Consensus       236 tv~-~~~~~~~l~~l~~~G~~v~vG~~~--~~~~~~~~~~~li~~~--~~i~GS~~g~~~d~~e~l~f~~~g~----Ikp  306 (339)
T COG1064         236 TVG-PATLEPSLKALRRGGTLVLVGLPG--GGPIPLLPAFLLILKE--ISIVGSLVGTRADLEEALDFAAEGK----IKP  306 (339)
T ss_pred             CCC-hhhHHHHHHHHhcCCEEEEECCCC--CcccCCCCHHHhhhcC--eEEEEEecCCHHHHHHHHHHHHhCC----cee
Confidence            654 22234556667666643 344332  0001111122223333  3332221122234445555555544    444


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHH
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKS  255 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~  255 (313)
                      ...       .....+|+.++++++.+
T Consensus       307 ~i~-------e~~~l~~in~A~~~m~~  326 (339)
T COG1064         307 EIL-------ETIPLDEINEAYERMEK  326 (339)
T ss_pred             eEE-------eeECHHHHHHHHHHHHc
Confidence            321       34567778888887754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.17  E-value=0.021  Score=50.12  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=77.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh--hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~--~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |+++|+|.|..|+.+++.|.+.|+.|++++.++........  +....+..+       -.+.+.|.++ --.+.|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd-------~t~~~~L~~a-gi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGD-------ATDEDVLEEA-GIDDADAVVA   72 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEec-------CCCHHHHHhc-CCCcCCEEEE
Confidence            57999999999999999999999999999877665443222  333334222       2334444443 3356899887


Q ss_pred             ccCcCcccHHHHHHH-HHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH-HHHHHHHhCCcEEEe
Q 021372          150 GYGFLAENAVFVEMC-REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIK  227 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l-~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~-~~~~~~~lg~P~VvK  227 (313)
                      ..+....+..+..+. +..|++-.      +..+.|... .+.+++.|+..      .+..... ....++.+.+|-++-
T Consensus        73 ~t~~d~~N~i~~~la~~~~gv~~v------iar~~~~~~-~~~~~~~g~~~------ii~Pe~~~~~~l~~~i~~p~~~~  139 (225)
T COG0569          73 ATGNDEVNSVLALLALKEFGVPRV------IARARNPEH-EKVLEKLGADV------IISPEKLAAKRLARLIVTPGALD  139 (225)
T ss_pred             eeCCCHHHHHHHHHHHHhcCCCcE------EEEecCHHH-HHHHHHcCCcE------EECHHHHHHHHHHHHhcCCChhe
Confidence            654332333333333 23455443      345555544 45666777332      2222222 334445566675433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.14  E-value=0.018  Score=57.53  Aligned_cols=116  Identities=14%  Similarity=0.078  Sum_probs=67.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +..+++|+|.|..|+.+++.|++.|+++++++.|++........ +.....+      |..+ +++++.+.-.+.|+++.
T Consensus       416 ~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-g~~~i~G------D~~~-~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        416 ICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-GIRAVLG------NAAN-EEIMQLAHLDCARWLLL  487 (558)
T ss_pred             cCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-CCeEEEc------CCCC-HHHHHhcCccccCEEEE
Confidence            46889999999999999999999999999998776544333332 3333232      1233 34444455557887776


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ..+...++........+..     ++...+..+.|.. ..+.+++.|++.
T Consensus       488 ~~~~~~~~~~iv~~~~~~~-----~~~~iiar~~~~~-~~~~l~~~Gad~  531 (558)
T PRK10669        488 TIPNGYEAGEIVASAREKR-----PDIEIIARAHYDD-EVAYITERGANQ  531 (558)
T ss_pred             EcCChHHHHHHHHHHHHHC-----CCCeEEEEECCHH-HHHHHHHcCCCE
Confidence            5432222222222222221     2223333455554 445567888664

>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed

Probab=96.05  E-value=0.015  Score=52.98  Aligned_cols=66  Identities=18%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-------CcEEEEEEEEcCCCCEEEEee
Q 021372          223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-------PRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-------~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      -+|+||..++.|+|+.++++.+++.+.         .......++||+||+-       .-++++-++...--....+.-
T Consensus        67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~---------~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y  137 (292)
T PF03133_consen   67 LWIVKPSNGSRGRGIKLFNNLEQILRF---------SKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLY  137 (292)
T ss_dssp             -EEEEES-------EEEES-HHHHHCC---------HCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEE
T ss_pred             EEEEeccccCCCCCceecCCHHHHHHH---------hhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeec
Confidence            489999999999999999999888754         0113478999999973       346666666654324444433


Q ss_pred             cc
Q 021372          296 RD  297 (313)
Q Consensus       296 r~  297 (313)
                      ++
T Consensus       138 ~~  139 (292)
T PF03133_consen  138 KE  139 (292)
T ss_dssp             S-
T ss_pred             cC
Confidence            33

This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.

>PLN00016 RNA-binding protein; Provisional

Probab=96.05  E-value=0.052  Score=51.28  Aligned_cols=123  Identities=11%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             ccccccEEEEE----c-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-----h---hhc---CceEEccCCCCCCCcC
Q 021372           67 VTCRQEKILVA----N-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----V---KLA---DESVCIGEAPSSQSYL  130 (313)
Q Consensus        67 ~~~~~~~ILIi----g-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~---~~a---d~~~~v~~~~~~~~~~  130 (313)
                      ...|+++|||+    | .|.+|..+++.|.+.|++|++++.........     .   .+.   -+.+          ..
T Consensus        48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v----------~~  117 (378)
T PLN00016         48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTV----------WG  117 (378)
T ss_pred             cccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEE----------Ee
Confidence            34456889999    7 57789999999999999999987554321100     0   000   1111          12


Q ss_pred             CHHHHHHHHHhcCCCEEeeccCcCcc-cHHHHHHHHHcCCc-eeCCCHHHHHH---------------hCCHHHHHHHHH
Q 021372          131 LIPNVLSAAISRGCTMLHPGYGFLAE-NAVFVEMCREHGIN-FIGPNPDSIRI---------------MGDKSTARETMK  193 (313)
Q Consensus       131 ~~~~l~~~~~~~~id~vip~~g~~~e-~~~~~~~l~~~gi~-~~g~~~~~i~~---------------~~DK~~~~~~l~  193 (313)
                      |+..+.++....++|+|+-..+...+ ...+.+++.+.|+. ++..+...+..               ...|....++++
T Consensus       118 D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~sK~~~E~~l~  197 (378)
T PLN00016        118 DPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKAGHLEVEAYLQ  197 (378)
T ss_pred             cHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcchHHHHHHHHH
Confidence            33344444444678988854331111 13455666667763 33212111100               014777778888


Q ss_pred             HCCCCC
Q 021372          194 NAGVPT  199 (313)
Q Consensus       194 ~~Gip~  199 (313)
                      +.|+++
T Consensus       198 ~~~l~~  203 (378)
T PLN00016        198 KLGVNW  203 (378)
T ss_pred             HcCCCe
Confidence            888764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.96  E-value=0.12  Score=45.18  Aligned_cols=117  Identities=18%  Similarity=0.251  Sum_probs=76.7

Q ss_pred             EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |+|+| .|.+|..++++|.+.|++|.++..+...... ... ...+.+..       ++.+.+.|.++.+  ++|.|+..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~-------d~~~~~~l~~al~--g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEA-------DYDDPESLVAALK--GVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES--------TT-HHHHHHHHT--TCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeec-------ccCCHHHHHHHHc--CCceEEee
Confidence            78999 5889999999999999999999766532221 111 12233322       3667888888774  79988876


Q ss_pred             cCcCccc-----HHHHHHHHHcCCceeC-----CCH-------HHHHHhCCHHHHHHHHHHCCCCC
Q 021372          151 YGFLAEN-----AVFVEMCREHGINFIG-----PNP-------DSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~e~-----~~~~~~l~~~gi~~~g-----~~~-------~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+...+.     ..+.+++.+.|++.+-     ...       ........|....+.+++.|++.
T Consensus        72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~  137 (233)
T PF05368_consen   72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPY  137 (233)
T ss_dssp             SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEB
T ss_pred             cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccc
Confidence            5433121     3466777777876542     111       13455678889999999998775

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.84  E-value=0.015  Score=58.46  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ..+|+|+|.|..|+.+++.|++.|+++++++.|++............+ .++      ..+ ..+++.+.-.+.|+++..
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~GD------at~-~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVY-YGD------ATQ-LELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEE-Eee------CCC-HHHHHhcCCccCCEEEEE
Confidence            578999999999999999999999999999888765544333322333 331      122 345555555568888876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+...++.......++..     |+...+..++|.... +.|++.|...
T Consensus       472 ~~d~~~n~~i~~~~r~~~-----p~~~IiaRa~~~~~~-~~L~~~Ga~~  514 (601)
T PRK03659        472 CNEPEDTMKIVELCQQHF-----PHLHILARARGRVEA-HELLQAGVTQ  514 (601)
T ss_pred             eCCHHHHHHHHHHHHHHC-----CCCeEEEEeCCHHHH-HHHHhCCCCE
Confidence            542222223333333321     233333445555443 3445556553

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.79  E-value=0.048  Score=47.16  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|||+|+|..|.+-++.|.+.|.+|++++++..
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~   43 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE   43 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            57899999999999999999999999999976543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.67  E-value=0.11  Score=46.42  Aligned_cols=94  Identities=21%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |+|||+||..-|+.+++.|.+.|+ |++-............. ....+.++      .+.+.+.+.++++++++++|+=.
T Consensus         1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G------~lg~~~~l~~~l~~~~i~~vIDA   73 (249)
T PF02571_consen    1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVG------RLGDEEGLAEFLRENGIDAVIDA   73 (249)
T ss_pred             CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEEC------CCCCHHHHHHHHHhCCCcEEEEC
Confidence            689999999999999999999998 54322222211111111 11123333      23388999999999999999843


Q ss_pred             -cCcCccc-HHHHHHHHHcCCcee
Q 021372          151 -YGFLAEN-AVFVEMCREHGINFI  172 (313)
Q Consensus       151 -~g~~~e~-~~~~~~l~~~gi~~~  172 (313)
                       +.|-.+. ....+++.+.|++++
T Consensus        74 THPfA~~is~na~~a~~~~~ipyl   97 (249)
T PF02571_consen   74 THPFAAEISQNAIEACRELGIPYL   97 (249)
T ss_pred             CCchHHHHHHHHHHHHhhcCcceE
Confidence             2222121 345677788888775

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=95.56  E-value=0.068  Score=49.26  Aligned_cols=112  Identities=22%  Similarity=0.321  Sum_probs=75.9

Q ss_pred             HHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC-CcEEEeeccCCCCc-----------cEEEeCCHHHHH
Q 021372          180 RIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKATAGGGGR-----------GMRLAKEPDEFV  247 (313)
Q Consensus       180 ~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg-~P~VvKP~~g~gg~-----------GV~~v~~~~el~  247 (313)
                      .+...-+...++|.++|+.+|+.|  ...++|++.+.++++| --+|||...-.||+           ||++|.+++|.+
T Consensus        22 ~L~~hey~~~~ll~~~Gv~vp~g~--vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak   99 (434)
T KOG2799|consen   22 SLGIHEYRSAALLRKYGINVPLGY--VAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAK   99 (434)
T ss_pred             hhhHHHHHHHHHHHHcCCCCCCCc--ccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHH
Confidence            334455666899999999999997  8999999999999997 35999997554444           599999999999


Q ss_pred             HHHHHHHHHHH----h---cCCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEE
Q 021372          248 KLLQQAKSEAA----A---AFGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHF  293 (313)
Q Consensus       248 ~~~~~~~~~~~----~---~~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~  293 (313)
                      +...++.....    .   ...-..|+|=+-..+..|+.+.++-|.  +|+++..
T Consensus       100 ~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIa  154 (434)
T KOG2799|consen  100 AVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIA  154 (434)
T ss_pred             HHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEE
Confidence            88877753210    0   000123444444444466666666654  3444443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.52  E-value=0.045  Score=42.27  Aligned_cols=110  Identities=17%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCc
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGF  153 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~  153 (313)
                      |+|+|.|..|+.+++.|++.+++|++++.++.........-...++ +      +..+.+.+.+ +.-.+.+.++...+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~-g------d~~~~~~l~~-a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIY-G------DATDPEVLER-AGIEKADAVVILTDD   72 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEE-S-------TTSHHHHHH-TTGGCESEEEEESSS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccccc-c------cchhhhHHhh-cCccccCEEEEccCC
Confidence            6899999999999999999888999998776543332222233332 2      2344444444 344568888866542


Q ss_pred             CcccHHHHHHHHHcC--CceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          154 LAENAVFVEMCREHG--INFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       154 ~~e~~~~~~~l~~~g--i~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ..++......+++.+  .+++       ..+.|... .+.|++.|+..
T Consensus        73 d~~n~~~~~~~r~~~~~~~ii-------~~~~~~~~-~~~l~~~g~d~  112 (116)
T PF02254_consen   73 DEENLLIALLARELNPDIRII-------ARVNDPEN-AELLRQAGADH  112 (116)
T ss_dssp             HHHHHHHHHHHHHHTTTSEEE-------EEESSHHH-HHHHHHTT-SE
T ss_pred             HHHHHHHHHHHHHHCCCCeEE-------EEECCHHH-HHHHHHCCcCE
Confidence            223333444444321  2222       23333333 55557777653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.50  E-value=0.097  Score=48.11  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=88.5

Q ss_pred             HhcCCCEEeeccC--cCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHH----HHHHCC---CCCCCCCcccC
Q 021372          140 ISRGCTMLHPGYG--FLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARE----TMKNAG---VPTVPGSDGLL  207 (313)
Q Consensus       140 ~~~~id~vip~~g--~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~----~l~~~G---ip~p~~~~~~~  207 (313)
                      +....|+|+....  .+.++   -.+.-.+...||+.+ ++...+-++.||-..+.    +....|   +|..+..  ..
T Consensus       152 RsfkPdfVlirqhA~~mA~~~d~rslvig~qyagiP~v-NSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt--~y  228 (488)
T KOG3895|consen  152 RSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYAGIPSV-NSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQT--FY  228 (488)
T ss_pred             eeccCCEEEEcccchhhccccchHHHHHHHHhcCCccc-chhHHHHHhccchHHHHHHHHHHHhcCccccccceee--ec
Confidence            5567888887643  22222   344555677899998 89999999999876544    344566   5544431  22


Q ss_pred             CCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372          208 QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD  285 (313)
Q Consensus       208 ~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d  285 (313)
                      -+-.+   ....-.||+|||--.+..|.|=.+|+|.+|+.+...-+.-.      +-..-+|.||+-..++.++-++.
T Consensus       229 PnHK~---m~s~~tyPvVVkvghahsGmGKiKV~Nh~dfqDi~svval~------~Tyat~epFiDaKYDiriQKIG~  297 (488)
T KOG3895|consen  229 PNHKE---MLSQPTYPVVVKVGHAHSGMGKIKVENHEDFQDIASVVALT------KTYATAEPFIDAKYDIRIQKIGH  297 (488)
T ss_pred             CCchh---hccCCCCcEEEEecccccccceeeecchhhhHhHHHHHHHH------hhhhhccccccccceeehhhhhh
Confidence            22111   22233599999999999999999999999887754433211      14567889998866777776655

>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6

Probab=95.47  E-value=0.0025  Score=50.03  Aligned_cols=88  Identities=17%  Similarity=0.181  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhh-----hh--cC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec-cCc
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHV-----KL--AD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG-YGF  153 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~-----~~--ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~-~g~  153 (313)
                      |..+++++.+.+|+|+.++-+.+......     ..  .+ ................    ........+|+|||. +|.
T Consensus        21 a~~v~~~L~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~DvvFp~lHG~   96 (117)
T PF01820_consen   21 ARNVYEALDKEKYEVIPIYIDKDGRWYLGEGPEEYLDNDDDEEFSFKPLPEISASLI----EKNEQKLEVDVVFPVLHGP   96 (117)
T ss_dssp             HHHHHHHSHTTTEEEEEEEETTTSCEEEEHHHCSHHHTTTCCCHEESSSCCEEEEET----TESTTCTTCSEEEEECCST
T ss_pred             HHHHHHHHhhhcceEEEEeecCCCCEEEcccchhhcccCchhhcccccccccccccc----ccccccccCCEEEEeccCC
Confidence            88999999999999998876654311100     00  00 0000100000000000    000004679999998 688


Q ss_pred             CcccHHHHHHHHHcCCceeCC
Q 021372          154 LAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       154 ~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      ..|+..+..+|+-+++|+.|+
T Consensus        97 ~GEDG~iQglle~~~iPYvG~  117 (117)
T PF01820_consen   97 NGEDGTIQGLLELLGIPYVGC  117 (117)
T ss_dssp             TTSSSHHHHHHHHTT-EBSSS
T ss_pred             CCcccHHHHHHHHcCCCCcCC
Confidence            999999999999999999873

3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.46  E-value=0.098  Score=44.13  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||.|+| +|..|-++++.+.++|++|+.+..++......   .+..+ +     ..+..+++.+.+.+  .+.|+|+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i-~-----q~Difd~~~~a~~l--~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTI-L-----QKDIFDLTSLASDL--AGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---cccee-e-----cccccChhhhHhhh--cCCceEEEe
Confidence            5788888 67789999999999999999997665443321   11111 1     11234455665554  568999988


Q ss_pred             cCcC
Q 021372          151 YGFL  154 (313)
Q Consensus       151 ~g~~  154 (313)
                      +++.
T Consensus        70 ~~~~   73 (211)
T COG2910          70 FGAG   73 (211)
T ss_pred             ccCC
Confidence            7655

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.44  E-value=0.033  Score=56.28  Aligned_cols=116  Identities=19%  Similarity=0.187  Sum_probs=66.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|.|..|+.+++.|++.|+++++++.|++......+.....+ .++      ..+. .+++.+.-.+.|+++..
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~-~GD------at~~-~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVF-YGD------ATRM-DLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEE-EEe------CCCH-HHHHhcCCCcCCEEEEE
Confidence            578999999999999999999999999999887765444333333333 331      1223 34444444567888866


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV  200 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p  200 (313)
                      .+....+........++.     |+...+..+.|... .+.|++.|....
T Consensus       472 ~~d~~~n~~i~~~ar~~~-----p~~~iiaRa~d~~~-~~~L~~~Gad~v  515 (621)
T PRK03562        472 IDDPQTSLQLVELVKEHF-----PHLQIIARARDVDH-YIRLRQAGVEKP  515 (621)
T ss_pred             eCCHHHHHHHHHHHHHhC-----CCCeEEEEECCHHH-HHHHHHCCCCEE
Confidence            532222233333333321     22223334455433 334455565543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.41  E-value=0.054  Score=48.62  Aligned_cols=81  Identities=15%  Similarity=0.137  Sum_probs=53.6

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-hhhhhcCce----EEccCCCCCCCcCCHHHHHHHHHh
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADES----VCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~ad~~----~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      .++++++||+| ++.+|+.+++.+.+.|++++++..+.+... ....+.++.    ..+.  .+-.+..+.+.+.+..+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~--~DLs~~~~~~~l~~~l~~   80 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP--ADLSDPEALERLEDELKE   80 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE--CcCCChhHHHHHHHHHHh
Confidence            34578999999 566899999999999999999976655322 222333322    2232  222233456677766666


Q ss_pred             c--CCCEEeec
Q 021372          142 R--GCTMLHPG  150 (313)
Q Consensus       142 ~--~id~vip~  150 (313)
                      .  .||+++-.
T Consensus        81 ~~~~IdvLVNN   91 (265)
T COG0300          81 RGGPIDVLVNN   91 (265)
T ss_pred             cCCcccEEEEC
Confidence            5  79999864

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.28  E-value=0.19  Score=41.84  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      |+|+| .|.+|..+++.|.+.|++|+++..++.....   ...-.+ +.     .+..+.+.+.+...  ++|+|+...+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~-~~-----~d~~d~~~~~~al~--~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEI-IQ-----GDLFDPDSVKAALK--GADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEE-EE-----SCTTCHHHHHHHHT--TSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---cccccc-ce-----eeehhhhhhhhhhh--hcchhhhhhh
Confidence            78999 4889999999999999999999766543332   112112 21     12466777777775  7999987654


Q ss_pred             cCccc----HHHHHHHHHcCC
Q 021372          153 FLAEN----AVFVEMCREHGI  169 (313)
Q Consensus       153 ~~~e~----~~~~~~l~~~gi  169 (313)
                      ....+    ..+.+.+++.|+
T Consensus        70 ~~~~~~~~~~~~~~a~~~~~~   90 (183)
T PF13460_consen   70 PPPKDVDAAKNIIEAAKKAGV   90 (183)
T ss_dssp             STTTHHHHHHHHHHHHHHTTS
T ss_pred             hhccccccccccccccccccc
Confidence            22221    234555556665

...

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=95.17  E-value=0.16  Score=45.29  Aligned_cols=35  Identities=11%  Similarity=0.145  Sum_probs=32.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++|+|+|..+..+++-++.+||+|+++|+.+.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            57899999999999999999999999999986654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.096  Score=47.05  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |++++||+|+ |.+|..+++.+.+.|++|++++.+..
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~   39 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE   39 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4678999995 77899999999999999999865543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.15  E-value=0.22  Score=52.92  Aligned_cols=162  Identities=14%  Similarity=0.159  Sum_probs=95.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCc-------------EEEEecCCCcchhhhhhcCc-----eEEccCCCCCCCcCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIP-------------CVAVYSTIDKDALHVKLADE-----SVCIGEAPSSQSYLL  131 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~-------------vi~v~~~~~~~~~~~~~ad~-----~~~v~~~~~~~~~~~  131 (313)
                      +++|+|+|+|.+|..+++.|.+. +++             |.+.+.+....   ..++..     .+.++       +.+
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a---~~la~~~~~~~~v~lD-------v~D  638 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA---KETVEGIENAEAVQLD-------VSD  638 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH---HHHHHhcCCCceEEee-------cCC
Confidence            68999999999999999999775 444             55554332211   122221     12222       456


Q ss_pred             HHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH
Q 021372          132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE  211 (313)
Q Consensus       132 ~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~  211 (313)
                      .+.+.+++.+  +|+|+..... .-+..++..+.+.|.+++.-+..    ..+-..+.+.++++|+..-..+ .+--..+
T Consensus       639 ~e~L~~~v~~--~DaVIsalP~-~~H~~VAkaAieaGkHvv~eky~----~~e~~~L~e~Ak~AGV~~m~e~-GlDPGid  710 (1042)
T PLN02819        639 SESLLKYVSQ--VDVVISLLPA-SCHAVVAKACIELKKHLVTASYV----SEEMSALDSKAKEAGITILCEM-GLDPGID  710 (1042)
T ss_pred             HHHHHHhhcC--CCEEEECCCc-hhhHHHHHHHHHcCCCEEECcCC----HHHHHHHHHHHHHcCCEEEECC-ccCHHHH
Confidence            7788777654  9999976532 23467788888999998744311    2223456688889998877664 2222233


Q ss_pred             H--HHHHHHHh----CCcEEEeeccCCC--------CccEEEeCCHHHHHHHH
Q 021372          212 E--AVKLADEL----GFPVMIKATAGGG--------GRGMRLAKEPDEFVKLL  250 (313)
Q Consensus       212 ~--~~~~~~~l----g~P~VvKP~~g~g--------g~GV~~v~~~~el~~~~  250 (313)
                      .  +.+.+++.    |-...++...|+=        ..+-.+-.+++.+...+
T Consensus       711 ~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~  763 (1042)
T PLN02819        711 HMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAG  763 (1042)
T ss_pred             HHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHh
Confidence            3  33445444    6566666666652        22333445666554443

>PRK04148 hypothetical protein; Provisional

Probab=95.13  E-value=0.082  Score=42.42  Aligned_cols=80  Identities=15%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEcc---CC-----------CCCCCcCCHHHHH
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG---EA-----------PSSQSYLLIPNVL  136 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~---~~-----------~~~~~~~~~~~l~  136 (313)
                      .+++|++|.| .|..+++.|.++|++|+++|.++.............+.-+   |+           .-....+-...++
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~   95 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL   95 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH
Confidence            3689999998 7888999999999999999877653322222211111100   00           0001122345678


Q ss_pred             HHHHhcCCCEEeecc
Q 021372          137 SAAISRGCTMLHPGY  151 (313)
Q Consensus       137 ~~~~~~~id~vip~~  151 (313)
                      +++++.++|.++-..
T Consensus        96 ~la~~~~~~~~i~~l  110 (134)
T PRK04148         96 ELAKKINVPLIIKPL  110 (134)
T ss_pred             HHHHHcCCCEEEEcC
Confidence            888888888887653

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.095  Score=45.40  Aligned_cols=77  Identities=10%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |++++|+| .+.+|..+++.+.+.|++|++++.++........... ..+.++    ..+....+.+.+.+...++|.|+
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D----~~d~~~~~~~~~~~~~~~id~vi   76 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLD----MNDPASLDQLLQRLQGQRFDLLF   76 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcC----CCCHHHHHHHHHHhhcCCCCEEE
Confidence            36799999 6668999999999999999999766543221111111 122221    11222344555555445799988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      ...
T Consensus        77 ~~a   79 (225)
T PRK08177         77 VNA   79 (225)
T ss_pred             EcC
Confidence            654

>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]

Probab=95.02  E-value=0.22  Score=44.34  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCCCCc-----------cEEEeCCHHHHHHHHHH
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR-----------GMRLAKEPDEFVKLLQQ  252 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~gg~-----------GV~~v~~~~el~~~~~~  252 (313)
                      .+..+++|+++|+.+-.++  ..++..++.+.+..++-| +|+|..--.||+           ||++-.+.++..+..++
T Consensus        24 EfQSK~~l~k~Gv~vQ~F~--Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q  101 (412)
T KOG1447|consen   24 EFQSKEILSKNGVRVQRFF--VADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ  101 (412)
T ss_pred             HhhhHHHHHhcCeeEEEEE--EecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence            4567899999999999885  778888888888888755 899997544444           36777888888888887


Q ss_pred             HHHHHHhc-------CCCCcEEEeeccCCCcEEEEEEEEcC--CCCEEEE
Q 021372          253 AKSEAAAA-------FGNDGVYLEKYVQNPRHIEFQVLADK--YGNVVHF  293 (313)
Q Consensus       253 ~~~~~~~~-------~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~vv~~  293 (313)
                      +......-       ..-+.+++-|-++-.+|.-+.++.|.  +|+|+..
T Consensus       102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlva  151 (412)
T KOG1447|consen  102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVA  151 (412)
T ss_pred             HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEe
Confidence            75432110       01246888888888788888888876  6777654

>PRK05693 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.11  Score=46.58  Aligned_cols=34  Identities=12%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ||++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   35 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKA   35 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36899999 56789999999999999999886543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.94  E-value=0.17  Score=43.70  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|||+|+|..|...++.|.+.|.+|+++..+
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            689999999999999999999999999999643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.89  E-value=0.067  Score=38.57  Aligned_cols=59  Identities=14%  Similarity=0.059  Sum_probs=42.3

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ||+|+|+|.+|..++..++++|.+|+++...+...    ...+             ....+.+.+..++.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~----~~~~-------------~~~~~~~~~~l~~~gV~v~~   59 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL----PGFD-------------PDAAKILEEYLRKRGVEVHT   59 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS----TTSS-------------HHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh----hhcC-------------HHHHHHHHHHHHHCCCEEEe
Confidence            68999999999999999999999999997544321    1111             12244566677777777665

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.61  E-value=0.048  Score=41.62  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+|+|..|.+-++.|.+.|.+|+++.++.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            6899999999999999999999999999997654

>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments)

Probab=94.55  E-value=0.31  Score=41.40  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCHHHHHHhCCHHHHHH----HHHHCC---CCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHH
Q 021372          174 PNPDSIRIMGDKSTARE----TMKNAG---VPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF  246 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~~~----~l~~~G---ip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el  246 (313)
                      ++..++-++.||--...    +.+++|   +|..+..  ...+..+   ......||+|+|--.+.+|.|=.+++|..++
T Consensus         1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt--~ypnh~e---m~s~~~fPvVvKvG~~h~G~GKvkv~n~~~~   75 (203)
T PF02750_consen    1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQT--YYPNHRE---MLSAPRFPVVVKVGHAHAGMGKVKVDNQQDF   75 (203)
T ss_dssp             S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---E--EESSGGG---GCS-SSSSEEEEESS-STTTTEEEE-SHHHH
T ss_pred             CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceee--ecCChhh---hccCCCCCEEEEEccccCceeEEEEccHHHH
Confidence            35677788888875443    223443   5544432  2333333   2233579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc
Q 021372          247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD  285 (313)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d  285 (313)
                      .+...-+...      +.-+-+|.||+-..++.++-+++
T Consensus        76 qDi~sll~~~------~~Y~T~EPfId~kyDirvqkIG~  108 (203)
T PF02750_consen   76 QDIASLLAIT------KDYATTEPFIDAKYDIRVQKIGN  108 (203)
T ss_dssp             HHHHHHHHHH------TS-EEEEE---EEEEEEEEEETT
T ss_pred             HHHHHHHHhc------CceEEeeccccceeEEEEEEEcC
Confidence            8876665543      36789999998777777777755

The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.45  E-value=0.18  Score=47.60  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=29.3

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|||+|+ |.+|..+++.|.+.|++|+.++..
T Consensus        21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            478999995 889999999999999999998743

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.43  E-value=0.31  Score=46.37  Aligned_cols=74  Identities=19%  Similarity=0.095  Sum_probs=48.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh------hh-hhc-CceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL------HV-KLA-DESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~------~~-~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      ..++|||+| .|.+|..+++.|.+.|++|+++..+......      .. ... .+.+..       +..+.+.+.++++
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~-------Dl~d~~~l~~~~~  131 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFG-------DVTDADSLRKVLF  131 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEe-------eCCCHHHHHHHHH
Confidence            467899999 5779999999999999999988654422110      00 011 112222       2455677777776


Q ss_pred             hc--CCCEEeec
Q 021372          141 SR--GCTMLHPG  150 (313)
Q Consensus       141 ~~--~id~vip~  150 (313)
                      ..  ++|.|+..
T Consensus       132 ~~~~~~D~Vi~~  143 (390)
T PLN02657        132 SEGDPVDVVVSC  143 (390)
T ss_pred             HhCCCCcEEEEC
Confidence            54  69998854

>PRK08017 oxidoreductase; Provisional

Probab=94.37  E-value=0.2  Score=44.04  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=30.4

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |++++||+|+ |.+|..+++.+.+.|++|++++.+..
T Consensus         1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~   37 (256)
T PRK08017          1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPD   37 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999996 88999999999999999988865543

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.35  E-value=0.11  Score=41.88  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++|+|+|..+..+++-++.+|++|+++++.+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999987654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.30  E-value=0.14  Score=45.27  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=30.1

Q ss_pred             cccccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372           68 TCRQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        68 ~~~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ++..|++||+|++   .+|+.+++.|.+.|++|++.+.+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3346889999975   79999999999999999988543

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.21  Score=43.31  Aligned_cols=35  Identities=9%  Similarity=0.087  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| +|.+|..+++.+.+.|++|++++.++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            357899999 57789999999999999999986543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.22  E-value=0.2  Score=43.72  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=30.2

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++.++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467899999 67789999999999999999886553

>PRK12828 short chain dehydrogenase; Provisional

Probab=94.20  E-value=0.27  Score=42.48  Aligned_cols=36  Identities=6%  Similarity=0.014  Sum_probs=30.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++||+| +|.+|..+++.+.+.|++|++++.+..
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            357899999 577899999999999999999876543

>PRK06182 short chain dehydrogenase; Validated

Probab=94.16  E-value=0.25  Score=44.13  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++++|+| +|.+|..+++.+.+.|++|++++.+.+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~   38 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD   38 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999 567899999999999999998865543

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.15  E-value=0.26  Score=42.77  Aligned_cols=36  Identities=17%  Similarity=0.102  Sum_probs=30.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++++|||+| .|.+|..+++.+.+.|++|+++..++.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~   40 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE   40 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            457899999 577899999999999999988865543

>PRK08264 short chain dehydrogenase; Validated

Probab=94.12  E-value=0.31  Score=42.39  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=46.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM  146 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~  146 (313)
                      ..+++||+| +|.+|..+++.|.+.|+ +|++++.+......   .......+.     .+..+.+.+.++.... .+|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQ-----LDVTDPASVAAAAEAASDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEE-----ecCCCHHHHHHHHHhcCCCCE
Confidence            357899999 57789999999999999 88888654432211   112222121     1133455555555543 4898


Q ss_pred             EeeccC
Q 021372          147 LHPGYG  152 (313)
Q Consensus       147 vip~~g  152 (313)
                      |+-..+
T Consensus        77 vi~~ag   82 (238)
T PRK08264         77 LVNNAG   82 (238)
T ss_pred             EEECCC
Confidence            876544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.05  E-value=0.4  Score=39.60  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|||+|+|..|.+.++.|.+.|.+|+++++
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            58899999999999999999999999999953

>PLN02572 UDP-sulfoquinovose synthase

Probab=94.05  E-value=0.48  Score=45.94  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      +-++++|||+| +|.+|..+++.|.+.|++|++++
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d   78 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD   78 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence            33467899999 57799999999999999999986

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.04  E-value=0.31  Score=45.36  Aligned_cols=76  Identities=12%  Similarity=-0.065  Sum_probs=48.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh---hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH---VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~---~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|||+| +|.+|..+++.|.+.|++|++++.+.......   .........+     ..+..+.+.+.+++++.++|.
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----~~Dl~~~~~~~~~~~~~~~d~   78 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDH-----FGDIRDAAKLRKAIAEFKPEI   78 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEE-----EccCCCHHHHHHHHhhcCCCE
Confidence            47899999 57799999999999999999886543321111   0111111111     112345677778777778998


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      |+-.-
T Consensus        79 vih~A   83 (349)
T TIGR02622        79 VFHLA   83 (349)
T ss_pred             EEECC
Confidence            87543

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK12829 short chain dehydrogenase; Provisional

Probab=94.04  E-value=0.2  Score=44.21  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=30.2

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+.+++||+| .|.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~   45 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE   45 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468999999 56689999999999999998887544

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.02  E-value=0.32  Score=41.86  Aligned_cols=111  Identities=11%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|.|..|..+++.|.+.|++|++.+.+............ ...++          .+.+..    ..+|+++|.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g-~~~v~----------~~~l~~----~~~Dv~vp~   92 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG-ATVVA----------PEEIYS----VDADVFAPC   92 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC-CEEEc----------chhhcc----ccCCEEEec
Confidence            578999999999999999999999999977544322111111101 11121          122222    359999986


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      ..   +.....+.+++.+.+.+.-...  ..+.| ....+.|++.||.+.|-
T Consensus        93 A~---~~~I~~~~~~~l~~~~v~~~AN--~~~~~-~~~~~~L~~~Gi~~~Pd  138 (200)
T cd01075          93 AL---GGVINDDTIPQLKAKAIAGAAN--NQLAD-PRHGQMLHERGILYAPD  138 (200)
T ss_pred             cc---ccccCHHHHHHcCCCEEEECCc--CccCC-HhHHHHHHHCCCEEeCc
Confidence            32   1211122234444444311100  11222 56788999999999774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=93.99  E-value=0.33  Score=41.88  Aligned_cols=72  Identities=13%  Similarity=0.082  Sum_probs=50.9

Q ss_pred             EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      |||+| .|.+|..+++.|.+.|+.|+.+............... ..+..+       ..+.+.+.++....++|.|+-.-
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~d-------l~~~~~~~~~~~~~~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGD-------LTDKEQLEKLLEKANIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESE-------TTSHHHHHHHHHHHTESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEee-------ccccccccccccccCceEEEEee
Confidence            78999 7779999999999999998877655544432222112 233232       45678888888888999988654


Q ss_pred             C
Q 021372          152 G  152 (313)
Q Consensus       152 g  152 (313)
                      +
T Consensus        74 ~   74 (236)
T PF01370_consen   74 A   74 (236)
T ss_dssp             S
T ss_pred             c
Confidence            4

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06500 short chain dehydrogenase; Provisional

Probab=93.98  E-value=0.17  Score=44.26  Aligned_cols=35  Identities=11%  Similarity=0.111  Sum_probs=29.6

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            3457899999 5678999999999999999988644

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.94  E-value=0.25  Score=43.03  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEE-ecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAV-YST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v-~~~  103 (313)
                      |++++||+| .|.+|..+++.+.+.|++++++ ..+
T Consensus         4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~   39 (247)
T PRK05565          4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN   39 (247)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            467899999 5779999999999999999887 544

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.94  E-value=0.31  Score=42.26  Aligned_cols=34  Identities=15%  Similarity=0.151  Sum_probs=28.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ++++|||+| .|.+|..+++.|.+.|++++++...
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~   39 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRS   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            457899999 5778999999999999998775433

>PRK06483 dihydromonapterin reductase; Provisional

Probab=93.90  E-value=0.33  Score=42.23  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |.+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   37 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY   37 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch
Confidence            568899999 566899999999999999999875543

>PLN02240 UDP-glucose 4-epimerase

Probab=93.90  E-value=0.36  Score=44.75  Aligned_cols=77  Identities=13%  Similarity=-0.001  Sum_probs=47.5

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhh-------cCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL-------ADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~-------ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      ++.++|||+| .|.+|..+++.|.+.|++|++++........ ....       ......+     .-+..+.+.+.+++
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~D~~~~~~l~~~~   77 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH-----KVDLRDKEALEKVF   77 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEE-----ecCcCCHHHHHHHH
Confidence            3468999999 4789999999999999999988632211100 0000       0111111     11245566777777


Q ss_pred             HhcCCCEEeec
Q 021372          140 ISRGCTMLHPG  150 (313)
Q Consensus       140 ~~~~id~vip~  150 (313)
                      .+.++|.|+-.
T Consensus        78 ~~~~~d~vih~   88 (352)
T PLN02240         78 ASTRFDAVIHF   88 (352)
T ss_pred             HhCCCCEEEEc
Confidence            66689988764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.88  E-value=0.29  Score=42.82  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=29.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.++.
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999 567899999999999999998876543

>PRK07856 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.33  Score=42.74  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            358899999 56689999999999999999986544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=93.78  E-value=0.62  Score=41.89  Aligned_cols=113  Identities=11%  Similarity=0.015  Sum_probs=63.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||.|+|.|.+|..+++.+.+. ++++..+...................        -+.+.+.+     ..++|+|+-.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~--------~~~d~~~l-----~~~~DvVve~   68 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVR--------VVSSVDAL-----PQRPDLVVEC   68 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCe--------eeCCHHHh-----ccCCCEEEEC
Confidence            5899999999999999999886 67776655222111110111100010        12334443     3669999854


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP  198 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip  198 (313)
                      .+.. ....+...+.+.|.+++.-++.++........+.+.+++.|..
T Consensus        69 t~~~-~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         69 AGHA-ALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             CCHH-HHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            3211 2234455555779888754554432222234567788888875

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.77  E-value=0.51  Score=47.02  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.++|||+| .|.+|..+++.|.+.|++|+++..+..
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            357899999 577999999999999999998865543

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=93.73  E-value=0.16  Score=46.18  Aligned_cols=84  Identities=18%  Similarity=0.232  Sum_probs=54.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |||||+| .|.+|..+.+.+++.|++++.++..               .++       ..+.+.+.++..+.++|+|+-.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------~~d-------l~d~~~~~~~~~~~~pd~Vin~   58 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS---------------DLD-------LTDPEAVAKLLEAFKPDVVINC   58 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------CS--------TTSHHHHHHHHHHH--SEEEE-
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------hcC-------CCCHHHHHHHHHHhCCCeEecc
Confidence            6899999 6889999999999999998887322               121       3567788888888899999865


Q ss_pred             cCcCc-c----c------------HHHHHHHHHcCCceeCCCHH
Q 021372          151 YGFLA-E----N------------AVFVEMCREHGINFIGPNPD  177 (313)
Q Consensus       151 ~g~~~-e----~------------~~~~~~l~~~gi~~~g~~~~  177 (313)
                      -+... +    +            ..+++.+.+.|++++..+.+
T Consensus        59 aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd  102 (286)
T PF04321_consen   59 AAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD  102 (286)
T ss_dssp             -----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred             ceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence            32111 0    0            13456667777776544444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=93.69  E-value=0.36  Score=44.71  Aligned_cols=76  Identities=4%  Similarity=-0.165  Sum_probs=47.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhhc-------CceEEccCCCCCCCcCCHHHHHHHH
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA-------DESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~a-------d~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      ..++|||+| +|.+|..+++.|.+.|++|++++.......  ....+.       .....+     ..+..+.+.+.++.
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~   79 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLH-----YGDLSDASSLRRWL   79 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEE-----EecCCCHHHHHHHH
Confidence            357899999 577999999999999999998864332110  001111       111111     11245566777777


Q ss_pred             HhcCCCEEeec
Q 021372          140 ISRGCTMLHPG  150 (313)
Q Consensus       140 ~~~~id~vip~  150 (313)
                      +...+|.|+-.
T Consensus        80 ~~~~~d~Vih~   90 (340)
T PLN02653         80 DDIKPDEVYNL   90 (340)
T ss_pred             HHcCCCEEEEC
Confidence            77778988754

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.68  E-value=0.32  Score=43.02  Aligned_cols=35  Identities=11%  Similarity=-0.029  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~   36 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEA   36 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999 566899999999999999999865443

>PRK06194 hypothetical protein; Provisional

Probab=93.67  E-value=0.3  Score=43.88  Aligned_cols=34  Identities=9%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~   40 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ   40 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999 56789999999999999999886543

>PRK07236 hypothetical protein; Provisional

Probab=93.63  E-value=0.12  Score=48.88  Aligned_cols=36  Identities=6%  Similarity=-0.112  Sum_probs=32.4

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            456899999999999999999999999999997543

>PRK08219 short chain dehydrogenase; Provisional

Probab=93.60  E-value=0.34  Score=41.60  Aligned_cols=74  Identities=8%  Similarity=-0.012  Sum_probs=45.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcC-ceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id  145 (313)
                      |++++||+| +|.+|..+++.|.+. ++|++++.+........ .... +.+..       +..+.+.+.+++... ++|
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id   73 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPV-------DLTDPEAIAAAVEQLGRLD   73 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEec-------CCCCHHHHHHHHHhcCCCC
Confidence            467899999 566899999999888 99999865432211111 1111 12222       234456666666543 689


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      .|+-.-
T Consensus        74 ~vi~~a   79 (227)
T PRK08219         74 VLVHNA   79 (227)
T ss_pred             EEEECC
Confidence            888653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=93.57  E-value=0.35  Score=42.61  Aligned_cols=35  Identities=9%  Similarity=0.051  Sum_probs=30.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| +|.+|..+++.|.+.|++|++++.++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~   41 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ   41 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence            368899999 47789999999999999999886554

>PRK06953 short chain dehydrogenase; Provisional

Probab=93.50  E-value=0.22  Score=42.95  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~   35 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDA   35 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCH
Confidence            36789999 66689999999999999999986543

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=93.50  E-value=0.46  Score=41.60  Aligned_cols=35  Identities=17%  Similarity=0.141  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|||+|+|..|.+=++.|.+.|.+|+++.+...
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46899999999999989999999999999976543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=93.47  E-value=0.82  Score=41.29  Aligned_cols=142  Identities=13%  Similarity=0.078  Sum_probs=78.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .+.||.|+|.|.+|..+++.+.+.  ++++..+. +++... ...++...- ..     ..+.+.+.++     ..+|+|
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~-dr~~~~-a~~~a~~~g-~~-----~~~~~~eell-----~~~D~V   71 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVA-VRDPQR-HADFIWGLR-RP-----PPVVPLDQLA-----THADIV   71 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEE-CCCHHH-HHHHHHhcC-CC-----cccCCHHHHh-----cCCCEE
Confidence            357899999999999999999873  78877554 322211 122222210 00     0123455553     248999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC--CCCCCcccCCCHHHHHHHHHHhCCcEE
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP--TVPGSDGLLQSTEEAVKLADELGFPVM  225 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip--~p~~~~~~~~~~~~~~~~~~~lg~P~V  225 (313)
                      +..... .....+...+.+.|..++..+..++.   +-..+.+.+++.|.+  +|..+   ..-.+-+  ...++|-+-.
T Consensus        72 vi~tp~-~~h~e~~~~aL~aGk~Vi~~s~gal~---~~~~L~~~A~~~g~~l~v~sGa---~~g~d~l--~~g~iG~~~~  142 (271)
T PRK13302         72 VEAAPA-SVLRAIVEPVLAAGKKAIVLSVGALL---RNEDLIDLARQNGGQIIVPTGA---LLGLDAV--TAAAEGTIHS  142 (271)
T ss_pred             EECCCc-HHHHHHHHHHHHcCCcEEEecchhHH---hHHHHHHHHHHcCCEEEEcchH---HHhHHHH--HHHHcCCceE
Confidence            876421 12234444444678877744433332   346778888998877  45443   2222222  2235676654


Q ss_pred             -----EeeccCCC
Q 021372          226 -----IKATAGGG  233 (313)
Q Consensus       226 -----vKP~~g~g  233 (313)
                           -||..+..
T Consensus       143 v~~~trkpp~~~~  155 (271)
T PRK13302        143 VKMITRKPPDGLK  155 (271)
T ss_pred             EEEEEecCchHhc
Confidence                 46655553

>PRK06398 aldose dehydrogenase; Validated

Probab=93.47  E-value=0.5  Score=41.89  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=28.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +.+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            358899999 5568999999999999999988644

>PRK08643 acetoin reductase; Validated

Probab=93.44  E-value=0.33  Score=42.71  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~   36 (256)
T PRK08643          1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE   36 (256)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999 56689999999999999999886543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.44  E-value=0.28  Score=47.36  Aligned_cols=35  Identities=9%  Similarity=0.200  Sum_probs=30.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ++|+|+|.|..|..+++.|.+.|+++++++.++..
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~   35 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEER   35 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            37999999999999999999999999999765543

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.43  E-value=0.45  Score=41.97  Aligned_cols=35  Identities=11%  Similarity=0.051  Sum_probs=29.8

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3588999995 7789999999999999999886544

>PRK09135 pteridine reductase; Provisional

Probab=93.40  E-value=0.48  Score=41.25  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +.+++||+| +|.+|..+++.+.+.|++|++++..
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            357899999 5668999999999999999998643

>PRK07774 short chain dehydrogenase; Provisional

Probab=93.39  E-value=0.43  Score=41.71  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999995 7799999999999999999987543

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=93.37  E-value=1.3  Score=39.17  Aligned_cols=118  Identities=18%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++|||+| .|.+|..+++.|.+.|++|.++..++.......  ....+..      .++.+.+.+....  .+++.++..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~------~d~~~~~~l~~a~--~G~~~~~~i   70 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVL------GDLRDPKSLVAGA--KGVDGVLLI   70 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEE------eccCCHhHHHHHh--ccccEEEEE
Confidence            4699999 677899999999999999999977665444333  2212212      2356666777666  456665544


Q ss_pred             cCcCc-----cc---HHHHHHHHHcC--Cc------eeCCC-HHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          151 YGFLA-----EN---AVFVEMCREHG--IN------FIGPN-PDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~-----e~---~~~~~~l~~~g--i~------~~g~~-~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+...     ..   .......++.+  ..      .++.+ ........+|...-+.+...|++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~a~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~l~~sg~~~  136 (275)
T COG0702          71 SGLLDGSDAFRAVQVTAVVRAAEAAGAGVKHGVSLSVLGADAASPSALARAKAAVEAALRSSGIPY  136 (275)
T ss_pred             ecccccccchhHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCCccHHHHHHHHHHHHHHhcCCCe
Confidence            32111     11   12223333323  21      23322 244566888999999999999983

>PRK08265 short chain dehydrogenase; Provisional

Probab=93.35  E-value=0.3  Score=43.36  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA   40 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 46789999999999999999986554

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.33  E-value=0.41  Score=42.22  Aligned_cols=36  Identities=14%  Similarity=0.039  Sum_probs=30.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   41 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA   41 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            357899999 577899999999999999999865543

>PRK07074 short chain dehydrogenase; Provisional

Probab=93.32  E-value=0.39  Score=42.29  Aligned_cols=35  Identities=20%  Similarity=0.193  Sum_probs=29.5

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~   36 (257)
T PRK07074          1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDA   36 (257)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3578999994 6789999999999999999886543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.29  E-value=0.61  Score=37.52  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIP-CVAVYSTI  104 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~  104 (313)
                      +|+|+|.|.+|..+++.|-+.|+. ++++|.+.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            589999999999999999999994 77775543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12742 oxidoreductase; Provisional

Probab=93.27  E-value=0.53  Score=40.81  Aligned_cols=75  Identities=15%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id  145 (313)
                      +.++|||+| ++.+|..+++.+.+.|++|+++..........  .......+..+       ..+.+.+.++..+. ++|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D-------~~~~~~~~~~~~~~~~id   77 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTD-------SADRDAVIDVVRKSGALD   77 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecC-------CCCHHHHHHHHHHhCCCc
Confidence            358899999 56799999999999999988764321111100  11111222221       23445566665554 489


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      +++-.-
T Consensus        78 ~li~~a   83 (237)
T PRK12742         78 ILVVNA   83 (237)
T ss_pred             EEEECC
Confidence            887553

>PRK06988 putative formyltransferase; Provisional

Probab=93.26  E-value=0.3  Score=45.04  Aligned_cols=78  Identities=14%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcch------hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA------LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~------~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      ||+||++.|.+..+...+++|.+.|+++.+|.+.++...      ....++.+.- ++ -....+ .+-+.+++.+++.+
T Consensus         1 ~~mkIvf~Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~g-ip-~~~~~~-~~~~~~~~~l~~~~   77 (312)
T PRK06988          1 MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHG-IP-VITPAD-PNDPELRAAVAAAA   77 (312)
T ss_pred             CCcEEEEEeCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcC-Cc-EEcccc-CCCHHHHHHHHhcC
Confidence            357999999999999999999999999988876654332      1223332210 10 000011 22345677888899


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|+++..
T Consensus        78 ~Dliv~~   84 (312)
T PRK06988         78 PDFIFSF   84 (312)
T ss_pred             CCEEEEe
Confidence            9988754

>PRK07825 short chain dehydrogenase; Provisional

Probab=93.22  E-value=0.29  Score=43.69  Aligned_cols=34  Identities=9%  Similarity=0.065  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~   39 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGARVAIGDLDE   39 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999998886543

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.22  E-value=0.47  Score=41.40  Aligned_cols=34  Identities=12%  Similarity=0.091  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.+.+.|+++++++.+.
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~   41 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA   41 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            58899999 57799999999999999999886443

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=93.20  E-value=0.48  Score=44.03  Aligned_cols=76  Identities=13%  Similarity=0.026  Sum_probs=44.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC-Ccchh--hhhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI-DKDAL--HVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~-~~~~~--~~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      |++|||+| .|.+|..+++.|.+.|++++++.... .....  .....  .....+.     -+..+.+.+.++.++.++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~   75 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEK-----VDICDRAELARVFTEHQP   75 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEE-----CCCcChHHHHHHHhhcCC
Confidence            36899999 57799999999999999865443221 11000  00100  1111110     123456677777777779


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |.|+-.-
T Consensus        76 D~Vih~A   82 (355)
T PRK10217         76 DCVMHLA   82 (355)
T ss_pred             CEEEECC
Confidence            9887553

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=93.18  E-value=0.45  Score=44.09  Aligned_cols=72  Identities=8%  Similarity=-0.118  Sum_probs=47.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc--hhhhhhc----------CceEEccCCCCCCCcCCHHHHHHH
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHVKLA----------DESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~--~~~~~~a----------d~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      ++|||+| +|.+|..+++.|.+.|++|++++..+...  .....+.          -..+.       .+..+.+.+.++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~l~~~   73 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHY-------GDLTDSSNLRRI   73 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEE-------eccCCHHHHHHH
Confidence            5899999 57799999999999999999886443211  0000110          01111       124566778888


Q ss_pred             HHhcCCCEEeec
Q 021372          139 AISRGCTMLHPG  150 (313)
Q Consensus       139 ~~~~~id~vip~  150 (313)
                      ++..++|.|+-.
T Consensus        74 ~~~~~~d~ViH~   85 (343)
T TIGR01472        74 IDEIKPTEIYNL   85 (343)
T ss_pred             HHhCCCCEEEEC
Confidence            887788987743

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.17  E-value=0.37  Score=45.95  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +++++|+|.|..|..+++.|++.|+++++++.+..  .. ....+..+..+      +..+. +.++.+.-.+.++++..
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~-~~~~g~~vI~G------D~td~-e~L~~AgI~~A~aVI~~  309 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EH-RLPDDADLIPG------DSSDS-AVLKKAGAARARAILAL  309 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hh-hccCCCcEEEe------CCCCH-HHHHhcCcccCCEEEEc
Confidence            57899999999999999999999999999975422  11 11112222222      12333 34444444467888865


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+...++.......++.+     |+...+..+.|.. ..+.++++|...
T Consensus       310 t~dD~~Nl~ivL~ar~l~-----p~~kIIa~v~~~~-~~~~L~~~GaD~  352 (393)
T PRK10537        310 RDNDADNAFVVLAAKEMS-----SDVKTVAAVNDSK-NLEKIKRVHPDM  352 (393)
T ss_pred             CCChHHHHHHHHHHHHhC-----CCCcEEEEECCHH-HHHHHHhcCCCE
Confidence            433333333333333322     2223333444443 356667777553

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.17  E-value=0.51  Score=41.08  Aligned_cols=34  Identities=15%  Similarity=0.090  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~   41 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE   41 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 55689999999999999999986543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.17  E-value=0.39  Score=43.81  Aligned_cols=70  Identities=21%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++|||+| +|.+|..+++.|.+.|++|++++..+...........+.+..       +..+.+.+.+++.  ++|.|+-.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~l~~~~~--~~d~vi~~   71 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEG-------DLRDPASLRKAVA--GCRALFHV   71 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEe-------eCCCHHHHHHHHh--CCCEEEEe
Confidence            3799999 578999999999999999999876543211100011112211       2345566666664  47877643

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02686 cinnamoyl-CoA reductase

Probab=93.14  E-value=0.41  Score=45.07  Aligned_cols=42  Identities=10%  Similarity=0.135  Sum_probs=32.9

Q ss_pred             CCcCcccccccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           62 GGALKVTCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        62 ~~~~~~~~~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ++..+...++++|||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus        44 ~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~   86 (367)
T PLN02686         44 AGDAGADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT   86 (367)
T ss_pred             ccccccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            334445556789999994 778999999999999999876433

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=93.10  E-value=0.73  Score=39.93  Aligned_cols=89  Identities=11%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHH--HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTA--HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al--~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|+|+|.|..|..+++.+  ...|++++.+.++ ++... ...... +.+         ...+.+.+++++.++|.++
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~-d~~~~-~~~i~g-~~v---------~~~~~l~~li~~~~iD~Vi  151 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV-DPEKI-GTKIGG-IPV---------YHIDELEEVVKENDIEIGI  151 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC-Chhhc-CCEeCC-eEE---------cCHHHHHHHHHHCCCCEEE
Confidence            46899999999999988763  3578888876533 21111 111111 111         2356778888888999988


Q ss_pred             eccCcCcccHHHHHHHHHcCCcee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .+... .....+.+.+.+.|+..+
T Consensus       152 Ia~P~-~~~~~i~~~l~~~Gi~~i  174 (213)
T PRK05472        152 LTVPA-EAAQEVADRLVEAGIKGI  174 (213)
T ss_pred             EeCCc-hhHHHHHHHHHHcCCCEE
Confidence            66422 122345566667776544

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.10  E-value=0.4  Score=42.22  Aligned_cols=34  Identities=9%  Similarity=0.030  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~   40 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ   40 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 55689999999999999999886544

>PRK07060 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.55  Score=40.89  Aligned_cols=74  Identities=12%  Similarity=-0.041  Sum_probs=45.5

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHh-cCCCEE
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML  147 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~~id~v  147 (313)
                      .++++|+|+ +.+|..+++.+.+.|++|++++.+....... .......+..+       ..+.+.+.++... .++|+|
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D-------~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLD-------VGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEec-------CCCHHHHHHHHHHhCCCCEE
Confidence            478999995 6799999999999999999886543221111 11112233222       2334455555544 358988


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +-.-
T Consensus        82 i~~a   85 (245)
T PRK07060         82 VNCA   85 (245)
T ss_pred             EECC
Confidence            8654

>PRK07024 short chain dehydrogenase; Provisional

Probab=93.06  E-value=0.44  Score=42.12  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~   36 (257)
T PRK07024          1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRT   36 (257)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 66689999999999999999987543

>PRK07577 short chain dehydrogenase; Provisional

Probab=93.02  E-value=0.57  Score=40.49  Aligned_cols=35  Identities=11%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~   38 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAI   38 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999 566899999999999999999875543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=92.97  E-value=0.53  Score=37.12  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHH-cCCcEEEEecC
Q 021372           72 EKILVANR-GEIAVRVIRTAHE-MGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~-~G~~vi~v~~~  103 (313)
                      +||+|+|. |..|+.+++.+.+ .|+++......
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~   34 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDR   34 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEET
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEec
Confidence            47999997 9999999999999 78887765433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08703 short chain dehydrogenase; Provisional

Probab=92.97  E-value=0.35  Score=42.12  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            57899999 56689999999999999999887554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.94  E-value=1.9  Score=41.59  Aligned_cols=112  Identities=17%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|+|+|+|.+|..+++.|.+.|++|++++.+......  ...+.  ...+...      +.  .+.     ...++|+
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~------~~--~~~-----~~~~~d~   71 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLG------EY--PEE-----FLEGVDL   71 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeC------Cc--chh-----HhhcCCE
Confidence            688999999999999999999999999998764321110  01111  1111111      01  111     1235898


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------CC----HHHHHHHHHHCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------GD----KSTARETMKNAGV  197 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~D----K~~~~~~l~~~Gi  197 (313)
                      |+...+....+ .....+.+.|++++ ...+.....           .-    |....++|+..|-
T Consensus        72 vv~~~g~~~~~-~~~~~a~~~~i~~~-~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~  135 (450)
T PRK14106         72 VVVSPGVPLDS-PPVVQAHKKGIEVI-GEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGR  135 (450)
T ss_pred             EEECCCCCCCC-HHHHHHHHCCCcEE-eHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence            88766543333 35555667888887 344443332           22    3345567777774

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=92.94  E-value=0.3  Score=43.33  Aligned_cols=34  Identities=9%  Similarity=0.104  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSA   40 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 45689999999999999999886543

>PRK06180 short chain dehydrogenase; Provisional

Probab=92.89  E-value=0.3  Score=43.77  Aligned_cols=35  Identities=11%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++++||+| +|.+|..+++.|.+.|++|++++.++.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~   39 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEA   39 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHH
Confidence            57899999 566899999999999999999875543

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.88  E-value=0.49  Score=41.54  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |.+++||+| +|.+|..+++.|.+.|++|++++..
T Consensus         1 ~~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~   35 (256)
T PRK12745          1 MRPVALVTGGRRGIGLGIARALAAAGFDLAINDRP   35 (256)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            457899999 5668999999999999999988643

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.85  E-value=0.96  Score=40.62  Aligned_cols=117  Identities=14%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh----cC-CCE
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RG-CTM  146 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~----~~-id~  146 (313)
                      +|||+| .|.+|..+++.|.+.|++|.++..++.....   ...+.+.       -++.+.+.+.+..+.    .+ +|.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~-------~d~~d~~~l~~a~~~~~~~~g~~d~   70 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVK-------FDWLDEDTWDNPFSSDDGMEPEISA   70 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCcccc-------ccCCCHHHHHHHHhcccCcCCceeE
Confidence            489999 5889999999999999999998765542211   1111111       235666666666542    34 777


Q ss_pred             EeeccCcCcc----cHHHHHHHHHcCCcee-CCCHH-HHHHhCCHHHHHHHHHHC-CCCC
Q 021372          147 LHPGYGFLAE----NAVFVEMCREHGINFI-GPNPD-SIRIMGDKSTARETMKNA-GVPT  199 (313)
Q Consensus       147 vip~~g~~~e----~~~~~~~l~~~gi~~~-g~~~~-~i~~~~DK~~~~~~l~~~-Gip~  199 (313)
                      ++...+....    ...+.+.+.+.|++-+ ..+.. .......+..+.+.+++. |++.
T Consensus        71 v~~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~  130 (285)
T TIGR03649        71 VYLVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEY  130 (285)
T ss_pred             EEEeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCE
Confidence            7643321111    1234555666776422 11110 000112344455677775 7764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.85  E-value=2  Score=41.73  Aligned_cols=114  Identities=13%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|+|+|.|..|+.+++.|++.|+.|.+.|..+......  ..+.  ...+..+       ....+.+      .++|.
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~-------~~~~~~~------~~~dl   80 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLG-------ENYLDKL------DGFDV   80 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeC-------CCChHHh------ccCCE
Confidence            4689999999999999999999999999987543222110  1122  1122121       0111222      34788


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------C----CHHHHHHHHHHCCCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------G----DKSTARETMKNAGVPT  199 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~----DK~~~~~~l~~~Gip~  199 (313)
                      |+...+....+. ....+.+.|+++.+ ..+.+...           .    -|..+.++|+..|..+
T Consensus        81 VV~Spgi~~~~p-~~~~a~~~~i~i~s-~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~  146 (458)
T PRK01710         81 IFKTPSMRIDSP-ELVKAKEEGAYITS-EMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT  146 (458)
T ss_pred             EEECCCCCCCch-HHHHHHHcCCcEEe-chHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence            887654333333 34444578888873 44433221           1    2445557777777654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.76  E-value=0.47  Score=45.79  Aligned_cols=116  Identities=8%  Similarity=0.044  Sum_probs=65.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .+++++|+|.|..|..+++.|.+.|+++++++.+++........ .+..+..+      +..+.+.+.+ +.-.+.|.|+
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~g------d~~~~~~L~~-~~~~~a~~vi  302 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHG------DGTDQELLEE-EGIDEADAFI  302 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEEC------CCCCHHHHHh-cCCccCCEEE
Confidence            36889999999999999999999999999997766533222211 12222222      1233434433 3334688888


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ...+....+......+.+.+..      ..+..+.|... .+.++.+|+..
T Consensus       303 ~~~~~~~~n~~~~~~~~~~~~~------~ii~~~~~~~~-~~~~~~~g~~~  346 (453)
T PRK09496        303 ALTNDDEANILSSLLAKRLGAK------KVIALVNRPAY-VDLVEGLGIDI  346 (453)
T ss_pred             ECCCCcHHHHHHHHHHHHhCCC------eEEEEECCcch-HHHHHhcCCCE
Confidence            6543222222222333444432      22233444443 45578888653

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.75  E-value=0.89  Score=44.39  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|+|+|+|.+|+.+++.|+++|++|++++........  ...+.+  -.++.+.        ..+      ....+|.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~--------~~~------~~~~~D~   81 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGP--------GPT------LPEDTDL   81 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECC--------Ccc------ccCCCCE
Confidence            578999999999999999999999999998643321111  111211  1222221        011      1245888


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCC-------------------HHHHHHHHHHCCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD-------------------KSTARETMKNAGVP  198 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~D-------------------K~~~~~~l~~~Gip  198 (313)
                      |+...|....+. +...+.+.|+++. ...+.+....+                   |....++|+..|..
T Consensus        82 Vv~s~Gi~~~~~-~~~~a~~~gi~v~-~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~  150 (480)
T PRK01438         82 VVTSPGWRPDAP-LLAAAADAGIPVW-GEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLR  150 (480)
T ss_pred             EEECCCcCCCCH-HHHHHHHCCCeec-chHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCC
Confidence            887766544443 3444567899887 35554433221                   33456777777754

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=92.73  E-value=1.6  Score=33.53  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             EEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           73 KILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ||+|+|.|..+...++++.+.  +++++.+. +++.... ..++.. +.++      .|.+.+   ++....++|+|+..
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~-d~~~~~~-~~~~~~-~~~~------~~~~~~---~ll~~~~~D~V~I~   69 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVC-DPDPERA-EAFAEK-YGIP------VYTDLE---ELLADEDVDAVIIA   69 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEE-CSSHHHH-HHHHHH-TTSE------EESSHH---HHHHHTTESEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEE-eCCHHHH-HHHHHH-hccc------chhHHH---HHHHhhcCCEEEEe
Confidence            799999999999999888887  55666554 3332211 111110 0010      134444   44445689999876


Q ss_pred             cCcCcccHHHHHHHHHcCCcee
Q 021372          151 YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .. ..........+.+.|++++
T Consensus        70 tp-~~~h~~~~~~~l~~g~~v~   90 (120)
T PF01408_consen   70 TP-PSSHAEIAKKALEAGKHVL   90 (120)
T ss_dssp             SS-GGGHHHHHHHHHHTTSEEE
T ss_pred             cC-CcchHHHHHHHHHcCCEEE
Confidence            42 2234556666667888775

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06138 short chain dehydrogenase; Provisional

Probab=92.69  E-value=0.52  Score=41.19  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~   39 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA   39 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence            57899999 56689999999999999999886543

>PRK06482 short chain dehydrogenase; Provisional

Probab=92.68  E-value=0.52  Score=42.07  Aligned_cols=35  Identities=6%  Similarity=-0.010  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus         1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~   36 (276)
T PRK06482          1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRRP   36 (276)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 57799999999999999999886543

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.67  E-value=0.36  Score=44.86  Aligned_cols=35  Identities=9%  Similarity=0.047  Sum_probs=29.6

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+|+ +.+|+.+++.+.+.|++|++++.+.
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~   41 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDE   41 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3578999994 6789999999999999999886544

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.66  E-value=0.57  Score=41.38  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~   41 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDA   41 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 55689999999999999999886543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.58  E-value=0.58  Score=41.00  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=29.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| +|.+|..+++.+.+.|++|++++.++.
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~   39 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE   39 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999 677899999999999999999865543

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=92.57  E-value=0.63  Score=40.43  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 ~~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~   36 (245)
T PRK12824          1 MKKIALVTGAKRGIGSAIARELLNDGYRVIATYFSG   36 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence            357899998 66689999999999999999986553

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.54  E-value=0.56  Score=40.84  Aligned_cols=34  Identities=12%  Similarity=0.073  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 47789999999999999999986543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.52  E-value=0.66  Score=40.88  Aligned_cols=35  Identities=9%  Similarity=0.005  Sum_probs=29.4

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus         1 m~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~   36 (259)
T PRK12384          1 MNQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINS   36 (259)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4678999994 5689999999999999999887543

>PLN00198 anthocyanidin reductase; Provisional

Probab=92.50  E-value=0.73  Score=42.57  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~   43 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDP   43 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCC
Confidence            67899999 66789999999999999998775443

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.45  E-value=0.54  Score=41.81  Aligned_cols=34  Identities=9%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~   43 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ   43 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999994 6789999999999999999986543

>PRK06196 oxidoreductase; Provisional

Probab=92.44  E-value=0.38  Score=44.07  Aligned_cols=34  Identities=9%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~   60 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP   60 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999994 6689999999999999999886543

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=92.44  E-value=0.95  Score=43.82  Aligned_cols=90  Identities=13%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .+++||+|+|..+..+++++++   .|++++.+-++.....  .......          -..+.+.+.++++++++|.|
T Consensus       125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g~p----------Vlg~~~~l~~~i~~~~id~V  192 (445)
T TIGR03025       125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAGLP----------VLGKLDDLVELVRAHRVDEV  192 (445)
T ss_pred             CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCCCc----------ccCCHHHHHHHHHhCCCCEE
Confidence            4679999999999999999975   4788876543321111  1111111          12457789999999999988


Q ss_pred             eeccCcCccc--HHHHHHHHHcCCcee
Q 021372          148 HPGYGFLAEN--AVFVEMCREHGINFI  172 (313)
Q Consensus       148 ip~~g~~~e~--~~~~~~l~~~gi~~~  172 (313)
                      +.......+.  ..+.+.+++.|+.+.
T Consensus       193 iIa~p~~~~~~~~~ll~~~~~~gv~V~  219 (445)
T TIGR03025       193 IIALPLSEEARILELLLQLRDLGVDVR  219 (445)
T ss_pred             EEecCcccHHHHHHHHHHHHhcCCEEE
Confidence            8764322222  356677778887663

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=92.43  E-value=0.57  Score=43.03  Aligned_cols=34  Identities=3%  Similarity=0.191  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++++||+| .+.+|..+++.|.+.|++|++++.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   39 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRN   39 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            467899999 5668999999999999999988644

>PRK07102 short chain dehydrogenase; Provisional

Probab=92.43  E-value=0.7  Score=40.32  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~   35 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDV   35 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            36899999 67789999999999999999987554

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.42  E-value=2.5  Score=41.11  Aligned_cols=112  Identities=12%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|-|..|+.+++.|++ |.+|++.|...........+.+..+ ..      . ...+.+      .++|.|+..
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~-~~------~-~~~~~~------~~~d~vV~S   70 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNA-IA------A-LSDSRW------QNLDKIVLS   70 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCce-ec------c-CChhHh------hCCCEEEEC
Confidence            5789999999999999999995 9999998733222111111111111 21      0 011111      357888876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC-C---------------HHHHHHHHHHCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMG-D---------------KSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~-D---------------K~~~~~~l~~~Gip~  199 (313)
                      .+....+.. ...+.+.|++++ ...+.+.... +               +....++|+..|..+
T Consensus        71 PgI~~~~p~-~~~a~~~gi~v~-~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~  133 (454)
T PRK01368         71 PGIPLTHEI-VKIAKNFNIPIT-SDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDY  133 (454)
T ss_pred             CCCCCCCHH-HHHHHHCCCcee-cHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence            654444443 344457789887 3555542222 2               234567778877653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.42  E-value=0.61  Score=45.94  Aligned_cols=51  Identities=18%  Similarity=0.167  Sum_probs=39.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEc
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI  120 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v  120 (313)
                      ...+|+|+|+|..|+..+..++.+|.+|+++|.++........+-..++.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i  214 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL  214 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence            478999999999999999999999999999877666555544444443434

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=92.41  E-value=0.58  Score=41.28  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            57899999 5668999999999999999988654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.41  E-value=1.2  Score=41.54  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      ..++|||+|.|.+|..+++.|.+.|+ +++++|.|.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            46789999999999999999999999 677786553

>PLN02778 3,5-epimerase/4-reductase

Probab=92.35  E-value=0.6  Score=42.62  Aligned_cols=30  Identities=23%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVA   99 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~   99 (313)
                      +.+||||+| +|.+|..+++.|.+.|++|++
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~   38 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY   38 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence            357899999 677999999999999999864

>PRK09291 short chain dehydrogenase; Provisional

Probab=92.33  E-value=0.48  Score=41.64  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |++++||+| +|.+|..+++.|.+.|++|+++..+
T Consensus         1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999 5678999999999999999987644

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.30  E-value=0.97  Score=43.71  Aligned_cols=116  Identities=20%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcCce--EEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADES--VCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~--~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ++||+|+|-|..|+.+++.|++.|++|++.|..+........ .....  +..+       ..+.      ..-..+|.|
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g-------~~~~------~~~~~~d~v   73 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELG-------SHDD------EDLAEFDLV   73 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecC-------ccch------hccccCCEE
Confidence            789999999999999999999999999999866655211111 11111  1111       0110      112457888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh------------CCHHHH----HHHHHHCCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM------------GDKSTA----RETMKNAGVPTVP  201 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~------------~DK~~~----~~~l~~~Gip~p~  201 (313)
                      +...|.-..+. ..+...+.|+++.| +.+.....            .-|..+    .++|++.|.++.-
T Consensus        74 V~SPGi~~~~p-~v~~A~~~gi~i~~-dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l  141 (448)
T COG0771          74 VKSPGIPPTHP-LVEAAKAAGIEIIG-DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL  141 (448)
T ss_pred             EECCCCCCCCH-HHHHHHHcCCcEEe-HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCcee
Confidence            87665444444 44555678988885 44443332            345443    5678888887653

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=92.29  E-value=0.7  Score=40.39  Aligned_cols=32  Identities=16%  Similarity=0.137  Sum_probs=27.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      |++++||+| ++.+|..+++.+.+.|++|+++.
T Consensus         1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~   33 (248)
T PRK06947          1 MRKVVLITGASRGIGRATAVLAAARGWSVGINY   33 (248)
T ss_pred             CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence            578999999 55689999999999999988764

>PRK06179 short chain dehydrogenase; Provisional

Probab=92.28  E-value=0.73  Score=40.94  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++++|+| +|.+|..+++.|.+.|++|++++.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46799999 56689999999999999999887654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=92.27  E-value=0.46  Score=43.79  Aligned_cols=72  Identities=11%  Similarity=-0.032  Sum_probs=45.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcC---ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad---~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      ++|||+| .|.+|..+++.|.+.|++|++++.........    .....   ..+..       +..+.+.+.+++...+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~   73 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALLTEILHDHA   73 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEc-------cCCCHHHHHHHHhcCC
Confidence            3799999 58899999999999999999885322111100    01111   11211       2345566767666667


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|+|+-.
T Consensus        74 ~d~vvh~   80 (338)
T PRK10675         74 IDTVIHF   80 (338)
T ss_pred             CCEEEEC
Confidence            9988754

>PRK05876 short chain dehydrogenase; Provisional

Probab=92.26  E-value=0.62  Score=41.86  Aligned_cols=34  Identities=9%  Similarity=-0.017  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            367899999 6668999999999999999888644

>PRK06940 short chain dehydrogenase; Provisional

Probab=92.23  E-value=1.1  Score=40.07  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.|.+||.|++.+|..+++.+. .|++|++++.+.
T Consensus         1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~   34 (275)
T PRK06940          1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNE   34 (275)
T ss_pred             CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCH
Confidence            5788999999899999999996 799999986543

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=92.23  E-value=0.5  Score=43.04  Aligned_cols=60  Identities=13%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+|+ |.+|.++++.|.+.| +|++++....           .+.       .+..+.+.+.++.+..++|+|+-.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------~~~-------~Dl~d~~~~~~~~~~~~~D~Vih~   61 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------DYC-------GDFSNPEGVAETVRKIRPDVIVNA   61 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------ccc-------CCCCCHHHHHHHHHhcCCCEEEEC
Confidence            37999995 889999999999999 7877642210           111       124566777787877789988843

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.17  E-value=2.4  Score=40.84  Aligned_cols=114  Identities=19%  Similarity=0.227  Sum_probs=66.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCc--eEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADE--SVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~--~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++++|+|.|.+|..+++.|.+.|++|++.+.+....... ..+...  .+..+        .+...+.    ..++|.|
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--------~~~~~~~----~~~~d~v   72 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICG--------SHPLELL----DEDFDLM   72 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeC--------CCCHHHh----cCcCCEE
Confidence            5789999999999999999999999999986543221111 112111  11111        1111211    1248888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------CCH----HHHHHHHHHCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------GDK----STARETMKNAGVP  198 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~DK----~~~~~~l~~~Gip  198 (313)
                      +...+....+ ...+.+.+.|+++. ...+.....           .-|    ....++|+..|..
T Consensus        73 V~s~gi~~~~-~~~~~a~~~~i~v~-~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~  136 (447)
T PRK02472         73 VKNPGIPYTN-PMVEKALEKGIPII-TEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQH  136 (447)
T ss_pred             EECCCCCCCC-HHHHHHHHCCCcEE-eHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCC
Confidence            8765433333 34455567899887 345543332           223    3556677777754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.15  E-value=0.73  Score=38.05  Aligned_cols=34  Identities=15%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++|.++|-|..|..+++.|.+.|++|.+++.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            5899999999999999999999999999886443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.15  E-value=0.9  Score=39.09  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      ...+|+|+|.|.+|..+++.|.+.|+ +++++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            36789999999999999999999999 67777544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05875 short chain dehydrogenase; Provisional

Probab=92.12  E-value=0.75  Score=40.99  Aligned_cols=34  Identities=18%  Similarity=0.105  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~   41 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP   41 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            58899999 47799999999999999999886543

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=92.09  E-value=1  Score=39.41  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence            57899999 56689999999999999999986543

>PRK08226 short chain dehydrogenase; Provisional

Probab=92.07  E-value=0.43  Score=42.19  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=29.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            358899999 6668999999999999999988654

>PRK12743 oxidoreductase; Provisional

Probab=92.07  E-value=0.8  Score=40.39  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=28.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      |++++||+| ++.+|..+++.+.+.|++|+++..
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~   34 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWH   34 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            467899999 556899999999999999988753

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.06  E-value=0.69  Score=42.66  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||.|+|.+|..+++.++.+|.+ |++++.+.........+....+ ++.  . + .. .+.+.++....++|.++-
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~-i~~--~-~-~~-~~~~~~~~~~~~~d~vid  237 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFV-INS--G-Q-DD-VQEIRELTSGAGADVAIE  237 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE-EcC--C-c-ch-HHHHHHHhCCCCCCEEEE
Confidence            57899999999999999999999999 8887654443332222222222 221  1 1 11 445555555557999996


Q ss_pred             ccCcCcccHHHHHHHHHcCC
Q 021372          150 GYGFLAENAVFVEMCREHGI  169 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi  169 (313)
                      ..+.........+.+...|.
T Consensus       238 ~~g~~~~~~~~~~~l~~~G~  257 (339)
T cd08239         238 CSGNTAARRLALEAVRPWGR  257 (339)
T ss_pred             CCCCHHHHHHHHHHhhcCCE
Confidence            54322111223455555554

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.05  E-value=1.1  Score=43.79  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc---eEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE---SVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~---~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +++|+|+|.|.+|+.+++.|.+.|+.|++.+.+....   ..+.++   .+..+       ..+.+.+      .++|.|
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~~l~~~gi~~~~~-------~~~~~~~------~~~d~v   78 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETAR---HKLIEVTGVADIST-------AEASDQL------DSFSLV   78 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHH---HHHHHhcCcEEEeC-------CCchhHh------cCCCEE
Confidence            4679999999999999999999999888876433221   111111   11111       0111222      247888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIG  173 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g  173 (313)
                      +...+....+.. ...+.+.|+++++
T Consensus        79 V~Spgi~~~~p~-~~~a~~~gi~v~~  103 (473)
T PRK00141         79 VTSPGWRPDSPL-LVDAQSQGLEVIG  103 (473)
T ss_pred             EeCCCCCCCCHH-HHHHHHCCCceee
Confidence            766543334433 3445678888874

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.03  E-value=0.77  Score=40.44  Aligned_cols=33  Identities=12%  Similarity=0.210  Sum_probs=28.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|+++...
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5668999999999999999887543

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.03  E-value=0.7  Score=41.00  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~   44 (263)
T PRK07814         10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE   44 (263)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 45689999999999999999887543

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.99  E-value=0.64  Score=43.97  Aligned_cols=71  Identities=11%  Similarity=0.094  Sum_probs=45.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ..+|+|+|.|..|+.+++.|+++|.+|++++.++.............+...       +.+.+.+.+.+.  +.|+|+.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~-------~~~~~~l~~~l~--~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTR-------YSNAYEIEDAVK--RADLLIGA  237 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEec-------cCCHHHHHHHHc--cCCEEEEc
Confidence            467999999999999999999999998888654432211111111112111       233455666653  57999865

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=91.99  E-value=0.87  Score=40.19  Aligned_cols=33  Identities=6%  Similarity=0.027  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            58899999 5668999999999999999988655

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.93  E-value=0.65  Score=41.47  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+|++   .+|+.+++.+.+.|++|++++.+
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            5789999975   58999999999999999887643

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=91.92  E-value=0.77  Score=43.48  Aligned_cols=115  Identities=19%  Similarity=0.274  Sum_probs=67.4

Q ss_pred             EEEEcCCHhHHHHHHHHHHcC-C-cEEEEecCCCcchhhhh--h--cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           74 ILVANRGEIAVRVIRTAHEMG-I-PCVAVYSTIDKDALHVK--L--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G-~-~vi~v~~~~~~~~~~~~--~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      |+|+|+|..|..+++.|.+.+ + ++++.+.+.........  .  .-....++       ..+.+.+.+++++  .|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d-------~~~~~~l~~~~~~--~dvV   71 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVD-------VNDPESLAELLRG--CDVV   71 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE---------TTTHHHHHHHHTT--SSEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEe-------cCCHHHHHHHHhc--CCEE
Confidence            799999999999999999986 4 67777655443222111  1  11223232       3566777887755  5999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      +...+.. ....+++.+.+.|++++-.+.    ....-....+.++++|+.....
T Consensus        72 in~~gp~-~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~~l~~  121 (386)
T PF03435_consen   72 INCAGPF-FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVTALPG  121 (386)
T ss_dssp             EE-SSGG-GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSEEE-S
T ss_pred             EECCccc-hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCEEEeC
Confidence            9775433 445788888899999983222    1111222345566788776655

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.92  E-value=3.8  Score=39.58  Aligned_cols=112  Identities=16%  Similarity=0.193  Sum_probs=66.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC---c-eEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD---E-SVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad---~-~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|+|+|.|.+|..+++.|.+.|++|++.+..+.... ...+..   . .+..+       ... +.+.     .++|.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~-~~~l~~~~~gi~~~~g-------~~~-~~~~-----~~~d~   70 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPER-VAQIGKMFDGLVFYTG-------RLK-DALD-----NGFDI   70 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchh-HHHHhhccCCcEEEeC-------CCC-HHHH-----hCCCE
Confidence            57899999999999999999999999998875543211 111111   1 11111       011 1111     35788


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC--------------C----HHHHHHHHHHCCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG--------------D----KSTARETMKNAGVP  198 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~--------------D----K~~~~~~l~~~Gip  198 (313)
                      |+...+....+..+ ..+.+.|+++. ...+.+....              -    +....++|+..|..
T Consensus        71 vv~spgi~~~~p~~-~~a~~~~i~v~-~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~  138 (445)
T PRK04308         71 LALSPGISERQPDI-EAFKQNGGRVL-GDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD  138 (445)
T ss_pred             EEECCCCCCCCHHH-HHHHHcCCcEE-EhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence            88776544444444 33456788887 4555543321              1    34556777888865

>PRK06172 short chain dehydrogenase; Provisional

Probab=91.89  E-value=0.89  Score=39.90  Aligned_cols=35  Identities=14%  Similarity=0.047  Sum_probs=29.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+..
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            47899999 566899999999999999998875543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.88  E-value=1.5  Score=40.37  Aligned_cols=51  Identities=10%  Similarity=0.062  Sum_probs=39.1

Q ss_pred             CccccCCCCCcCccccc-------ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           54 KLKRRCGGGGALKVTCR-------QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        54 ~~~~~~~~~~~~~~~~~-------~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+.|-=-+|.+..++|       .++|.|+|.|.+|...++-++.+|++|++++...
T Consensus       158 ~~aAPlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~  215 (360)
T KOG0023|consen  158 ASAAPLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS  215 (360)
T ss_pred             hhccchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence            33444445566666665       4689999977799999999999999999998764

>PRK07806 short chain dehydrogenase; Provisional

Probab=91.85  E-value=0.93  Score=39.57  Aligned_cols=33  Identities=18%  Similarity=0.220  Sum_probs=28.3

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+|+ |.+|..+++.|.+.|++|+++..+
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999994 779999999999999999887543

>PRK09126 hypothetical protein; Provisional

Probab=91.85  E-value=0.25  Score=46.69  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ||...|+|+|+|+.|..++.+|.+.|++|++++..+
T Consensus         1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~   36 (392)
T PRK09126          1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP   36 (392)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            345679999999999999999999999999997554

>PRK06523 short chain dehydrogenase; Provisional

Probab=91.82  E-value=0.77  Score=40.47  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999 56689999999999999999986543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.80  E-value=1  Score=35.79  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=28.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~  104 (313)
                      .+||+|+|.|.+|..+++.|.+.|+. ++++|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            47899999999999999999999994 77776543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08263 short chain dehydrogenase; Provisional

Probab=91.79  E-value=0.49  Score=42.30  Aligned_cols=35  Identities=14%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~   37 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDT   37 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            457899999 66689999999999999999886543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=91.78  E-value=2.6  Score=37.31  Aligned_cols=120  Identities=11%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcE-EEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPC-VAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~v-i~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|+|+|.|.+|..+++.|.+.|+.- +++|.+.-..   +.+..+.++..  .+. ...-.+.+.+.+++...+.-+-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~---sNL~RQ~l~~~--~di-G~~Ka~~a~~~l~~inp~v~i~   97 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL---SNLQRQVLHSD--ANI-GQPKVESAKDALTQINPHIAIN   97 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc---cCcccceeeeH--hhC-CCcHHHHHHHHHHHHCCCcEEE
Confidence            578999999999999999999999864 4554433211   23333333211  011 1122455566666666655443


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      .+....+.....+.+....+-+-..+...     .+....+.+.++|+|..-
T Consensus        98 ~~~~~i~~~~~~~~~~~~DlVvd~~D~~~-----~r~~ln~~~~~~~ip~v~  144 (240)
T TIGR02355        98 PINAKLDDAELAALIAEHDIVVDCTDNVE-----VRNQLNRQCFAAKVPLVS  144 (240)
T ss_pred             EEeccCCHHHHHHHhhcCCEEEEcCCCHH-----HHHHHHHHHHHcCCCEEE
Confidence            33211111234445555555443222211     255566777888887653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=91.76  E-value=0.58  Score=37.44  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=28.4

Q ss_pred             ccEEEEEcCCHh----HHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEI----AVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~----a~~v~~al~~~G~~vi~v~~  102 (313)
                      .|+|.++|.+..    ++.+.+.|.+.||+|+.+++
T Consensus        16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP   51 (140)
T COG1832          16 AKTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNP   51 (140)
T ss_pred             CceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCc
Confidence            588999997774    99999999999999999954

>PRK07890 short chain dehydrogenase; Provisional

Probab=91.64  E-value=0.65  Score=40.80  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~   39 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA   39 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999 56689999999999999999886543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.63  E-value=0.64  Score=41.64  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=41.8

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      ||||+| .|.+|..+++.|.+.|++|+++...               ..       +..+.+.+.+++...++|.|+-..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------~~-------d~~~~~~~~~~~~~~~~d~vi~~a   58 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS---------------QL-------DLTDPEALERLLRAIRPDAVVNTA   58 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------cc-------CCCCHHHHHHHHHhCCCCEEEECC
Confidence            589999 5889999999999999999887531               01       123456677777666788887543

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.60  E-value=0.75  Score=40.76  Aligned_cols=34  Identities=32%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+|+   +.+|..+++.|.+.|++|++.+.+
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~   42 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFG   42 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCc
Confidence            3578999996   578999999999999999887543

>COG2308 Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=0.3  Score=46.42  Aligned_cols=72  Identities=22%  Similarity=0.387  Sum_probs=55.5

Q ss_pred             HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEE--eCCHHHHHHHHHHHHHHHHhcCCCCcEEEee
Q 021372          193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK  270 (313)
Q Consensus       193 ~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~--v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe  270 (313)
                      ++.-++.++||  .|...++....+.++. -+||||..|+||-|+.+  .-+.+|+.+..+.+....      .+++.|+
T Consensus       340 e~~lL~nv~T~--~c~~~~el~~VL~~l~-~lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~a~p------~~~IaQ~  410 (488)
T COG2308         340 EEPLLPNVPTY--WCGEPDELEHVLANLS-ELVIKPVEGSGGYGMLVGPAASKAELAAFAERIKADP------ENYIAQP  410 (488)
T ss_pred             cccccCCCCee--ecCCHHHHHHHHhchh-hheEeeeccCCCCcceeccccCHHHHHHHHHHHHhCh------hhhcccc
Confidence            45678889997  8888899888888775 68999999998888766  567788888888877653      5566666


Q ss_pred             ccC
Q 021372          271 YVQ  273 (313)
Q Consensus       271 ~I~  273 (313)
                      -+.
T Consensus       411 ~~~  413 (488)
T COG2308         411 VLQ  413 (488)
T ss_pred             ccc
Confidence            543

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.57  E-value=1.6  Score=42.49  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|-|.+|.. +++.|+++|++|++.|.......  ..+...-+.+..     .. ..+.+      .++|.|+.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~--~~l~~~gi~~~~-----~~-~~~~~------~~~d~vv~   72 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVT--QRLLELGAIIFI-----GH-DAENI------KDADVVVY   72 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHH--HHHHHCCCEEeC-----CC-CHHHC------CCCCEEEE
Confidence            468999999999999 79999999999999875443211  122211111100     01 11221      25888887


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-CC---------------HHHHHHHHHHCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-GD---------------KSTARETMKNAGV  197 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-~D---------------K~~~~~~l~~~Gi  197 (313)
                      ..+....+..+ ..+.+.|++++ ...+.+... .+               +....++|+..|.
T Consensus        73 spgi~~~~~~~-~~a~~~~i~i~-~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         73 SSAIPDDNPEL-VAARELGIPVV-RRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             CCCCCCCCHHH-HHHHHCCCcEE-eHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            76544444444 44457899988 455554333 22               2345678888885

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=91.56  E-value=1.6  Score=42.59  Aligned_cols=86  Identities=10%  Similarity=0.052  Sum_probs=57.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc---CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM---GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~---G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .+++||+|+|..|..+++++++.   |++++.+-++.. ..      .  ..+      .-+.+.+.+.++++++++|.|
T Consensus       143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~-~~------g--~~V------pvlG~~~dL~~~v~~~~IdeV  207 (463)
T PRK10124        143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPK-PG------G--VSN------DWAGNLQQLVEDAKAGKIHNV  207 (463)
T ss_pred             CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCc-cc------c--CCC------CcCCCHHHHHHHHHhCCCCEE
Confidence            46799999999999999999764   788876543321 00      0  001      013457788999999999988


Q ss_pred             eeccCcCccc--HHHHHHHHHcCCce
Q 021372          148 HPGYGFLAEN--AVFVEMCREHGINF  171 (313)
Q Consensus       148 ip~~g~~~e~--~~~~~~l~~~gi~~  171 (313)
                      +.......+.  ..+.+.+++.++.+
T Consensus       208 iIAip~~~~~~l~ell~~~~~~~v~V  233 (463)
T PRK10124        208 YIAMSMCDGARVKKLVRQLADTTCSV  233 (463)
T ss_pred             EEeCCCcchHHHHHHHHHHHHcCCeE
Confidence            8765333222  34556677778765

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=91.55  E-value=0.74  Score=38.28  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+|+|+|+|..|...++.|+.+|+++++++..+.
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            57899999999999999999999999999976544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=91.54  E-value=3.4  Score=36.95  Aligned_cols=111  Identities=23%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchh-------------hhh--------hcCceEEccCCCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDAL-------------HVK--------LADESVCIGEAPSS  126 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~-------------~~~--------~ad~~~~v~~~~~~  126 (313)
                      ++.||+|+| +|.+|+.+++++.+.. +++...-..+.....             ...        ..+..+.+|  .+.
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~ID--FT~   78 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLID--FTT   78 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEE--CCC
Confidence            367899999 5889999999999864 565543322221110             000        001112122  111


Q ss_pred             CCcCCHHHHHHHHHhcCCCEEeeccCcCcccH-HHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          127 QSYLLIPNVLSAAISRGCTMLHPGYGFLAENA-VFVEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       127 ~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~-~~~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                        +.-...++++|.++++..|+.+.|+..+.. .+.++.+..++- +.||...-.++..|
T Consensus        79 --P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~v~vv-~a~NfSiGvnll~~  135 (266)
T COG0289          79 --PEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEKVPVV-IAPNFSLGVNLLFK  135 (266)
T ss_pred             --chhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhhCCEE-EeccchHHHHHHHH
Confidence              123456778888888999998887776653 344444443332 33555544444433

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.53  E-value=0.68  Score=41.18  Aligned_cols=79  Identities=20%  Similarity=0.149  Sum_probs=45.8

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc----C-ceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA----D-ESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a----d-~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      ..+++||+|+   +.+|+.+++.+.+.|++|++.+...........+.    . ..+.+|    ..+..+++.+++.+.+
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D----v~~~~~v~~~~~~~~~   80 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCD----VASDDEINQVFADLGK   80 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECC----CCCHHHHHHHHHHHHH
Confidence            3578999994   46899999999999999988643211111111111    1 122222    2233445556655544


Q ss_pred             c--CCCEEeeccC
Q 021372          142 R--GCTMLHPGYG  152 (313)
Q Consensus       142 ~--~id~vip~~g  152 (313)
                      +  ++|+++-.-|
T Consensus        81 ~~g~iD~lVnnAG   93 (261)
T PRK08690         81 HWDGLDGLVHSIG   93 (261)
T ss_pred             HhCCCcEEEECCc
Confidence            3  5898886543

>PRK05868 hypothetical protein; Validated

Probab=91.52  E-value=0.3  Score=46.06  Aligned_cols=35  Identities=9%  Similarity=0.011  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |++|+|+|+|..|+.++..|++.|++|.+++..+.
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            46899999999999999999999999999976543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=91.52  E-value=2.2  Score=36.58  Aligned_cols=75  Identities=12%  Similarity=0.101  Sum_probs=44.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ...+|+|+|.|.+|..+++.|-..|+. ++++|.+.-..   +.+...++ +.+...+-...-.+.+.+.+++.++++-+
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~---snl~rq~~-~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i   93 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVST---EDLGSNFF-LDAEVSNSGMNRAAASYEFLQELNPNVKL   93 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCCh---hcCcccEe-cccchhhcCchHHHHHHHHHHHHCCCCEE
Confidence            357899999999999999999999998 56665443211   23333333 21100111112244555666666665544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=91.48  E-value=1  Score=41.89  Aligned_cols=33  Identities=9%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +++|||+| .|.+|..+++.|.+.|++|++++..
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~   48 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNF   48 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999 5889999999999999999988643

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.46  E-value=0.75  Score=41.81  Aligned_cols=34  Identities=21%  Similarity=0.200  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999 57789999999999999999986543

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=91.45  E-value=1.4  Score=42.82  Aligned_cols=89  Identities=9%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++++|+|+|..+..+++++++   .|++++.+-++.....  .......          -..+.+.+.+.++++++|.|
T Consensus       128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~~~gvp----------Vlg~~~dl~~~i~~~~vd~V  195 (451)
T TIGR03023       128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDAR--TGVRGVP----------VLGKLDDLEELIREGEVDEV  195 (451)
T ss_pred             CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCccc--cccCCCC----------ccCCHHHHHHHHHhcCCCEE
Confidence            4779999999999999999976   3788776543321111  0111101          12456788999999999988


Q ss_pred             eeccCcCcc--cHHHHHHHHHcCCce
Q 021372          148 HPGYGFLAE--NAVFVEMCREHGINF  171 (313)
Q Consensus       148 ip~~g~~~e--~~~~~~~l~~~gi~~  171 (313)
                      +........  ...+.+.+++.|+.+
T Consensus       196 iIA~p~~~~~~~~~ll~~~~~~gv~V  221 (451)
T TIGR03023       196 YIALPLAAEDRILELLDALEDLTVDV  221 (451)
T ss_pred             EEeeCcccHHHHHHHHHHHHhcCCEE
Confidence            876532222  134566677777755

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>PRK06841 short chain dehydrogenase; Provisional

Probab=91.43  E-value=0.62  Score=40.92  Aligned_cols=34  Identities=9%  Similarity=0.033  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~   49 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE   49 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 57789999999999999999886544

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=91.40  E-value=0.77  Score=40.66  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS   38 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 4568999999999999999988643

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.39  E-value=0.62  Score=41.80  Aligned_cols=32  Identities=16%  Similarity=0.192  Sum_probs=28.3

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .|.+||+|++   .+|+.+++.|.+.|++|++++.
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r   41 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ   41 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence            5789999976   6999999999999999998753

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.36  E-value=1.3  Score=40.04  Aligned_cols=34  Identities=18%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++...
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999 56689999999999999999886543

>PRK06914 short chain dehydrogenase; Provisional

Probab=91.35  E-value=0.89  Score=40.60  Aligned_cols=36  Identities=8%  Similarity=0.113  Sum_probs=29.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.+++||+| +|.+|..+++.+.+.|++|++++.+++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~   38 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE   38 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            357799999 567899999999999999999865543

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=91.34  E-value=0.83  Score=42.41  Aligned_cols=31  Identities=16%  Similarity=0.163  Sum_probs=26.8

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEec
Q 021372           72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS  102 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~  102 (313)
                      ++|||+|+ |.+|..+++.|.+. |++|+.++.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence            57999995 88999999999876 799998863

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=91.33  E-value=1.2  Score=38.73  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=27.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| +|.+|..+++.+.+.|+.|++.+.+
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            57899999 6778999999999999988776543

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=91.31  E-value=0.77  Score=39.85  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+|+|..|.+=++.+-+.|-+|+++.+..
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~   45 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF   45 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            5789999999999999999999999999996554

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.26  E-value=0.34  Score=45.76  Aligned_cols=35  Identities=11%  Similarity=0.122  Sum_probs=31.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |..+|+|+|+|..|+.++.+|++.|++|.+++..+
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~   37 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA   37 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence            35789999999999999999999999999997654

>PRK08628 short chain dehydrogenase; Provisional

Probab=91.26  E-value=1.3  Score=38.88  Aligned_cols=36  Identities=14%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~   42 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP   42 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence            357899999 556899999999999999998865443

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=91.24  E-value=1.4  Score=44.18  Aligned_cols=100  Identities=23%  Similarity=0.380  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC-----CCccEEEeCCHHHHHHHHHHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG-----GGRGMRLAKEPDEFVKLLQQAKSEA  257 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~-----gg~GV~~v~~~~el~~~~~~~~~~~  257 (313)
                      .+|...+++++.+|+++|++   ...+.+++.+.++.++     |-..-.     .-.||.+=.+..++.++++.+....
T Consensus       471 ~~~~e~~~~l~~~gi~~~~~---~~~~~~ea~~~a~~~~-----Kl~s~~i~hksev~gv~l~~~~~~v~~a~~~~~~~p  542 (598)
T COG1042         471 LDEPEAKELLEAYGIPVPAT---IASTLDEAVHIAESIG-----KLRSPDIDHKSEVGGVMLNRTADAVEKAADDILARP  542 (598)
T ss_pred             cCchhhhhHHHHhcCccccc---ccCCHHHHHHHHHHhh-----hccCCccchhhhccceeecCcHHHHHHHHHhHhccc
Confidence            47788899999999999998   7888999999888887     433222     2234444477889999988887651


Q ss_pred             HhcCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEee
Q 021372          258 AAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGE  295 (313)
Q Consensus       258 ~~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~  295 (313)
                         ..-..+++|++..  .|..+.+-.|. +|.++++++
T Consensus       543 ---a~i~g~lvq~m~~--~E~~vgv~~dp~fgp~i~~G~  576 (598)
T COG1042         543 ---ARIAGVLVQTMAK--LELIVGVKNDPTFGPLILFGE  576 (598)
T ss_pred             ---chhhhhhhHhhhh--ccceeeccCCCcchhHHHhcC
Confidence               2236789999988  77777777776 666665543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.24  E-value=0.79  Score=40.65  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=46.1

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc---CceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA---DESVCIGEAPSSQSYLLIPNVLSAAISR--  142 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a---d~~~~v~~~~~~~~~~~~~~l~~~~~~~--  142 (313)
                      .|++||+|++   .+|..+++.+.+.|++|++++.+.........+.   .....+.  -+..+..+++.+.+.+.+.  
T Consensus        10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~--~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533         10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLP--LDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEe--cCcCCHHHHHHHHHHHHHHcC
Confidence            5789999965   6999999999999999988865432111011111   1111121  1122234455565555442  


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      ++|+++-.-
T Consensus        88 ~ld~lv~nA   96 (258)
T PRK07533         88 RLDFLLHSI   96 (258)
T ss_pred             CCCEEEEcC
Confidence            589888543

>PRK09072 short chain dehydrogenase; Provisional

Probab=91.23  E-value=0.99  Score=39.93  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~   39 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA   39 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 57789999999999999999986543

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=91.21  E-value=0.41  Score=43.92  Aligned_cols=74  Identities=14%  Similarity=0.014  Sum_probs=51.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh----hhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL----HVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~----~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      .++|||+| +|.+|-+.+-+|.+.|+.|+++|.-.+....    ...+..  +.+.+.    .-+..|.+.|.++.+..+
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~----~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFV----EGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEE----EeccCCHHHHHHHHhhcC
Confidence            46899999 7778999999999999999999864443221    112222  212111    112466788888888899


Q ss_pred             CCEEe
Q 021372          144 CTMLH  148 (313)
Q Consensus       144 id~vi  148 (313)
                      +|.|+
T Consensus        78 fd~V~   82 (343)
T KOG1371|consen   78 FDAVM   82 (343)
T ss_pred             CceEE
Confidence            99998

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.20  E-value=3  Score=43.72  Aligned_cols=110  Identities=12%  Similarity=0.105  Sum_probs=65.9

Q ss_pred             ccEEEEEcCCHhHHHH-HHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRV-IRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v-~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +++|+|+|-|.+|... ++.|+++|++|++.|.......  ..+..  -.+..+       . ..+.+      .++|.|
T Consensus         4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~--~~L~~~gi~~~~g-------~-~~~~~------~~~d~v   67 (809)
T PRK14573          4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTV--EKLKAKGARFFLG-------H-QEEHV------PEDAVV   67 (809)
T ss_pred             cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHH--HHHHHCCCEEeCC-------C-CHHHc------CCCCEE
Confidence            4679999999999997 9999999999999875433221  12221  112121       1 11111      247888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-C-----------CH----HHHHHHHHHCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-G-----------DK----STARETMKNAGVP  198 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-~-----------DK----~~~~~~l~~~Gip  198 (313)
                      +...+....+..+.. +.+.|++++ ...+.+... .           -|    .....+|+++|..
T Consensus        68 V~SpgI~~~~p~~~~-a~~~gi~v~-~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~  132 (809)
T PRK14573         68 VYSSSISKDNVEYLS-AKSRGNRLV-HRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKKD  132 (809)
T ss_pred             EECCCcCCCCHHHHH-HHHCCCcEE-eHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence            876654445544444 457789887 455554322 2           23    3455677888764

>PRK09134 short chain dehydrogenase; Provisional

Probab=91.17  E-value=1.5  Score=38.72  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+.+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~   41 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYN   41 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3467899999 556899999999999999987653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.13  E-value=0.81  Score=40.26  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999 57789999999999999999886543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.13  E-value=1.2  Score=41.66  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+|.+|..+++.++.+|.+ |++++.+.........+. +..+  +  ....  ...+.+.+.....++|+++
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i--~--~~~~--~~~~~i~~~~~~~g~d~vi  250 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTV--N--SSGT--DPVEAIRALTGGFGADVVI  250 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE--c--CCCc--CHHHHHHHHhCCCCCCEEE
Confidence            57899999999999999999999996 777765544333333332 3322  2  1111  1234555555445799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..|
T Consensus       251 d~~g  254 (358)
T TIGR03451       251 DAVG  254 (358)
T ss_pred             ECCC
Confidence            7654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=91.11  E-value=0.59  Score=41.06  Aligned_cols=33  Identities=15%  Similarity=0.108  Sum_probs=28.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++|+|+| +|.+|..+++.+.+.|++|++++.++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999 56789999999999999999986544

>PLN02253 xanthoxin dehydrogenase

Probab=91.10  E-value=1.2  Score=39.84  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            57899999 5668999999999999999998654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=91.09  E-value=0.3  Score=46.22  Aligned_cols=36  Identities=8%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++..|+|+|+|+.|..++-+|.+.|++|.+++..+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            345689999999999999999999999999997653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=91.08  E-value=1.2  Score=39.20  Aligned_cols=34  Identities=12%  Similarity=0.083  Sum_probs=28.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.+.+.|+++++++.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999 5568999999999999999888644

>PRK08251 short chain dehydrogenase; Provisional

Probab=91.07  E-value=0.95  Score=39.52  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| ++.+|..+++.+.+.|++|++++.++
T Consensus         1 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~   36 (248)
T PRK08251          1 TRQKILITGASSGLGAGMAREFAAKGRDLALCARRT   36 (248)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            357899999 66689999999999999999886544

>PRK08589 short chain dehydrogenase; Validated

Probab=91.03  E-value=0.84  Score=40.77  Aligned_cols=33  Identities=12%  Similarity=0.059  Sum_probs=28.9

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            578999994 668999999999999999998655

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=91.01  E-value=0.87  Score=39.77  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            58899999 4678999999999999999988643

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B

Probab=91.01  E-value=1.2  Score=36.52  Aligned_cols=89  Identities=10%  Similarity=0.144  Sum_probs=48.1

Q ss_pred             cEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           72 EKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++.+++|.+..+..+.+.+.+   .|++++.+-++.. ...........+ +         .+.+.+.+.++++++|-|+
T Consensus        78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~-~~~~~~~~~~~~-l---------g~~~~l~~~~~~~~id~v~  146 (175)
T PF13727_consen   78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDP-SDRGPEIDGVPV-L---------GDLDDLPELVREHDIDEVI  146 (175)
T ss_dssp             EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-G-GGTT-EETTEEE-E-----------GGGHHHHHHHHT--EEE
T ss_pred             cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCch-hhccCcccCcee-E---------cCHHHHHHHHHhCCCCEEE
Confidence            445777777778777777766   6988887654332 211111222222 2         3467899999999999998


Q ss_pred             eccCcCccc--HHHHHHHHHcCCce
Q 021372          149 PGYGFLAEN--AVFVEMCREHGINF  171 (313)
Q Consensus       149 p~~g~~~e~--~~~~~~l~~~gi~~  171 (313)
                      .......+.  ..+.+.+++.++.+
T Consensus       147 ial~~~~~~~i~~ii~~~~~~~v~v  171 (175)
T PF13727_consen  147 IALPWSEEEQIKRIIEELENHGVRV  171 (175)
T ss_dssp             E--TTS-HHHHHHHHHHHHTTT-EE
T ss_pred             EEcCccCHHHHHHHHHHHHhCCCEE
Confidence            765322121  35667777778765

>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE

Probab=91.00  E-value=2.1  Score=41.32  Aligned_cols=88  Identities=17%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-------hcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-------LADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-------~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      .+|+.|.|....+..+.+.|.++|.+++++..+.........       ..+....++       ..+...+.+++++.+
T Consensus       300 gkrv~v~g~~~~~~~l~~~L~elG~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~v~~-------~~d~~e~~~~l~~~~  372 (429)
T cd03466         300 GRKAAIYGEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD-------GADFFDIESYAKELK  372 (429)
T ss_pred             CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCChHHHHHHHHHHHhcCCceEEEe-------CCCHHHHHHHHHhcC
Confidence            578999998878999999999999998666543322211111       122332221       235677888888888


Q ss_pred             CCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372          144 CTMLHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       144 id~vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      +|.++...       .......+.|++++
T Consensus       373 ~dliiG~s-------~~~~~a~~~~ip~~  394 (429)
T cd03466         373 IDVLIGNS-------YGRRIAEKLGIPLI  394 (429)
T ss_pred             CCEEEECc-------hhHHHHHHcCCCEE
Confidence            88888432       12234455677664

NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=90.96  E-value=1.4  Score=37.29  Aligned_cols=88  Identities=15%  Similarity=0.248  Sum_probs=61.5

Q ss_pred             ccEEEEEcCCHhHHHHH--HHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVI--RTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~--~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.++.|+|.|.+|+.++  .-.++.|++++.+. |.++........+  +.+         .+++.+...+++.+++..+
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~F-Dv~~~~VG~~~~~--v~V---------~~~d~le~~v~~~dv~iai  151 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAF-DVDPDKVGTKIGD--VPV---------YDLDDLEKFVKKNDVEIAI  151 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcCceEEEEe-cCCHHHhCcccCC--eee---------echHHHHHHHHhcCccEEE
Confidence            57899999999988877  45678899988765 3333344444444  222         4578999999999999777


Q ss_pred             eccCcCccc-HHHHHHHHHcCCcee
Q 021372          149 PGYGFLAEN-AVFVEMCREHGINFI  172 (313)
Q Consensus       149 p~~g~~~e~-~~~~~~l~~~gi~~~  172 (313)
                      .+.  ..++ ...++.+.+.|+.-+
T Consensus       152 LtV--Pa~~AQ~vad~Lv~aGVkGI  174 (211)
T COG2344         152 LTV--PAEHAQEVADRLVKAGVKGI  174 (211)
T ss_pred             EEc--cHHHHHHHHHHHHHcCCceE
Confidence            653  2233 456778888888765

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.95  E-value=0.52  Score=37.72  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~  103 (313)
                      .+++||+|+|..++.++.+|.++|++ ++++..+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            68999999999999999999999999 6666543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.95  E-value=1.1  Score=39.02  Aligned_cols=34  Identities=6%  Similarity=0.053  Sum_probs=29.4

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999995 8899999999999999998886554

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=90.94  E-value=2.2  Score=41.46  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             ccEEEEEcCCH----hHHHHHHHHHHcCC--cEEEEecCCCcchh---hhh------hcCceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVANRGE----IAVRVIRTAHEMGI--PCVAVYSTIDKDAL---HVK------LADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~g~----~a~~v~~al~~~G~--~vi~v~~~~~~~~~---~~~------~ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      .++|.|+|.+.    .+..+++.+++.||  +|+.+++......-   +..      -.|-.+..-|      ......+
T Consensus         7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp------~~~~~~~   80 (447)
T TIGR02717         7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVP------AKYVPQV   80 (447)
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecC------HHHHHHH
Confidence            47899999743    69999999999998  68878554321110   000      1122221111      1334566


Q ss_pred             HHHHHhcCCCEEeecc-CcC--cc-----cHHHHHHHHHcCCceeCCCH
Q 021372          136 LSAAISRGCTMLHPGY-GFL--AE-----NAVFVEMCREHGINFIGPNP  176 (313)
Q Consensus       136 ~~~~~~~~id~vip~~-g~~--~e-----~~~~~~~l~~~gi~~~g~~~  176 (313)
                      ++.|.+.++..++... |+-  .+     ...+.+..++.|+.++||+-
T Consensus        81 l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc  129 (447)
T TIGR02717        81 VEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNC  129 (447)
T ss_pred             HHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCe
Confidence            6667778888776532 221  11     13566777788999998764

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK06185 hypothetical protein; Provisional

Probab=90.93  E-value=0.36  Score=45.82  Aligned_cols=35  Identities=6%  Similarity=0.052  Sum_probs=31.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +...|+|+|+|..|..++..|.+.|++|++++..+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            45789999999999999999999999999998654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.86  E-value=1.3  Score=39.01  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=28.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      ...+|+|+|.|..|-.++++|.+.|+ +++++|.+
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999 55666544

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08303 short chain dehydrogenase; Provisional

Probab=90.80  E-value=0.94  Score=41.51  Aligned_cols=36  Identities=14%  Similarity=0.045  Sum_probs=29.5

Q ss_pred             cccccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        68 ~~~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ....|++||+|+ +.+|..+++.+.+.|++|++++.+
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            333588999995 458999999999999999988654

>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed

Probab=90.78  E-value=0.89  Score=42.64  Aligned_cols=34  Identities=18%  Similarity=0.132  Sum_probs=28.3

Q ss_pred             ccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++|+|.|+|..     |+.+++.|++.|++|..+.++.
T Consensus         1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~   39 (352)
T PRK12446          1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQ   39 (352)
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence            468999997764     7899999999999999997544

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=90.77  E-value=1.5  Score=38.79  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=29.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~   44 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG   44 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999 567899999999999999999865543

>PRK07023 short chain dehydrogenase; Provisional

Probab=90.75  E-value=1.3  Score=38.65  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=28.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~   35 (243)
T PRK07023          2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSR   35 (243)
T ss_pred             ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCc
Confidence            4799999 56689999999999999999886543

>PRK06126 hypothetical protein; Provisional

Probab=90.74  E-value=0.39  Score=47.67  Aligned_cols=37  Identities=11%  Similarity=0.219  Sum_probs=32.2

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++..+|+|+|+|+.|+.++-.|.+.|++|++++..+
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~   40 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKD   40 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3445789999999999999999999999999997543

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=90.74  E-value=1.3  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=28.1

Q ss_pred             ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .|++||+|+   +.+|..+++.+.+.|++|++++.
T Consensus         7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecC
Confidence            578999997   47999999999999999998753

>PRK06753 hypothetical protein; Provisional

Probab=90.73  E-value=0.4  Score=44.92  Aligned_cols=34  Identities=15%  Similarity=0.058  Sum_probs=30.5

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++|+|+|+|+.|+.++..|++.|++|+++...+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3799999999999999999999999999976554

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=90.73  E-value=1.1  Score=39.22  Aligned_cols=34  Identities=21%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~   46 (247)
T PRK08945         12 DRIILVTGAGDGIGREAALTYARHGATVILLGRTE   46 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence            57899999 66689999999999999999987554

>PRK07831 short chain dehydrogenase; Provisional

Probab=90.70  E-value=0.92  Score=40.10  Aligned_cols=34  Identities=26%  Similarity=0.219  Sum_probs=28.8

Q ss_pred             ccEEEEEcC-C-HhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-G-EIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g-~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+ | .+|..+++.+.+.|++|++++.+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999996 4 699999999999999998876543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=90.68  E-value=1.8  Score=40.46  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      ...+|+|+|.|.+|..+++.|.+.|+ +++++|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            46789999999999999999999999 788887653

>PRK09620 hypothetical protein; Provisional

Probab=90.67  E-value=1  Score=39.66  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             ccEEEEEcC-----------------CHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANR-----------------GEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~-----------------g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|||++|                 |.+|..++++|.++|++|++++.
T Consensus         3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g   51 (229)
T PRK09620          3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG   51 (229)
T ss_pred             CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            467888765                 56799999999999999999864

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=90.66  E-value=4  Score=38.28  Aligned_cols=71  Identities=31%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHH---hcCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAI---SRGC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~---~~~i  144 (313)
                      .+.|||+| +|..|..+++-|+..| ..|+++.+.. .......+ +|+.+  +       |.+ +++.+.++   ..++
T Consensus       158 g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e-~~~l~k~lGAd~vv--d-------y~~-~~~~e~~kk~~~~~~  226 (347)
T KOG1198|consen  158 GKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKE-KLELVKKLGADEVV--D-------YKD-ENVVELIKKYTGKGV  226 (347)
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccc-hHHHHHHcCCcEee--c-------CCC-HHHHHHHHhhcCCCc
Confidence            56899998 5568999999999999 5555554433 33332332 44444  2       333 33344333   4479


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |+|+=..+
T Consensus       227 DvVlD~vg  234 (347)
T KOG1198|consen  227 DVVLDCVG  234 (347)
T ss_pred             cEEEECCC
Confidence            99996543

>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T

Probab=90.66  E-value=1.5  Score=40.97  Aligned_cols=51  Identities=25%  Similarity=0.349  Sum_probs=37.8

Q ss_pred             EEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhc---CCCCcEEEeeccCC
Q 021372          224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAA---FGNDGVYLEKYVQN  274 (313)
Q Consensus       224 ~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~---~~~~~vlvEe~I~G  274 (313)
                      +|||...|.-|.||..+.+.+|+...-++-+..-...   ..-..+||||=|.-
T Consensus       260 ViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T  313 (403)
T TIGR02049       260 VIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYT  313 (403)
T ss_pred             EEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcce
Confidence            6899999999999999999999988665544322111   11257999987766

ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.

>PRK06198 short chain dehydrogenase; Provisional

Probab=90.66  E-value=1.2  Score=39.12  Aligned_cols=34  Identities=18%  Similarity=0.164  Sum_probs=28.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIP-CVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~-vi~v~~~  103 (313)
                      ..++++|+| ++.+|..+++.+.+.|++ |++++.+
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            357899999 566899999999999999 8887654

>PRK05717 oxidoreductase; Validated

Probab=90.60  E-value=0.81  Score=40.30  Aligned_cols=34  Identities=15%  Similarity=0.009  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999 56789999999999999999986443

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.60  E-value=1.1  Score=39.68  Aligned_cols=35  Identities=9%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence            357899999 46689999999999999999886543

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.59  E-value=1.2  Score=38.95  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~   42 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL   42 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999987543

>PRK06128 oxidoreductase; Provisional

Probab=90.55  E-value=1.3  Score=40.31  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=28.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|++||+| ++.+|..+++.+.+.|++|++.+.+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            358899999 5668999999999999999887543

>PRK05867 short chain dehydrogenase; Provisional

Probab=90.55  E-value=0.99  Score=39.67  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHL   43 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999995 6689999999999999999886543

>PRK06949 short chain dehydrogenase; Provisional

Probab=90.53  E-value=1.2  Score=39.18  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~   43 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV   43 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58899999 57799999999999999999886544

>PRK06475 salicylate hydroxylase; Provisional

Probab=90.52  E-value=0.4  Score=45.61  Aligned_cols=34  Identities=12%  Similarity=0.103  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|..|+.++.+|++.|++|.++...+
T Consensus         2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~   35 (400)
T PRK06475          2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ   35 (400)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            4789999999999999999999999999997543

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=90.51  E-value=0.46  Score=43.57  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+|+|+|+|+.|..++..|++.|++|++++..+.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            4699999999999999999999999999986554

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.49  E-value=0.39  Score=46.51  Aligned_cols=38  Identities=18%  Similarity=0.153  Sum_probs=33.1

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+|.++|.|+|+|+.|+..++.|.+.|++++++....+
T Consensus         3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    3 MMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             cCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            34678999999999999999999999999999865443

>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function

Probab=90.48  E-value=0.3  Score=45.33  Aligned_cols=68  Identities=18%  Similarity=0.251  Sum_probs=39.6

Q ss_pred             HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHH-HHHHHHHHHHHHHHhcCCCCcEEEe
Q 021372          193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD-EFVKLLQQAKSEAAAAFGNDGVYLE  269 (313)
Q Consensus       193 ~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~-el~~~~~~~~~~~~~~~~~~~vlvE  269 (313)
                      ++.-++.++||  .+.+.++.....+++. -+|+||..|.+|+|+.+-.+.. |.++.++++...      ...|+.|
T Consensus       262 eellL~~VpT~--~cg~~~~~~~Vl~~l~-~lvvKp~~g~gg~~~~~G~~~s~e~~~~~~~I~~~------P~~yVAQ  330 (330)
T PF04174_consen  262 EELLLPNVPTW--WCGDPEDREYVLANLD-ELVVKPADGYGGKGVYIGPKLSAERRALRAEILAR------PHRYVAQ  330 (330)
T ss_dssp             S--SSEE---E--ETTSHHHHHHHHHSGG-GEEEEE--------EEEGGG--HHHHHHHHHHHHS------GGGEEEE
T ss_pred             CCcccCCCCcE--eCCCHHHHHHHHhchh-hcEEEecCCCCCCcceeCCcCCHHHHHHHHHHHhC------ccCCccC
Confidence            45667777886  8889999888888876 6999999999999998843322 777777777653      2467765

It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.48  E-value=1.7  Score=42.74  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=52.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|.|.+|+..++.|+..|++|++.|..+..... .......+...       ....+.+      .++|.|+..
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~-l~~~g~~~~~~-------~~~~~~l------~~~D~VV~S   77 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP-HAERGVATVST-------SDAVQQI------ADYALVVTS   77 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHhCCCEEEcC-------cchHhHh------hcCCEEEEC
Confidence            478999999999999999999999999997643221111 01001111111       0111111      246888876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeC
Q 021372          151 YGFLAENAVFVEMCREHGINFIG  173 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g  173 (313)
                      .|....+. ....+.+.|+++++
T Consensus        78 pGi~~~~p-~~~~a~~~gi~v~~   99 (488)
T PRK03369         78 PGFRPTAP-VLAAAAAAGVPIWG   99 (488)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEee
Confidence            65444443 34445677888874

>PRK06847 hypothetical protein; Provisional

Probab=90.47  E-value=0.48  Score=44.39  Aligned_cols=34  Identities=18%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|+|+|+|+.|+.++..|++.|++|++++...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            5789999999999999999999999999997543

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=90.46  E-value=2.9  Score=38.21  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEE-EEecC--CCcch---hhhh-----h---cCceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCV-AVYST--IDKDA---LHVK-----L---ADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi-~v~~~--~~~~~---~~~~-----~---ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      ..||+|.| .+..+..+++.+.+.|++.+ .|++.  .....   .+..     .   .|-.+..-|      ......+
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp------~~~v~~~   81 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVP------PPFAADA   81 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcC------HHHHHHH
Confidence            56899999 67789999999999999733 45433  11110   0000     0   232222111      1223455


Q ss_pred             HHHHHhcCCCEEee-ccCcCccc-HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          136 LSAAISRGCTMLHP-GYGFLAEN-AVFVEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       136 ~~~~~~~~id~vip-~~g~~~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                      ++.|.+.++..++. ..|+-.++ ..+.+..++.|++++||+---+-...++
T Consensus        82 l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~~~~~  133 (291)
T PRK05678         82 ILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIITPGEC  133 (291)
T ss_pred             HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccccccc
Confidence            55566678876544 34443221 2677888899999999987766555554

>PRK00124 hypothetical protein; Validated

Probab=90.46  E-value=8.6  Score=31.47  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +|+|=+ +=+.=-.+.+.+++.|++++++.+..........-.-+.+.++..++.-+    ..|++.+..  -|.|+.  
T Consensus         2 ~I~VDADACPVk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD----~~Iv~~~~~--gDiVIT--   73 (151)
T PRK00124          2 KIYVDADACPVKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAAD----NEIVQLAEK--GDIVIT--   73 (151)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHH----HHHHHhCCC--CCEEEe--
Confidence            455555 33445567889999999999987433222111111123344542222111    255555543  488874  


Q ss_pred             CcCcccHHHHHHHHHcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          152 GFLAENAVFVEMCREHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                          .+..++..+-..|..++.|     +.+.|.....--.+.+-+++.|..+
T Consensus        74 ----~Di~LAa~~l~Kga~vl~prG~~yt~~nI~~~L~~R~~~~~lR~~G~~t  122 (151)
T PRK00124         74 ----QDYGLAALALEKGAIVLNPRGYIYTNDNIDQLLAMRDLMATLRRSGIRT  122 (151)
T ss_pred             ----CCHHHHHHHHHCCCEEECCCCcCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence                4456677777778766644     3556666666666667777888765

>PRK08278 short chain dehydrogenase; Provisional

Probab=90.45  E-value=1.4  Score=39.34  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGANIVIAAKTA   40 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            57899999 56689999999999999999887543

>PRK05865 hypothetical protein; Provisional

Probab=90.42  E-value=4.1  Score=42.77  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+| +|.+|..+++.|.+.|++|++++.......   ...-..+..       +..+.+.+.++++  ++|.|+-.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~---~~~v~~v~g-------DL~D~~~l~~al~--~vD~VVHl   68 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSW---PSSADFIAA-------DIRDATAVESAMT--GADVVAHC   68 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhc---ccCceEEEe-------eCCCHHHHHHHHh--CCCEEEEC
Confidence            3799999 588999999999999999998864321110   000112222       2344556666554  58988754


Q ss_pred             cCcCcc----c----HHHHHHHHHcCCc-eeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372          151 YGFLAE----N----AVFVEMCREHGIN-FIGPNPDSIRIMGDKSTARETMKNAGVPTV  200 (313)
Q Consensus       151 ~g~~~e----~----~~~~~~l~~~gi~-~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p  200 (313)
                      -+....    +    ..+.+.+.+.++. ++..+...      |...-+++.+.|+++.
T Consensus        69 Aa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~------K~aaE~ll~~~gl~~v  121 (854)
T PRK05865         69 AWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH------QPRVEQMLADCGLEWV  121 (854)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH------HHHHHHHHHHcCCCEE
Confidence            321111    1    1344556666652 32222221      7777788888887763

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=90.34  E-value=1.2  Score=41.39  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|||+| +|.+|..+++.|.+.|++|++++.+
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~   43 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRD   43 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5779999999999999999987543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=90.29  E-value=0.47  Score=45.07  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |..+|+|+|+|+.|...+..|++.|++|++++..+
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS   35 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence            45789999999999999999999999999997654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=90.29  E-value=0.91  Score=40.02  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~   46 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA   46 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999 56789999999999999999886543

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.23  E-value=2.1  Score=41.88  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|-|.+|+.+++.|++.|.+|++.+.+....... ..+......+..      ....+.+      .++|.|+.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~------~~~d~vV~   75 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVET------EASAQRL------AAFDVVVK   75 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeC------CCChHHc------cCCCEEEE
Confidence            5789999999999999999999999999987543322111 122111111100      1111222      34788887


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHH-HHH-hC---------------CH----HHHHHHHHHCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDS-IRI-MG---------------DK----STARETMKNAGVPT  199 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~-i~~-~~---------------DK----~~~~~~l~~~Gip~  199 (313)
                      ..+....+. ....+.+.|+++++ ..+. +.. ..               -|    ....++|+.+|.++
T Consensus        76 SpgI~~~~p-~~~~a~~~~i~i~~-~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~  144 (468)
T PRK04690         76 SPGISPYRP-EALAAAARGTPFIG-GTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRT  144 (468)
T ss_pred             CCCCCCCCH-HHHHHHHcCCcEEE-HHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence            665443443 34445678888883 5554 322 21               12    35567888888654

>PRK07109 short chain dehydrogenase; Provisional

Probab=90.23  E-value=1.2  Score=41.42  Aligned_cols=34  Identities=9%  Similarity=0.140  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~   42 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGE   42 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999886543

>PRK12827 short chain dehydrogenase; Provisional

Probab=90.19  E-value=2.2  Score=37.04  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +.+++||+| +|.+|..+++.|.+.|++|++++.
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            357899999 667899999999999999988753

>PLN02214 cinnamoyl-CoA reductase

Probab=90.16  E-value=1.5  Score=40.67  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++|||+|+ |.+|..+++.|.+.|++|+++..+.
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~   44 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNP   44 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCc
Confidence            3678999995 7899999999999999998876443

>PRK07062 short chain dehydrogenase; Provisional

Probab=90.16  E-value=1.2  Score=39.32  Aligned_cols=35  Identities=11%  Similarity=0.104  Sum_probs=29.4

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+|+ +.+|..+++.+.+.|++|++++.+..
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~   43 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEE   43 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            578999994 56899999999999999998865543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=90.04  E-value=0.49  Score=44.82  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |..+|+|+|+|+.|+.++..|++.|++|++++..+
T Consensus         1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~   35 (392)
T PRK08243          1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS   35 (392)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            35789999999999999999999999999997654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.01  E-value=1.2  Score=40.08  Aligned_cols=74  Identities=16%  Similarity=0.193  Sum_probs=44.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||.|+|.+|+..++.++.+|.+ |++++.++........+....+ ++.    .+  ..+.+.+.....++|.++-
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~-i~~----~~--~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL-AEP----EV--LAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe-cCc----hh--hHHHHHHHhCCCCCCEEEE
Confidence            57899999999999999999999998 7776544333332222222222 221    01  1233444333456899985


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      ..
T Consensus       194 ~~  195 (280)
T TIGR03366       194 FS  195 (280)
T ss_pred             CC
Confidence            44

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK06181 short chain dehydrogenase; Provisional

Probab=89.99  E-value=1.4  Score=38.92  Aligned_cols=33  Identities=9%  Similarity=0.078  Sum_probs=28.1

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+|+ |.+|..+++.+.+.|++|++++.+.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~   35 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNE   35 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57999994 7789999999999999999986543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=89.98  E-value=1.4  Score=38.98  Aligned_cols=33  Identities=21%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3799999 56689999999999999999886543

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=89.97  E-value=0.51  Score=45.38  Aligned_cols=35  Identities=11%  Similarity=0.047  Sum_probs=31.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |+++|+|+|+|..|...+.+|.++|++|.+++..+
T Consensus         1 ~~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp   35 (436)
T PRK05335          1 MMKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRP   35 (436)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence            46789999999999999999999999999997544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=89.96  E-value=0.77  Score=38.56  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ...++|+|+|-|.+|+.+++.|+..|.+|+.++....
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~   70 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK   70 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence            3478999999999999999999999999999976544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=89.96  E-value=1.4  Score=38.96  Aligned_cols=32  Identities=9%  Similarity=0.285  Sum_probs=27.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      ..|++||+| ++.+|..+++.+.+.|++|+++.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~   39 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTY   39 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            468899999 45689999999999999998774

>PRK06197 short chain dehydrogenase; Provisional

Probab=89.90  E-value=1.1  Score=40.85  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=28.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|||+| ++.+|..+++.+.+.|++|++++.+
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999 5668999999999999999888654

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.89  E-value=1.4  Score=39.25  Aligned_cols=34  Identities=6%  Similarity=0.097  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999 46789999999999999999886543

>PRK10637 cysG siroheme synthase; Provisional

Probab=89.85  E-value=1.5  Score=42.68  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+|+|..|.+=++.|.+.|.+|+++.+.-
T Consensus        12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~   45 (457)
T PRK10637         12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAF   45 (457)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            6899999999999988899999999999996543

>PRK08309 short chain dehydrogenase; Provisional

Probab=89.84  E-value=3.3  Score=34.82  Aligned_cols=32  Identities=19%  Similarity=0.085  Sum_probs=26.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ++++|+|+...+..+++.|.+.|++|++++.+
T Consensus         1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~   32 (177)
T PRK08309          1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARR   32 (177)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCcCEEEEEECC
Confidence            36899997777777999999999999988644

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=89.84  E-value=4.8  Score=35.96  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEe
Q 021372           72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVY  101 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~  101 (313)
                      .||+|+|. |.+|..+++.+.+. +++++.+.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~   33 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV   33 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            58999997 99999999999874 78877654

>PRK06125 short chain dehydrogenase; Provisional

Probab=89.83  E-value=0.85  Score=40.25  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+ +.+|..+++.+.+.|++|++++.+.
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~   41 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA   41 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999995 6689999999999999999886543

>PRK06484 short chain dehydrogenase; Validated

Probab=89.82  E-value=1.6  Score=42.88  Aligned_cols=35  Identities=9%  Similarity=0.029  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~  303 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDA  303 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368899999 55689999999999999999986543

>PRK08339 short chain dehydrogenase; Provisional

Probab=89.77  E-value=1.3  Score=39.47  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=28.8

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+|+ +.+|..+++.|.+.|++|++++.+.
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~   42 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNE   42 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999994 5689999999999999999886543

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=89.74  E-value=0.93  Score=39.96  Aligned_cols=32  Identities=9%  Similarity=0.064  Sum_probs=27.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .|++||+| ++.+|+.+++.+.+.|++|++++.
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~   40 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGV   40 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            57899999 556899999999999999998754

>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.71  E-value=9.8  Score=30.98  Aligned_cols=104  Identities=12%  Similarity=0.131  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHH
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFV  161 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~  161 (313)
                      .=-.+.+.+.++|++|++|.+...... .+......+ +++..+.-    -.+|++.+  +.-|.|+.      .+.-++
T Consensus        13 Vk~~i~r~A~r~~~~v~~Van~~~~~~-~~~~i~~v~-V~~g~Daa----D~~Iv~~a--~~gDlVVT------~Di~LA   78 (150)
T COG1671          13 VKDEIYRVAERMGLKVTFVANFPHRVP-PSPEIRTVV-VDAGFDAA----DDWIVNLA--EKGDLVVT------ADIPLA   78 (150)
T ss_pred             hHHHHHHHHHHhCCeEEEEeCCCccCC-CCCceeEEE-ecCCcchH----HHHHHHhC--CCCCEEEE------CchHHH
Confidence            445678999999999999986655432 333344333 43222211    23566666  34677874      445677


Q ss_pred             HHHHHcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          162 EMCREHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       162 ~~l~~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ..+-..|..+++|     +.+.|....+...+...|++.|..+
T Consensus        79 ~~ll~kg~~v~~prGr~y~~~nI~~~L~~R~~~~~lR~~G~~~  121 (150)
T COG1671          79 SLLLDKGAAVLNPRGRLYTEENIGERLAMRDFMAKLRRQGKKT  121 (150)
T ss_pred             HHHHhcCCEEECCCCcccCHhHHHHHHHHHHHHHHHHHhcccc
Confidence            7777889888765     3556677777777777788888764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=89.70  E-value=0.92  Score=45.36  Aligned_cols=34  Identities=12%  Similarity=0.165  Sum_probs=30.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|+|+.|+..+..|+++|++|++++..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            3689999999999999999999999999998743

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=89.70  E-value=0.51  Score=46.94  Aligned_cols=39  Identities=13%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +..++...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus        18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            344456789999999999999999999999999997554

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=89.66  E-value=2.8  Score=37.68  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=57.5

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +||.|+|.|.+|..+++.+.+.  +++++.+. +.+... ...+++..- .      ..+.+.+.++     .++|+|+.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~-a~~~a~~~~-~------~~~~~~~ell-----~~~DvVvi   67 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFY-DRNLEK-AENLASKTG-A------KACLSIDELV-----EDVDLVVE   67 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEE-CCCHHH-HHHHHHhcC-C------eeECCHHHHh-----cCCCEEEE
Confidence            4899999999999999998876  46655443 333221 112222110 0      1133444543     35899885


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHH---HHHHHHHHCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKS---TARETMKNAGVP  198 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~---~~~~~l~~~Gip  198 (313)
                      .... .....+...+.+.|..++.-+.-+   +.|+.   .+.+.+++.|..
T Consensus        68 ~a~~-~~~~~~~~~al~~Gk~Vvv~s~gA---l~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         68 CASV-NAVEEVVPKSLENGKDVIIMSVGA---LADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             cCCh-HHHHHHHHHHHHcCCCEEEEchHH---hcCHHHHHHHHHHHHHcCCE
Confidence            4311 111233333345677775333222   23443   455667777743

>PRK06101 short chain dehydrogenase; Provisional

Probab=89.66  E-value=0.74  Score=40.22  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~   35 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQ   35 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36799999 66689999999999999999886543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.63  E-value=1.5  Score=38.23  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            47899999 666899999999999999987643

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=89.60  E-value=0.95  Score=41.01  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             EEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           74 ILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        74 ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |||+| .|.+|..+.+.|. -+++|+.++...               ++       ..+.+.+.+++++.++|+|+-.
T Consensus         3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~D-------itd~~~v~~~i~~~~PDvVIn~   57 (281)
T COG1091           3 ILITGANGQLGTELRRALP-GEFEVIATDRAE---------------LD-------ITDPDAVLEVIRETRPDVVINA   57 (281)
T ss_pred             EEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------cc-------ccChHHHHHHHHhhCCCEEEEC
Confidence            99999 7778999999998 678888874321               21       3567789999999999999975

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.59  E-value=1.1  Score=40.24  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=27.4

Q ss_pred             ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .|++||+|+   +.+|+.+++.+.+.|++|++++
T Consensus        10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~   43 (272)
T PRK08159         10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTY   43 (272)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence            578999997   4699999999999999998875

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=89.52  E-value=0.56  Score=44.62  Aligned_cols=33  Identities=15%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+|+|||+|..|..++..|.+.|.+|++++...
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            689999999999999999999999999997653

>PRK05884 short chain dehydrogenase; Provisional

Probab=89.52  E-value=1.6  Score=37.74  Aligned_cols=32  Identities=13%  Similarity=0.142  Sum_probs=27.3

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |++|+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~   34 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARR   34 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            689998 46789999999999999999886543

>PRK08862 short chain dehydrogenase; Provisional

Probab=89.48  E-value=1.7  Score=37.79  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=29.0

Q ss_pred             ccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRG-EIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+|++ .+|..+++.+.+.|++|++++.+..
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5789999944 4899999999999999998865443

>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN

Probab=89.47  E-value=2.6  Score=40.75  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .+++.|.+.......+++.+.++|.++..+......... .......+.         ..|...+.+.+++.++|.++..
T Consensus       311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~~~~~~~~---------~~D~~~l~~~i~~~~~dliig~  380 (432)
T TIGR01285       311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLL-QKLPVETVV---------IGDLEDLEDLACAAGADLLITN  380 (432)
T ss_pred             CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHH-HhCCcCcEE---------eCCHHHHHHHHhhcCCCEEEEC
Confidence            478999988888899999999999999877655433322 222222221         1355678888888899999854


Q ss_pred             cCcCcccHHHHHHHHHcCCcee
Q 021372          151 YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .       .-..+..++|+|++
T Consensus       381 s-------~~k~~A~~l~ip~i  395 (432)
T TIGR01285       381 S-------HGRALAQRLALPLV  395 (432)
T ss_pred             c-------chHHHHHHcCCCEE
Confidence            2       11234456777775

This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=89.43  E-value=1.9  Score=39.05  Aligned_cols=74  Identities=15%  Similarity=0.034  Sum_probs=44.1

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC---ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad---~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ||||+| .|.+|..+++.|.+.|++|++++..............   ....+.     -+..+.+.+.++++..++|.|+
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVE-----GDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEE-----CCCCCHHHHHHHHHhCCCcEEE
Confidence            588998 6779999999999999999887532111110000000   111111     1234556677777666799888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        76 ~~a   78 (328)
T TIGR01179        76 HFA   78 (328)
T ss_pred             ECc
Confidence            543

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07775 short chain dehydrogenase; Provisional

Probab=89.42  E-value=1.9  Score=38.50  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=29.1

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +.++++||+| ++.+|..+++.|.+.|++|+++..+
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~   43 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARR   43 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3357899999 5678999999999999998887643

>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=0.29  Score=46.68  Aligned_cols=68  Identities=12%  Similarity=0.061  Sum_probs=46.7

Q ss_pred             HHhCCHHHHHHHHH-HCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHH
Q 021372          180 RIMGDKSTARETMK-NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKL  249 (313)
Q Consensus       180 ~~~~DK~~~~~~l~-~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~  249 (313)
                      +...|=..|.+++- ++.+ .|.+| .+.....+..+..+...-++++||..|..|.|+++++|..+..++
T Consensus       186 kd~Lsl~~mqkifpeey~f-yp~sw-~lPa~l~df~a~~~~~KrtfivkpDsgaqg~giylisDir~~g~~  254 (565)
T KOG2158|consen  186 KDILDLLEMQKIFPEEYMF-YPTSW-RLPAPLCDFPASTEIMKRTFIVKPDSGAQGSGIYLISDIREKGEY  254 (565)
T ss_pred             HHHHhHHHHHhcChHHhcC-CCccc-cCchHHHHHHHHHHHhcccEEECCCCCCCCcceeeechhhhhhHH
Confidence            44444333444442 3333 34555 577778888888887888999999999999999999776655543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.37  E-value=1.6  Score=37.71  Aligned_cols=35  Identities=11%  Similarity=0.070  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999886543

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.34  E-value=1.5  Score=39.54  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      ...+|+|+|.|..|-.++++|.+.|+ +++++|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35789999999999999999999996 56777654

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.32  E-value=1.9  Score=37.59  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| +|.+|+.+++.+.+.|++|+++.
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~   35 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNY   35 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            46899999 56689999999999999987653

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=89.24  E-value=1.3  Score=41.42  Aligned_cols=91  Identities=20%  Similarity=0.208  Sum_probs=53.9

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEE-EecCCCcchhhhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVA-VYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~-v~~~~~~~~~~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +|+|+|.|++|+-.+..++.+|...++ ++.+++....... .....+ ..+  ..+  .....+.++....++|.++-.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~-~~~--~~~--~~~~~~~~~t~g~g~D~vie~  245 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV-VNP--SED--DAGAEILELTGGRGADVVIEA  245 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe-ecC--ccc--cHHHHHHHHhCCCCCCEEEEC
Confidence            899999999999999999999976554 4545555555544 333333 221  111  223444455545679999976


Q ss_pred             cCcCcccHHHHHHHHHcC
Q 021372          151 YGFLAENAVFVEMCREHG  168 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~g  168 (313)
                      .|...-.....+++...|
T Consensus       246 ~G~~~~~~~ai~~~r~gG  263 (350)
T COG1063         246 VGSPPALDQALEALRPGG  263 (350)
T ss_pred             CCCHHHHHHHHHHhcCCC
Confidence            652211123444444444

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=89.22  E-value=1.3  Score=38.92  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~   43 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITA   43 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence            57899999 56689999999999999999886543

>PRK09242 tropinone reductase; Provisional

Probab=89.22  E-value=1.8  Score=38.08  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~   43 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDA   43 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            57899999 46789999999999999999886543

>PRK12937 short chain dehydrogenase; Provisional

Probab=89.19  E-value=1.9  Score=37.47  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=27.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.+.+.|++++++..
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            57899999 577899999999999999887753

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=89.13  E-value=0.62  Score=47.42  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=32.2

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+..+|+|+|+|..|+.++.+|++.|++|.++..++
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            446789999999999999999999999999997643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.13  E-value=1.6  Score=40.91  Aligned_cols=75  Identities=21%  Similarity=0.181  Sum_probs=46.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+|.+|..+++.++.+|. +|++++.++........+. +..+  +  ...  ....+.+.++... ++|+++
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~--~~~--~~~~~~i~~~~~~-g~d~vi  264 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATV--N--AGD--PNAVEQVRELTGG-GVDYAF  264 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEe--C--CCc--hhHHHHHHHHhCC-CCCEEE
Confidence            5789999999999999999999999 5887765544433333332 3222  2  111  1123444444333 799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       265 d~~G  268 (371)
T cd08281         265 EMAG  268 (371)
T ss_pred             ECCC
Confidence            6543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=89.10  E-value=1.7  Score=37.84  Aligned_cols=33  Identities=18%  Similarity=0.170  Sum_probs=29.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEe
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+.++|+|.|-|..|..+++.|.+.|.+++.+.
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vs   53 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVS   53 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            457899999999999999999999999888765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase

Probab=89.08  E-value=7.2  Score=37.83  Aligned_cols=67  Identities=18%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEcc--CCCCC----CCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG--EAPSS----QSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~--~~~~~----~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      -..+++.|.+.|++|.++..+.........  ...+.+.  +.+..    ..+.....+..++++.++|+|+...
T Consensus        80 ~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~  152 (465)
T PLN02871         80 FQNFIRYLREMGDEVLVVTTDEGVPQEFHG--AKVIGSWSFPCPFYQKVPLSLALSPRIISEVARFKPDLIHASS  152 (465)
T ss_pred             HHHHHHHHHHCCCeEEEEecCCCCCccccC--ceeeccCCcCCccCCCceeeccCCHHHHHHHHhCCCCEEEECC
Confidence            467889999999999999765432111000  0000000  00000    0111223677888889999998643

>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function

Probab=89.06  E-value=10  Score=30.26  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHH
Q 021372           86 VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCR  165 (313)
Q Consensus        86 v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~  165 (313)
                      +++.+++.|++|+++.+....... ..+ .+.+.++...+.-+    ..|++.++  .-|.|+.      .+..++..+-
T Consensus         2 i~~~a~r~~i~vi~Van~~h~~~~-~~~-~~~i~Vd~g~DaaD----~~I~~~~~--~gDiVIT------qDigLA~~~l   67 (130)
T PF02639_consen    2 IIRVAKRYGIPVIFVANYSHRLPR-SPY-VEMIVVDSGFDAAD----FYIVNHAK--PGDIVIT------QDIGLASLLL   67 (130)
T ss_pred             HHHHHHHHCCEEEEEeCCCccCCC-CCC-eEEEEECCCCChHH----HHHHHcCC--CCCEEEE------CCHHHHHHHH
Confidence            678999999999999755433322 122 23444543222221    24555553  3677874      4456777777


Q ss_pred             HcCCceeCC-----CHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh
Q 021372          166 EHGINFIGP-----NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL  220 (313)
Q Consensus       166 ~~gi~~~g~-----~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l  220 (313)
                      ..|..++.|     +.+.|....+.-.+.+-+++.|..+--.   ..-+.++-..|+..+
T Consensus        68 ~Kga~vl~~rG~~yt~~nI~~~L~~R~~~~~lR~~G~~~~gp---k~~~~~d~~~F~~~L  124 (130)
T PF02639_consen   68 AKGAYVLNPRGKEYTKENIDELLAMRHLMAKLRRAGKRTKGP---KKFTKKDRQRFANAL  124 (130)
T ss_pred             HCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHHHH
Confidence            777777643     4556666777777777788888854321   233455555555543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=89.01  E-value=2.7  Score=36.34  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=28.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.+.+.|++|+++..+.
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~   39 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASS   39 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999 56789999999999999997776443

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=88.99  E-value=1.4  Score=38.79  Aligned_cols=32  Identities=13%  Similarity=0.090  Sum_probs=27.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            57899999 556899999999999999988753

>PLN02740 Alcohol dehydrogenase-like

Probab=88.96  E-value=2  Score=40.57  Aligned_cols=77  Identities=10%  Similarity=0.098  Sum_probs=47.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|.|.+|..+++.++.+|. +|++++.+.........+- +..+  +.  ...+....+.+.++... ++|+++
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i--~~--~~~~~~~~~~v~~~~~~-g~dvvi  273 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFI--NP--KDSDKPVHERIREMTGG-GVDYSF  273 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEE--ec--ccccchHHHHHHHHhCC-CCCEEE
Confidence            5789999999999999999999999 5888865554443333332 3322  21  11000113344444433 799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..|
T Consensus       274 d~~G  277 (381)
T PLN02740        274 ECAG  277 (381)
T ss_pred             ECCC
Confidence            7654

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.96  E-value=1.4  Score=39.12  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             cccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|.+||+|++   .+|..+++.|.+.|++|++.+.+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            35789999975   48999999999999999887543

>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE

Probab=88.89  E-value=3.2  Score=40.41  Aligned_cols=88  Identities=14%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .+++.|.+++.....+++.+.++|.+|+.+.+........    ....+..+.++       ..+.+.+.+.+++.++|+
T Consensus       326 Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~~~~d~~~l~~~~~~~~~v~~-------~~d~~e~~~~i~~~~pDl  398 (456)
T TIGR01283       326 GKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKGTEEDYARIRELMGEGTVMLD-------DANPRELLKLLLEYKADL  398 (456)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHcCCCeEEEe-------CCCHHHHHHHHhhcCCCE
Confidence            5788887777788999999999999998875432222111    11122333221       136788999999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.       .......+.|++++
T Consensus       399 ~ig~~-------~~~~~a~k~giP~i  417 (456)
T TIGR01283       399 LIAGG-------KERYTALKLGIPFC  417 (456)
T ss_pred             EEEcc-------chHHHHHhcCCCEE
Confidence            98542       11223346788876

This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.

>PRK09186 flagellin modification protein A; Provisional

Probab=88.88  E-value=1.7  Score=38.12  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence            47899999 56689999999999999999886543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=88.84  E-value=0.95  Score=46.03  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|+|+|+|+.|+..+..|++.|++|++++...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            47899999999999999999999999999986544

>PLN02427 UDP-apiose/xylose synthase

Probab=88.82  E-value=1.9  Score=40.64  Aligned_cols=33  Identities=12%  Similarity=-0.007  Sum_probs=27.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHc-CCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~-G~~vi~v~~~  103 (313)
                      .++|||+| .|.+|..+++.|.+. |++|++++..
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~   48 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVY   48 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecC
Confidence            35799999 588999999999998 5999988643

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=88.78  E-value=2.4  Score=39.33  Aligned_cols=72  Identities=14%  Similarity=-0.048  Sum_probs=42.7

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEE-EecCCC--cchhhhhhc--C--ceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVA-VYSTID--KDALHVKLA--D--ESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~-v~~~~~--~~~~~~~~a--d--~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      ||||+| +|.+|..+++.|.+.|+++++ ++....  .......+.  .  ..+..       +..+.+.+.+++.+.++
T Consensus         2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~~   74 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA-------DICDRAELDRIFAQHQP   74 (352)
T ss_pred             eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEe-------cCCCHHHHHHHHHhcCC
Confidence            799999 577999999999999987443 432111  000000110  1  11212       23456677777776789


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |.|+-.-
T Consensus        75 d~vih~A   81 (352)
T PRK10084         75 DAVMHLA   81 (352)
T ss_pred             CEEEECC
Confidence            9887543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.77  E-value=0.97  Score=37.78  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             cccEEEEEcCCHh-HHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEI-AVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~-a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|||+|+|.. +..+++.|.+.|.+|+++..+
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            3689999999985 888999999999988887644

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=88.77  E-value=1.2  Score=39.41  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEe
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      +.+++||+|+   +.+|..+++.+.+.|++|++.+
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~   39 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITY   39 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEe
Confidence            3578999996   4799999999999999998764

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.73  E-value=1.8  Score=42.31  Aligned_cols=34  Identities=12%  Similarity=0.106  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|+|+.|+..+..|.+.|++|++++..+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5789999999999999999999999999997543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=88.66  E-value=0.67  Score=43.03  Aligned_cols=34  Identities=15%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |+++|.|+|.|.+|..++..|.+.|++|++++.+
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            4678999999999999999999999999998653

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.65  E-value=1.9  Score=37.99  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=28.9

Q ss_pred             cccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +.+++||+|++   .+|..+++.+.+.|++|++++..
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            45789999975   58999999999999999988643

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=88.63  E-value=4.1  Score=35.64  Aligned_cols=121  Identities=9%  Similarity=0.024  Sum_probs=61.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      -...+|+|+|.|.+|..+++.|.+.|+. ++++|.+.  .. .+.+...+++..  .+. ...-.+.+.+.+++...+.-
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~--ve-~sNL~Rq~l~~~--~di-G~~Ka~~~~~~l~~~np~~~   92 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV--VE-LSNLQRQILHTE--ADV-GQPKAEAAAERLRAINPDVE   92 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE--Ec-CcccccccccCh--hhC-CChHHHHHHHHHHHhCCCCE
Confidence            3467899999999999999999999995 45554332  22 123333333211  011 11234566666666655533


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV  200 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p  200 (313)
                      +-.+..........+.+....+-+...+.-     ..+...-+++.++++|..
T Consensus        93 i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~-----~~r~~l~~~~~~~~ip~i  140 (228)
T cd00757          93 IEAYNERLDAENAEELIAGYDLVLDCTDNF-----ATRYLINDACVKLGKPLV  140 (228)
T ss_pred             EEEecceeCHHHHHHHHhCCCEEEEcCCCH-----HHHHHHHHHHHHcCCCEE
Confidence            322211101122333444444433222211     123445566677777654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK05854 short chain dehydrogenase; Provisional

Probab=88.62  E-value=2.7  Score=38.53  Aligned_cols=35  Identities=9%  Similarity=0.157  Sum_probs=29.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++++|+| ++.+|..+++.|.+.|++|+++..+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~   48 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR   48 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            367899999 55589999999999999999886543

>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like

Probab=88.55  E-value=2.1  Score=41.29  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=56.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh---------cCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL---------ADESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~---------ad~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      .+++.|.|....+..+++.|.+.|.++..+...........++         ....+ .        ..+...+.+.+++
T Consensus       299 gk~v~i~~~~~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v-~--------~~d~~el~~~i~~  369 (428)
T cd01965         299 GKRVAIAGDPDLLLGLSRFLLEMGAEPVAAVTGTDNPPFEKRMELLASLEGIPAEVV-F--------VGDLWDLESLAKE  369 (428)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHcCCcceEEEEcCCCchhHHHHHHhhhhcCCCceEE-E--------CCCHHHHHHHhhc
Confidence            5889999988889999999999999998765433222211111         11111 1        1457788888888


Q ss_pred             cCCCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372          142 RGCTMLHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       142 ~~id~vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .++|.++...       ......++.|++++
T Consensus       370 ~~pdliig~~-------~~~~~a~~~~ip~i  393 (428)
T cd01965         370 EPVDLLIGNS-------HGRYLARDLGIPLV  393 (428)
T ss_pred             cCCCEEEECc-------hhHHHHHhcCCCEE
Confidence            8999998542       22344456787775

The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=88.49  E-value=1.1  Score=47.69  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|+|+|+|+.|+..+..|+++|++|++++..+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            36889999999999999999999999999997543

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=88.49  E-value=2.5  Score=37.45  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~   44 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ   44 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence            57899999 55689999999999999999886543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=88.49  E-value=0.66  Score=43.63  Aligned_cols=36  Identities=8%  Similarity=0.140  Sum_probs=31.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |...|+|+|+|+.|..++..|.+.|++|.+++..+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            456899999999999999999999999999976544

>PRK07045 putative monooxygenase; Reviewed

Probab=88.48  E-value=0.82  Score=43.15  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+|+|+|+|+.|...+..|++.|++|++++..+.
T Consensus         5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07045          5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR   39 (388)
T ss_pred             eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence            45799999999999999999999999999975543

>PRK07677 short chain dehydrogenase; Provisional

Probab=88.47  E-value=1.9  Score=37.87  Aligned_cols=33  Identities=12%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~   35 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK   35 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6799999 55589999999999999998886543

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=88.45  E-value=0.67  Score=38.41  Aligned_cols=34  Identities=12%  Similarity=0.243  Sum_probs=27.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|+++|+|-|..|..++++|+.+|.+|++.+.+|
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            6889999999999999999999999999996655

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.42  E-value=2.9  Score=36.42  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| ++.+|..+++.+.+.|+++++..
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~   37 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNA   37 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence            47899999 55689999999999999987754

>PRK08244 hypothetical protein; Provisional

Probab=88.42  E-value=0.7  Score=45.29  Aligned_cols=35  Identities=6%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ...|+|+|+|+.|+.++..|.+.|++|.+++..+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            45799999999999999999999999999976543

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=88.41  E-value=0.98  Score=43.71  Aligned_cols=39  Identities=10%  Similarity=0.223  Sum_probs=32.7

Q ss_pred             cCcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           64 ALKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        64 ~~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +.+.++..+||||+| .|.+|..+++.|.+.|++|++++.
T Consensus       113 ~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr  152 (436)
T PLN02166        113 PVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDN  152 (436)
T ss_pred             CcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            345555567899999 678999999999999999999864

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.38  E-value=4  Score=35.56  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             ccEEEEEc--CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc---CC
Q 021372           71 QEKILVAN--RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR---GC  144 (313)
Q Consensus        71 ~~~ILIig--~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~---~i  144 (313)
                      .++|||+|  .|.+|..+++.+.+.|+.|++......+... ...+--..+.+|    ..+..++..+....++.   ++
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLD----V~~~~~V~~v~~evr~~~~Gkl   82 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLD----VSKPEEVVTVSGEVRANPDGKL   82 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEec----cCChHHHHHHHHHHhhCCCCce
Confidence            58899999  4558999999999999999987544332221 112222333333    11123344444555542   35


Q ss_pred             CEEeeccC----cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC
Q 021372          145 TMLHPGYG----FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG  196 (313)
Q Consensus       145 d~vip~~g----~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G  196 (313)
                      |.++-.-|    +..-+....+.-.-..+.++|      .+-..|.....+.++.|
T Consensus        83 d~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG------~irM~~a~~h~likaKG  132 (289)
T KOG1209|consen   83 DLLYNNAGQSCTFPALDATIAAVEQCFKVNVFG------HIRMCRALSHFLIKAKG  132 (289)
T ss_pred             EEEEcCCCCCcccccccCCHHHHHhhhccceee------eehHHHHHHHHHHHccc
Confidence            66654322    111112233333345677776      23345666666666666

>PRK06114 short chain dehydrogenase; Provisional

Probab=88.32  E-value=3.1  Score=36.55  Aligned_cols=33  Identities=12%  Similarity=0.080  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~   41 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR   41 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5568999999999999999988654

>PRK05872 short chain dehydrogenase; Provisional

Probab=88.30  E-value=2.5  Score=38.32  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEE   43 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999886544

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.28  E-value=1.6  Score=39.90  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++++|+|.|..|+.+++.|+++|.+|++++.++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36899999999999999999999999999886553

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=88.25  E-value=1.8  Score=40.49  Aligned_cols=33  Identities=21%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEec
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEM-GIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~  102 (313)
                      ||+||+|+|+ |..|..+++.+.++ +++++.+.+
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            4579999995 88999999999887 788877654

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.23  E-value=0.68  Score=43.62  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ...|+|+|+|..|..++.+|.+.|++|.+++..+
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            3469999999999999999999999999997654

>PRK12746 short chain dehydrogenase; Provisional

Probab=88.21  E-value=2.4  Score=37.04  Aligned_cols=31  Identities=16%  Similarity=0.119  Sum_probs=26.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .++++|+| +|.+|..+++.+.+.|++|+++.
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~   37 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGALVAIHY   37 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence            47899999 66789999999999999987753

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.16  E-value=2.9  Score=38.58  Aligned_cols=78  Identities=17%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh----cCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS----RGC  144 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~----~~i  144 (313)
                      +..++||+|+|++|+-....|+..|.. |++++..+.......++-...+.  +... .+  .++.+.+.+++    ..+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~--~~~~-~~--~~~~~~~~v~~~~g~~~~  243 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTD--PSSH-KS--SPQELAELVEKALGKKQP  243 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEe--eccc-cc--cHHHHHHHHHhhccccCC
Confidence            367899999999999999999999985 56665566666665665444442  1111 11  35555555543    347


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |..+-..|
T Consensus       244 d~~~dCsG  251 (354)
T KOG0024|consen  244 DVTFDCSG  251 (354)
T ss_pred             CeEEEccC
Confidence            88886554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=88.13  E-value=0.6  Score=39.40  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=28.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ||.|+|+|.+|..++..+...|++|++++.++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   34 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEA   34 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            6899999999999999999999999999765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07538 hypothetical protein; Provisional

Probab=88.11  E-value=0.78  Score=43.79  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++|+|+|+|..|+.++.+|++.|++|++++..+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP   33 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            469999999999999999999999999997654

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=88.11  E-value=0.76  Score=45.66  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|||.|||+|..|+..++.|.+.|++++++....+
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            37899999999999999999999999999876544

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=88.10  E-value=1.7  Score=39.67  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~   38 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP   38 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            36899999 57899999999999999998876443

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.99  E-value=6  Score=38.11  Aligned_cols=34  Identities=12%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|-|.+|...++.|++.|++|.+.|...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            5789999999999999999999999999887544

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=87.96  E-value=0.83  Score=44.57  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|||+|+.|+..++.|++.|++|+++....
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence            5789999999999999999999999999987544

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=87.95  E-value=3.4  Score=40.07  Aligned_cols=87  Identities=14%  Similarity=0.023  Sum_probs=51.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++++|+|+|..+..+++.+++   .|++++.+-++.... .........+          ... +.+.+.++++++|.|
T Consensus       125 ~rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~-~~~~i~g~pV----------lg~-~~l~~~i~~~~id~V  192 (456)
T TIGR03022       125 GRPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAA-SGRLLTGLPV----------VGA-DDALRLYARTRYAYV  192 (456)
T ss_pred             CceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCccc-cccccCCCcc----------cCh-hHHHHHHHhCCCCEE
Confidence            4679999999999999999874   578887654332111 0011111111          122 567788888889977


Q ss_pred             eeccCcCcc--cHHHHHHHHHcCC
Q 021372          148 HPGYGFLAE--NAVFVEMCREHGI  169 (313)
Q Consensus       148 ip~~g~~~e--~~~~~~~l~~~gi  169 (313)
                      +...+....  ...+.+.+++.++
T Consensus       193 iIAip~~~~~~~~~ll~~l~~~~v  216 (456)
T TIGR03022       193 IVAMPGTQAEDMARLVRKLGALHF  216 (456)
T ss_pred             EEecCCccHHHHHHHHHHHHhCCC
Confidence            665432222  1345556666666

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=87.93  E-value=1.1  Score=31.29  Aligned_cols=30  Identities=7%  Similarity=-0.008  Sum_probs=26.0

Q ss_pred             EEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           76 VANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        76 Iig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |+|+|..|+..+..|++.|++|.+++....
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999976544

...

>PRK10262 thioredoxin reductase; Provisional

Probab=87.92  E-value=0.83  Score=41.99  Aligned_cols=35  Identities=17%  Similarity=0.222  Sum_probs=30.6

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +...++|+|+|+|+.|+..+..|.++|+++++++.
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~   37 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITG   37 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            33467899999999999999999999999988863

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=87.92  E-value=1.9  Score=37.52  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~   37 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR   37 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence            57899999 56689999999999999999886443

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08328 hypothetical protein; Provisional

Probab=87.91  E-value=6.6  Score=34.48  Aligned_cols=121  Identities=10%  Similarity=0.018  Sum_probs=61.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ...+|+|+|.|..|..+++.|.+.|+. ++++|.+.-.   .+.+..+.++..  .+.....-.+...+.+++.+.+..+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve---~sNL~Rq~l~~~--~dvG~~~k~~~a~~~l~~~np~v~v  100 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE---LSNLNRQILHWE--EDLGKNPKPLSAKWKLERFNSDIKI  100 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC---hhhhccccccCh--hhcCchHHHHHHHHHHHHhCCCCEE
Confidence            357899999999999999999999996 4556443322   233333333211  0001001122233444555566555


Q ss_pred             eccC-cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          149 PGYG-FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       149 p~~g-~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      -.+. ...+ ....+.++...+-+-..+..     ..+....+++.++|+|...
T Consensus       101 ~~~~~~~~~-~~~~~~l~~~D~Vid~~d~~-----~~r~~l~~~~~~~~ip~i~  148 (231)
T PRK08328        101 ETFVGRLSE-ENIDEVLKGVDVIVDCLDNF-----ETRYLLDDYAHKKGIPLVH  148 (231)
T ss_pred             EEEeccCCH-HHHHHHHhcCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEE
Confidence            3321 2222 22334454444433322111     1233445667788888654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=87.87  E-value=3.6  Score=35.65  Aligned_cols=36  Identities=14%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYST  103 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~  103 (313)
                      +-...+|+|+|.|.+|-.+++.|.+.|+. ++++|.+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            33467899999999999999999999997 7777654

>PRK08013 oxidoreductase; Provisional

Probab=87.87  E-value=0.72  Score=43.86  Aligned_cols=35  Identities=11%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ...|+|+|+|+.|..++-+|.+.|++|.+++..+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            35799999999999999999999999999976543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=87.82  E-value=0.62  Score=44.26  Aligned_cols=34  Identities=9%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ...|+|+|+|+.|..++.+|.+.|++|++++..+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            3579999999999999999999999999997543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=87.81  E-value=1.7  Score=37.87  Aligned_cols=33  Identities=15%  Similarity=0.094  Sum_probs=28.4

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+| .|.+|..+++.+.+.|++|++++.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5799999 56789999999999999999986543

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=87.81  E-value=0.67  Score=43.91  Aligned_cols=33  Identities=6%  Similarity=0.130  Sum_probs=30.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ...|+|+|+|+.|+.++-+|++.|++|.+++..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            467999999999999999999999999999754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=87.79  E-value=2.3  Score=39.46  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=31.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcch
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA  108 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~  108 (313)
                      ..+|||.|+|.+|+.+++.++.+|.+|++++.++....
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~  204 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLE  204 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence            57899999999999999999999999888765544433

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=87.76  E-value=1.4  Score=42.81  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.3

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|...|+|+|+|+.|...+..|.+.|++|.+++..
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~   71 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK   71 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            34678999999999999999999999999999754

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.76  E-value=3.8  Score=39.26  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|-|.+|..+++.+++.|++|++.|.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4689999999999999999999999988887543

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.74  E-value=0.78  Score=45.18  Aligned_cols=36  Identities=14%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++++|+|||+|..|+..++-|...|++|+++...
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR   47 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR   47 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc
Confidence            334789999999999999999999999999998653

>PLN02206 UDP-glucuronate decarboxylase

Probab=87.73  E-value=0.83  Score=44.28  Aligned_cols=38  Identities=13%  Similarity=0.238  Sum_probs=31.8

Q ss_pred             CcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           65 LKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        65 ~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ++.++..+||||+| .|.+|..+++.|.+.|++|++++.
T Consensus       113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~  151 (442)
T PLN02206        113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN  151 (442)
T ss_pred             cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence            34455568999999 688999999999999999998863

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=87.72  E-value=0.82  Score=48.32  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ..+||+|+|+|+.|+..+..|.+.|++|++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~  414 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG  414 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence            478999999999999999999999999999975

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=87.63  E-value=2.2  Score=38.43  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +|||+| .|.+|..+++.|.+.|++|+.++....
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~   35 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD   35 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            399999 588999999999999999999975443

>PLN02650 dihydroflavonol-4-reductase

Probab=87.61  E-value=2.4  Score=39.33  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~   39 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDP   39 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCc
Confidence            57899999 57799999999999999999876443

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=87.60  E-value=2.5  Score=37.12  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus        11 ~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~   45 (256)
T PRK06124         11 GQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA   45 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            57899999 56689999999999999999987654

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=87.60  E-value=4  Score=38.02  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=25.7

Q ss_pred             ccEEEEEcCCHhHHHHH-HHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVI-RTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~-~al~~~G~~vi~v~~  102 (313)
                      .-||.++|+|..|..++ +..+-.|++++++..
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd   49 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISD   49 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEec
Confidence            46899999999998877 445556999999863

>PRK12831 putative oxidoreductase; Provisional

Probab=87.59  E-value=0.96  Score=44.13  Aligned_cols=34  Identities=15%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|+|+.|+..+..|+++|++|++++..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4688999999999999999999999999999643

>TIGR02415 23BDH acetoin reductases

Probab=87.59  E-value=2.6  Score=36.77  Aligned_cols=32  Identities=13%  Similarity=0.096  Sum_probs=27.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   33 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLN   33 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999 5678999999999999999888654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=87.57  E-value=5.3  Score=36.88  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcc---cHH
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAE---NAV  159 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e---~~~  159 (313)
                      ...-+++|.+.|.+++=+.......+.....-.+...+   |...++.+.-.++-.+.+.++|.+=...|-...   ...
T Consensus        38 Tv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~v---PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~v~~  114 (361)
T COG0821          38 TVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNV---PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDRVRE  114 (361)
T ss_pred             HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCC---CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHHHHH
Confidence            45667899999999887754433333222221111112   122222222455555666777766544432222   245


Q ss_pred             HHHHHHHcCCce-eCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEE
Q 021372          160 FVEMCREHGINF-IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR  238 (313)
Q Consensus       160 ~~~~l~~~gi~~-~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~  238 (313)
                      +.+.+.+.|+++ +|-++-++        -+++++++|-|+|+.   ++.|.=.-.+.+++++|+=++=         -.
T Consensus       115 vVe~Ak~~g~piRIGVN~GSL--------ek~~~~ky~~pt~ea---lveSAl~~a~~~e~l~f~~i~i---------S~  174 (361)
T COG0821         115 VVEAAKDKGIPIRIGVNAGSL--------EKRLLEKYGGPTPEA---LVESALEHAELLEELGFDDIKV---------SV  174 (361)
T ss_pred             HHHHHHHcCCCEEEecccCch--------hHHHHHHhcCCCHHH---HHHHHHHHHHHHHHCCCCcEEE---------EE
Confidence            667777889887 56554433        356777777888775   5666555556777888872211         12


Q ss_pred             EeCCHHHHHHHHHHHHHH
Q 021372          239 LAKEPDEFVKLLQQAKSE  256 (313)
Q Consensus       239 ~v~~~~el~~~~~~~~~~  256 (313)
                      +..+..++.+++..+...
T Consensus       175 K~Sdv~~~v~aYr~lA~~  192 (361)
T COG0821         175 KASDVQLMVAAYRLLAKR  192 (361)
T ss_pred             EcCCHHHHHHHHHHHHHh
Confidence            456677777777766543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=87.53  E-value=0.87  Score=43.02  Aligned_cols=32  Identities=13%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+|+|+|+|+.|..++.+|.+.|++|++++..
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~   35 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG   35 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            57999999999999999999999999999744

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=87.47  E-value=0.69  Score=43.59  Aligned_cols=33  Identities=9%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc---CCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM---GIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~---G~~vi~v~~  102 (313)
                      ++.+|+|+|+|+.|..++-.|++.   |++|++++.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~   37 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA   37 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence            356799999999999999999998   999999975

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=87.45  E-value=1  Score=37.93  Aligned_cols=30  Identities=7%  Similarity=0.160  Sum_probs=27.8

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +|+|+|+|+.|+..+..|.+.|+++++++.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~   30 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEK   30 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence            589999999999999999999999999943

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like

Probab=87.45  E-value=2.3  Score=33.41  Aligned_cols=78  Identities=10%  Similarity=0.115  Sum_probs=44.7

Q ss_pred             EEEEEcCCH--hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCC--cCCHHHHHHHHHhcCCCEEe
Q 021372           73 KILVANRGE--IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQS--YLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        73 ~ILIig~g~--~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~--~~~~~~l~~~~~~~~id~vi  148 (313)
                      |||+++...  ....+++.|++.|++|.++..............-..+.++ .+....  +...-.+..++++.++|.|+
T Consensus         1 KIl~i~~~~~~~~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~-~~~k~~~~~~~~~~l~k~ik~~~~DvIh   79 (139)
T PF13477_consen    1 KILLIGNTPSTFIYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP-SPRKSPLNYIKYFRLRKIIKKEKPDVIH   79 (139)
T ss_pred             CEEEEecCcHHHHHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec-CCCCccHHHHHHHHHHHHhccCCCCEEE
Confidence            467777443  4678899999999999999874443111111111222221 111111  11233566778889999998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      ...
T Consensus        80 ~h~   82 (139)
T PF13477_consen   80 CHT   82 (139)
T ss_pred             Eec
Confidence            643

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.43  E-value=5.9  Score=38.38  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--hhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--VKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ||+|+|.|..|+..++.|.+.|++|.+.+.........  ..+.+  -.+..+.      ..+.+.+....  .++|.|+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~------~~~~~~~~~~~--~~~d~vv   73 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGK------PLELESFQPWL--DQPDLVV   73 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECC------ccchhhhhHHh--hcCCEEE
Confidence            69999999999999999999999999987554322211  11211  1222211      11122222222  3478888


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHH-HHhC-----------CH----HHHHHHHHHCCCCC
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSI-RIMG-----------DK----STARETMKNAGVPT  199 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i-~~~~-----------DK----~~~~~~l~~~Gip~  199 (313)
                      ...+....+. ....+.+.|+++.+ ..+.. ....           -|    ....++|+..|...
T Consensus        74 ~s~gi~~~~~-~~~~a~~~~i~v~~-~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~  138 (459)
T PRK02705         74 VSPGIPWDHP-TLVELRERGIEVIG-EIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA  138 (459)
T ss_pred             ECCCCCCCCH-HHHHHHHcCCcEEE-hHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence            7654433333 33444578888873 44433 2221           23    34457788888654

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=87.39  E-value=7.5  Score=35.42  Aligned_cols=107  Identities=19%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC--cch--------hhhh--h---cCceEEccCCCCCCCcCCHHH
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID--KDA--------LHVK--L---ADESVCIGEAPSSQSYLLIPN  134 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~--~~~--------~~~~--~---ad~~~~v~~~~~~~~~~~~~~  134 (313)
                      ..+|+|.| .|..+..+.+.+...|.+ ++...++.  ...        ....  .   .|-.+..-|      ......
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vp------a~~v~~   78 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVP------APFAAD   78 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecC------HHHHHH
Confidence            46899999 888899999999999999 44444444  111        0000  0   233222211      122445


Q ss_pred             HHHHHHhcCCCEEeec-cCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          135 VLSAAISRGCTMLHPG-YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       135 l~~~~~~~~id~vip~-~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                      +++.|.+.++..++.. .|+ .|.  ..+.+..++.|++++||+---+-...++
T Consensus        79 ~l~e~~~~Gvk~avIis~Gf-~e~~~~~l~~~a~~~girilGPNc~Giin~~~~  131 (286)
T TIGR01019        79 AIFEAIDAGIELIVCITEGI-PVHDMLKVKRYMEESGTRLIGPNCPGIITPGEC  131 (286)
T ss_pred             HHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEECCCCceEEccccc
Confidence            5555666788766543 333 333  3667778888999999887655444443

ATP citrate lyases appear to form an outgroup.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=87.39  E-value=0.79  Score=43.59  Aligned_cols=34  Identities=6%  Similarity=0.181  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|+.|..++.+|.+.|++|.+++..+
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   51 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP   51 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence            4679999999999999999999999999997654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=87.36  E-value=3.7  Score=35.70  Aligned_cols=31  Identities=16%  Similarity=0.183  Sum_probs=27.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| ++.+|..+++.+.+.|++|+++.
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~   37 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINY   37 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEc
Confidence            57899999 66689999999999999998754

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.31  E-value=14  Score=35.56  Aligned_cols=113  Identities=11%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +++|+|+|-|.+|...++.+.+.  |++|.+.|........ ..+.. -.+..+       ..+.+.+      .++|.|
T Consensus         7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~-~~l~~g~~~~~g-------~~~~~~~------~~~d~v   72 (438)
T PRK04663          7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQ-EQLPEDVELHSG-------GWNLEWL------LEADLV   72 (438)
T ss_pred             CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhH-HHhhcCCEEEeC-------CCChHHh------ccCCEE
Confidence            36899999999999999999887  5888887654432211 11221 112121       0122222      347888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC-----------C----HHHHHHHHHHCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG-----------D----KSTARETMKNAGVPT  199 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~-----------D----K~~~~~~l~~~Gip~  199 (313)
                      +...+....+..+ ..+.+.|+++. ...+.+....           -    +.....+|++.|..+
T Consensus        73 V~SpgI~~~~p~~-~~a~~~gi~i~-~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~  137 (438)
T PRK04663         73 VTNPGIALATPEI-QQVLAAGIPVV-GDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKV  137 (438)
T ss_pred             EECCCCCCCCHHH-HHHHHCCCcEE-EHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCE
Confidence            7665443344443 44456788887 4555543322           2    334557777787653

>PRK05650 short chain dehydrogenase; Provisional

Probab=87.31  E-value=2.5  Score=37.50  Aligned_cols=33  Identities=3%  Similarity=0.029  Sum_probs=27.8

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++|||+| +|.+|..+++.+.+.|++|++++.+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~   34 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNE   34 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999 56789999999999999999886543

>PRK11579 putative oxidoreductase; Provisional

Probab=87.23  E-value=2.9  Score=38.92  Aligned_cols=143  Identities=10%  Similarity=-0.003  Sum_probs=75.2

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.++.. .+.++++. +++++.+. +.+...    ......      ...-|.+.+.++   ...++|+|+
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~-d~~~~~----~~~~~~------~~~~~~~~~ell---~~~~vD~V~   69 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVS-SSDATK----VKADWP------TVTVVSEPQHLF---NDPNIDLIV   69 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEE-CCCHHH----HHhhCC------CCceeCCHHHHh---cCCCCCEEE
Confidence            368999999999874 56777664 78888765 333221    111110      001134455544   456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc-cCCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~-~~~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... ...+...+..+.+.|.+++.--|-+ ....+=..+.+++++.|+..--.+.. .......+.+.++  .+|-+..
T Consensus        70 I~tp-~~~H~~~~~~al~aGkhVl~EKPla-~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g~iG~i~~  147 (346)
T PRK11579         70 IPTP-NDTHFPLAKAALEAGKHVVVDKPFT-VTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEGVLGEVAY  147 (346)
T ss_pred             EcCC-cHHHHHHHHHHHHCCCeEEEeCCCC-CCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcCCCCCeEE
Confidence            7642 1233455555557788876321111 11122234566777888775332211 1122334555554  3566665


Q ss_pred             Eeec
Q 021372          226 IKAT  229 (313)
Q Consensus       226 vKP~  229 (313)
                      ++..
T Consensus       148 ~~~~  151 (346)
T PRK11579        148 FESH  151 (346)
T ss_pred             EEEE
Confidence            6543

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=87.19  E-value=2.8  Score=38.35  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=28.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+| .|.+|..+++.|.+.|++|+++..+.
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDL   39 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCC
Confidence            47899999 67799999999999999998665443

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=87.18  E-value=1.6  Score=37.72  Aligned_cols=76  Identities=9%  Similarity=0.003  Sum_probs=46.0

Q ss_pred             cccEEEEEcCCH-hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcC--C
Q 021372           70 RQEKILVANRGE-IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRG--C  144 (313)
Q Consensus        70 ~~~~ILIig~g~-~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~--i  144 (313)
                      ...+|||.|++. +|+.+++.+.++|-+|++................  ....+|    ..+-...+++.++++++.  .
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~D----v~d~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCD----VADRDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeec----ccchhhHHHHHHHHHhhCCch
Confidence            367899999554 8999999999999999998654332222111111  111111    122344667888777654  4


Q ss_pred             CEEee
Q 021372          145 TMLHP  149 (313)
Q Consensus       145 d~vip  149 (313)
                      ++++-
T Consensus        80 NvliN   84 (245)
T COG3967          80 NVLIN   84 (245)
T ss_pred             heeee
Confidence            55553

>PLN02256 arogenate dehydrogenase

Probab=87.15  E-value=3.5  Score=37.86  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++|.|+|.|.+|..+++.+++.|++|++++.+
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~   68 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS   68 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence            3578999999999999999999999999888654

>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit

Probab=87.11  E-value=2.4  Score=40.87  Aligned_cols=88  Identities=10%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc---ch-hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK---DA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~---~~-~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .||++|.+++.....++..++++|.+|+++...-..   .. ......+..+.++       ..+...+.+.+++.++|+
T Consensus       300 Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~~~~~~~~~~~~~~~~~~~~~i~~-------~~d~~e~~~~i~~~~pDl  372 (421)
T cd01976         300 GKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD-------DVTHYELEEFVKRLKPDL  372 (421)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHCCCEEEEEEeecCCHHHHhhHHhhcCCceEEEc-------CCCHHHHHHHHHHhCCCE
Confidence            578988887766778888999999999987542111   11 1111123333232       135678888888999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.    .   .....+++|+|+.
T Consensus       373 iig~~----~---~~~~a~k~giP~~  391 (421)
T cd01976         373 IGSGI----K---EKYVFQKMGIPFR  391 (421)
T ss_pred             EEecC----c---chhhhhhcCCCeE
Confidence            99553    1   2233467788873

A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=87.10  E-value=3  Score=38.63  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=53.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +..+|||.|+|.+|..+++.++.+|.. +++++...........+. +..+  +  ...  ....+.+.++....++|++
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v--~--~~~--~~~~~~i~~~~~~~~~d~v  239 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIV--D--YKN--GDVVEQILKLTGGKGVDAV  239 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEe--c--CCC--CCHHHHHHHHhCCCCCcEE
Confidence            357899999999999999999999996 666654433332222222 2222  1  111  1224455555555679999


Q ss_pred             eeccCcCcccHHHHHHHHHcCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGI  169 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi  169 (313)
                      +-..+...-.....+.+...|.
T Consensus       240 ld~~g~~~~~~~~~~~l~~~G~  261 (351)
T cd08285         240 IIAGGGQDTFEQALKVLKPGGT  261 (351)
T ss_pred             EECCCCHHHHHHHHHHhhcCCE
Confidence            8654321111233444545553

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=87.07  E-value=1.4  Score=47.05  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|+|+.|+..+..|++.|++|++++..+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~  570 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE  570 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            5789999999999999999999999999997543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=86.97  E-value=1.2  Score=43.15  Aligned_cols=34  Identities=12%  Similarity=0.161  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|+|+.|+..+..|++.|++|++++..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            3689999999999999999999999999999754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07588 hypothetical protein; Provisional

Probab=86.97  E-value=1  Score=42.55  Aligned_cols=33  Identities=9%  Similarity=0.021  Sum_probs=29.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++|+|+|+|..|+.++.+|.+.|++|+++...+
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~   33 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP   33 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence            379999999999999999999999999997553

>PRK07791 short chain dehydrogenase; Provisional

Probab=86.96  E-value=3  Score=37.61  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=28.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.+.+.|.+|++++.+
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~   39 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   39 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCC
Confidence            357899999 5568999999999999999887543

>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C

Probab=86.96  E-value=3  Score=39.60  Aligned_cols=103  Identities=14%  Similarity=0.060  Sum_probs=57.0

Q ss_pred             cccEEEEEc--CCHhHHHHHHHHHHcCCcEEEEecC---------CC-cchhhhhhcCceEEccCC---CCCCCc-CCHH
Q 021372           70 RQEKILVAN--RGEIAVRVIRTAHEMGIPCVAVYST---------ID-KDALHVKLADESVCIGEA---PSSQSY-LLIP  133 (313)
Q Consensus        70 ~~~~ILIig--~g~~a~~v~~al~~~G~~vi~v~~~---------~~-~~~~~~~~ad~~~~v~~~---~~~~~~-~~~~  133 (313)
                      ..+|||+.|  .......+++.+.+.|..|+.-+.-         .+ ...+...+|+.......+   ...... .-.+
T Consensus       232 ~~~RIl~tG~~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e~~dp~~aLA~~Yl~~~~~c~~~~~~~~~~R~~  311 (380)
T TIGR02263       232 DNCRVIICGMFCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVALAGDPLQNLALAFLHDSISTAAKYDDDEADKGK  311 (380)
T ss_pred             CCCEEEEECcCCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCCCCCHHHHHHHHHhhCCCCCccccCCChhhHHH
Confidence            368999999  3233467889999999988765320         00 111223345544322110   111111 2467


Q ss_pred             HHHHHHHhcCCCEEeecc--C---cCcccHHHHHHHHHcCCcee
Q 021372          134 NVLSAAISRGCTMLHPGY--G---FLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       134 ~l~~~~~~~~id~vip~~--g---~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .+.+++++.++|+|+-..  +   ...+...+.+.+++.|||++
T Consensus       312 ~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L  355 (380)
T TIGR02263       312 YLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQI  355 (380)
T ss_pred             HHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEE
Confidence            899999999999998431  0   11122344455566666654

This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=86.95  E-value=2.2  Score=39.10  Aligned_cols=35  Identities=3%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcC-CcEEEEecCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G-~~vi~v~~~~  104 (313)
                      |.+++||+|+ +.+|..+++.+.+.| ++|++++.+.
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~   38 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF   38 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            5678999994 558999999999999 9998886443

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK12744 short chain dehydrogenase; Provisional

Probab=86.88  E-value=3.9  Score=35.93  Aligned_cols=32  Identities=19%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.+.+.|++|+++..
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~   40 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHY   40 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCcEEEEec
Confidence            47899999 666899999999999999777753

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.88  E-value=5.5  Score=37.70  Aligned_cols=124  Identities=8%  Similarity=0.027  Sum_probs=64.9

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      +...++|+|+|.|.+|..+++.|.+.|+. ++++|.+.-..   +.+....++..   .+-...-.+.+.+.+++...+.
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~---sNl~Rq~l~~~---~diG~~Ka~~~~~~l~~~np~v  205 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDR---SNLQRQILHTE---DRVGQPKVDSAAQRLAALNPDV  205 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecc---hhhccccccch---hhCCCcHHHHHHHHHHHHCCCC
Confidence            33467899999999999999999999995 66665442111   22222332211   0001123555666666555543


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      -+..+....+.....+.+....+-+-..+.-     ..+....+.+.++++|..-.
T Consensus       206 ~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~-----~~r~~ln~~~~~~~ip~i~~  256 (376)
T PRK08762        206 QVEAVQERVTSDNVEALLQDVDVVVDGADNF-----PTRYLLNDACVKLGKPLVYG  256 (376)
T ss_pred             EEEEEeccCChHHHHHHHhCCCEEEECCCCH-----HHHHHHHHHHHHcCCCEEEE
Confidence            3322211111122334444444433322211     12455667788888886543

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=86.87  E-value=3.1  Score=37.52  Aligned_cols=72  Identities=14%  Similarity=-0.077  Sum_probs=44.4

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcC--CcEEEEecCCC--cchhhhhhcC----ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMG--IPCVAVYSTID--KDALHVKLAD----ESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G--~~vi~v~~~~~--~~~~~~~~ad----~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      +|||+| .|.+|..+++.|.+.|  ++|++++....  .......+..    ..+..       +..+.+.+.++++..+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~~~~~~~~~~~~~~   73 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKG-------DIGDRELVSRLFTEHQ   73 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEc-------CCcCHHHHHHHHhhcC
Confidence            589999 5789999999998887  78887753211  0000011111    11211       2456677888887778


Q ss_pred             CCEEeecc
Q 021372          144 CTMLHPGY  151 (313)
Q Consensus       144 id~vip~~  151 (313)
                      +|.|+-..
T Consensus        74 ~d~vi~~a   81 (317)
T TIGR01181        74 PDAVVHFA   81 (317)
T ss_pred             CCEEEEcc
Confidence            99988654

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=86.85  E-value=1  Score=43.42  Aligned_cols=34  Identities=9%  Similarity=-0.003  Sum_probs=29.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~  104 (313)
                      |+||+|+|+|..|...++.++++  +++|++++.+.
T Consensus         1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            45899999999999999999887  78899997654

>PRK07578 short chain dehydrogenase; Provisional

Probab=86.84  E-value=3.9  Score=34.43  Aligned_cols=60  Identities=13%  Similarity=0.063  Sum_probs=39.3

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEEeec
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTMLHPG  150 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~vip~  150 (313)
                      ++||+| ++.+|..+++.+.+. ++|++++.+..           .+.+|       ..+.+.+.++..+. ++|.++-.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D-------~~~~~~~~~~~~~~~~id~lv~~   62 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVD-------ITDPASIRALFEKVGKVDAVVSA   62 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEec-------CCChHHHHHHHHhcCCCCEEEEC
Confidence            689999 566899999999988 88888754322           12222       23344555555443 68988854


Q ss_pred             c
Q 021372          151 Y  151 (313)
Q Consensus       151 ~  151 (313)
                      -
T Consensus        63 a   63 (199)
T PRK07578         63 A   63 (199)
T ss_pred             C
Confidence            4

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=86.82  E-value=1.6  Score=38.52  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~   51 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV   51 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence            57899999 58899999999999999998875443

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=86.79  E-value=3.6  Score=36.26  Aligned_cols=32  Identities=6%  Similarity=0.062  Sum_probs=27.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.+.+.|+.++++..
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~   39 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR   39 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999 566899999999999999887654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=86.73  E-value=1.6  Score=39.70  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++++|+|.|.+|..+++.|+.+|.+|++++.+.
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5799999999999999999999999998886543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK06184 hypothetical protein; Provisional

Probab=86.72  E-value=1.1  Score=44.09  Aligned_cols=34  Identities=9%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~   36 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP   36 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4579999999999999999999999999997654

>PRK06270 homoserine dehydrogenase; Provisional

Probab=86.72  E-value=9.5  Score=35.61  Aligned_cols=125  Identities=16%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc----------CCcEEEEecC-CC-------cchhhhhhcCceEEccCCCCCCCcCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM----------GIPCVAVYST-ID-------KDALHVKLADESVCIGEAPSSQSYLL  131 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~----------G~~vi~v~~~-~~-------~~~~~~~~ad~~~~v~~~~~~~~~~~  131 (313)
                      |..+|.|+|.|.+|..+++.+.+.          +++++.+.+. ..       .......+....-.+...+......+
T Consensus         1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (341)
T PRK06270          1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS   80 (341)
T ss_pred             CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence            457899999999999999888765          4566655421 10       00000111111000000000000123


Q ss_pred             HHHHHHHHHhcCCCEEeeccCcC---ccc-HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          132 IPNVLSAAISRGCTMLHPGYGFL---AEN-AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       132 ~~~l~~~~~~~~id~vip~~g~~---~e~-~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+   +++.+..+|+|+-..+..   .+. ......+.+.|++++..+-..+....  ..+.++++++|+..
T Consensus        81 ~~---ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~--~eL~~~A~~~g~~~  147 (341)
T PRK06270         81 GL---EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAY--KELKELAKKNGVRF  147 (341)
T ss_pred             HH---HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhH--HHHHHHHHHcCCEE
Confidence            33   445556799998653211   111 23434445789999855433333222  35677777877643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=86.69  E-value=1.1  Score=40.07  Aligned_cols=33  Identities=9%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|+|+|+|+.|+.++..|++.|++|.+++....
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            489999999999999999999999999976543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06720 hypothetical protein; Provisional

Probab=86.63  E-value=3.9  Score=34.01  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=28.6

Q ss_pred             cccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRG-EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+.++|+|++ .+|..+++.+.+.|++|++++.+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~   49 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDID   49 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            35789999954 58999999999999999988744

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.60  E-value=2.4  Score=39.21  Aligned_cols=91  Identities=11%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||.|+|.+|+..++.++.+|.+ |++++.++........+-...+ ++.  ..+   +.+.+.+.  ..++|.++-
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v-i~~--~~~---~~~~~~~~--~g~~D~vid  241 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL-VNP--QND---DLDHYKAE--KGYFDVSFE  241 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE-ecC--Ccc---cHHHHhcc--CCCCCEEEE
Confidence            57899999999999999999999995 7777655544443333332222 221  111   12222221  124899986


Q ss_pred             ccCcCcccHHHHHHHHHcCC
Q 021372          150 GYGFLAENAVFVEMCREHGI  169 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi  169 (313)
                      ..|...-.....+.+...|.
T Consensus       242 ~~G~~~~~~~~~~~l~~~G~  261 (343)
T PRK09880        242 VSGHPSSINTCLEVTRAKGV  261 (343)
T ss_pred             CCCCHHHHHHHHHHhhcCCE
Confidence            55421111234455555553

>PRK07208 hypothetical protein; Provisional

Probab=86.59  E-value=1.1  Score=43.75  Aligned_cols=35  Identities=9%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++|+|+|+|..|+..+..|++.|++|+++....
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~   37 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP   37 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            36789999999999999999999999999997543

>PRK07832 short chain dehydrogenase; Provisional

Probab=86.59  E-value=3.1  Score=37.02  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=27.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999 56689999999999999998886543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=86.57  E-value=1.4  Score=46.78  Aligned_cols=35  Identities=14%  Similarity=0.064  Sum_probs=31.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|+|+|+|+.|+..+..|.+.|++|++++...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            37899999999999999999999999999997543

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.50  E-value=7.1  Score=38.39  Aligned_cols=34  Identities=18%  Similarity=0.129  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|-|.+|+.+++.|+++|++|.+.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4689999999999999999999999999887544

>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional

Probab=86.48  E-value=3.8  Score=40.16  Aligned_cols=88  Identities=11%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh---h-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV---K-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .+++.|.+.+.....+++.+.++|.+|..+...........   . +.+..+.++       ..+...+.+.+++.++|+
T Consensus       324 Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~-------d~~~~e~~~~i~~~~pDl  396 (475)
T PRK14478        324 GKRVLLYTGGVKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMID-------DANPRELYKMLKEAKADI  396 (475)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEe-------CCCHHHHHHHHhhcCCCE
Confidence            57888888777888999999999999988765443221111   1 122223232       134667888888899999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.       .......+.|++++
T Consensus       397 iig~s-------~~~~~a~k~giP~~  415 (475)
T PRK14478        397 MLSGG-------RSQFIALKAGMPWL  415 (475)
T ss_pred             EEecC-------chhhhhhhcCCCEE
Confidence            99542       12233456799886

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=86.48  E-value=2.8  Score=38.80  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=31.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      +.++|+|+| +|.+|..+++.|-++||.|...-.++..
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~   42 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED   42 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch
Confidence            468999999 6678999999999999999987655543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.45  E-value=1.1  Score=43.44  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|+|+.|+..+..|.+.|++|++++..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Confidence            3678999999999999999999999999999654

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=86.41  E-value=3.8  Score=39.52  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=30.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |...|+|+|+|..|+..+..+.+.|.+|.+++..
T Consensus         1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~   34 (422)
T PRK05329          1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG   34 (422)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence            4567999999999999999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
2vqd_A	464	Crystal Structure Of Biotin Carboxylase From Pseudo		3e-71
2vpq_A	451	Crystal Structure Of Biotin Carboxylase From S. Aur		9e-70
1ulz_A	451	Crystal Structure Of The Biotin Carboxylase Subunit		1e-69
3hb9_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		4e-65
3hbl_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		5e-65
3ho8_A	1150	Crystal Structure Of S. Aureus Pyruvate Carboxylase		5e-65
4hnt_A	1173	Crystal Structure Of F403a Mutant Of S. Aureus Pyru		5e-65
3bg5_A	1173	Crystal Structure Of Staphylococcus Aureus Pyruvate		6e-65
4hnu_A	1173	Crystal Structure Of K442e Mutant Of S. Aureus Pyru		6e-65
3n6r_A	681	Crystal Structure Of The Holoenzyme Of Propionyl-co		7e-65
4hnv_A	1173	Crystal Structure Of R54e Mutant Of S. Aureus Pyruv		3e-64
2dzd_A	461	Crystal Structure Of The Biotin Carboxylase Domain		1e-63
3jzf_A	486	Crystal Structure Of Biotin Carboxylase From E. Col		8e-63
3g8c_A	444	Crystal Stucture Of Biotin Carboxylase In Complex W		1e-62
1dv2_A	452	The Structure Of Biotin Carboxylase, Mutant E288k,		1e-62
1bnc_A	449	Three-Dimensional Structure Of The Biotin Carboxyla		1e-62
3g8d_A	444	Crystal Structure Of The Biotin Carboxylase Subunit		1e-62
3rup_B	452	Crystal Structure Of E.Coli Biotin Carboxylase In C		1e-62
2gpw_A	469	Crystal Structure Of The Biotin Carboxylase Subunit		1e-62
2gps_A	469	Crystal Structure Of The Biotin Carboxylase Subunit		5e-62
3rv4_A	452	Crystal Structure Of E.Coli Biotin Carboxylase R16e		6e-62
3ouz_A	446	Crystal Structure Of Biotin Carboxylase-Adp Complex		1e-59
3tw7_A	1165	Structure Of Rhizobium Etli Pyruvate Carboxylase T8		3e-59
2qf7_A	1165	Crystal Structure Of A Complete Multifunctional Pyr		3e-59
3va7_A	1236	Crystal Structure Of The Kluyveromyces Lactis Urea		7e-55
3u9s_A	655	Crystal Structure Of P. Aeruginosa 3-methylcrotonyl		2e-48
2yl2_A	540	Crystal Structure Of Human Acetyl-Coa Carboxylase 1		1e-30
2hjw_A	573	Crystal Structure Of The Bc Domain Of Acc2 Length =		3e-30
3gid_A	540	The Biotin Carboxylase (Bc) Domain Of Human Acetyl-		4e-30
3jrx_A	587	Crystal Structure Of The Bc Domain Of Acc2 In Compl		4e-30
3jrw_A	587	Phosphorylated Bc Domain Of Acc2 Length = 587		4e-30
1w93_A	553	Crystal Structure Of Biotin Carboxylase Domain Of A		5e-25
1w96_A	554	Crystal Structure Of Biotin Carboxylase Domain Of A		5e-25
2cqy_A	108	Solution Structure Of B Domain From Human Propionyl		8e-18
3r23_A	307	Crystal Structure Of D-Alanine--D-Alanine Ligase Fr		1e-05
3vpd_A	281	Lysx From Thermus Thermophilus Complexed With Amp-p		2e-05
2yrw_A	451	Crystal Structure Of Gar Synthetase From Geobacillu		3e-05
2czg_A	433	Crystal Structure Of Probable Phosphoribosylglycina		5e-05
1uc8_A	280	Crystal Structure Of A Lysine Biosynthesis Enzyme,		1e-04
1jdb_B	1073	Carbamoyl Phosphate Synthetase From Escherichia Col		1e-04
1a9x_A	1073	Carbamoyl Phosphate Synthetase: Caught In The Act O		1e-04
1ce8_A	1073	Carbamoyl Phosphate Synthetase From Escherichis Col		1e-04
2yw2_A	424	Crystal Structure Of Gar Synthetase From Aquifex Ae		2e-04
2qk4_A	452	Human Glycinamide Ribonucleotide Synthetase Length		3e-04
3k5i_A	403	Crystal Structure Of N5-Carboxyaminoimidazole Synth		3e-04
3ax6_A	380	Crystal Structure Of N5-Carboxyaminoimidazole Ribon		3e-04
3k5h_A	403	Crystal Structure Of Carboxyaminoimidazole Ribonucl		4e-04
2xd4_A	422	Nucleotide-Bound Structures Of Bacillus Subtilis Gl		5e-04
2r84_A	334	Crystal Structure Of Purp From Pyrococcus Furiosus		7e-04

>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas Aeruginosa Complexed With Ampcp Length = 464

Iteration: 1
 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 173/231 (74%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           EK+L+ANRGEIA+R++R   E+GI  VAV+ST D++ +H+ LADESVCIG AP++QSYL 
Sbjct: 3   EKVLIANRGEIALRILRACKELGIKTVAVHSTADRELMHLSLADESVCIGPAPATQSYLQ 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP +++AA   G T +HPGYGFLAENA F E     G  F+GP  + IR+MGDK +A++ 
Sbjct: 63  IPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFTFVGPTAEVIRLMGDKVSAKDA 122
Query: 192 MKNAGVPTVPGSDGLLQSTEE-AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVPTVPGSDG L   EE A+ +A E+G+PV+IKA  GGGGRGMR+  +  E +K  
Sbjct: 123 MKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVIIKAAGGGGGRGMRVVYDESELIKSA 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           +  ++EA AAFGN  VYLEK++ NPRH+E QVL+D  GN +H G+RDCS+Q
Sbjct: 183 KLTRTEAGAAFGNPMVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQ 233

>pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus Complexed With Amppnp Length = 451

Iteration: 1
 Score =  259 bits (663), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 168/230 (73%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +K+L+ANRGEIAVR+IR   ++GI  VA+YS  DKDALH ++ADE+ C+G   S  SYL 
Sbjct: 2   KKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLN 61
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IPN+LS A S GC  +HPGYGFLAENA F E+C    + FIGP+  SI+ MG K  A+  
Sbjct: 62  IPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M  A VP VPGSDGL++   EA K+A ++G+PV+IKATAGGGG+G+R+A++  E     +
Sbjct: 122 MIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFR 181
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             + EA  AFGN G+Y+EK+++N RHIE Q++ D YGNV+H GERDC+IQ
Sbjct: 182 MTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQ 231

>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of Pyruvate Carboxylase Length = 451

Iteration: 1
 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/229 (57%), Positives = 171/229 (74%), Gaps = 1/229 (0%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           K+LVANRGEIAVR+IR   E+GIP VA+Y+ ++  A HVKLADE+  IG  P   +YL  
Sbjct: 4   KVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLD-TYLNK 62
Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             +++ A+  G   +HPGYGFLAENA F +MC E GI FIGP+   I +MGDK+ ++E M
Sbjct: 63  QRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVM 122
Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
           K AGVP VPGSDG+L+S EEA  LA E+G+PV++KATAGGGGRG+R+ +  +E VK  +Q
Sbjct: 123 KKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQ 182
Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           A  EA  AFG   + LEK+++NP+HIE+QVL DK+GNV+H GERDCSIQ
Sbjct: 183 ASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQ 231

>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t Mutant Length = 1150

Iteration: 1
 Score =  244 bits (623), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 5   KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 65  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 235

>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a Mutant Length = 1150

Iteration: 1
 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 5   KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 65  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 235

>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In Complex With Coenzyme A Length = 1150

Iteration: 1
 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 5   KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 65  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 235

>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  244 bits (622), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 28  KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 88  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 258

>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 28  KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 88  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 258

>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  244 bits (622), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 28  KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 88  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 258

>pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-coa Carboxylase (pcc) Length = 681

Iteration: 1
 Score =  243 bits (621), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 170/229 (74%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           KIL+ANRGEIA RVI+TA +MGI  VA+YS  DK ALHV++ADE+V IG  P++QSY++I
Sbjct: 4   KILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVI 63
Query: 133 PNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM 192
             V++A  + G   +HPGYGFL+EN+ F E     G+ F+GP   +I  MGDK T+++  
Sbjct: 64  DKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIA 123
Query: 193 KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ 252
           + A V TVPG  GL++  +EAVK+++++G+PVMIKA+AGGGG+GMR+A    E  +  Q 
Sbjct: 124 QEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQS 183
Query: 253 AKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           +K+EAA +FG+D +++EK+V  PRHIE QVL D +GN ++ GER+CSIQ
Sbjct: 184 SKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQ 232

>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate Carboxylase Length = 1173

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 156/231 (67%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIG-EAPSSQSYL 130
           +K+LVANRGEIA+R+   A E+ I  VA+YS  DK +LH   ADES  +G +   ++SYL
Sbjct: 28  KKLLVANRGEIAIRIFEAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 87
Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 88  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 147
Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 148 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 207
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q
Sbjct: 208 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQ 258

>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of Pyruvate Carboxylase Length = 461

Iteration: 1
 Score =  239 bits (611), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 155/235 (65%), Gaps = 1/235 (0%)
Query: 68  TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS- 126
           T R  K+LVANRGEIA+RV R   E+GI  VA+YS  D  + H   ADE+  +GE     
Sbjct: 3   TRRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPI 62
Query: 127 QSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKS 186
           ++YL I  ++  A +     +HPGYGFL+EN  F + CRE GI FIGPN + + + GDK 
Sbjct: 63  EAYLDIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKV 122
Query: 187 TARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEF 246
            AR    NAG+P +PGSDG +   E+ V  A+  G+P++IKA  GGGGRGMR+ +   E 
Sbjct: 123 KARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEV 182
Query: 247 VKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            +  ++AKSEA AAFG+D VY+EK ++NP+HIE Q+L D  GN+VH  ERDCS+Q
Sbjct: 183 KEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQ 237

>pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In Complex With Benzimidazoles Series Length = 486

Iteration: 1
 Score =  236 bits (603), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 24  DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 83
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 84  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 143
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 144 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 203
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 204 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 254

>pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With Biotin, Bicarbonate, Adp And Mg Ion Length = 444

Iteration: 1
 Score =  236 bits (603), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 3   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 63  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 233

>pdb|1DV2|A Chain A, The Structure Of Biotin Carboxylase, Mutant E288k, Complexed With Atp Length = 452

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 6   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 65
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 66  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 125
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 126 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 185
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 186 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 236

>pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase Subunit Of Acetyl-Coa Carboxylase Length = 449

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 3   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 63  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 233

>pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli Length = 444

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 3   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 63  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 233

>pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/231 (54%), Positives = 165/231 (71%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 23  DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 83  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 142
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 143 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 202
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 203 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 253

>pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli. Length = 469

Iteration: 1
 Score =  234 bits (597), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 164/231 (70%), Gaps = 1/231 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R    +GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 23  DKIVIANRGEIALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 82
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 83  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 142
Query: 192 MKNAGVPTVPGSDGLL-QSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 143 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 202
Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q
Sbjct: 203 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ 253

>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From Campylobacter Jejuni Length = 446

Iteration: 1
 Score =  226 bits (577), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 123/228 (53%), Positives = 160/228 (70%)
Query: 74  ILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIP 133
           IL+ANRGEIA+R +RT  E G   + VYS  DKDAL++K AD S+CIG+A SS+SYL IP
Sbjct: 9   ILIANRGEIALRALRTIKEXGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIP 68
Query: 134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMK 193
            +++AA       + PGYGFL+EN  FVE+C +H I FIGP+ ++  +  DKS A++  +
Sbjct: 69  AIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAXNLXSDKSKAKQVXQ 128
Query: 194 NAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQA 253
            AGVP +PGSDG L   E A KLA E+G+PV++KA AGGGGRG R+ +   +  K    A
Sbjct: 129 RAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGXRVVENEKDLEKAYWSA 188
Query: 254 KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           +SEA  AFG+   Y EKY+QNPRHIE QV+ D +GNV+H GERDCS Q
Sbjct: 189 ESEAXTAFGDGTXYXEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSXQ 236

>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a Crystallized Without Acetyl Coenzyme-A Length = 1165

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 151/236 (63%), Gaps = 7/236 (2%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP-------S 125
           KILVANR EIA+RV R A+E+GI  VA+++  DK ALH   ADES  +G  P        
Sbjct: 16  KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75
Query: 126 SQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDK 185
            +SYL I  V+  A   G   +HPGYG L+E+  FV+ C + GI FIGP  D++R +G+K
Sbjct: 76  IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNK 135
Query: 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDE 245
             AR    + GVP VP ++ L     E  K+A  +G+PVM+KA+ GGGGRGMR+ +   +
Sbjct: 136 VAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEAD 195
Query: 246 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             K + +AK EA AAFG D VYLEK V+  RH+E Q+L D +GNVVH  ERDCS+Q
Sbjct: 196 LAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ 251

>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate Carboxylase From Rhizobium Etli Length = 1165

Iteration: 1
 Score =  225 bits (573), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 115/236 (48%), Positives = 151/236 (63%), Gaps = 7/236 (2%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP-------S 125
           KILVANR EIA+RV R A+E+GI  VA+++  DK ALH   ADES  +G  P        
Sbjct: 16  KILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGP 75
Query: 126 SQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDK 185
            +SYL I  V+  A   G   +HPGYG L+E+  FV+ C + GI FIGP  D++R +G+K
Sbjct: 76  IESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNK 135
Query: 186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDE 245
             AR    + GVP VP ++ L     E  K+A  +G+PVM+KA+ GGGGRGMR+ +   +
Sbjct: 136 VAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEAD 195
Query: 246 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             K + +AK EA AAFG D VYLEK V+  RH+E Q+L D +GNVVH  ERDCS+Q
Sbjct: 196 LAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQ 251

>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea Carboxylase Length = 1236

Iteration: 1
 Score =  210 bits (535), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 102/230 (44%), Positives = 155/230 (67%), Gaps = 1/230 (0%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           E +L+ANRGEIAVR+++T   MGI  VAVYS  DK + HV  AD SV +    ++++YL 
Sbjct: 32  ETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLD 91
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  +++AA   G   + PGYGFL+ENA F + C +  I F+GP+ D+IR +G K +ARE 
Sbjct: 92  IDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREI 151
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
            + A VP VPGS GL++  +EA ++A +L +PVM+K+TAGGGG G++     D+  ++ +
Sbjct: 152 AERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFE 210
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             + +  + FG+ GV++E++V N RH+E Q++ D +G  +  GERDCS+Q
Sbjct: 211 TVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQ 260

>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex Length = 655

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 110/230 (47%), Positives = 154/230 (66%)
Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +++LVANRGEIA RV+R+A  +GI  VAV+S ID+ A HV  AD +V +G A  + SYL 
Sbjct: 9   QRLLVANRGEIACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLR 68
Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
              +++AA++ G   +HPGYGFL+ENA F   C E G+ F+GP   +I  MG KS A+  
Sbjct: 69  GDRIIAAALASGAQAIHPGYGFLSENADFARACEEAGLLFLGPPAAAIDAMGSKSAAKAL 128
Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M+ AGVP VPG  G  Q  E   + A  +G+PV++KA AGGGG+GM++ +   E  + L 
Sbjct: 129 MEEAGVPLVPGYHGEAQDLETFRREAGRIGYPVLLKAAAGGGGKGMKVVEREAELAEALS 188
Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
            A+ EA AAFG+  + +EKY+  PRH+E QV AD++G+ ++  ERDCSIQ
Sbjct: 189 SAQREAKAAFGDARMLVEKYLLKPRHVEIQVFADRHGHCLYLNERDCSIQ 238

>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1, Biotin Carboxylase (Bc) Domain Length = 540

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 138/267 (51%), Gaps = 41/267 (15%)
Query: 72  EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+    ++EM      I  V + +  D   +A ++K+AD  V +
Sbjct: 42  EKVLIANNGIAAVKCMRSIRRWSYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 101
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  +L  A       +  G+G  +EN    E+  ++GI F+GP   ++ 
Sbjct: 102 PGGPNNNNYANVELILDIAKRIPVQAVWAGWGHASENPKLPELLLKNGIAFMGPPSQAMW 161
Query: 181 IMGDKSTARETMKNAGVPTVPGS--------------------------DGLLQSTEEAV 214
            +GDK  +    + AG+PT+P S                           G ++  ++ +
Sbjct: 162 ALGDKIASSIVAQTAGIPTLPWSGSGLRVDWQENDFSKRILNVPQELYEKGYVKDVDDGL 221
Query: 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274
           + A+E+G+PVMIKA+ GGGG+G+R     D+F  L +Q ++E   +     +++ +  + 
Sbjct: 222 QAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEVPGS----PIFVMRLAKQ 277
Query: 275 PRHIEFQVLADKYGNVVHFGERDCSIQ 301
            RH+E Q+LAD+YGN +    RDCS+Q
Sbjct: 278 SRHLEVQILADQYGNAISLFGRDCSVQ 304

>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 Length = 573

Iteration: 1
 Score =  128 bits (322), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 42/268 (15%)
Query: 72  EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+    A+EM      I  V + +  D   +A ++K+AD  V +
Sbjct: 51  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 110
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 111 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 170
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 171 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 230
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE   +     ++L K  Q
Sbjct: 231 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 286
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           + RH+E Q+LAD+YGN V    RDCSIQ
Sbjct: 287 HARHLEVQILADQYGNAVSLFGRDCSIQ 314

>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa Carboxylase 2 (Acc2) In Complex With Soraphen A Length = 540

Iteration: 1
 Score =  128 bits (322), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 42/268 (15%)
Query: 72  EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+    A+EM      I  V + +  D   +A ++K+AD  V +
Sbjct: 41  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 160
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE   +     ++L K  Q
Sbjct: 221 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 276
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           + RH+E Q+LAD+YGN V    RDCSIQ
Sbjct: 277 HARHLEVQILADQYGNAVSLFGRDCSIQ 304

>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With Soraphen A Length = 587

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 42/268 (15%)
Query: 72  EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+    A+EM      I  V + +  D   +A ++K+AD  V +
Sbjct: 57  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 116
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 117 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE   +     ++L K  Q
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 292
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           + RH+E Q+LAD+YGN V    RDCSIQ
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQ 320

>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2 Length = 587

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 42/268 (15%)
Query: 72  EKILVANRGEIAVRVIRT----AHEM-----GIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+    A+EM      I  V + +  D   +A ++K+AD  V +
Sbjct: 57  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 116
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 117 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176
Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236
Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE   +     ++L K  Q
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGS----PIFLMKLAQ 292
Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ 301
           + RH+E Q+LAD+YGN V    RDCSIQ
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQ 320

>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae Length = 553

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 41/266 (15%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIP-----------CVAVYSTIDKDALHVKLADESVCIG 121
           KIL+AN G  AV+ IR+  +                +A    ++ +A ++++AD+ + + 
Sbjct: 48  KILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP 107
Query: 122 EAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDSI 179
              ++ +Y  +  ++  A       +  G+G  +EN +  E   +    + FIGP  +++
Sbjct: 108 GGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAM 167
Query: 180 RIMGDKSTARETMKNAGVPTVPGS-------------------DGLLQ-----STEEAVK 215
           R +GDK ++    ++A VP +P S                   D + Q     S E+ ++
Sbjct: 168 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ 227
Query: 216 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275
            A  +GFPVMIKA+ GGGG+G+R  +  ++F+ L  QA +E   +     +++ K     
Sbjct: 228 KAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRA 283
Query: 276 RHIEFQVLADKYGNVVHFGERDCSIQ 301
           RH+E Q+LAD+YG  +    RDCS+Q
Sbjct: 284 RHLEVQLLADQYGTNISLFGRDCSVQ 309

>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl- Coenzyme A Carboxylase From Saccharomyces Cerevisiae In Complex With Soraphen A Length = 554

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 131/266 (49%), Gaps = 41/266 (15%)
Query: 73  KILVANRGEIAVRVIRTAHEMGIP-----------CVAVYSTIDKDALHVKLADESVCIG 121
           KIL+AN G  AV+ IR+  +                +A    ++ +A ++++AD+ + + 
Sbjct: 49  KILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVP 108
Query: 122 EAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDSI 179
              ++ +Y  +  ++  A       +  G+G  +EN +  E   +    + FIGP  +++
Sbjct: 109 GGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAM 168
Query: 180 RIMGDKSTARETMKNAGVPTVPGS-------------------DGLLQ-----STEEAVK 215
           R +GDK ++    ++A VP +P S                   D + Q     S E+ ++
Sbjct: 169 RSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ 228
Query: 216 LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP 275
            A  +GFPVMIKA+ GGGG+G+R  +  ++F+ L  QA +E   +     +++ K     
Sbjct: 229 KAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS----PIFIMKLAGRA 284
Query: 276 RHIEFQVLADKYGNVVHFGERDCSIQ 301
           RH+E Q+LAD+YG  +    RDCS+Q
Sbjct: 285 RHLEVQLLADQYGTNISLFGRDCSVQ 310

>pdb|2CQY|A Chain A, Solution Structure Of B Domain From Human Propionyl-Coa Carboxylase Alpha Subunit Length = 108

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKE 242
           GDK  ++   K A V T+PG DG+++  EEAV++A E+G+PVMIKA+AGGGG+GMR+A +
Sbjct: 7   GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWD 66
Query: 243 PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHI 278
            +E     + +  EAA++FG+D + +EK++ NPRHI
Sbjct: 67  DEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHI 102

>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL 206
           LH  YG   E+          GI + G N  S  I  DK+ +++ ++  G+ T P    L
Sbjct: 63  LHGKYG---EDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIET-PDWIEL 118
Query: 207 LQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG- 265
            +  +      D+LGFP+++K  +GG   G+++  + DE +  L+         F  D  
Sbjct: 119 TKXEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLE-------TVFEWDSE 171
Query: 266 VYLEKYVQ 273
           V +EKY++
Sbjct: 172 VVIEKYIK 179

>pdb|3VPD|A Chain A, Lysx From Thermus Thermophilus Complexed With Amp-pnp Length = 281

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
            P+ I   GDK      +  AG+P       L    EEA++L +  G+PV++K   G  G
Sbjct: 79  RPEVIEACGDKWATSVALAKAGLPQ--PKTALATDREEALRLMEAFGYPVVLKPVIGSWG 136
Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADK 286
           R   LAK  D           E    F +   Y+++YV+ P R I   V+ ++
Sbjct: 137 R--LLAKVTDRAAAEALLEHKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187

>pdb|2YRW|A Chain A, Crystal Structure Of Gar Synthetase From Geobacillus Kaustophilus Length = 451

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           V+     G+   GP+  +  I G K+ A+E MK  G+PT         S EEA    ++ 
Sbjct: 100 VDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTA--DHAAFTSYEEAKAYIEQK 157
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEF 280
           G P++IKA     G+G+ +A+  +E +   + A  +         V +E+Y++     EF
Sbjct: 158 GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLEGE---EF 214
Query: 281 QVLADKYGNVVH 292
             +A   G  V+
Sbjct: 215 SFMAFVNGEKVY 226

>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide Formyl Transferase (Ph0318) From Pyrococcus Horikoshii Ot3 Length = 433

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 40/237 (16%)
Query: 68  TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-------KLADESVCI 120
           T   +KIL+   GE+   +   A  +G+  VAV    +  A+ V        + D+    
Sbjct: 16  TDSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLW 75
Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
                 +   +IP + +  +         GY                   F+ PN  +  
Sbjct: 76  SVVEREKPDAIIPEIEAINLDALFEFEKDGY-------------------FVVPNARATW 116
Query: 181 IMGDKSTARETM-KNAGVPTVPGSDGLLQST-EEAVKLADELGFPVMIKATAGGGGRGMR 238
           I   +   RET+ K A VPT   S  +  +T +E  +  +++G+P   KA     G+G  
Sbjct: 117 IAMHRERLRETLVKEAKVPT---SRYMYATTLDELYEACEKIGYPCHTKAIMSSSGKGSY 173
Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
             K P++  K  ++AK++A  +        EK +    HI+F V   +   V HF E
Sbjct: 174 FVKGPEDIPKAWEEAKTKARGS-------AEKIIVE-EHIDFDVEVTELA-VRHFDE 221

>pdb|1UC8|A Chain A, Crystal Structure Of A Lysine Biosynthesis Enzyme, Lysx, From Thermus Thermophilus Hb8 Length = 280

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)
Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG 234
            P+ I   GDK      +  AG+P       L    EEA++L +  G+PV++K   G  G
Sbjct: 79  RPEVIEACGDKWATSVALAKAGLPQ--PKTALATDREEALRLMEAFGYPVVLKPVIGSWG 136
Query: 235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADK 286
           R   LA               E    F +   Y+++YV+ P R I   V+ ++
Sbjct: 137 R--LLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGER 187

>pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 1073

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  IG   D+I    D+      MK  G+ T     G+  + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           I+ +   GG G  +A   +EF ++  +    +        + +++ +   +  E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQVIE---IHTHTEIKL 313
           K  N +      CSI+  +   IHT   I +
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITV 250

>pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 1073

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  IG   D+I    D+      MK  G+ T     G+  + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           I+ +   GG G  +A   +EF ++  +    +        + +++ +   +  E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQVIE---IHTHTEIKL 313
           K  N +      CSI+  +   IHT   I +
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITV 250

>pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With Complexed With The Allosteric Ligand Imp Length = 1073

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 13/151 (8%)
Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  IG   D+I    D+      MK  G+ T     G+  + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLET--ARSGIAHTMEEALAVAADVGFPCI 167
Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           I+ +   GG G  +A   +EF ++  +    +        + +++ +   +  E +V+ D
Sbjct: 168 IRPSFTMGGSGGGIAYNREEFEEICARGLDLSP----TKELLIDESLIGWKEYEMEVVRD 223
Query: 286 KYGNVVHFGERDCSIQVIE---IHTHTEIKL 313
           K  N +      CSI+  +   IHT   I +
Sbjct: 224 KNDNCIIV----CSIENFDAMGIHTGDSITV 250

>pdb|2YW2|A Chain A, Crystal Structure Of Gar Synthetase From Aquifex Aeolicus In Complex With Atp Length = 424

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           V+   + G+   GPN ++ ++ G K+ A+  MK  G+PT      +    E+A +  +++
Sbjct: 79  VDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYE--VFTDFEKAKEYVEKV 136
Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           G P+++KA     G+G  + +  ++ ++ L +  ++      ++ V +E++++
Sbjct: 137 GAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189

>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase Length = 452

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 165 REHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV 224
           R  G+   GP  ++ ++   K  A+E M   G+PT           EEA        FP 
Sbjct: 109 RSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKA--FTKPEEACSFILSADFPA 166
Query: 225 MI-KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
           ++ KA+    G+G+ +AK  +E  K +Q+   E A     + + +E+ +
Sbjct: 167 LVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELL 215

>pdb|3K5I|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Synthase From Aspergillus Clavatus In Complex With Adp And 5- Aminoimadazole Ribonucleotide Length = 403

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TA 230
           I P+  +IR + +K   +E ++  G+P     + +  +  E  K+ ++LG+P+M+K+ T 
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY 271
              GRG       D+          EA  A  +  +Y EK+
Sbjct: 171 AYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKW 203

>pdb|3AX6|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole Ribonucleotide Synthetase From Thermotoga Maritima Length = 380

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG 231
           I P+P ++ I+ DK   +E +K  G+P VP    L++  E  V+   E GFPV+ KA  G
Sbjct: 88  IHPSPYTLEIIQDKFVQKEFLKKNGIP-VPEYK-LVKDLESDVR---EFGFPVVQKARKG 142
Query: 232 G-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
           G  GRG+ + K   +   L    K E          YLE++V+  + +   V  ++ G +
Sbjct: 143 GYDGRGVFIIKNEKD---LENAIKGET---------YLEEFVEIEKELAVXVARNEKGEI 190

>pdb|3K5H|A Chain A, Crystal Structure Of Carboxyaminoimidazole Ribonucleotide Synthase From Asperigillus Clavatus Complexed With Atp Length = 403

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 172 IGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA-TA 230
           I P+  +IR + +K   +E ++  G+P     + +  +  E  K+ ++LG+P+M+K+ T 
Sbjct: 111 IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTM 170
Query: 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKY 271
              GRG       D+          EA  A  +  +Y EK+
Sbjct: 171 AYDGRGNFRVNSQDDI--------PEALEALKDRPLYAEKW 203

>pdb|2XD4|A Chain A, Nucleotide-Bound Structures Of Bacillus Subtilis Glycinamide Ribonucleotide Synthetase Length = 422

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 160 FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE 219
            V+   + G++  GP+  +  I G K  A++ MK   +PT         S +EA     E
Sbjct: 78  LVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYE--TFTSFDEAKAYVQE 135
Query: 220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE 279
            G P++IKA     G+G+ +A   +E +  L     +      +  V +E+Y+      E
Sbjct: 136 KGAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLSGE---E 192
Query: 280 FQVLADKYGNVVH 292
           F ++A   G  V+
Sbjct: 193 FSLMAFVKGEKVY 205

>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus Complexed With Amp And Aicar Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 83  AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR 142
           A+++++ A + G   +A  S+  K  L+ K    +    E    +  LL  N+ +  +  
Sbjct: 13  ALQILKGAKDEGFETIAFGSSKVK-PLYTKYFPVADYFIEEKYPEEELL--NLNAVVVPT 69
Query: 143 GCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG 202
           G  + H G          +E+     + + G N   +R   D++  R+ +K AG+  VP 
Sbjct: 70  GSFVAHLG----------IELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGI-RVP- 116
Query: 203 SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248
                    E  +  D++  PV++K     GG+G  LAK+P++F +
Sbjct: 117 ---------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWR 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	1e-166
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	1e-166
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	1e-164
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	1e-163
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	1e-154
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	1e-144
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	1e-141
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	1e-141
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	1e-140
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	1e-135
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	1e-133
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	1e-132
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	1e-132
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	2e-63
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	1e-24
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	3e-19
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	6e-16
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	1e-09
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	1e-09
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	1e-09
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	1e-07
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	2e-09
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	3e-09
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	1e-08
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	1e-08
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	2e-08
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	4e-08
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	5e-08
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	6e-08
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	8e-08
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	2e-07
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	4e-07
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	4e-07
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	5e-07
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	6e-07
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	7e-07
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	9e-07
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	1e-06
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	1e-06
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	3e-06
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	3e-06
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	7e-06
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	2e-05
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	2e-05
2p0a_A	344	Synapsin-3, synapsin III; neurotransmitter release	3e-05
1i7n_A	309	Synapsin II; synapse, phosphorylation, neuropeptid	4e-05
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	2e-04
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	2e-04
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	2e-04
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	5e-04
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	5e-04

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451

 Score =  468 bits (1208), Expect = e-166
 Identities = 128/239 (53%), Positives = 171/239 (71%), Gaps = 5/239 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +K+L+ANRGEIAVR+IR   ++GI  VA+YS  DKDALH ++ADE+ C+G   S  SYL 
Sbjct: 2   KKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLN 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IPN+LS A S GC  +HPGYGFLAENA F E+C    + FIGP+  SI+ MG K  A+  
Sbjct: 62  IPNILSIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M  A VP VPGSDGL++   EA K+A ++G+PV+IKATAGGGG+G+R+A++  E     +
Sbjct: 122 MIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGFR 181

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
             + EA  AFGN G+Y+EK+++N RHIE Q++ D YGNV+H GERDC+IQ     ++E 
Sbjct: 182 MTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEE 240

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* Length = 446

 Score =  468 bits (1206), Expect = e-166
 Identities = 129/238 (54%), Positives = 172/238 (72%), Gaps = 5/238 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           + IL+ANRGEIA+R +RT  EMG   + VYS  DKDAL++K AD S+CIG+A SS+SYL 
Sbjct: 7   KSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLN 66

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP +++AA       + PGYGFL+EN  FVE+C +H I FIGP+ +++ +M DKS A++ 
Sbjct: 67  IPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQV 126

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           M+ AGVP +PGSDG L   E A KLA E+G+PV++KA AGGGGRGMR+ +   +  K   
Sbjct: 127 MQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYW 186

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            A+SEA  AFG+  +Y+EKY+QNPRHIE QV+ D +GNV+H GERDCS+Q     +IE
Sbjct: 187 SAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIE 244

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 451

 Score =  463 bits (1193), Expect = e-164
 Identities = 134/239 (56%), Positives = 175/239 (73%), Gaps = 6/239 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
            K+LVANRGEIAVR+IR   E+GIP VA+Y+ ++  A HVKLADE+  IG  P   +YL 
Sbjct: 3   NKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPL-DTYLN 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
              +++ A+  G   +HPGYGFLAENA F +MC E GI FIGP+   I +MGDK+ ++E 
Sbjct: 62  KQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEV 121

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
           MK AGVP VPGSDG+L+S EEA  LA E+G+PV++KATAGGGGRG+R+ +  +E VK  +
Sbjct: 122 MKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYE 181

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
           QA  EA  AFG   + LEK+++NP+HIE+QVL DK+GNV+H GERDCSIQ     ++EI
Sbjct: 182 QASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVEI 240

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... Length = 449

 Score =  461 bits (1189), Expect = e-163
 Identities = 127/239 (53%), Positives = 168/239 (70%), Gaps = 6/239 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 3   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MGDK +A   
Sbjct: 63  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAA 122

Query: 192 MKNAGVPTVPGSDGLLQST-EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ +   E  + +
Sbjct: 123 MKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSI 182

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
              ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q     V+E
Sbjct: 183 SMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVE 241

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} Length = 461

 Score =  438 bits (1130), Expect = e-154
 Identities = 116/240 (48%), Positives = 157/240 (65%), Gaps = 6/240 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSS-QSYL 130
            K+LVANRGEIA+RV R   E+GI  VA+YS  D  + H   ADE+  +GE     ++YL
Sbjct: 7   RKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYL 66

Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A +     +HPGYGFL+EN  F + CRE GI FIGPN + + + GDK  AR 
Sbjct: 67  DIEGIIEIAKAHDVDAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARH 126

Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
              NAG+P +PGSDG +   E+ V  A+  G+P++IKA  GGGGRGMR+ +   E  +  
Sbjct: 127 AAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAF 186

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
           ++AKSEA AAFG+D VY+EK ++NP+HIE Q+L D  GN+VH  ERDCS+Q     V+E+
Sbjct: 187 ERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQKVVEV 246

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Length = 681

 Score =  422 bits (1086), Expect = e-144
 Identities = 123/238 (51%), Positives = 173/238 (72%), Gaps = 5/238 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
            KIL+ANRGEIA RVI+TA +MGI  VA+YS  DK ALHV++ADE+V IG  P++QSY++
Sbjct: 3   NKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIV 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  V++A  + G   +HPGYGFL+EN+ F E     G+ F+GP   +I  MGDK T+++ 
Sbjct: 63  IDKVMAAIRATGAQAVHPGYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKI 122

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
            + A V TVPG  GL++  +EAVK+++++G+PVMIKA+AGGGG+GMR+A    E  +  Q
Sbjct: 123 AQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQ 182

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            +K+EAA +FG+D +++EK+V  PRHIE QVL D +GN ++ GER+CSIQ     V+E
Sbjct: 183 SSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVE 240

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score =  427 bits (1099), Expect = e-141
 Identities = 117/240 (48%), Positives = 160/240 (66%), Gaps = 6/240 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGE-APSSQSYL 130
           +K+LVANRGEIA+R+ R A E+ I  VA+YS  DK +LH   ADES  +G     ++SYL
Sbjct: 5   KKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYL 64

Query: 131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
            I  ++  A       +HPGYGFL+EN  F   C E GI FIGP+ + + + GDK  AR 
Sbjct: 65  NIERIIDVAKQANVDAIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKART 124

Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
           T   A +P +PG+DG ++S E A + A+E GFP+MIKAT+GGGG+GMR+ +E  E     
Sbjct: 125 TAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAF 184

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIEI 305
            +AKSEA  +FGN  VY+E+Y+ NP+HIE QV+ D++GN+VH  ERDCS+Q     V+E+
Sbjct: 185 HRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEV 244

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score =  426 bits (1097), Expect = e-141
 Identities = 117/246 (47%), Positives = 154/246 (62%), Gaps = 12/246 (4%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAP------- 124
            KILVANR EIA+RV R A+E+GI  VA+++  DK ALH   ADES  +G  P       
Sbjct: 15  SKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLG 74

Query: 125 SSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD 184
             +SYL I  V+  A   G   +HPGYG L+E+  FV+ C + GI FIGP  D++R +G+
Sbjct: 75  PIESYLSIDEVIRVAKLSGADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGN 134

Query: 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD 244
           K  AR    + GVP VP ++ L     E  K+A  +G+PVM+KA+ GGGGRGMR+ +   
Sbjct: 135 KVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGYPVMLKASWGGGGRGMRVIRSEA 194

Query: 245 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ--- 301
           +  K + +AK EA AAFG D VYLEK V+  RH+E Q+L D +GNVVH  ERDCS+Q   
Sbjct: 195 DLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQRRN 254

Query: 302 --VIEI 305
             V+E 
Sbjct: 255 QKVVER 260

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score =  426 bits (1098), Expect = e-140
 Identities = 105/238 (44%), Positives = 158/238 (66%), Gaps = 6/238 (2%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           E +L+ANRGEIAVR+++T   MGI  VAVYS  DK + HV  AD SV +    ++++YL 
Sbjct: 32  ETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLD 91

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARET 191
           I  +++AA   G   + PGYGFL+ENA F + C +  I F+GP+ D+IR +G K +ARE 
Sbjct: 92  IDKIINAAKKTGAQAIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREI 151

Query: 192 MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ 251
            + A VP VPGS GL++  +EA ++A +L +PVM+K+TAGGGG G++     D+  ++ +
Sbjct: 152 AERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFE 210

Query: 252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
             + +  + FG+ GV++E++V N RH+E Q++ D +G  +  GERDCS+Q     VIE
Sbjct: 211 TVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIE 268

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Length = 554

 Score =  387 bits (997), Expect = e-133
 Identities = 74/275 (26%), Positives = 131/275 (47%), Gaps = 46/275 (16%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGI-----------PCVAVYSTIDKDALHVKLADESVCI 120
            KIL+AN G  AV+ IR+  +                +A    ++ +A ++++AD+ + +
Sbjct: 48  SKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEV 107

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDS 178
               ++ +Y  +  ++  A       +  G+G  +EN +  E   +    + FIGP  ++
Sbjct: 108 PGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNA 167

Query: 179 IRIMGDKSTARETMKNAGVPTVPGS------------------------DGLLQSTEEAV 214
           +R +GDK ++    ++A VP +P S                         G   S E+ +
Sbjct: 168 MRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGL 227

Query: 215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN 274
           + A  +GFPVMIKA+ GGGG+G+R  +  ++F+ L  QA +E         +++ K    
Sbjct: 228 QKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAGR 283

Query: 275 PRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
            RH+E Q+LAD+YG  +    RDCS+Q     +IE
Sbjct: 284 ARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIE 318

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A Length = 540

 Score =  386 bits (993), Expect = e-132
 Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 47/276 (17%)

Query: 72  EKILVANRGEIAVRVIRTA---------HEMGIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+          +E  I  V + +  D   +A ++K+AD  V +
Sbjct: 41  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 100

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 101 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 160

Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 161 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220

Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE         ++L K  Q
Sbjct: 221 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKLAQ 276

Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
           + RH+E Q+LAD+YGN V    RDCSIQ     ++E
Sbjct: 277 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVE 312

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A* Length = 587

 Score =  387 bits (996), Expect = e-132
 Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 47/276 (17%)

Query: 72  EKILVANRGEIAVRVIRTA---------HEMGIPCVAVYSTID--KDALHVKLADESVCI 120
           EK+L+AN G  AV+ +R+          +E  I  V + +  D   +A ++K+AD  V +
Sbjct: 57  EKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPV 116

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIR 180
              P++ +Y  +  ++  A       +  G+G  +EN    E+  ++G+ F+GP  +++ 
Sbjct: 117 PGGPNNNNYANVELIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMW 176

Query: 181 IMGDKSTARETMKNAGVPTVPGS---------------------------DGLLQSTEEA 213
            +GDK  +    +   VPT+P S                            G ++  +E 
Sbjct: 177 ALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236

Query: 214 VKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           ++ A+ +GFP+MIKA+ GGGG+G+R A+  ++F  L +Q +SE         ++L K  Q
Sbjct: 237 LEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSE----IPGSPIFLMKLAQ 292

Query: 274 NPRHIEFQVLADKYGNVVHFGERDCSIQ-----VIE 304
           + RH+E Q+LAD+YGN V    RDCSIQ     ++E
Sbjct: 293 HARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVE 328

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 108

 Score =  195 bits (497), Expect = 2e-63
 Identities = 48/106 (45%), Positives = 72/106 (67%)

Query: 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGM 237
           S    GDK  ++   K A V T+PG DG+++  EEAV++A E+G+PVMIKA+AGGGG+GM
Sbjct: 2   SSGSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGM 61

Query: 238 RLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL 283
           R+A + +E     + +  EAA++FG+D + +EK++ NPRHI     
Sbjct: 62  RIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDNPRHISGPSS 107

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} Length = 403

 Score =  102 bits (255), Expect = 1e-24
 Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 24/223 (10%)

Query: 73  KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLI 132
           ++L+   G   + + + A E+GI  +A  +  +     + LADE   +            
Sbjct: 9   RLLILGAGRGQLGLYKAAKELGIHTIAG-TMPNAHKPCLNLADEISYM-------DISNP 60

Query: 133 PNVLSAAISRG--CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARE 190
             V                       +   +  C +  +  +G N ++  + GDK   +E
Sbjct: 61  DEVEQKVKDLNLDGAATCCL-DTGIVSLARI--CDKENL--VGLNEEAAIMCGDKYKMKE 115

Query: 191 TMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLL 250
             K   V T      ++++  E     + L  PV++KAT   G +G+ +AK+ +E +   
Sbjct: 116 AFKKYNVNTARH--FVVRNENELKNALENLKLPVIVKATDLQGSKGIYIAKKEEEAIDGF 173

Query: 251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHF 293
            +  +        D   +E++++     EF   A  Y N V F
Sbjct: 174 NETMNLTK----RDYCIVEEFIEGY---EFGAQAFVYKNDVLF 209

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum} Length = 331

 Score = 85.7 bits (212), Expect = 3e-19
 Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 31/235 (13%)

Query: 71  QEKILV--ANRGEIAVRVIRTAHEMGIPCVAVYST-IDKDALHVKLADESVCIGEAPSSQ 127
           +  +L+  A R    V       + G     V +      A  + +AD+   +   P   
Sbjct: 4   KPHLLITSAGRRAKLVEYFVKEFKTGR----VSTADCSPLASALYMADQHYIV---PKID 56

Query: 128 SYLLIPNVLSAAISRGCTMLHPGYG----FLAENAVFVEMCREHGINFIGPNPDSIRIMG 183
               I ++L+     G T L          LA+     E  +  G+  I     +  +  
Sbjct: 57  EVEYIDHLLTLCQDEGVTALLTLIDPELGLLAQAT---ERFQAIGVTVIVSPYAACELCF 113

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK T  E     G+           ++ E    A E+  PV +K   G     +R  +  
Sbjct: 114 DKYTMYEYCLRQGIAHART--YATMASFEEALAAGEVQLPVFVKPRNGSASIEVRRVETV 171

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY-GNVVHFGERD 297
           +E  +L  +          N  + +++ +     +      D   G V     ++
Sbjct: 172 EEVEQLFSK----------NTDLIVQELLVGQ-ELGVDAYVDLISGKVTSIFIKE 215

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis} Length = 474

 Score = 76.9 bits (189), Expect = 6e-16
 Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)

Query: 173 GPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
           G    +     DK+  R+    AGV ++      + + E+     +E+G P+++K T   
Sbjct: 128 GAGVQAAENARDKNKMRDAFNKAGVKSIKN--KRVTTLEDFRAALEEIGTPLILKPTYLA 185

Query: 233 GGRGMRLAKEPDEFVKLLQQA------KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
              G+ L  + +       +        +   A         E+++Q      +Q    
Sbjct: 186 SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGY 244

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus} Length = 369

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 15/123 (12%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
           P   ++ +  D+   +   +  GVPT P     +   E+  +    +G P ++K   GG 
Sbjct: 86  PPAKALEVAQDRLREKTFFQGLGVPTPPFHP--VDGPEDLEEGLKRVGLPALLKTRRGGY 143

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DKYGNV 290
            G+G  L +  +E          EA  A G  G+ LE +V  P   E  +LA   + G V
Sbjct: 144 DGKGQALVRTEEEA--------LEALKALGGRGLILEGFV--PFDREVSLLAVRGRTGEV 193

Query: 291 VHF 293
             +
Sbjct: 194 AFY 196

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
           P+  +IR + +K   +E ++  G+P     + +  +  E  K+ ++LG+P+M+K+     
Sbjct: 113 PSWQAIRTIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGYPLMLKSKTMAY 172

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            GRG       D+          EA  A  +  +Y EK+ 
Sbjct: 173 DGRGNFRVNSQDDI--------PEALEALKDRPLYAEKWA 204

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073

 Score = 58.3 bits (142), Expect = 1e-09
 Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 27/152 (17%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
           E G+  IG   D+I    D+      MK  G+     S G+  + EEA+ +A ++GFP +
Sbjct: 110 EFGVTMIGATADAIDKAEDRRRFDVAMKKIGLE-TARS-GIAHTMEEALAVAADVGFPCI 167

Query: 226 IKA--TAGGGGRGMRLAKEPDEFVKLLQQA-----KSEAAAAFGNDGVYLEKYVQNPRHI 278
           I+   T GG G G+  A   +EF ++  +        E         + +++ +   +  
Sbjct: 168 IRPSFTMGGSGGGI--AYNREEFEEICARGLDLSPTKE---------LLIDESLIGWKEY 216

Query: 279 EFQVLADKYGNVVHFGERDCSIQVIE---IHT 307
           E +V+ DK  N +      CSI+  +   IHT
Sbjct: 217 EMEVVRDKNDNCIIV----CSIENFDAMGIHT 244

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A* Length = 1073

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 6/120 (5%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM 225
             G+  IG +PD+I    D+   +  ++   +         + + E AV+ A E+G+P++
Sbjct: 656 AAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPAN--ATVTAIEMAVEKAKEIGYPLV 713

Query: 226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD 285
           ++A+   GGR M +  +  +  +  Q     A +   +  V L+ ++ +   ++   + D
Sbjct: 714 VRASYVLGGRAMEIVYDEADLRRYFQ----TAVSVSNDAPVLLDHFLDDAVEVDVDAICD 769

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A* Length = 334

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 13/117 (11%)

Query: 161 VEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL 220
           +E+     + + G N   +R   D++  R+ +K AG+              E  +  D++
Sbjct: 78  IELVENMKVPYFG-NKRVLRWESDRNLERKWLKKAGIRVP-----------EVYEDPDDI 125

Query: 221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH 277
             PV++K     GG+G  LAK+P++F +  ++             + +++YV     
Sbjct: 126 EKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DLKNIQIQEYVLGVPV 181

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A* Length = 361

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 20/196 (10%)

Query: 83  AVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS 141
           ++ +++ A   G   V +            K+AD+ + +       ++  I N       
Sbjct: 29  SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYV------DNFSDIKNEEIQEKL 82

Query: 142 RGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP 201
           R    +   +G          +     +   G N   +R   ++S   + ++ AG+    
Sbjct: 83  RELNSIVVPHGSFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVP- 140

Query: 202 GSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQ-AKSEAAAA 260
                     +  +  +++   V++K     GGRG  +A   +EF K  +   K      
Sbjct: 141 ----------KKYESPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTD 190

Query: 261 FGNDGVYLEKYVQNPR 276
                 ++E+YV    
Sbjct: 191 EDIANAHIEEYVVGTN 206

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* Length = 433

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 174 PNPDSIRIMGDKSTARET-MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
           PN  +  I   +   RET +K A VPT         + +E  +  +++G+P   KA    
Sbjct: 110 PNARATWIAMHRERLRETLVKEAKVPTSR--YMYATTLDELYEACEKIGYPCHTKAIMSS 167

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            G+G    K P++  K  ++AK    A    + + +E+++
Sbjct: 168 SGKGSYFVKGPEDIPKAWEEAK--TKARGSAEKIIVEEHI 205

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* Length = 389

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
                +    ++ T +  ++ AG+P        +Q+ E+  +   EL +P ++K T GG 
Sbjct: 102 QGSQLLSKTQNRFTEKNAIEKAGLPVATYRL--VQNQEQLTEAIAELSYPSVLKTTTGGY 159

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DKYGNV 290
            G+G  + +   +          EA          LEK+V  P   E  V+      G  
Sbjct: 160 DGKGQVVLRSEADV--------DEARKLANAAECILEKWV--PFEKEVSVIVIRSVSGET 209

Query: 291 VHF 293
             F
Sbjct: 210 KVF 212

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A* Length = 280

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 30/191 (15%)

Query: 85  RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC 144
            +   A  +G+P              V +    + +GE P     + +      + SRG 
Sbjct: 15  MLFERAEALGLPYK-----------KVYVPALPMVLGERPKELEGVTVALERCVSQSRGL 63

Query: 145 TMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD 204
                   +L    + V       +N     P+ I   GDK      +  AG+P  P + 
Sbjct: 64  AAAR----YLTALGIPV-------VN----RPEVIEACGDKWATSVALAKAGLPQ-PKT- 106

Query: 205 GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND 264
            L    EEA++L +  G+PV++K   G  GR +  A               E    F + 
Sbjct: 107 ALATDREEALRLMEAFGYPVVLKPVIGSWGRLL--AXXXXXXXXXXXXXXKEVLGGFQHQ 164

Query: 265 GVYLEKYVQNP 275
             Y+++YV+ P
Sbjct: 165 LFYIQEYVEKP 175

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A* Length = 355

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
            N D   I+ D+ T ++      +PT P    LL    E   + D LG   ++K   GG 
Sbjct: 69  VNRDVFPIIADRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGY 126

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DKYGNV 290
            GRG    +  +           E   A       +E+ +      E  ++      G+ 
Sbjct: 127 DGRGQWRLRANET----------EQLPAECYGECIVEQGI--NFSGEVSLVGARGFDGST 174

Query: 291 VHF 293
           V +
Sbjct: 175 VFY 177

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A Length = 377

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 15/123 (12%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
               +I+++ D+ T +ET+K+AG   VP     ++ + +  K  + LG+P ++K   GG 
Sbjct: 100 QGYQAIQLLQDRLTEKETLKSAGTKVVPFIS--VKESTDIDKAIETLGYPFIVKTRFGGY 157

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DKYGNV 290
            G+G  L     +          E            EKY+      E  +         +
Sbjct: 158 DGKGQVLINNEKDL--------QEGFKLIETSECVAEKYL--NIKKEVSLTVTRGNNNQI 207

Query: 291 VHF 293
             F
Sbjct: 208 TFF 210

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A Length = 419

 Score = 52.6 bits (127), Expect = 6e-08
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVP----GSDGLLQSTEEAVKLADELGFPVMIKAT 229
           P    + +  D+   +  ++ +GVP  P     S   L + ++A     +   P ++K  
Sbjct: 123 PAGRCVAVAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAA---LDAVLPGILKTA 179

Query: 230 AGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DK 286
             G  G+G        E          +A AA G     LEK +  P   E   L     
Sbjct: 180 RLGYDGKGQVRVSTAREA--------RDAHAALGGVPCVLEKRL--PLKYEVSALIARGA 229

Query: 287 YGNVVHF 293
            G    F
Sbjct: 230 DGRSAAF 236

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Length = 750

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL-GFPVMIKATAGGGGRG 236
               M +K   ++ +     P  P  D      +EA+    ++   P+++K  +   G G
Sbjct: 478 VPLAMANKVVTKKILDEKHFP-TPFGD-EFTDRKEALNYFSQIQDKPIVVKPKSTNFGLG 535

Query: 237 MRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           + + K     +   ++A   A     +  + +E+Y++
Sbjct: 536 ISIFKTSAN-LASYEKAIDIAFTE--DSAILVEEYIE 569

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A* Length = 322

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 11/112 (9%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK  ++  +  AGVP VP     ++  E  V        P  +K    G   G+   +  
Sbjct: 118 DKDLSKRVLAQAGVPVVPWV--AVRKGEPPV---VPFDPPFFVKPANTGSSVGISRVERF 172

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
            +    L       A  +      +EK +   R +E  VL + +G     GE
Sbjct: 173 QDLEAAL-----ALAFRYDEK-AVVEKALSPVRELEVGVLGNVFGEASPVGE 218

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 174 PNPDSIRIMGDKSTARET-MKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG 232
           P   + ++  ++   R    +   +PT         S     +   ++G+P ++K     
Sbjct: 102 PCARATKLTMNREGIRRLAAEELQLPTSTYRF--ADSESLFREAVADIGYPCIVKPVMSS 159

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            G+G    +  ++  +  + A+       G   V +E  V
Sbjct: 160 SGKGQTFIRSAEQLAQAWKYAQ--QGGRAGAGRVIVEGVV 197

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori} Length = 367

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 17/133 (12%)

Query: 168 GINFIGPNPDSIRIMG-----DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF 222
            I FIGP      I       +K   +   K+ G+ T+     L +             F
Sbjct: 133 RIAFIGPR-----IEASVLSYNKYLTKLYAKDLGIKTLD-YVLLNEKNRANALDLMNFNF 186

Query: 223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
           P ++K +  G   G+ + KE  E +  L     ++A  +  + V +E ++Q  +      
Sbjct: 187 PFIVKPSNAGSSLGVNVVKEEKELIYAL-----DSAFEYSKE-VLIEPFIQGVKEYNLAG 240

Query: 283 LADKYGNVVHFGE 295
              K      + E
Sbjct: 241 CKIKKDFCFSYIE 253

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A Length = 317

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 184 DKSTARETMKNAGVPTVPGS--DGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241
           DK   +   +  GVPT P             A  +  +LG P+ +K  + G    +   K
Sbjct: 107 DKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVK 166

Query: 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK 286
             D     L       AA      V +EK ++        +  D 
Sbjct: 167 TADALPAAL-----SEAATHDKI-VIVEKSIEGGGEYTACIAGDL 205

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A* Length = 306

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 184 DKSTARETMKNAGVPTVPG-----SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           DK  ++   + AG+P  P      ++     +++ +     LG PV++K +  G   GM 
Sbjct: 96  DKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMS 155

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
                +     L       A     + V +EK++  P   EF V
Sbjct: 156 KVVAENALQDAL-----RLAFQHDEE-VLIEKWLSGP---EFTV 190

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Length = 397

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 13/81 (16%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR----GMRLAKEP 243
           A+E +   GVP  PG   +  + EEA ++A+E G  V+IKA    GGR    G++LA  P
Sbjct: 8   AKEILARYGVPVPPG--KVAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTP 65

Query: 244 DEFVKLLQQAKSEAAAAFGND 264
            E       A  +A A  G +
Sbjct: 66  QE-------AYEKAQAILGMN 79

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} Length = 380

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 22/123 (17%)

Query: 174 PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG- 232
           P+P ++ I+ DK   +E +K  G+P         +  ++      E GFPV+ KA  GG 
Sbjct: 90  PSPYTLEIIQDKFVQKEFLKKNGIPVPE-----YKLVKDLESDVREFGFPVVQKARKGGY 144

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA--DKYGNV 290
            GRG+ + K   +    ++               YLE++V      E  V+   ++ G +
Sbjct: 145 DGRGVFIIKNEKDLENAIKGE------------TYLEEFV--EIEKELAVMVARNEKGEI 190

Query: 291 VHF 293
             +
Sbjct: 191 ACY 193

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A* Length = 307

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DK+ +++ ++  G+ T P    L +  +      D+LGFP+++K  +GG   G+++  + 
Sbjct: 97  DKNISKKILRYEGIET-PDWIELTKMEDLNFDELDKLGFPLVVKPNSGGSSVGVKIVYDK 155

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
           DE + +L     E    + ++ V +EKY++     E   
Sbjct: 156 DELISML-----ETVFEWDSE-VVIEKYIKGE---EITC 185

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1 Length = 377

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 184 DKSTARETMKNAGVPTVPGS--DGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241
           DK+  +E +   G+        D    +     K+  ELG  V +KA   G   G+    
Sbjct: 135 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 194

Query: 242 EPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
             +E+ + L       + +F  D  V +E+ V   R +E  V+ +    V   G 
Sbjct: 195 NAEEYTEAL-------SDSFQYDYKVLIEEAVNGARELEVGVIGNDQPLVSEIGA 242

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Length = 757

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 178 SIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK-LADELGFPVMIKATAGGGGRG 236
           S  IM +K   ++ ++ AG            S E+AV   A      V+IK  +   G G
Sbjct: 483 SPLIMENKVVTKKVLQKAGFNVPQS--VEFTSLEKAVASYALFENRAVVIKPKSTNYGLG 540

Query: 237 MRLAKE----PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ 273
           + + ++     ++F K L+ A  E      +  V +E Y+ 
Sbjct: 541 ITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLV 575

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus} Length = 305

 Score = 45.8 bits (108), Expect = 7e-06
 Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 36/132 (27%)

Query: 166 EHGINFIGPNPDSIRIMGDKSTARETMKNA-GVPTVPGSDGLLQSTEEAVKLADELGFPV 224
           E     +G +  +I +  DK    + ++    VP                     L    
Sbjct: 92  EKYCENLGSSSRAIAVTSDKWELYKKLRGEVQVPQTS---------------LRPLDCKF 136

Query: 225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA 284
           +IK      G G+  + E  +                   G   +++++   ++   +  
Sbjct: 137 IIKPRTACAGEGIGFSDEVPD-------------------GHIAQEFIEG-INLSVSLAV 176

Query: 285 DKYGNVVHFGER 296
            +    +   E+
Sbjct: 177 GEDVKCLSVNEQ 188

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A* Length = 364

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 14/118 (11%)

Query: 184 DKSTARETMKNAGVPTVPG-----SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           DK   ++  ++ G+P +P      S+           + D+L +PV +K    G   G+ 
Sbjct: 129 DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSVGIS 188

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLADKYGNVVHFGE 295
                 E  + +         AF  D  + +E+ V N R IE  VL + Y      GE
Sbjct: 189 KCNNEAELKEGI-------KEAFQFDRKLVIEQGV-NAREIEVAVLGNDYPEATWPGE 238

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B* Length = 343

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 21/129 (16%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DKS      KNAG+ T      ++   +  V  A    +PV +K    G   G++     
Sbjct: 132 DKSLTYIVAKNAGIATPAFW--VINKDDRPV--AATFTYPVFVKPARSGSSFGVKKVNSA 187

Query: 244 DEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV 302
           DE    +        +A   D  + +E+ V +   +   VL +    VV  GE      V
Sbjct: 188 DELDYAI-------ESARQYDSKILIEQAV-SGCEVGCAVLGNSAALVV--GE------V 231

Query: 303 IEIHTHTEI 311
            +I     I
Sbjct: 232 DQIRLQYGI 240

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens} Length = 344

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQST--EEAVKLADELGFPVMIKATAGG 232
           +  S+     K      +        P    L++ T       +     FPV++K     
Sbjct: 121 SLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAH 180

Query: 233 GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG 288
            G G    +   +F  +          A        E ++ +   I  Q +   Y 
Sbjct: 181 AGMGKIKVENQLDFQDITS------VVAMAKTYATTEAFIDSKYDIRIQKIGSNYK 230

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A* Length = 309

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 13/125 (10%)

Query: 168 GINFIGPNPDSIRIMGDKSTARETM----KNAGVPTVPGSDGLLQSTEEAVKLADELGFP 223
           G+  I  + +SI    DK      M    K  G    P  +          ++     FP
Sbjct: 98  GLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYY--PNHREMLTLPTFP 154

Query: 224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL 283
           V++K      G G    +   +F  +          A        E ++     I  Q +
Sbjct: 155 VVVKIGHAHSGMGKVKVENHYDFQDIAS------VVALTQTYATAEPFIDAKYDIRVQKI 208

Query: 284 ADKYG 288
            + Y 
Sbjct: 209 GNNYK 213

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {} Length = 346

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 13/101 (12%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           DKS      ++AG+ T          T +     D+L +PV +K    G   G+      
Sbjct: 132 DKSLTYLVARSAGIATPNF----WTVTADEKIPTDQLTYPVFVKPARSGSSFGVSKVARE 187

Query: 244 DEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVL 283
           ++    +        AA   D  V +E+ V     I   V+
Sbjct: 188 EDLQGAV-------EAAREYDSKVLIEEAV-IGTEIGCAVM 220

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 373

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAV--KLADELGFPVMIKATAGGGGRGMRLAK 241
           DK   ++ +   G+P    +  +L+     +  +  + LG PV +K   GG   G+    
Sbjct: 151 DKEFTKKLLAADGLPVGAYA--VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVS 208

Query: 242 EPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLADKYGNV 290
             D+    +       A A  +D  V +E  + + R +E  VL    G +
Sbjct: 209 SWDQLPAAV-------ARARRHDPKVIVEAAI-SGRELECGVLEMPDGTL 250

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii} Length = 372

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 184 DKSTARETMKNAGVPTVPG---SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLA 240
           +K   +  ++  G+P V     S            L       + +KA + G        
Sbjct: 140 EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPV 199

Query: 241 KEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLAD 285
           K   EF K +          F  D  + +E  +   R IE  VL +
Sbjct: 200 KTETEFTKAV-------KEVFRYDDRLMVEPRI-RGREIECAVLGN 237

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A* Length = 364

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 17/108 (15%)

Query: 184 DKSTARETMKNAGVPTVPG-----SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           DK  A+  +++AG+   P      ++   +      ++   LG P+ +K    G   G+ 
Sbjct: 140 DKDVAKRLLRDAGLNIAPFITLTRTN---RHAFSFAEVESRLGLPLFVKPANQGSSVGVS 196

Query: 239 LAKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLAD 285
                 ++ + +       A AF  D  V +E+ +   R IE  VL +
Sbjct: 197 KVANEAQYQQAV-------ALAFEFDHKVVVEQGI-KGREIECAVLGN 236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 31/213 (14%), Positives = 60/213 (28%), Gaps = 65/213 (30%)

Query: 107 DALHVKLADESV-CIGEAPS--SQSYLLI-------PNVLSAAISRGCTMLHPGYGFLAE 156
           D     L+ E +  I  +    S +  L          ++   +     +L   Y FL  
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE---EVLRINYKFLMS 96

Query: 157 NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP----TVPGSDGLLQSTEE 212
                   R+       P+  +          R+ + N         V      L+  + 
Sbjct: 97  P--IKTEQRQ-------PSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV 272
            ++L       V+I    G  G G                 K+  A       V L   V
Sbjct: 144 LLELRPAKN--VLID---GVLGSG-----------------KTWVALD-----VCLSYKV 176

Query: 273 QNPRHIEFQVLADKYGNVVHFGERDCSIQVIEI 305
           Q    ++F++    +   ++    +    V+E+
Sbjct: 177 Q--CKMDFKIF---W---LNLKNCNSPETVLEM 201

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii} Length = 238

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230
           A++ +K  G+P       L ++ +EA++ A E+G+PV++K  +
Sbjct: 25  AKQVLKAYGLPVPEE--KLAKTLDEALEYAKEIGYPVVLKLMS 65

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A* Length = 386

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 24/133 (18%)

Query: 184 DKSTARETMKNAGVPTVPG----SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239
           DK  A+  +++A +   P           +  + +    +LG P+ +K    G   G+  
Sbjct: 159 DKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTL--IAQLGLPLFVKPANQGSSVGVSQ 216

Query: 240 AKEPDEFVKLLQQAKSEAAAAFGNDG-VYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC 298
            +  D        A    A A   D  V +E  V   R IE  VL    GN         
Sbjct: 217 VRTADA----FAAA---LALALAYDHKVLVEAAV-AGREIECAVL----GN----AVPHA 260

Query: 299 SIQVIEIHTHTEI 311
           S+   E+  H   
Sbjct: 261 SV-CGEVVVHDAF 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
3ouz_A	446	Biotin carboxylase; structural genomics, center fo	100.0
3jrx_A	587	Acetyl-COA carboxylase 2; BC domain, soraphen A, a	100.0
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	100.0
3glk_A	540	Acetyl-COA carboxylase 2; ATP binding, alternative	100.0
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	100.0
2dzd_A	461	Pyruvate carboxylase; biotin carboxylase, ligase;	100.0
1ulz_A	451	Pyruvate carboxylase N-terminal domain; biotin car	100.0
2w70_A	449	Biotin carboxylase; ligase, ATP-binding, fatty aci	100.0
2vpq_A	451	Acetyl-COA carboxylase; bacteria, ATP-grAsp domain	100.0
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	100.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	100.0
1w96_A	554	ACC, acetyl-coenzyme A carboxylase; ligase, obesit	100.0
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	100.0
4dim_A	403	Phosphoribosylglycinamide synthetase; structural g	99.97
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	99.97
2dwc_A	433	PH0318, 433AA long hypothetical phosphoribosylglyc	99.97
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.97
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	99.96
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	99.96
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.96
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	99.96
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	99.96
3vot_A	425	L-amino acid ligase, BL00235; ATP-grAsp motif, ATP	99.96
2pn1_A	331	Carbamoylphosphate synthase large subunit; ZP_0053	99.96
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	99.95
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	99.95
3lp8_A	442	Phosphoribosylamine-glycine ligase; ssgcid, NIH, n	99.95
2yrx_A	451	Phosphoribosylglycinamide synthetase; glycinamide	99.95
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	99.95
2ip4_A	417	PURD, phosphoribosylamine--glycine ligase; GAR syn	99.95
2yw2_A	424	Phosphoribosylamine--glycine ligase; glycinamide r	99.95
3mjf_A	431	Phosphoribosylamine--glycine ligase; structural ge	99.95
2xcl_A	422	Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-	99.94
4fu0_A	357	D-alanine--D-alanine ligase 7; vancomycin resistan	99.94
2z04_A	365	Phosphoribosylaminoimidazole carboxylase ATPase su	99.94
4eg0_A	317	D-alanine--D-alanine ligase; structural genomics,	99.94
1a9x_A	1073	Carbamoyl phosphate synthetase (large chain); amid	99.94
3vmm_A	474	Alanine-anticapsin ligase BACD; ATP-grAsp domain,	99.94
3e5n_A	386	D-alanine-D-alanine ligase A; bacterial blight; 2.	99.93
3i12_A	364	D-alanine-D-alanine ligase A; D-alanyl-alanine syn	99.93
1vkz_A	412	Phosphoribosylamine--glycine ligase; TM1250, struc	99.93
1ehi_A	377	LMDDL2, D-alanine:D-lactate ligase; ATP-binding. g	99.93
2i87_A	364	D-alanine-D-alanine ligase; APO; 2.00A {Staphyloco	99.93
3eth_A	355	Phosphoribosylaminoimidazole carboxylase ATPase su	99.92
1iow_A	306	DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen pho	99.92
3k3p_A	383	D-alanine--D-alanine ligase; D-alanyl-alanine synt	99.92
3lwb_A	373	D-alanine--D-alanine ligase; DDL, D-alanyl--D-alan	99.92
3r5x_A	307	D-alanine--D-alanine ligase; alpha-beta structure,	99.91
1e4e_A	343	Vancomycin/teicoplanin A-type resistance protein;	99.91
3tqt_A	372	D-alanine--D-alanine ligase; cell envelope; 1.88A	99.91
3se7_A	346	VANA; alpha-beta structure, D-alanine-D-lactate li	99.91
2fb9_A	322	D-alanine:D-alanine ligase; 1.90A {Thermus caldoph	99.9
2pvp_A	367	D-alanine-D-alanine ligase; 2.40A {Helicobacter py	99.88
2r85_A	334	PURP protein PF1517; ATP-grAsp superfamily, unknow	99.86
1uc8_A	280	LYSX, lysine biosynthesis enzyme; alpha-aminoadipa	99.86
2r7k_A	361	5-formaminoimidazole-4-carboxamide-1-(beta)-D- rib	99.85
2pbz_A	320	Hypothetical protein; NYSGXRC, PSI-II, IMP biosynt	99.82
2cqy_A	108	Propionyl-COA carboxylase alpha chain, mitochondri	99.78
1gsa_A	316	Glutathione synthetase; ligase; HET: ADP GSH; 2.00	99.74
3ln7_A	757	Glutathione biosynthesis bifunctional protein GSH;	99.71
1z2n_X	324	Inositol 1,3,4-trisphosphate 5/6-kinase; inositol	99.69
1wr2_A	238	Hypothetical protein PH1789; structural genomics,	99.67
3ln6_A	750	Glutathione biosynthesis bifunctional protein GSH;	99.65
3df7_A	305	Putative ATP-grAsp superfamily protein; putative p	99.6
1i7n_A	309	Synapsin II; synapse, phosphorylation, neuropeptid	99.59
2p0a_A	344	Synapsin-3, synapsin III; neurotransmitter release	99.54
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	99.54
2q7d_A	346	Inositol-tetrakisphosphate 1-kinase; inositol kina	99.5
3ufx_B	397	Succinyl-COA synthetase beta subunit; ATP-grAsp fo	99.41
2nu8_B	388	SCS-beta, succinyl-COA synthetase beta chain; citr	99.4
2fp4_B	395	Succinyl-COA ligase [GDP-forming] beta-chain, mito	99.35
3t7a_A	330	Inositol pyrophosphate kinase; ATP-grAsp fold, tra	98.99
3mwd_A	425	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	98.08
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	97.91
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.55
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.45
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.32
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.28
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.19
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.1
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.76
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.63
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.55
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.52
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.43
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.41
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.39
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.21
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.2
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.14
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.13
3n6x_A	474	Putative glutathionylspermidine synthase; domain o	96.07
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.03
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.02
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.02
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.0
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.96
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.96
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.92
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	95.86
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.86
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.86
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.84
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.83
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.82
3tig_A	380	TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Si	95.8
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.77
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.73
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.68
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.66
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.66
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.63
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.62
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	95.58
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	95.55
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.55
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.51
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	95.51
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.49
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.49
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.48
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.46
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.39
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.33
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.33
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.31
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.29
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	95.29
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.28
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.25
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.24
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.23
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.21
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	95.21
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.2
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.17
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.13
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.11
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.06
3s2u_A	365	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape	95.05
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.04
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	95.03
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.02
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.97
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.95
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.95
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	94.94
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.93
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	94.92
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.91
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	94.89
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.89
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	94.87
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.85
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.84
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.84
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	94.8
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	94.79
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.77
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.74
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	94.73
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.71
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	94.7
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	94.69
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.67
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	94.67
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.67
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	94.66
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.65
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.62
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.62
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.6
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.59
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.58
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.56
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.54
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	94.53
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	94.53
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.52
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.5
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.49
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.43
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.43
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.43
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.42
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	94.4
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.4
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	94.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.37
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	94.36
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	94.35
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.34
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	94.33
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.33
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.31
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.29
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	94.27
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	94.26
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	94.23
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	94.21
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.18
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	94.17
1spx_A	278	Short-chain reductase family member (5L265); paral	94.17
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.15
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.15
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.14
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.11
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.11
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	94.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.1
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	94.08
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.06
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.05
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.02
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.02
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	94.01
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.96
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.96
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	93.94
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	93.93
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.93
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.92
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	93.92
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.91
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.91
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	93.9
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.9
1xkq_A	280	Short-chain reductase family member (5D234); parra	93.89
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	93.89
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.87
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.86
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.85
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	93.84
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	93.83
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.83
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	93.81
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.81
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	93.78
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	93.77
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.76
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.75
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.75
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	93.74
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	93.73
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.72
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	93.67
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.67
4dqx_A	277	Probable oxidoreductase protein; structural genomi	93.65
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.65
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	93.65
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	93.64
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.61
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	93.6
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	93.59
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	93.58
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.57
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	93.57
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.56
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	93.52
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	93.52
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.51
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	93.5
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.49
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.48
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.47
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.46
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.46
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.45
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.43
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	93.43
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.43
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.41
1xhl_A	297	Short-chain dehydrogenase/reductase family member	93.39
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.37
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.36
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	93.35
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	93.35
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	93.34
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.34
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	93.33
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	93.33
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.31
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.31
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.28
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.23
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.23
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.22
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.22
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.22
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	93.19
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.18
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.18
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	93.18
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	93.17
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.17
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	93.16
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	93.15
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.15
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	93.13
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	93.12
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	93.1
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.07
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	93.06
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	93.05
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.05
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	93.04
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	93.04
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	93.02
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	93.01
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.01
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	92.99
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.99
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.96
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	92.94
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	92.92
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.91
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.9
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	92.9
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.9
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	92.89
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.88
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.86
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.83
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	92.83
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	92.81
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	92.8
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	92.8
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.79
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	92.74
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.72
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.7
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	92.66
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.65
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.64
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.6
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.59
1xq1_A	266	Putative tropinone reducatse; structural genomics,	92.58
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.58
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	92.57
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.57
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.57
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.55
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	92.55
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	92.53
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.5
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	92.44
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	92.42
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.42
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	92.41
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	92.4
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	92.4
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	92.39
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.37
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	92.36
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.35
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	92.34
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	92.31
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	92.3
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.29
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.28
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.25
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.22
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	92.17
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	92.15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.13
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	92.13
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.13
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	92.12
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	92.11
4had_A	350	Probable oxidoreductase protein; structural genomi	92.11
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	92.1
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.1
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.09
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.05
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.05
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.03
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	92.01
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	91.97
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	91.95
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	91.9
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	91.87
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	91.84
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	91.81
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.81
1f0k_A	364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	91.78
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.75
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.72
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	91.71
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	91.68
2io8_A	619	Bifunctional glutathionylspermidine synthetase/ami	91.62
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.59
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	91.57
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	91.56
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.55
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	91.53
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.51
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.51
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	91.49
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	91.48
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.46
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.45
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	91.45
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	91.42
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	91.37
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.36
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.36
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.33
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	91.31
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	91.31
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	91.29
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	91.29
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.28
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.26
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	91.24
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	91.23
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	91.21
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	91.2
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	91.2
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.19
2ywr_A	216	Phosphoribosylglycinamide formyltransferase; rossm	91.15
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	91.15
4eye_A	342	Probable oxidoreductase; structural genomics, niai	91.13
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	91.1
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.09
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.09
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.09
3pdi_B	458	Nitrogenase MOFE cofactor biosynthesis protein NI;	91.04
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	91.04
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	91.02
3cxt_A	291	Dehydrogenase with different specificities; rossma	91.0
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	90.99
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.99
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	90.99
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	90.96
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	90.93
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.85
3auf_A	229	Glycinamide ribonucleotide transformylase 1; struc	90.83
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	90.82
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.81
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	90.79
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	90.78
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.77
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.74
1lnq_A	336	MTHK channels, potassium channel related protein;	90.73
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	90.71
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	90.67
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	90.67
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.64
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	90.64
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.63
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	90.58
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	90.58
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.56
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	90.56
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	90.5
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	90.5
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	90.49
2cul_A	232	Glucose-inhibited division protein A-related PROT	90.49
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.48
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	90.44
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.41
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.3
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	90.27
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	90.22
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	90.22
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	90.19
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	90.18
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	90.18
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	90.18
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.16
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	90.14
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	90.11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.11
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	90.08
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.08
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	90.04
3u7q_A	492	Nitrogenase molybdenum-iron protein alpha chain; m	90.01
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	90.01
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	89.97
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	89.88
4e4y_A	244	Short chain dehydrogenase family protein; structur	89.86
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	89.83
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	89.82
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	89.77
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.77
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	89.77
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	89.75
3pdi_A	483	Nitrogenase MOFE cofactor biosynthesis protein NI;	89.71
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	89.7
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	89.7
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.69
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	89.68
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	89.68
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	89.67
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.66
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	89.61
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	89.61

>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*

Probab=100.00  E-value=1.1e-40  Score=319.83  Aligned_cols=244  Identities=52%  Similarity=0.894  Sum_probs=227.8

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      ..||++||||+|+|.++++++++++++|+++++++++++....+..++|+.+.++|.+..++|.+.+.++++++++++|+
T Consensus         2 n~m~~~kiLI~g~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~   81 (446)
T 3ouz_A            2 NAMEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADA   81 (446)
T ss_dssp             CTTCCCEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSE
T ss_pred             CccccceEEEECCCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCE
Confidence            35678999999999999999999999999999999888888888999999998887788888999999999999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI  226 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv  226 (313)
                      |+|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+
T Consensus        82 i~p~~g~~~e~~~~~~~~~~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~Pvvv  161 (446)
T 3ouz_A           82 IFPGYGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVIL  161 (446)
T ss_dssp             EECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEE
T ss_pred             EEECCcccccCHHHHHHHHHCCCceECcCHHHHHHhCCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999998533678999999999999999999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccce
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIH  306 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~  306 (313)
                      ||..|+||+||+++++.+|+.++++.+.......+++.++++||||+|++|++++++.|++|+++++++++|+++|++++
T Consensus       162 Kp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~d~~g~~~~~~~~~~~~~~~~~~  241 (446)
T 3ouz_A          162 KAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQK  241 (446)
T ss_dssp             EETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEE
T ss_pred             EECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCCcEEEEEEEEcCCCCEEEEeeceeeeeecCce
Confidence            99999999999999999999999999888776667778999999999988999999999999999999999999999998


Q ss_pred             eEEe
Q 021372          307 THTE  310 (313)
Q Consensus       307 ~ie~  310 (313)
                      .++.
T Consensus       242 ~~~~  245 (446)
T 3ouz_A          242 LIEE  245 (446)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*

Probab=100.00  E-value=1.3e-40  Score=326.72  Aligned_cols=242  Identities=33%  Similarity=0.558  Sum_probs=221.5

Q ss_pred             CcccccccEEEEEcCCHhHHHHHHHHHHc---------CCcEEEEecCCC--cchhhhhhcCceEEccCCCCCCCcCCHH
Q 021372           65 LKVTCRQEKILVANRGEIAVRVIRTAHEM---------GIPCVAVYSTID--KDALHVKLADESVCIGEAPSSQSYLLIP  133 (313)
Q Consensus        65 ~~~~~~~~~ILIig~g~~a~~v~~al~~~---------G~~vi~v~~~~~--~~~~~~~~ad~~~~v~~~~~~~~~~~~~  133 (313)
                      .++.+|++||||+|+|+++++++++++++         |++++++++..+  ..+.+.+++|+.+.+++.+..++|.+.+
T Consensus        50 ~~g~~~~~kvLIanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe~v~i~~~~~~~syld~~  129 (587)
T 3jrx_A           50 FGGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVE  129 (587)
T ss_dssp             TTCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHH
T ss_pred             cCCCcccCEEEEECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCEEEEeCCCCccccccCHH
Confidence            34567899999999999999999999987         799999987444  6788899999999887777778899999


Q ss_pred             HHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc---------
Q 021372          134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD---------  204 (313)
Q Consensus       134 ~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~---------  204 (313)
                      .|++++++.++|+|+|++|+++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++.         
T Consensus       130 ~Il~~a~~~~vdaV~pG~GflsEn~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~  209 (587)
T 3jrx_A          130 LIVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTE  209 (587)
T ss_dssp             HHHHHHHHTTCSEEECCSSTTTTCTHHHHHHHTTTCEESSCCHHHHHHHCSHHHHHHHHHHTTCCBCCBTTTTCCCCC--
T ss_pred             HHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCeecccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999852         


Q ss_pred             ------------------ccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcE
Q 021372          205 ------------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV  266 (313)
Q Consensus       205 ------------------~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~v  266 (313)
                                        ..+.+.+++.++++++|||+||||..|+||+||+++++.+|+.++++.+..+.    .+..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~----~~~~v  285 (587)
T 3jrx_A          210 DDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPI  285 (587)
T ss_dssp             ----CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHS----TTCCE
T ss_pred             cccccccccccchhhccccccCCHHHHHHHHHhcCCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhc----cCCCE
Confidence                              11788999999999999999999999999999999999999999999887653    34789


Q ss_pred             EEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          267 YLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       267 lvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      +||+||+|++|++|+++.|++|+++++++|+|++||++++.+++
T Consensus       286 lVEeyI~g~rei~V~vl~D~~G~vv~l~~rd~siqrr~qk~ie~  329 (587)
T 3jrx_A          286 FLMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEE  329 (587)
T ss_dssp             EEEECCCSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEEEEE
T ss_pred             EEEEecCCCcEEEEEEEEcCCCCEEEEeeeeccccccccceeEe
Confidence            99999999999999999999999999999999999999999886

>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A

Probab=100.00  E-value=1.8e-40  Score=324.12  Aligned_cols=241  Identities=33%  Similarity=0.558  Sum_probs=210.7

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHc---------CCcEEEEecCCC--cchhhhhhcCceEEccCCCCCCCcCCHHH
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEM---------GIPCVAVYSTID--KDALHVKLADESVCIGEAPSSQSYLLIPN  134 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~---------G~~vi~v~~~~~--~~~~~~~~ad~~~~v~~~~~~~~~~~~~~  134 (313)
                      +.++|++||||+|+|+++++++++++++         |++++++++..+  ..+.+.+++|+.+.+++.+..++|.+.+.
T Consensus        35 ~~~~~~~kvLianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe~~~i~~~~~~~sy~d~~~  114 (540)
T 3glk_A           35 GGDRVIEKVLIANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADHYVPVPGGPNNNNYANVEL  114 (540)
T ss_dssp             TCSCCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHH
T ss_pred             CCcccccEEEEECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCEEEEeCCCCcccccccHHH
Confidence            4467899999999999999999999987         789999987444  67888899999998877777788999999


Q ss_pred             HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc----------
Q 021372          135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD----------  204 (313)
Q Consensus       135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~----------  204 (313)
                      +++++++.++|+|+|++|+++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++.          
T Consensus       115 ii~~a~~~~~daI~pg~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~  194 (540)
T 3glk_A          115 IVDIAKRIPVQAVWAGWGHASENPKLPELLCKNGVAFLGPPSEAMWALGDKIASTVVAQTLQVPTLPWSGSGLTVEWTED  194 (540)
T ss_dssp             HHHHHHHTTCSEEECCSSGGGGCTHHHHHHHHTTCEESSCCHHHHC---CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCT
T ss_pred             HHHHHHHhCCCEEEeCCCccccCHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHcCCCCCCccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999852          


Q ss_pred             -----------------ccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEE
Q 021372          205 -----------------GLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVY  267 (313)
Q Consensus       205 -----------------~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vl  267 (313)
                                       ..+.+.+++.++++++|||+||||..|+||+||+++++.+|+.++++.+..+.    .+..++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~----~~~~vl  270 (540)
T 3glk_A          195 DLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEI----PGSPIF  270 (540)
T ss_dssp             TC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHS----TTCCEE
T ss_pred             ccccccccccccccccccCcCCHHHHHHHHHhcCCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhc----cCCCEE
Confidence                             01788999999999999999999999999999999999999999999887653    347899


Q ss_pred             EeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          268 LEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       268 vEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      +||||+|++|++|+++.|++|+++++++|+|+++|++++.+++
T Consensus       271 VEe~I~g~rei~V~vl~d~~G~vv~l~~rd~s~qr~~~k~ie~  313 (540)
T 3glk_A          271 LMKLAQHARHLEVQILADQYGNAVSLFGRDCSIQRRHQKIVEE  313 (540)
T ss_dssp             EEECCSSEEEEEEEEEECTTSCEEEEEEEEEEEC---CCSEEE
T ss_pred             EEEecCCCcEEEEEEEEcCCCCEEEEeceeeeeeecccceEEe
Confidence            9999999899999999999999999999999999999998876

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=100.00  E-value=6.1e-41  Score=335.57  Aligned_cols=241  Identities=51%  Similarity=0.849  Sum_probs=164.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|+++++++++++++|+++++++++.+..+.+.+++|+.+.+++.+..++|.+.+.|+++++++++|+|+|
T Consensus         1 m~~kiLIanrGeia~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~p   80 (681)
T 3n6r_A            1 MFNKILIANRGEIACRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHP   80 (681)
T ss_dssp             -CCCBCBSCCHHHHHHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEE
Confidence            68999999999999999999999999999999999999999999999998887777888999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++|+++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|+||.
T Consensus        81 g~gflsE~~~~a~~le~~Gi~~iGp~~~ai~~~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igyPvVvKp~  160 (681)
T 3n6r_A           81 GYGFLSENSKFAEALEAEGVIFVGPPKGAIEAMGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGYPVMIKAS  160 (681)
T ss_dssp             CSSSSTTCHHHHHHHHTTTCCCSSSCHHHHHHTTSHHHHHHHHHTTTCCCCCC---------------------------
T ss_pred             CCCccccCHHHHHHHHHcCCceECCCHHHHHHhCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCCcEEEEEC
Confidence            99999999999999999999999999999999999999999999999999998645788899999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|+||+||+++++.+|+.++++.+..+....|+++.+++||||+|++|++++++.|++|+++++++|+|+++|++++.++
T Consensus       161 ~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~rei~V~v~~d~~G~vv~l~~rd~s~qr~~~k~~e  240 (681)
T 3n6r_A          161 AGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDSHGNGIYLGERECSIQRRNQKVVE  240 (681)
T ss_dssp             ------------------------------------------CCSCEEEEEEEECCSSSCCEEEEEEECCCEETTEECEE
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCCcEEEEEEEEeCCCCEEEEeeeecceeccCccEEE
Confidence            99999999999999999999999887766667778999999999988999999999999999999999999999999887


Q ss_pred             e
Q 021372          310 E  310 (313)
Q Consensus       310 ~  310 (313)
                      +
T Consensus       241 ~  241 (681)
T 3n6r_A          241 E  241 (681)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}

Probab=100.00  E-value=6e-37  Score=295.05  Aligned_cols=243  Identities=48%  Similarity=0.811  Sum_probs=215.4

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      ..+|+++|||+|+|.+++.++++++++|+++++++++++..+.+..++|+.+.+++. ...++|.+.+.++++++++++|
T Consensus         2 ~~~~~k~ILI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id   81 (461)
T 2dzd_A            2 ETRRIRKVLVANRGEIAIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVD   81 (461)
T ss_dssp             -CCCCSEEEECSCHHHHHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCC
T ss_pred             CCCcCcEEEEECCcHHHHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCC
Confidence            455789999999999999999999999999999988877767778899998877532 2234567899999999999999


Q ss_pred             EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEE
Q 021372          146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVM  225 (313)
Q Consensus       146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~V  225 (313)
                      +|+|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.+++++++||+|
T Consensus        82 ~v~~~~g~~~E~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~Pvv  161 (461)
T 2dzd_A           82 AIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGYPII  161 (461)
T ss_dssp             EEECCSSSSTTCHHHHHHHHHTTCEESSCCHHHHHHTTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCSCEE
T ss_pred             EEEECCCccccCHHHHHHHHHcCCEEECCCHHHHHHhhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCCcEE
Confidence            99999988888888889999999999999999999999999999999999999999842257899999999999999999


Q ss_pred             EeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccc
Q 021372          226 IKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEI  305 (313)
Q Consensus       226 vKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~  305 (313)
                      +||..|+||+||+++++.+|+.++++.+.......+++..+++||||+|++|++++++.|.+|+++.+.++.|+++|+++
T Consensus       162 vKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~  241 (461)
T 2dzd_A          162 IKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQRRHQ  241 (461)
T ss_dssp             EEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSCEEEEEEEEECTTCCEEEEEEEEEEEEETTE
T ss_pred             EEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCCeEEEEEEEEcCCCCEEEEEecccccccccc
Confidence            99999999999999999999999999887665555666899999999998899999999988999999999999999888


Q ss_pred             eeEE
Q 021372          306 HTHT  309 (313)
Q Consensus       306 ~~ie  309 (313)
                      +.++
T Consensus       242 ~~~~  245 (461)
T 2dzd_A          242 KVVE  245 (461)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            7654

>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=100.00  E-value=1e-36  Score=292.67  Aligned_cols=239  Identities=55%  Similarity=0.929  Sum_probs=214.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||+|+|.+++.++++++++|+++++++++++....+..++|+.+.++|. ...++.+.+.++++++++++|+|+|
T Consensus         1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~-~~~~~~d~~~l~~~~~~~~~d~v~~   79 (451)
T 1ulz_A            1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTD-PLDTYLNKQRIINLALEVGADAIHP   79 (451)
T ss_dssp             CCSSEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSS-TTHHHHCHHHHHHHHHHTTCCEEEC
T ss_pred             CCceEEEECCcHHHHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCC-cccccCCHHHHHHHHHHcCCCEEEE
Confidence            578999999999999999999999999999987777667778899998877543 4556788899999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      ++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.+++++++||+||||.
T Consensus        80 ~~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~  159 (451)
T 1ulz_A           80 GYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKAT  159 (451)
T ss_dssp             CSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEEC
T ss_pred             CCCccccCHHHHHHHHHCCCeEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCCCEEEEEC
Confidence            99888888888889999999999999999999999999999999999999998412578999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      .|++|+||+++++.+|+.++++.+.......+++..+++||||+|++|+++.++.+.+|++++++++.|++++++++.++
T Consensus       160 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~  239 (451)
T 1ulz_A          160 AGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQKLVE  239 (451)
T ss_dssp             SSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCCeEEEEEEEEcCCCCEEEEeeeeccccccccccee
Confidence            99999999999999999999998877655556668999999999978999999999889999999999999988877654

>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...

Probab=100.00  E-value=1.1e-36  Score=292.35  Aligned_cols=240  Identities=52%  Similarity=0.870  Sum_probs=213.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |+++|||+|+|.+++.++++++++|+++++++++++....+..++|+.+.++|.....++.+.+.++++++++++|+|+|
T Consensus         1 m~k~ilI~g~g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~   80 (449)
T 2w70_A            1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP   80 (449)
T ss_dssp             CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEEC
T ss_pred             CCceEEEeCCcHHHHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEE
Confidence            57899999999999999999999999999998777666677889999887655555667888999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH-HHHHHHhCCcEEEee
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA-VKLADELGFPVMIKA  228 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~-~~~~~~lg~P~VvKP  228 (313)
                      ++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++ .+++++++||+|+||
T Consensus        81 ~~g~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~PvvvKp  160 (449)
T 2w70_A           81 GYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA  160 (449)
T ss_dssp             CSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCcccCHHHHHHHHHcCCceECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCCcEEEEE
Confidence            9988888888888999999999999999999999999999999999999999832257788888 888899999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH  308 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~i  308 (313)
                      ..|+||+||+++++.+|+.++++.+.......+++..+++||||+|++|++++++.+.+|+++++++|+|++++.+++..
T Consensus       161 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~~~~~~~G~~~~~~~~~~~~~~~~~~~~  240 (449)
T 2w70_A          161 SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVV  240 (449)
T ss_dssp             TTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEE
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCCeEEEEEEEEcCCCCEEEEeceecccccCCccee
Confidence            99999999999999999999999887654444556799999999997899999999988999999999999988887654


Q ss_pred             E
Q 021372          309 T  309 (313)
Q Consensus       309 e  309 (313)
                      +
T Consensus       241 ~  241 (449)
T 2w70_A          241 E  241 (449)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}

Probab=100.00  E-value=1.7e-36  Score=291.09  Aligned_cols=239  Identities=53%  Similarity=0.923  Sum_probs=214.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++||||+|+|.+++.++++++++|+++++++++++....+..++|+.+.+++.....+|.+.+.++++++++++|+|+|+
T Consensus         1 ~k~ilI~g~g~~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~   80 (451)
T 2vpq_A            1 MKKVLIANRGEIAVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPG   80 (451)
T ss_dssp             -CEEEECCCHHHHHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECC
T ss_pred             CceEEEeCCCHHHHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEEC
Confidence            47899999999999999999999999999988777667778899999877665556678889999999999999999999


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      +++.+|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.+++++++||+||||..
T Consensus        81 ~g~~~e~~~~~~~~~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~PvvvKp~~  160 (451)
T 2vpq_A           81 YGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGYPVIIKATA  160 (451)
T ss_dssp             SSTTTTCHHHHHHHHTTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCSSEEEEETT
T ss_pred             CCccccCHHHHHHHHHcCCeEECCCHHHHHHhcCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCCcEEEEECC
Confidence            98888888888999999999999999999999999999999999999999973226789999999999999999999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      |++|+||+++++.+|+.++++.+.......+++..+++||||+|++|+++.++.+.+|+++.++++.|++++++++.++
T Consensus       161 g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~~e~~v~v~~~~~G~~~~~~~~~~~~~~~~~~~~~  239 (451)
T 2vpq_A          161 GGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVE  239 (451)
T ss_dssp             CCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSEEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEE
T ss_pred             CCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCeEEEEEEEEcCCCCEEEEeccccchhccccceEE
Confidence            9999999999999999999998876544445568999999999977999999999889999999999999998887654

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=100.00  E-value=5.6e-38  Score=329.09  Aligned_cols=242  Identities=43%  Similarity=0.749  Sum_probs=162.9

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ++|++||||+|+|.++++++++++++|+++++++++++..+.+..++|+.+.+++.+..++|.+.+.++++++++++|+|
T Consensus        28 ~~m~kkILI~grGeia~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI  107 (1236)
T 3va7_A           28 KKPFETVLIANRGEIAVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAI  107 (1236)
T ss_dssp             CCSCSEEEECCCHHHHHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEE
T ss_pred             cCCCCEEEEEcCCHHHHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEE
Confidence            44789999999999999999999999999999999988889999999999988877778889999999999999999999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      +|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++ ..+.+.+++.++++++|||+|||
T Consensus       108 ~pg~g~lsEn~~~a~~le~~Gi~~iGps~eai~~~~DK~~ak~ll~~aGIPvpp~~-~~v~s~eea~~~a~~iGyPvVVK  186 (1236)
T 3va7_A          108 IPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGS-GLIKDAKEAKEVAKKLEYPVMVK  186 (1236)
T ss_dssp             ECCSSGGGGCHHHHHHHHTTTCEESSCCHHHHHHHHSTTHHHHHHHHTTCCCCC--------------------------
T ss_pred             EECCccccccHHHHHHHHHCCCCeeCCCHHHHHHhcCHHHHHHHHHHcCCCCCCee-EecCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999964 57889999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhccccee
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHT  307 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~  307 (313)
                      |..|+||+||+++++.+|+.++++.+.......+++..++|||||+|++|++|+++.|++|+++++++++|+++|++++.
T Consensus       187 P~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G~rEisV~vl~Dg~g~vv~l~~rd~s~qr~~~k~  266 (1236)
T 3va7_A          187 STAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKV  266 (1236)
T ss_dssp             ----------------------------------------------CCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEE
T ss_pred             eCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCCCeEEEEEEEecCCceEEEEeeeeeeeeecCcce
Confidence            99999999999999999999999988766555566788999999999899999999999999999999999999999998


Q ss_pred             EEe
Q 021372          308 HTE  310 (313)
Q Consensus       308 ie~  310 (313)
                      +++
T Consensus       267 ~e~  269 (1236)
T 3va7_A          267 IEE  269 (1236)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=100.00  E-value=1.8e-37  Score=324.49  Aligned_cols=242  Identities=48%  Similarity=0.810  Sum_probs=210.3

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-CCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-PSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +|++||||+|+|.++++++++++++|+++++++++++....+..++|+.+.+++. ...++|.+.+.++++++++++|+|
T Consensus         2 ~~~kkVLIagrGeia~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI   81 (1150)
T 3hbl_A            2 KQIKKLLVANRGEIAIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAI   81 (1150)
T ss_dssp             -CCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEE
Confidence            3579999999999999999999999999999999998889999999999988643 334678899999999999999999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      +|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++|||+|||
T Consensus        82 ~pg~gflsE~~~~a~~le~~Gi~~iGp~~eai~~~~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGyPvVVK  161 (1150)
T 3hbl_A           82 HPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIK  161 (1150)
T ss_dssp             ECTTTTSTTCHHHHHHHHHTTCEESSSCHHHHHHHHSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCSSEEEE
T ss_pred             EECCCcccccHHHHHHHHHCCCCeeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999985336788888888999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhccccee
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHT  307 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~  307 (313)
                      |..|+||+|++++++.+|+.++++.+..+....|++..+++|+||+|++|++|++++|++|+++++++|+|+++|++++.
T Consensus       162 P~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~reieV~vl~d~~G~vv~l~er~~s~qr~~~k~  241 (1150)
T 3hbl_A          162 ATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKV  241 (1150)
T ss_dssp             CCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSCEEEEEEEEECSSSCEEEEEEEEEEEESSSCEE
T ss_pred             eCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCCcEEEEEEEEeCCCCEEEEEeeccceeccCcee
Confidence            99999999999999999999999876544333455678999999999889999999999999999999999999999998


Q ss_pred             EEe
Q 021372          308 HTE  310 (313)
Q Consensus       308 ie~  310 (313)
                      +++
T Consensus       242 ~e~  244 (1150)
T 3hbl_A          242 VEV  244 (1150)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            765

>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A

Probab=100.00  E-value=1.8e-35  Score=290.89  Aligned_cols=240  Identities=30%  Similarity=0.517  Sum_probs=209.0

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCc---------EEEEec--CCCcchhhhhhcCceEEccCCCCCCCcCCHHHH
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIP---------CVAVYS--TIDKDALHVKLADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~---------vi~v~~--~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      +++|+++|||+|+|.+++.++++++++|++         ++++.+  +.+..+.+.+++|+.+.+++....++|.+.+.|
T Consensus        43 ~~~~~kkILI~g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~~~~~~aD~~~~ip~~~~~~~y~d~~~l  122 (554)
T 1w96_A           43 GHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDLI  122 (554)
T ss_dssp             CCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHHH
T ss_pred             CcccccEEEEECCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCChhhhhCCEEEEcCCCCccccccCHHHH
Confidence            345789999999999999999999999654         455554  223456678899999988655555678899999


Q ss_pred             HHHHHhcCCCEEeeccCcCcccHHHHHHHHHcC--CceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc--------
Q 021372          136 LSAAISRGCTMLHPGYGFLAENAVFVEMCREHG--INFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG--------  205 (313)
Q Consensus       136 ~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~g--i~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~--------  205 (313)
                      +++++++++|+|+|++|+++|+..+...+++.|  ++++||+.+++..+.||..++++|+++|||+|++...        
T Consensus       123 ~~~a~~~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~  202 (554)
T 1w96_A          123 VDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSLGDKISSTIVAQSAKVPCIPWSGTGVDTVHVD  202 (554)
T ss_dssp             HHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHSCSHHHHHHHHHHTTCCBCCBTTTTCCCCEEC
T ss_pred             HHHHHHhCCCEEEECCCccccCHHHHHHHHHcCCeEEEeCCCHHHHHHHhCHHHHHHHHHHCCCCcCCcccccccccccc
Confidence            999999999999999999889877888899999  9999999999999999999999999999999998511        


Q ss_pred             ----------------cCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEe
Q 021372          206 ----------------LLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLE  269 (313)
Q Consensus       206 ----------------~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvE  269 (313)
                                      .+.+.+++.++++++|||+||||..|+||+||+++++.+|+.++++.+....    ...+++||
T Consensus       203 ~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~----~~~~vlvE  278 (554)
T 1w96_A          203 EKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEI----PGSPIFIM  278 (554)
T ss_dssp             TTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHS----TTCCEEEE
T ss_pred             ccccccccccccccccCCCCHHHHHHHHHHcCCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhc----cCCCEEEE
Confidence                            1378899988899999999999999999999999999999999999886542    24789999


Q ss_pred             eccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          270 KYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       270 e~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      |||+|++|++|.++.|++|+++.+++++|+++|++++.++.
T Consensus       279 e~i~g~~e~sv~vl~d~~G~vv~l~~~~~~~~~~~~k~~~~  319 (554)
T 1w96_A          279 KLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEE  319 (554)
T ss_dssp             ECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             EecCCCcEEEEEEEEcCCCCEEEEeeeeeeeEeeccceeee
Confidence            99998789999999998899999999999999999988753

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=100.00  E-value=1.1e-35  Score=311.50  Aligned_cols=241  Identities=47%  Similarity=0.758  Sum_probs=158.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCC-------CCCCCcCCHHHHHHHHHhc
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEA-------PSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~-------~~~~~~~~~~~l~~~~~~~  142 (313)
                      |.+||||.|+|+++++++++++++|+++++++++++..+.+..++|+.+.+++.       ...++|.+.+.|+++++++
T Consensus        13 ~~~~~lianrGeia~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~   92 (1165)
T 2qf7_A           13 PISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLS   92 (1165)
T ss_dssp             CCCEEEECCCHHHHHHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHH
T ss_pred             cceEEEEcCCcHHHHHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHh
Confidence            589999999999999999999999999999999888777888999999988643       2345677899999999999


Q ss_pred             CCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC
Q 021372          143 GCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF  222 (313)
Q Consensus       143 ~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~  222 (313)
                      ++|+|+|++++++|+..+++.+++.|++++||+++++..+.||..++++|+++|||+|+++...+.+.+++.++++++||
T Consensus        93 ~iD~V~pg~g~lsE~~~~a~~le~~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igy  172 (1165)
T 2qf7_A           93 GADAIHPGYGLLSESPEFVDACNKAGIIFIGPKADTMRQLGNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY  172 (1165)
T ss_dssp             TCSEEECCSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHHHSHHHHHHHHHHTTCCBC----------------------
T ss_pred             CCCEEEECCCchhcCHHHHHHHHHcCCceECCCHHHHHHHCCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCC
Confidence            99999999999999988999999999999999999999999999999999999999999842257788899889999999


Q ss_pred             cEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhc
Q 021372          223 PVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV  302 (313)
Q Consensus       223 P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r  302 (313)
                      |+||||..|+||+||+++++.+|+.++++.+..+....|++..+++||||+|++|++|+++.|++|+++++++|+|+++|
T Consensus       173 PvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg~EisV~vl~D~~G~vv~l~~r~~s~~r  252 (1165)
T 2qf7_A          173 PVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSVQR  252 (1165)
T ss_dssp             -----------------------------------------------CCCSSEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCCcEEEEEEEEcCCCcEEEEEeeccccee
Confidence            99999999999999999999999999999887665555666889999999976999999999999999999999999999


Q ss_pred             ccceeEEe
Q 021372          303 IEIHTHTE  310 (313)
Q Consensus       303 ~~~~~ie~  310 (313)
                      ++++.++.
T Consensus       253 ~~~~~~e~  260 (1165)
T 2qf7_A          253 RNQKVVER  260 (1165)
T ss_dssp             TTEEEEEE
T ss_pred             cccceEEe
Confidence            99987664

>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}

Probab=99.97  E-value=6.2e-31  Score=248.64  Aligned_cols=206  Identities=18%  Similarity=0.261  Sum_probs=175.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +++||||+|+|..++.++++++++|+++++++. ++....+..++|+.+.++       +.+.+.++++++++++|+|+|
T Consensus         6 ~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~-~~~~~~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~~d~v~~   77 (403)
T 4dim_A            6 DNKRLLILGAGRGQLGLYKAAKELGIHTIAGTM-PNAHKPCLNLADEISYMD-------ISNPDEVEQKVKDLNLDGAAT   77 (403)
T ss_dssp             CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEEC-SSCCHHHHHHCSEEEECC-------TTCHHHHHHHTTTSCCSEEEC
T ss_pred             CCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcC-CCCCCcchhhCCeEEEec-------CCCHHHHHHHHHHcCCCEEEe
Confidence            368999999999999999999999999999964 444556788999988664       567899999999999999998


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      + ++..+...+++.+++.|+  +|++++++..+.||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||.
T Consensus        78 ~-~~~~~~~~~a~~~~~~gl--~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~  152 (403)
T 4dim_A           78 C-CLDTGIVSLARICDKENL--VGLNEEAAIMCGDKYKMKEAFKKYNVNTARHF--VVRNENELKNALENLKLPVIVKAT  152 (403)
T ss_dssp             C-SCSTTHHHHHHHHHHHTC--SSCCHHHHHHHHCHHHHHHHHHHHTCCCCCEE--CCCSHHHHHHHHHTSCSSEEEECS
T ss_pred             C-CcchhHHHHHHHHHHcCc--CCCCHHHHHHHhCHHHHHHHHHHcCCCCCCEE--EeCCHHHHHHHHhcCCCCEEEEEC
Confidence            6 455566677788888898  47999999999999999999999999999995  889999999999999999999999


Q ss_pred             cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          230 AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       230 ~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      .|+||+||+++++.+|+.++++.+....    .+..+++||||+| .|+++.++.. +|++..++
T Consensus       153 ~g~gg~Gv~~v~~~~el~~~~~~~~~~~----~~~~~lvEe~i~g-~e~sv~~~~~-~g~~~~~~  211 (403)
T 4dim_A          153 DLQGSKGIYIAKKEEEAIDGFNETMNLT----KRDYCIVEEFIEG-YEFGAQAFVY-KNDVLFVM  211 (403)
T ss_dssp             CC-----CEEESSHHHHHHHHHHHHHHC----SSSCCEEEECCCS-EEEEEEEEEE-TTEEEEEE
T ss_pred             CCCCCCCEEEECCHHHHHHHHHHHHhcC----cCCcEEEEEccCC-cEEEEEEEEE-CCEEEEEE
Confidence            9999999999999999999999887652    3478999999999 9999999986 56776654

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=99.97  E-value=3.6e-29  Score=235.55  Aligned_cols=204  Identities=16%  Similarity=0.245  Sum_probs=171.9

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++++|||+|+|.+++.++++++++|++|++++.+++.  ....++|+.+.++       +.+.+.++++++++++|+|+
T Consensus         9 ~~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~--~~~~~~d~~~~~~-------~~d~~~l~~~~~~~~~d~v~   79 (391)
T 1kjq_A            9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA--PAMHVAHRSHVIN-------MLDGDALRRVVELEKPHYIV   79 (391)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC--GGGGGSSEEEECC-------TTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCC--chhhhccceEECC-------CCCHHHHHHHHHHcCCCEEE
Confidence            34689999999999999999999999999999876654  4467788877553       56788999999999999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      ++++...  ...++.+++.|+ .++|+++++..+.||..++++| +++|||+|+++  .+.+.+++.+++++++||+|+|
T Consensus        80 ~~~e~~~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~~~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvK  154 (391)
T 1kjq_A           80 PEIEAIA--TDMLIQLEEEGL-NVVPCARATKLTMNREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVK  154 (391)
T ss_dssp             ECSSCSC--HHHHHHHHHTTC-EESSCHHHHHHHHSHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEEE
T ss_pred             ECCCcCC--HHHHHHHHhCCC-CcCCCHHHHHHhhCHHHHHHHHHHhCCCCCCCee--eeCCHHHHHHHHHhcCCCEEEE
Confidence            9876443  345677888999 4689999999999999999999 89999999985  8899999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCC
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG  288 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G  288 (313)
                      |..|++|+||+++++.+|+.++++.+......  .+..+++||||+++.|+++.++.+.+|
T Consensus       155 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~g  213 (391)
T 1kjq_A          155 PVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRA--GAGRVIVEGVVKFDFEITLLTVSAVDG  213 (391)
T ss_dssp             ESCC---CCCEEECSGGGHHHHHHHHHHHSGG--GCCCEEEEECCCCSEEEEEEEEEETTE
T ss_pred             eCCCCCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEEecCCCeEEEEEEEEeCCC
Confidence            99999999999999999999999887654211  246899999999449999999998665

>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*

Probab=99.97  E-value=6.2e-29  Score=237.27  Aligned_cols=205  Identities=20%  Similarity=0.285  Sum_probs=166.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++++|||+|+|.+++.++++++++|++|++++.+++.  ....++|+.+.++       +.+.+.++++++++++|+|++
T Consensus        18 ~~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~--~~~~~ad~~~~~~-------~~d~~~l~~~~~~~~~d~V~~   88 (433)
T 2dwc_A           18 SAQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANA--PAMQVAHRSYVGN-------MMDKDFLWSVVEREKPDAIIP   88 (433)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTC--HHHHHSSEEEESC-------TTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC--hhhhhcceEEECC-------CCCHHHHHHHHHHcCCCEEEE
Confidence            4679999999999999999999999999999877654  4467788877553       567889999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      +++...  ...++.+++.|+ .+||+++++..+.||..++++| +++|||+|+++  .+.+.+++.+++++++||+|+||
T Consensus        89 ~~e~~~--~~~~~~l~~~gi-~~~~~~~~~~~~~dK~~~k~~l~~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp  163 (433)
T 2dwc_A           89 EIEAIN--LDALFEFEKDGY-FVVPNARATWIAMHRERLRETLVKEAKVPTSRYM--YATTLDELYEACEKIGYPCHTKA  163 (433)
T ss_dssp             CSSCSC--HHHHHHHHHTTC-CBSSCHHHHHHHHCHHHHHHHHHHTSCCCCCCEE--EESSHHHHHHHHHHHCSSEEEEE
T ss_pred             CcccCC--HHHHHHHHhcCC-eeCCCHHHHHHhhCHHHHHHHHHHhcCCCCCCee--EeCCHHHHHHHHHhcCCCEEEEE
Confidence            886443  355677888999 5689999999999999999999 89999999985  88899999999999999999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC--CCCE
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK--YGNV  290 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~--~G~v  290 (313)
                      ..|++|+||+++++.+|+.++++.+......  .+..+++||||+++.|+++.++.+.  +|++
T Consensus       164 ~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~--~~~~~lvEe~i~~g~E~sv~~~~~~~~~G~~  225 (433)
T 2dwc_A          164 IMSSSGKGSYFVKGPEDIPKAWEEAKTKARG--SAEKIIVEEHIDFDVEVTELAVRHFDENGEI  225 (433)
T ss_dssp             CCC------EEECSGGGHHHHHHC-----------CCEEEEECCCCSEEEEECCEEEECTTSCE
T ss_pred             CCCcCCCCeEEECCHHHHHHHHHHHHhhccc--CCCCEEEEccCCCCeeEEEEEEecccCCCCE
Confidence            9999999999999999999999877543210  2368999999994399999999975  6774

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=99.97  E-value=5e-29  Score=237.03  Aligned_cols=201  Identities=16%  Similarity=0.216  Sum_probs=172.4

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++.++|||+|+|.+++.++++++++|++|++++.+++  .+...++|+.+..       ++.+.+.+.+++  .++|+|
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~--~p~~~~ad~~~~~-------~~~d~~~l~~~a--~~~D~V  100 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA--SPAGAVADRHLRA-------AYDDEAALAELA--GLCEAV  100 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT--CHHHHHSSEEECC-------CTTCHHHHHHHH--HHCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc--CchhhhCCEEEEC-------CcCCHHHHHHHH--hcCCEE
Confidence            34578999999999999999999999999999965444  5567889987743       367889999999  469999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHH----hCCc
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADE----LGFP  223 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~----lg~P  223 (313)
                      ++.+  ......+++.+++.  .++||+++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++    + ||
T Consensus       101 ~~~~--e~~~~~~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~v~~~~e~~~~~~~~~~~~-~P  173 (419)
T 4e4t_A          101 STEF--ENVPAASLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEASGVPVAPHV--VIESAAALAALDDAALDAV-LP  173 (419)
T ss_dssp             EECC--TTCCHHHHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHTTCCBCCEE--EECSHHHHHTSCHHHHHTT-CS
T ss_pred             EEcc--CcCCHHHHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHcCcCCCCeE--EECCHHHHHHHHHhhcccc-CC
Confidence            9654  33445677777776  4788999999999999999999999999999995  88999999888888    9 99


Q ss_pred             EEEeec-cCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          224 VMIKAT-AGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       224 ~VvKP~-~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      +|+||. .|++|+|++++++.+|+.++++.+        ++.++|+||||+|++|+++.+++|.+|++++++
T Consensus       174 ~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~Eisv~v~~~~~G~~~~~~  237 (419)
T 4e4t_A          174 GILKTARLGYDGKGQVRVSTAREARDAHAAL--------GGVPCVLEKRLPLKYEVSALIARGADGRSAAFP  237 (419)
T ss_dssp             EEEEESSSCCTTTTEEEECSHHHHHHHHHHT--------TTCCEEEEECCCEEEEEEEEEEECTTSCEEECC
T ss_pred             EEEEecCCCCCCCceEEECCHHHHHHHHHhc--------CCCcEEEeecCCCCeEEEEEEEEcCCCCEEEEe
Confidence            999999 889999999999999999988764        347899999999769999999999999988774

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=99.96  E-value=1.8e-28  Score=232.17  Aligned_cols=206  Identities=19%  Similarity=0.268  Sum_probs=171.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +++|+|+|+|.+++.++++++++|++|++++ +++  .+...++|  ..+..       ++.+.+.+.+++++  +|+|.
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~--~p~~~~ad~~~~~~~-------~~~d~~~l~~~a~~--~d~i~   91 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN--SPAKQISAHDGHVTG-------SFKEREAVRQLAKT--CDVVT   91 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT--CTTGGGCCSSCCEES-------CTTCHHHHHHHHTT--CSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC--CcHHHhccccceeec-------CCCCHHHHHHHHHh--CCEEE
Confidence            6899999999999999999999999999997 554  34466777  33322       36788999999865  78888


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC--CHHHHHHHHHHhCCcEEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ--STEEAVKLADELGFPVMI  226 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~--~~~~~~~~~~~lg~P~Vv  226 (313)
                      +.+.  .-.....+.+++ |++ ++|+++++..+.||..++++|+++|||+|+++  .+.  +.+++.++++++|||+|+
T Consensus        92 ~e~e--~~~~~~l~~l~~-g~~-v~p~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~~~g~P~Vv  165 (403)
T 3k5i_A           92 AEIE--HVDTYALEEVAS-EVK-IEPSWQAIRTIQNKFNQKEHLRKYGIPMAEHR--ELVENTPAELAKVGEQLGYPLML  165 (403)
T ss_dssp             ESSS--CSCHHHHHHHTT-TSE-ESSCHHHHHHHTSHHHHHHHHHTTTCCBCCEE--EESSCCHHHHHHHHHHHCSSEEE
T ss_pred             ECCC--CCCHHHHHHHHc-CCc-cCcCHHHHHHhcCHHHHHHHHHHCCcCCCCEE--EEcCCCHHHHHHHHHHhCCCEEE
Confidence            6542  223566777877 998 78999999999999999999999999999995  777  999999999999999999


Q ss_pred             eeccCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhccc
Q 021372          227 KATAGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIE  304 (313)
Q Consensus       227 KP~~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~  304 (313)
                      ||..|+ +|+|++++++.+|+.++++.+        .+.++|+||||+|++|+++.+++|.+|  +.+....+.+++..
T Consensus       166 Kp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~~~E~sv~v~~~~~g--~~~~p~~~~~~~~g  234 (403)
T 3k5i_A          166 KSKTMAYDGRGNFRVNSQDDIPEALEAL--------KDRPLYAEKWAYFKMELAVIVVKTKDE--VLSYPTVETVQEDS  234 (403)
T ss_dssp             EESSSCCTTTTEEEECSTTSHHHHHHHT--------TTSCEEEEECCCEEEEEEEEEEECSSC--EEECCCEEEEEETT
T ss_pred             EeCCCCcCCCCEEEECCHHHHHHHHHhc--------CCCcEEEecCCCCCeEEEEEEEEcCCC--EEEeCCeeeEEeCC
Confidence            999987 999999999999999988764        247899999999659999999999887  44444445555543

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=99.96  E-value=1.1e-28  Score=258.58  Aligned_cols=216  Identities=23%  Similarity=0.333  Sum_probs=186.3

Q ss_pred             ccccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHH
Q 021372           69 CRQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        69 ~~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      .+++||||+|+|++           |.+++++|+++|++|++++++++....+..++|+.+ +.|       .+.+.+.+
T Consensus         5 ~~~~kIlIig~G~i~ig~a~E~d~sg~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~-i~p-------~~~e~i~~   76 (1073)
T 1a9x_A            5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATY-IEP-------IHWEVVRK   76 (1073)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEE-CSC-------CCHHHHHH
T ss_pred             CCCCEEEEECCCcccccccccccchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEE-ECC-------CCHHHHHH
Confidence            34789999999985           789999999999999999988887777788899877 532       46889999


Q ss_pred             HHHhcCCCEEeeccCc-CcccH--HHHH--HHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH
Q 021372          138 AAISRGCTMLHPGYGF-LAENA--VFVE--MCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE  212 (313)
Q Consensus       138 ~~~~~~id~vip~~g~-~~e~~--~~~~--~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~  212 (313)
                      +++++++|+|+|+++. ...+.  .+.+  .+++.|++++|++++++..+.||..++++|+++|||+|+++  .+.+.++
T Consensus        77 i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~gv~~~G~~~~ai~~~~DK~~~k~~l~~~Gipvp~~~--~v~~~~e  154 (1073)
T 1a9x_A           77 IIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSG--IAHTMEE  154 (1073)
T ss_dssp             HHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHHHSHHHHHHHHHHTTCCCCSEE--EESSHHH
T ss_pred             HHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHcCCeeeCCCHHHHHHhhCHHHHHHHHHHCCcCCCCEE--EECCHHH
Confidence            9999999999998752 11221  2222  67889999999999999999999999999999999999995  8899999


Q ss_pred             HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       213 ~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      +.++++++|||+||||..|.||+|+.+++|.+|+.++++.+...+    ...++|+||||+|++|+++++++|.+|+++.
T Consensus       155 a~~~~~~ig~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~----~~~~vlvEe~I~G~~E~~v~v~~d~~g~~v~  230 (1073)
T 1a9x_A          155 ALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLS----PTKELLIDESLIGWKEYEMEVVRDKNDNCII  230 (1073)
T ss_dssp             HHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHC----TTSCEEEEECCTTSEEEEEEEEECTTCCEEE
T ss_pred             HHHHHHHcCCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhC----CCCcEEEEEccCCCeEEEEEEEEeCCCCEEE
Confidence            999999999999999999999999999999999999998876542    3468999999999889999999999999988


Q ss_pred             Eeeccchhhc
Q 021372          293 FGERDCSIQV  302 (313)
Q Consensus       293 ~~~r~~s~~r  302 (313)
                      +    |++++
T Consensus       231 ~----~~~e~  236 (1073)
T 1a9x_A          231 V----CSIEN  236 (1073)
T ss_dssp             E----EEEEE
T ss_pred             E----EEEec
Confidence            8    55554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=99.96  E-value=5.9e-28  Score=227.49  Aligned_cols=202  Identities=18%  Similarity=0.266  Sum_probs=172.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +.++|+|+|+|.+++.++++++++|++|++++.+++.  +...++|..+..       ++.+.+.+.+++++  +|+|.+
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~--~~~~~ad~~~~~-------~~~d~~~l~~~~~~--~dvI~~   81 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNS--PCAQVADIEIVA-------SYDDLKAIQHLAEI--SDVVTY   81 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC--TTTTTCSEEEEC-------CTTCHHHHHHHHHT--CSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC--chHHhCCceEec-------CcCCHHHHHHHHHh--CCEeee
Confidence            3679999999999999999999999999999766543  446778887743       36778899999865  788865


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      .+  .......++.+++.|+  ++++++++..+.||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||.
T Consensus        82 ~~--e~~~~~~~~~l~~~g~--~~~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~  155 (389)
T 3q2o_A           82 EF--ENIDYRCLQWLEKHAY--LPQGSQLLSKTQNRFTEKNAIEKAGLPVATYR--LVQNQEQLTEAIAELSYPSVLKTT  155 (389)
T ss_dssp             SC--CCCCHHHHHHHHHHSC--CTTCSHHHHHTTSHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEEES
T ss_pred             cc--ccccHHHHHHHHhhCc--cCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhcCCCEEEEeC
Confidence            43  3344567778888887  67999999999999999999999999999995  889999999999999999999999


Q ss_pred             cCCC-CccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          230 AGGG-GRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       230 ~g~g-g~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      .|++ |+|++++++.+|+.++++.+.        +.++|+||||+|.+|+++.+++|.+|+++.++..
T Consensus       156 ~~~~~g~Gv~~v~~~~el~~~~~~~~--------~~~~lvEe~i~g~~E~~v~~~~~~~G~~~~~~~~  215 (389)
T 3q2o_A          156 TGGYDGKGQVVLRSEADVDEARKLAN--------AAECILEKWVPFEKEVSVIVIRSVSGETKVFPVA  215 (389)
T ss_dssp             SCCSSSCCEEEESSGGGHHHHHHHHH--------HSCEEEEECCCCSEEEEEEEEECTTCCEEECCCE
T ss_pred             CCCCCCCCeEEECCHHHHHHHHHhcC--------CCCEEEEecccCceEEEEEEEEcCCCCEEEecCe
Confidence            9975 799999999999999988753        2789999999988999999999988988777543

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=99.96  E-value=1.8e-28  Score=229.37  Aligned_cols=196  Identities=17%  Similarity=0.291  Sum_probs=163.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      ||||+|+|.+++.++++++++|+++++++++++.+  ...++|. +..       ++.+.+.+++++  +++|+|+++++
T Consensus         1 ~iliiG~g~~g~~~~~a~~~~G~~v~~~~~~~~~~--~~~~a~~-~~~-------~~~d~~~l~~~~--~~~d~v~~~~e   68 (369)
T 3aw8_A            1 MIGILGGGQLGRMLALAGYPLGLSFRFLDPSPEAC--AGQVGEL-VVG-------EFLDEGALLRFA--EGLALVTYEFE   68 (369)
T ss_dssp             CEEEECCSHHHHHHHHHHTTBTCCEEEEESCTTCG--GGGTSEE-EEC-------CTTCHHHHHHHH--TTCSEEEECCT
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCh--HHHhhce-Eec-------CCCCHHHHHHHH--hCCCEEEECCC
Confidence            59999999999999999999999999998665433  3456776 433       256788999998  68999999875


Q ss_pred             cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCC
Q 021372          153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGG  232 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~  232 (313)
                      ..  ...+++.+++.|  ++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||..|+
T Consensus        69 ~~--~~~~~~~l~~~g--~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~~~~  142 (369)
T 3aw8_A           69 NV--PVEAARRLEGRL--PLYPPAKALEVAQDRLREKTFFQGLGVPTPPFH--PVDGPEDLEEGLKRVGLPALLKTRRGG  142 (369)
T ss_dssp             TC--CHHHHHHHHHHS--CBSSCHHHHHHHTCHHHHHHHHHHHTCCCCCEE--EESSHHHHHHHHTTTCSSEEEEECCC-
T ss_pred             Cc--CHHHHHHHHHcC--CcCCCHHHHHHhcCHHHHHHHHHHCCCCCCCce--eeCCHHHHHHHHHHcCCCEEEEEcCCC
Confidence            43  356667888888  688999999999999999999999999999995  889999999999999999999999999


Q ss_pred             -CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          233 -GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       233 -gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                       +|+||+++++.+|+.++++.+        ++..+++||||++++|+++.++.|.+|+++.++
T Consensus       143 ~~g~Gv~~v~~~~el~~~~~~~--------~~~~~lvEe~i~~g~e~sv~~~~d~~G~~~~~~  197 (369)
T 3aw8_A          143 YDGKGQALVRTEEEALEALKAL--------GGRGLILEGFVPFDREVSLLAVRGRTGEVAFYP  197 (369)
T ss_dssp             -----EEEECSHHHHHHHHTTT--------CSSSEEEEECCCCSEEEEEEEEECTTSCEEECC
T ss_pred             CCcceEEEECCHHHHHHHHHhc--------CCCcEEEEEcCCCCEEEEEEEEECCCCCEEEEC
Confidence             999999999999999988764        247899999999339999999999888887654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=99.96  E-value=6.9e-28  Score=226.23  Aligned_cols=202  Identities=19%  Similarity=0.290  Sum_probs=169.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++++|+|+|+|.+|+.++++++++|++|++++.+++  .+...++|+.+..+       +.+.+.+.+++++  +|+|.+
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~--~p~~~~ad~~~~~~-------~~d~~~l~~~~~~--~dvi~~   79 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED--CPCRYVAHEFIQAK-------YDDEKALNQLGQK--CDVITY   79 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT--CTTGGGSSEEEECC-------TTCHHHHHHHHHH--CSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--ChhhhhCCEEEECC-------CCCHHHHHHHHHh--CCccee
Confidence            468999999999999999999999999999976655  44567888877542       6778899999876  788876


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      .+  ..-.....+.+++.+  .++|+++++..+.||..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||.
T Consensus        80 ~~--E~~~~~~l~~l~~~~--~v~p~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~g~P~vvKp~  153 (377)
T 3orq_A           80 EF--ENISAQQLKLLCEKY--NIPQGYQAIQLLQDRLTEKETLKSAGTKVVPFI--SVKESTDIDKAIETLGYPFIVKTR  153 (377)
T ss_dssp             SS--TTSCHHHHHHHHHHS--CCTTTTHHHHHHHSHHHHHHHHHHTTCCBCCEE--EECSSTHHHHHHHHTCSSEEEEES
T ss_pred             cc--cccCHHHHHHHhhhc--CCCCCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEeC
Confidence            54  212234455565554  345899999999999999999999999999995  888999999999999999999999


Q ss_pred             cCC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeec
Q 021372          230 AGG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGER  296 (313)
Q Consensus       230 ~g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r  296 (313)
                      .|+ +|+|++++++.+|+.++++.+.        ..++|+||||+|.+|+++.++++.+|++..++..
T Consensus       154 ~gg~~g~Gv~~v~~~~el~~a~~~~~--------~~~~ivEe~i~g~~E~sv~~~~~~~g~~~~~~~~  213 (377)
T 3orq_A          154 FGGYDGKGQVLINNEKDLQEGFKLIE--------TSECVAEKYLNIKKEVSLTVTRGNNNQITFFPLQ  213 (377)
T ss_dssp             SSCCTTTTEEEECSTTSHHHHHHHHT--------TSCEEEEECCCEEEEEEEEEEECGGGCEEECCCE
T ss_pred             CCCCCCCCeEEECCHHHHHHHHHhcC--------CCcEEEEccCCCCEEEEEEEEEeCCCCEEEECCE
Confidence            997 8999999999999999988763        3789999999998899999998878888777443

>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}

Probab=99.96  E-value=1.7e-28  Score=233.61  Aligned_cols=221  Identities=12%  Similarity=0.176  Sum_probs=167.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ...|+|+|+|++.....++++++++|++|++++++++....+...+|+++.++.  ..+.....+.+.++++++++|+|+
T Consensus         3 ~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~--~~d~~~~~~~~~~~~~~~~id~V~   80 (425)
T 3vot_A            3 KRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPL--FEDEEAAMDVVRQTFVEFPFDGVM   80 (425)
T ss_dssp             CCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECT--TTCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             CCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCC--CCCHHHHHHHHHHhhhhcCCCEEE
Confidence            347899999999888889999999999999999888877777778888887642  112222355667777889999999


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKA  228 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP  228 (313)
                      +..+..  ....+.+.+.+|++  |++++++..+.||..++++|+++|||+|+++  .+++.+++..  .++|||+||||
T Consensus        81 ~~~e~~--~~~~a~l~e~lglp--g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~--~~~g~P~vvKp  152 (425)
T 3vot_A           81 TLFEPA--LPFTAKAAEALNLP--GLPFTTMENCRNKNKTRSILQQNGLNTPVFH--EFHTLADLEN--RKLSYPLVVKP  152 (425)
T ss_dssp             CCCGGG--HHHHHHHHHHTTCS--SCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EESSGGGGTT--CCCCSSEEEEE
T ss_pred             ECCchh--HHHHHHHHHHcCCC--CCCHHHHHHhhCHHHHHHHHHHCCCCCCcee--ccCcHHHHHH--hhcCCcEEEEE
Confidence            764211  12334555677875  7999999999999999999999999999985  7888877643  57899999999


Q ss_pred             ccCCCCccEEEeCCHHHHHHHHHHHHHHHHh-----cCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE--Eeeccchhh
Q 021372          229 TAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA-----AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH--FGERDCSIQ  301 (313)
Q Consensus       229 ~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~-----~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~--~~~r~~s~~  301 (313)
                      ..|+||+||+++++.+|+.++++.+......     ...+..+++||||+| .|++|+++.+ +|++..  +.++.++..
T Consensus       153 ~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~G-~e~sv~~~~~-~g~~~~~~~~~~~~~~~  230 (425)
T 3vot_A          153 VNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFIDG-PEFAIETLSI-QGNVHVLSIGYKGNSKG  230 (425)
T ss_dssp             SCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCCS-CEEEEEEEEE-TTEEEEEEEEEEECCCC
T ss_pred             CCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEecC-cEEEEEEEEe-CCcEEEEeEEEEeccCC
Confidence            9999999999999999999999987653211     123568999999999 9999999987 455544  344444433

>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}

Probab=99.96  E-value=7.9e-28  Score=221.36  Aligned_cols=208  Identities=14%  Similarity=0.150  Sum_probs=146.2

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHc-C-CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEM-G-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~-G-~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      ||+++|||+|+|.. ..+++++++. | ++|++++.++...  ...++|+.+.++ ..+  +..+.+.++++++++++|+
T Consensus         2 m~~~~Ili~g~g~~-~~l~~~l~~~~~~~~v~~~d~~~~~~--~~~~~d~~~~~~-~~~--~~~~~~~l~~~~~~~~~d~   75 (331)
T 2pn1_A            2 MQKPHLLITSAGRR-AKLVEYFVKEFKTGRVSTADCSPLAS--ALYMADQHYIVP-KID--EVEYIDHLLTLCQDEGVTA   75 (331)
T ss_dssp             TTCCEEEEESCTTC-HHHHHHHHHHCCSSEEEEEESCTTCG--GGGGSSSEEECC-CTT--STTHHHHHHHHHHHHTCCE
T ss_pred             CccceEEEecCCch-HHHHHHHHHhcCCCEEEEEeCCCcch--hHHhhhceecCC-CCC--ChhHHHHHHHHHHHcCCCE
Confidence            35679999998865 5688888886 7 8999997665543  355788877553 121  2234889999999999999


Q ss_pred             EeeccCcCcc-cHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHH--HHhCCc
Q 021372          147 LHPGYGFLAE-NAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA--DELGFP  223 (313)
Q Consensus       147 vip~~g~~~e-~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~--~~lg~P  223 (313)
                      |+|+.+.... ...+.+.++..|++++|++++++..+.||..++++|+++|||+|+++  .  +.+++.+++  ++++||
T Consensus        76 vi~~~~~~~~~~a~~~~~l~~~g~~~~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~--~~~~~~~~~~~~~~~~P  151 (331)
T 2pn1_A           76 LLTLIDPELGLLAQATERFQAIGVTVIVSPYAACELCFDKYTMYEYCLRQGIAHARTY--A--TMASFEEALAAGEVQLP  151 (331)
T ss_dssp             EEESSHHHHHHHHHTHHHHHTTTCEECCCCHHHHHHHHBHHHHHHHHHHHTCCCCCEE--S--SHHHHHHHHHTTSSCSC
T ss_pred             EEeCCchhHHHHHHHHHHHHhCCcEEecCCHHHHHHhhCHHHHHHHHHHcCCCCCcEE--e--cHHHhhhhhhcccCCCC
Confidence            9987532111 13345667777999999999999999999999999999999999984  2  456666665  478999


Q ss_pred             EEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEc-CCCCEEEEeecc
Q 021372          224 VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLAD-KYGNVVHFGERD  297 (313)
Q Consensus       224 ~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d-~~G~vv~~~~r~  297 (313)
                      +|+||..|++|+||+++++.+|+.++++.          ..++++||||+| .|+++.++.| .+|+++.+..+.
T Consensus       152 ~vvKp~~g~g~~gv~~v~~~~el~~~~~~----------~~~~lvee~i~G-~e~~v~~~~d~~~G~~~~~~~~~  215 (331)
T 2pn1_A          152 VFVKPRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLVG-QELGVDAYVDLISGKVTSIFIKE  215 (331)
T ss_dssp             EEEEESBC---------------------------------CEEEEECCCS-EEEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEEEeCCCCCCCCeEEeCCHHHHHHHHHh----------CCCeEEEecCCC-cEEEEEEEEecCCCeEEEEEEEE
Confidence            99999999999999999999999887654          268999999999 9999999998 788988765543

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=99.95  E-value=1.5e-27  Score=222.48  Aligned_cols=199  Identities=17%  Similarity=0.171  Sum_probs=158.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ||||+|+|+|..++.++++|+++|++|++++.+++.  +...++|+.+.+++      +.+.+.++.++  +++|+|+|+
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~--~~~~~aD~~~~~~~------~~d~~~~~~~~--~~~D~v~~~   70 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA--LIRNYADEFYCFDV------IKEPEKLLELS--KRVDAVLPV   70 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC--TTTTTSSEEEECCT------TTCHHHHHHHH--TSSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC--hhHhhCCEEEECCC------CcCHHHHHHHh--cCCCEEEEC
Confidence            689999999999999999999999999999776654  45778999887752      33456666655  579999999


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      ++...+.......+++.+++ +||+++++..+.||..++++|+++|+|+|+++               .+|||+|+||..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip~~~~~---------------~ig~P~vvKp~~  134 (363)
T 4ffl_A           71 NENLACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVPTPQDR---------------PSKPPYFVKPPC  134 (363)
T ss_dssp             CCCHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCCCCCBS---------------CSSSCEEEECSS
T ss_pred             CCChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCCCCCce---------------ecCCCEEEEECC
Confidence            86554444555556666665 57999999999999999999999999999874               258999999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      |+||+|+++++|.+++..             ....+++||||+| +|++|+++.|+.+.++....+++..++..++.+.
T Consensus       135 g~g~~gv~~v~~~~~~~~-------------~~~~~~~ee~i~g-~e~sv~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  199 (363)
T 4ffl_A          135 ESSSVGARIIYDDKDLEG-------------LEPDTLVEEYVEG-EVVSLEVVGDGSHFAVVKETLVHIDETYDCHMVT  199 (363)
T ss_dssp             CCTTTTCEEEC------C-------------CCTTCEEEECCCS-EEEEEEEEEESSCEEECCCEEEEECTTSCEEEEE
T ss_pred             CCCCcCeEEeccHHHhhh-------------hccchhhhhhccC-cEEEEEEEEECCeEEEEEEEEeccCCcccceeec
Confidence            999999999999887643             2368999999999 9999999999877777777777777766665543

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=99.95  E-value=2.1e-27  Score=222.83  Aligned_cols=194  Identities=23%  Similarity=0.404  Sum_probs=158.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |+||||+|+|.+++.++++|+++|++++++++++..+  ...+++..+..+       +.+.+.+.+++  +++|+|+++
T Consensus         1 M~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~~~~--~~~~~~~~~~~~-------~~d~~~l~~~~--~~~d~v~~~   69 (380)
T 3ax6_A            1 MKKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTPRSP--AGQVADEQIVAG-------FFDSERIEDLV--KGSDVTTYD   69 (380)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCT--TGGGSSEEEECC-------TTCHHHHHHHH--HTCSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCc--hhhhCceEEECC-------CCCHHHHHHHH--hcCCEEEec
Confidence            4789999999999999999999999999997765543  345777766443       56678898888  579999987


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      ++...  ...++.+++.|++ ++++++++..+.||..++++|+++|||+|+++  .+.+.++   ++++++||+|+||..
T Consensus        70 ~e~~~--~~~~~~l~~~gi~-~~~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~---~~~~~~~P~vvKp~~  141 (380)
T 3ax6_A           70 LEHID--VQTLKKLYNEGYK-IHPSPYTLEIIQDKFVQKEFLKKNGIPVPEYK--LVKDLES---DVREFGFPVVQKARK  141 (380)
T ss_dssp             CSCSC--HHHHHHHHHTTCE-ESSCHHHHHHHHSHHHHHHHHHHTTCCCCCEE--ECSSHHH---HHHTTCSSEEEEESC
T ss_pred             ccCCC--HHHHHHHHHCCCe-ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCeE--EeCCHHH---HHHhcCCCEEEEecC
Confidence            64322  4566788899998 56999999999999999999999999999985  7788776   667899999999999


Q ss_pred             CC-CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          231 GG-GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       231 g~-gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      |+ +|+||+++++.+|+.++++            .++++||||+++.|+++.++.|.+|+++.++-
T Consensus       142 ~~y~g~Gv~~v~~~~el~~~~~------------~~~lvEe~i~~g~e~sv~~~~~~~G~~~~~~~  195 (380)
T 3ax6_A          142 GGYDGRGVFIIKNEKDLENAIK------------GETYLEEFVEIEKELAVMVARNEKGEIACYPV  195 (380)
T ss_dssp             CC-----EEEECSGGGGGGCCC------------SSEEEEECCCEEEEEEEEEEECSSCCEEEEEE
T ss_pred             CCCCCCCeEEECCHHHHHHHhc------------CCEEEEeccCCCeeEEEEEEECCCCCEEEECC
Confidence            99 9999999999999876543            57999999993399999999998888876643

>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}

Probab=99.95  E-value=5.1e-27  Score=224.66  Aligned_cols=207  Identities=18%  Similarity=0.246  Sum_probs=166.0

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      +..|+.+||||+|+|.....+++++++. ++..+++.+. +   ......++.+.+       ++.+.+.++++++++++
T Consensus        16 ~~~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pg-n---~g~~~~~~~~~i-------~~~d~~~l~~~a~~~~i   84 (442)
T 3lp8_A           16 TQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPG-R---EGMSGLADIIDI-------DINSTIEVIQVCKKEKI   84 (442)
T ss_dssp             ----CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEEC-C---GGGTTTSEECCC-------CTTCHHHHHHHHHHTTC
T ss_pred             cCCCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECC-C---hHHhhccceeec-------CcCCHHHHHHHHHHhCC
Confidence            3456678999999998888899999887 4454555322 2   122233443333       35789999999999999


Q ss_pred             CEEeeccCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC
Q 021372          145 TMLHPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG  221 (313)
Q Consensus       145 d~vip~~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg  221 (313)
                      |+|+++.    |..   .+++.+++.|++++||+.+++..+.||..++++|+++|||+|+++  .+++.+++.+++++++
T Consensus        85 d~vv~g~----E~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIp~p~~~--~~~~~~ea~~~~~~~g  158 (442)
T 3lp8_A           85 ELVVIGP----ETPLMNGLSDALTEEGILVFGPSKAAARLESSKGFTKELCMRYGIPTAKYG--YFVDTNSAYKFIDKHK  158 (442)
T ss_dssp             CEEEECS----HHHHHTTHHHHHHHTTCEEESCCHHHHHHHHCHHHHHHHHHHHTCCBCCEE--EESSHHHHHHHHHHSC
T ss_pred             CEEEECC----cHHHHHHHHHHHHhcCCcEecCCHHHHHHhhCHHHHHHHHHHCCCCCCCEE--EECCHHHHHHHHHHcC
Confidence            9999864    443   367788999999999999999999999999999999999999995  8899999999999999


Q ss_pred             CcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          222 FPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       222 ~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ||+|+||..+++|+||+++++.+|+.++++.+...  ..++  ...++|||||+| +|+++.++.|+. .++.+
T Consensus       159 ~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~--~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~  228 (442)
T 3lp8_A          159 LPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVH--HKFGEAGCAIIIEEFLEG-KEISFFTLVDGS-NPVIL  228 (442)
T ss_dssp             SSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEESS-CEEEE
T ss_pred             CcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhh--cccCCCCCeEEEEEeecC-cEEEEEEEECCC-eEEEe
Confidence            99999999999999999999999999999987631  1122  268999999999 999999999854 55544

>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A

Probab=99.95  E-value=9.3e-27  Score=223.44  Aligned_cols=209  Identities=24%  Similarity=0.332  Sum_probs=160.8

Q ss_pred             CcCcccccccEEEEEcCCHhHHHHHHHH-HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           63 GALKVTCRQEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        63 ~~~~~~~~~~~ILIig~g~~a~~v~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      |.++...+.++|||+|+|.....++.++ +++|++++++++. ++.  ....++ .+.+       ++.+.+.+++++++
T Consensus        13 ~~~~~~~~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~-~~~--~~~~~~-~~~~-------~~~d~~~l~~~~~~   81 (451)
T 2yrx_A           13 GENLYFQSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPG-NPG--IADVAE-LVHI-------DELDIEALVQFAKQ   81 (451)
T ss_dssp             --CCCCCSSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEEC-CTT--GGGTSE-ECCC-------CTTCHHHHHHHHHH
T ss_pred             ccccccCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-Chh--hhhhCc-eecc-------CCCCHHHHHHHHHH
Confidence            4444444568999999996555666555 4579998877643 222  122333 2212       25678999999999


Q ss_pred             cCCCEEeeccCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372          142 RGCTMLHPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD  218 (313)
Q Consensus       142 ~~id~vip~~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~  218 (313)
                      +++|+|+++.    |+.   .+++.+++.|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.+++.++++
T Consensus        82 ~~~d~vi~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~  155 (451)
T 2yrx_A           82 QAIDLTIVGP----EAPLASGIVDRFMAEGLRIFGPSQRAALIEGSKAFAKELMKKYGIPTADHA--AFTSYEEAKAYIE  155 (451)
T ss_dssp             TTCSEEEECS----HHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHH
T ss_pred             cCCCEEEECC----chHHHHHHHHHHHHCCCCEeCccHHHHHHhhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHH
Confidence            9999999864    432   456778889999999999999999999999999999999999985  8899999999999


Q ss_pred             HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      +++||+|+||..|++|+||+++++.+|+.++++.+...  ..++  ..++++||||+| .|+++.++.|  |+.+..
T Consensus       156 ~~~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~G-~E~sv~~~~d--G~~~~~  227 (451)
T 2yrx_A          156 QKGAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVD--GQFGTAGSQVVIEEYLEG-EEFSFMAFVN--GEKVYP  227 (451)
T ss_dssp             HHCSSEEEEECC----CCEEEESSHHHHHHHHHHHHHH--SCCBTTBCCEEEEECCCS-EEEEEEEEEE--TTEEEE
T ss_pred             hcCCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhc--cccCCCCCeEEEEECCcC-cEEEEEEEEc--CCEEEE
Confidence            99999999999999999999999999999999887652  1122  368999999999 9999999986  444443

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=226.95  Aligned_cols=209  Identities=19%  Similarity=0.256  Sum_probs=159.7

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHH-HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      ..++|++||||+|+|.....+++.+ +++|++++++++.....  . ..++ ...+.     .++.+.+.++++++++++
T Consensus        19 ~~~~m~~~IlIlG~g~r~~al~~~~a~~~g~~~v~~~~~~~~~--~-~~~~-~~~~~-----~~~~d~~~l~~~~~~~~~   89 (452)
T 2qk4_A           19 YFQSMAARVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGT--A-CSEK-ISNTA-----ISISDHTALAQFCKEKKI   89 (452)
T ss_dssp             ---CCSEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGG--S-BSSS-EEECC-----CCSSCHHHHHHHHHHHTC
T ss_pred             cccccCcEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhh--h-hhcc-ccccc-----cCCCCHHHHHHHHHHcCC
Confidence            3444678999999997656666665 55799987776543322  1 2222 22221     136789999999999999


Q ss_pred             CEEeeccCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhC
Q 021372          145 TMLHPGYGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG  221 (313)
Q Consensus       145 d~vip~~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg  221 (313)
                      |+|+++.    |+.   .+++.+++.|++++||+++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++
T Consensus        90 d~V~~~~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~g  163 (452)
T 2qk4_A           90 EFVVVGP----EAPLAAGIVGNLRSAGVQCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWK--AFTKPEEACSFILSAD  163 (452)
T ss_dssp             CEEEECS----SHHHHTTHHHHHHHTTCCEESCCTTTTHHHHBHHHHHHHHHHTTCCBCCEE--EESSHHHHHHHHHHCS
T ss_pred             CEEEECC----cHHHHHHHHHHHHhcCCcEeCcCHHHHHHhcCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHhCC
Confidence            9999864    443   456778889999999999999999999999999999999999985  8899999999999999


Q ss_pred             Cc-EEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          222 FP-VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       222 ~P-~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      || +|+||..|++|+||+++++.+|+.++++.+....  .++  ..++++||||+| .|+++.++.|++ .++.+
T Consensus       164 ~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~--~~g~~~~~~lvEe~i~G-~E~sv~~~~dG~-~~~~~  234 (452)
T 2qk4_A          164 FPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEK--AFGAAGETIVIEELLDG-EEVSCLCFTDGK-TVAPM  234 (452)
T ss_dssp             SCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC---------CCEEEEECCCS-EEEEEEEEECSS-CEEEC
T ss_pred             CCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhh--hccCCCCeEEEEECCCC-CeEEEEEEECCC-EEEEc
Confidence            99 9999999999999999999999999998764311  121  368999999998 999999998533 34444

>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}

Probab=99.95  E-value=1.4e-26  Score=219.86  Aligned_cols=192  Identities=20%  Similarity=0.286  Sum_probs=158.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHH-cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~-~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+|+|.....+++++++ .|++++++++.. +.  .... +..  + +     ++.+.+.++++++++++|+|+++
T Consensus         1 mkililG~g~r~~a~a~~l~~~~g~~~v~~~~~~-~~--~~~~-~~~--~-~-----~~~d~~~l~~~~~~~~~d~v~~~   68 (417)
T 2ip4_A            1 MKVLVVGSGGREHALLWKAAQSPRVKRLYAAPGN-AG--MEAL-AEL--V-P-----WNGDVEALADWALAEGIDLTLVG   68 (417)
T ss_dssp             CEEEEEESSHHHHHHHHHHHTCSSCCEEEEEECC-TT--GGGT-SEE--C-C-----CCSCHHHHHHHHHHHTCCEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCC-cc--hhhh-ccc--C-C-----CccCHHHHHHHHHHcCCCEEEEC
Confidence            379999999666667777755 799988886532 11  1222 222  2 1     36779999999999999999986


Q ss_pred             cCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       151 ~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      .    |+.   .+++.+++.|++++||+++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+|
T Consensus        69 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~vvK  142 (417)
T 2ip4_A           69 P----EAPLVEGIADAFQARGLLLFGPTQKAAMIEGSKAFAKGLMERYGIPTARYR--VFREPLEALAYLEEVGVPVVVK  142 (417)
T ss_dssp             S----SHHHHTTHHHHHHHHTCCEESCCHHHHHHHHCHHHHHHHHHHTCCCBCCEE--EESSHHHHHHHHHHHCSSEEEE
T ss_pred             C----chHHHHHHHHHHHHCCCCEECccHHHHHHHcCHHHHHHHHHHcCCCCCCee--eeCCHHHHHHHHHHcCCCEEEE
Confidence            4    443   466778889999999999999999999999999999999999985  8899999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      |..|++|+||+++++.+|+.++++.+..   ..++ .++++||||+| .|+++.++.|+
T Consensus       143 p~~~~gg~Gv~~v~~~~el~~~~~~~~~---~~~~-~~~lvEe~i~g-~E~sv~~~~~G  196 (417)
T 2ip4_A          143 DSGLAAGKGVTVAFDLHQAKQAVANILN---RAEG-GEVVVEEYLEG-EEATVLALTDG  196 (417)
T ss_dssp             CTTSCSSTTCEEESCHHHHHHHHHHHTT---SSSC-CCEEEEECCCS-CEEEEEEEESS
T ss_pred             ECCCCCCCCEEEeCCHHHHHHHHHHHHh---hccC-CeEEEEECccC-cEEEEEEEEeC
Confidence            9999999999999999999999987641   1122 68999999998 99999999863

>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A

Probab=99.95  E-value=7.7e-27  Score=222.13  Aligned_cols=200  Identities=21%  Similarity=0.337  Sum_probs=160.9

Q ss_pred             cEEEEEcCCHhHHHHHHHH-HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+|+|.....++.++ +++|++++++++. +..  ...+++ .+.+       ++.+.+.++++++++++|+|+++
T Consensus         1 m~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~-~~~--~~~~~~-~~~~-------~~~d~~~l~~~~~~~~~d~v~~~   69 (424)
T 2yw2_A            1 MKVLVVGNGGREHAIAWKVAQSPLVKELYVAKG-NAG--IWEIAK-RVDI-------SPTDVEKLAEFAKNEGVDFTIVG   69 (424)
T ss_dssp             CEEEEEESSHHHHHHHHHHTTCTTCSEEEEEEC-CTT--GGGTSE-EECS-------CTTCHHHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCCCEEEEECC-Ccc--hhhhcc-cccC-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence            4799999996555555555 4579998888653 222  123343 3322       35679999999999999999986


Q ss_pred             cCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       151 ~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      .    |+.   .+++.+++.|++++||+++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+|
T Consensus        70 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~PvvvK  143 (424)
T 2yw2_A           70 P----EAPLVEGIVDEFEKRGLKIFGPNKEAAKLEGSKAFAKTFMKKYGIPTARYE--VFTDFEKAKEYVEKVGAPIVVK  143 (424)
T ss_dssp             S----HHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHHHHCSSEEEE
T ss_pred             C----chHHHHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHHcCCcEEEE
Confidence            4    443   456778899999999999999999999999999999999999995  8899999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      |..|++|+||+++++.+|+.++++.+...  ..++  ..++++||||+| .|+++.++.|  |+.+..
T Consensus       144 p~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~g~~~~~~lvEe~i~g-~E~sv~~~~~--G~~~~~  206 (424)
T 2yw2_A          144 ADGLAAGKGAVVCETVEKAIETLDRFLNK--KIFGKSSERVVIEEFLEG-EEASYIVMIN--GDRYVP  206 (424)
T ss_dssp             ESSCCTTCSEEEESSHHHHHHHHHHHHTS--CTTGGGGSSEEEEECCCS-EEEEEEEEEE--TTEEEE
T ss_pred             eCCCCCCCCEEEECCHHHHHHHHHHHHhh--hhccCCCCeEEEEECCCC-cEEEEEEEEc--CCEEEe
Confidence            99999999999999999999999887541  1122  268999999998 9999999986  444443

>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A

Probab=99.95  E-value=3.7e-26  Score=218.06  Aligned_cols=207  Identities=18%  Similarity=0.236  Sum_probs=164.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++||||+|+|.....+++++++.+. ..+++. ..++..  ...+. ...+.     .++.+.+.++++++++++|+|++
T Consensus         3 ~mkvlviG~ggre~ala~~l~~s~~v~~v~~~-pgn~g~--~~~~~-~~~~~-----~~~~d~~~l~~~a~~~~id~vv~   73 (431)
T 3mjf_A            3 AMNILIIGNGGREHALGWKAAQSPLADKIYVA-PGNAGT--ALEPT-LENVD-----IAATDIAGLLAFAQSHDIGLTIV   73 (431)
T ss_dssp             CEEEEEEECSHHHHHHHHHHTTCTTEEEEEEE-ECCHHH--HHCTT-CEECC-----CCTTCHHHHHHHHHHTTEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-CCCHHH--hhhcc-cceec-----CCcCCHHHHHHHHHHhCcCEEEE
Confidence            4789999999887889999988753 333332 222211  12222 21121     12567899999999999999998


Q ss_pred             ccCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372          150 GYGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI  226 (313)
Q Consensus       150 ~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv  226 (313)
                      +.    |.   ..+++.+++.|++++||+.+++..+.||..++++|+++|||+|+++  .+++.+++.+++++++||+||
T Consensus        74 g~----e~~l~~~~~~~l~~~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~GIptp~~~--~~~~~~ea~~~~~~~g~PvVv  147 (431)
T 3mjf_A           74 GP----EAPLVIGVVDAFRAAGLAIFGPTQAAAQLEGSKAFTKDFLARHNIPSAEYQ--NFTDVEAALAYVRQKGAPIVI  147 (431)
T ss_dssp             CS----HHHHHTTHHHHHHHTTCCEESCCHHHHHHHHCHHHHHHHHHHTTCSBCCEE--EESCHHHHHHHHHHHCSSEEE
T ss_pred             CC----chHHHHHHHHHHHhcCCCeeCCCHHHHHHhhCHHHHHHHHHHcCCCCCCeE--eeCCHHHHHHHHHHcCCeEEE
Confidence            64    33   2467888999999999999999999999999999999999999995  889999999999999999999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      ||..+++|+||++++|.+|+.++++.+.....-......++|||||+| .|+++.++.|+. +++.++
T Consensus       148 Kp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~G-~E~sv~~~~dg~-~~~~~~  213 (431)
T 3mjf_A          148 KADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLDG-EEASFIVMVDGE-NVLPMA  213 (431)
T ss_dssp             EESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCCS-EEEEEEEEEESS-CEEECC
T ss_pred             EECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeCC-cEEEEEEEEcCC-EEEEEE
Confidence            999999999999999999999999987632111111358999999999 999999999864 666653

>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*

Probab=99.94  E-value=3.5e-26  Score=217.44  Aligned_cols=195  Identities=22%  Similarity=0.288  Sum_probs=159.1

Q ss_pred             cEEEEEcCCHhHHHHHHHHH-HcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAH-EMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~-~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||||+|+|.....++.+++ ++|++++++++. ++.  ...+++ .+..       ++.+.+.++++++++++|+|+++
T Consensus         1 m~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~-~~~--~~~~~~-~~~~-------~~~d~~~l~~~~~~~~~d~v~~~   69 (422)
T 2xcl_A            1 MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPG-NDG--MAASAQ-LVNI-------EESDHAGLVSFAKQNQVGLTIVG   69 (422)
T ss_dssp             CEEEEEECSHHHHHHHHHHTTCTTCSEEEEEEC-CGG--GTTTCE-ECCC-------CTTCHHHHHHHHHHTTEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCC-Chh--hhhhcc-cccc-------CcCCHHHHHHHHHHcCCCEEEEC
Confidence            37999999966666666664 479999888654 222  223344 2211       35678999999999999999986


Q ss_pred             cCcCcccH---HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          151 YGFLAENA---VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       151 ~g~~~e~~---~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      .    |..   .+++.+++.|++++||+++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+|
T Consensus        70 ~----E~~~~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~~~~~~~~~~~~P~vvK  143 (422)
T 2xcl_A           70 P----EVPLIEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPTAEYE--TFTSFDEAKAYVQEKGAPIVIK  143 (422)
T ss_dssp             S----HHHHHTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCBCCEE--EESCHHHHHHHHHHHCSSEEEE
T ss_pred             C----cHHHHHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHhcCCCEEEE
Confidence            4    433   456778889999999999999999999999999999999999995  8899999999999999999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC--CCcEEEeeccCCCcEEEEEEEEcC
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG--NDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~--~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      |..|++|+||+++++.+|+.++++.+....  .++  ..++++||||+| .|+++.++.|+
T Consensus       144 p~~~~~g~Gv~~v~~~~el~~~~~~~~~~~--~~g~~~~~~lvEe~i~g-~E~sv~~~~dG  201 (422)
T 2xcl_A          144 ADGLAAGKGVTVAMTEEEAIACLHDFLEDE--KFGDASASVVIEEYLSG-EEFSLMAFVKG  201 (422)
T ss_dssp             ESSCGGGTCEEEESSHHHHHHHHHHHHTSC--TTGGGGSSEEEEECCCS-EEEEEEEEEET
T ss_pred             eCCCCCCCcEEEECCHHHHHHHHHHHHhhh--hccCCCCeEEEEECCcC-cEEEEEEEEcC
Confidence            999999999999999999999998875410  111  268999999998 99999999864

>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}

Probab=99.94  E-value=2.2e-27  Score=221.24  Aligned_cols=225  Identities=16%  Similarity=0.153  Sum_probs=162.9

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchh-----------hhhhcCceE----EccCCCCC
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDAL-----------HVKLADESV----CIGEAPSS  126 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~-----------~~~~ad~~~----~v~~~~~~  126 (313)
                      +|||.|+.+|.         +|..++++|++.||+|+.++.+.+....           .....+...    .+.+....
T Consensus         3 kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~~gy~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (357)
T 4fu0_A            3 NKKIAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWFEDSKNLCPVVVSQNRSV   82 (357)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECSCTHHHHTTCGGGCGGGEEEEEECCCTTT
T ss_pred             CCEEEEEECCCccchHHHHHHHHHHHHHHhHhCCEEEEEEEeCCCceeecCCCHHHhhcCcchhhhhccccccccccccc
Confidence            56787775443         3778999999999999999765442111           111111111    11111111


Q ss_pred             CCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc
Q 021372          127 QSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG  205 (313)
Q Consensus       127 ~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~  205 (313)
                      ..  ..+......+..++|+|++. +|...|+..+..+|+..|+++.|+++.++..+.||..++++|+++|||+|+++  
T Consensus        83 ~~--~~~~~~~~~~~~~~D~vf~~l~G~~gEdg~~q~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--  158 (357)
T 4fu0_A           83 KG--FLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIPVVGCDTLSSALCMDKDRAHKLVSLAGISVPKSV--  158 (357)
T ss_dssp             CE--EEEC----CEEEECSEEEECCCSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCBCCCEE--
T ss_pred             cc--hhhhhhhhHhhcCCCEEEECCcCccccCHHHHHHHHHCCCcEECcCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--
Confidence            11  11233344455679999998 68888999999999999999999999999999999999999999999999985  


Q ss_pred             cCCC---HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEE
Q 021372          206 LLQS---TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV  282 (313)
Q Consensus       206 ~~~~---~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v  282 (313)
                      .+.+   .+++.++++++|||+||||..|++|+||.++++.+||.++++.+...      +..+++|+||+| +|+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~------~~~vlvE~~i~G-~e~~v~v  231 (357)
T 4fu0_A          159 TFKRFNEEAAMKEIEANLTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEH------DTEVIVEETING-FEVGCAV  231 (357)
T ss_dssp             EEEGGGHHHHHHHHHHHCCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEE
T ss_pred             eecCCChHHHHHHHHHhcCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhcc------CCeEEEEEecCC-EEEEEEE
Confidence            4433   23455677789999999999999999999999999999998876542      478999999999 9999999


Q ss_pred             EEcCCCCEEEE--eeccchhhcccce
Q 021372          283 LADKYGNVVHF--GERDCSIQVIEIH  306 (313)
Q Consensus       283 ~~d~~G~vv~~--~~r~~s~~r~~~~  306 (313)
                      +.+..+.+..+  ....+.++++.++
T Consensus       232 l~~~~~~~~~v~~~~~~~~~~d~~~k  257 (357)
T 4fu0_A          232 LGIDELIVGRVDEIELSSGFFDYTEK  257 (357)
T ss_dssp             EESSSEEECCCEEEEECHHHHTSCSB
T ss_pred             EecCCceEEEEEEEEccccccccccc
Confidence            99865433222  2334556655544

>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A

Probab=99.94  E-value=3.7e-26  Score=209.44  Aligned_cols=187  Identities=19%  Similarity=0.206  Sum_probs=151.2

Q ss_pred             cccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           70 RQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        70 ~~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |++||+|+.+|.         ++..++++|++.|++|++++....            . +            ..    ..
T Consensus        12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~------------~-~------------~~----l~   62 (317)
T 4eg0_A           12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAER------------P-L------------SA----LK   62 (317)
T ss_dssp             GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS------------C-T------------TH----HH
T ss_pred             hcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCc------------h-H------------HH----hh
Confidence            567888888765         478999999999999999963211            0 0            01    13


Q ss_pred             hcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHH--
Q 021372          141 SRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA--  217 (313)
Q Consensus       141 ~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~--  217 (313)
                      ..++|++++. ++...|+..+..+++..|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++  
T Consensus        63 ~~~~D~v~~~~hg~~ge~~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~~~  140 (317)
T 4eg0_A           63 DEGFVRAFNALHGGYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFE--TVMRGDDYAARATD  140 (317)
T ss_dssp             HTTCCEEEECCCSGGGTSSHHHHHHHHHTCEESSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSCHHHHHHH
T ss_pred             hcCCCEEEEcCCCCCCchHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EEECchhHHHHHHH
Confidence            4679999987 45666888889999999999999999999999999999999999999999995  677766666666  


Q ss_pred             --HHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC-CCcEEEEEEEEcCCCCEEEEe
Q 021372          218 --DELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ-NPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       218 --~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~-G~~e~~v~v~~d~~G~vv~~~  294 (313)
                        ++++||+||||..|++|.||.++++.+|+.++++.+..      .+..+||||||+ | +|+++.++.|..+.++.+.
T Consensus       141 ~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~i~~G-~E~~v~vl~~~~~~~~~i~  213 (317)
T 4eg0_A          141 IVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAAT------HDKIVIVEKSIEGG-GEYTACIAGDLDLPLIKIV  213 (317)
T ss_dssp             HHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCSS-EEEEEEEETTCCCCCEEEE
T ss_pred             HHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------CCCeEEEEcCCCCC-cEEEEEEECCcccceEEEe
Confidence              78999999999999999999999999999999987543      247899999999 8 9999999988766666654

>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*

Probab=99.94  E-value=8.4e-26  Score=236.71  Aligned_cols=207  Identities=19%  Similarity=0.293  Sum_probs=164.2

Q ss_pred             cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      ++++|||+|+|+.           +.+++++|+++|+++++++.++.....+...+|..+ ++       ..+.+.+.++
T Consensus       558 ~~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~-~~-------p~~~e~v~~i  629 (1073)
T 1a9x_A          558 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLY-FE-------PVTLEDVLEI  629 (1073)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEE-CC-------CCSHHHHHHH
T ss_pred             cCcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEE-ec-------cchhhhhhhh
Confidence            4679999999884           457899999999999999888776665666777765 43       2568899999


Q ss_pred             HHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHH
Q 021372          139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLAD  218 (313)
Q Consensus       139 ~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~  218 (313)
                      ++.+++|+|++.++... ...++..+++.|++++|++++++..+.||..++++|+++|||+|++.  .+.+.+++.++++
T Consensus       630 ~~~e~~d~Vi~~~g~~~-~~~la~~Le~~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~GIp~P~~~--~~~s~eea~~~~~  706 (1073)
T 1a9x_A          630 VRIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANA--TVTAIEMAVEKAK  706 (1073)
T ss_dssp             HHHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHHHHHHHSHHHHHHHHHHHTCCCCCEE--ECCSHHHHHHHHH
T ss_pred             hhhcCcceEEeecCCch-HHHHHHHHHHCCCCeeCCCHHHHHHhhCHHHHHHHHHHcCcCCCCce--EECCHHHHHHHHH
Confidence            99999999998764211 13456778899999999999999999999999999999999999995  8899999999999


Q ss_pred             HhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       219 ~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      ++|||+||||..+.||+||.++++.+|+.++++.+....    .+.++|||+||+|.+|++|+++.|+. .++.
T Consensus       707 ~ig~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~----~~~~vlvEefI~g~~E~~V~~l~d~~-~v~~  775 (1073)
T 1a9x_A          707 EIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVS----NDAPVLLDHFLDDAVEVDVDAICDGE-MVLI  775 (1073)
T ss_dssp             HHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTCEEEEEEEEECSS-CEEE
T ss_pred             HcCCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhC----CCCcEEEEEccCCCcEEEEEEEEECC-eEEE
Confidence            999999999999999999999999999999998764321    34689999999994599999999865 4443

>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}

Probab=99.94  E-value=1.9e-25  Score=215.35  Aligned_cols=185  Identities=16%  Similarity=0.239  Sum_probs=154.6

Q ss_pred             hhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCccc--HHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          108 ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAEN--AVFVEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       108 ~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                      .++...+|+.+.+.+.+....+.+++.|+++++++++|+|+|.    +|+  ..+++.+++.|++  |++++++..+.||
T Consensus        67 ~p~~~~Ad~~~~~~~~~~~~~~~~i~~I~~~a~~~~id~Vip~----sE~~l~~~a~~~e~~Gi~--g~~~~ai~~~~DK  140 (474)
T 3vmm_A           67 LADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGADAITTN----NELFIAPMAKACERLGLR--GAGVQAAENARDK  140 (474)
T ss_dssp             GGGGCCCSCCSSCCSCCCCCHHHHHHHHHHHHHHTTCSEEEES----CGGGHHHHHHHHHHTTCC--CSCHHHHHHTTCH
T ss_pred             CcchhhcCeEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEC----CcccHHHHHHHHHHcCCC--CCCHHHHHHhhCH
Confidence            3457778888866555544555678999999999999999984    355  6788899999997  8999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh------
Q 021372          186 STARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA------  259 (313)
Q Consensus       186 ~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~------  259 (313)
                      ..++++|+++|||+|+++  .+.+.+++.++++++|||+|+||..|+||+|+.++++.+|+.++++.+......      
T Consensus       141 ~~~k~~l~~~GIpvp~~~--~v~s~ee~~~~~~~lg~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a  218 (474)
T 3vmm_A          141 NKMRDAFNKAGVKSIKNK--RVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKA  218 (474)
T ss_dssp             HHHHHHHHHTTSCCCCEE--EECSHHHHHHHHHHSCSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTT
T ss_pred             HHHHHHHHHcCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhcccccc
Confidence            999999999999999995  889999999999999999999999999999999999999999999988765432      


Q ss_pred             -cCCCCcEEEeeccCCCc-----------EEEEEE-EEcCCCCEEEEeeccchhh
Q 021372          260 -AFGNDGVYLEKYVQNPR-----------HIEFQV-LADKYGNVVHFGERDCSIQ  301 (313)
Q Consensus       260 -~~~~~~vlvEe~I~G~~-----------e~~v~v-~~d~~G~vv~~~~r~~s~~  301 (313)
                       .+ ++.+||||||+|.+           ++++.. +.|+++.++.++++.|+.+
T Consensus       219 ~~~-~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~v~i~~~~~~~~  272 (474)
T 3vmm_A          219 VTF-EAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFPIAIHDKTPQIG  272 (474)
T ss_dssp             CCC-SCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEEEEEEEECCCBT
T ss_pred             ccC-CCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEEEEEEeeccCCC
Confidence             12 37899999999943           388874 4555556677788888765

>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*

Probab=99.93  E-value=1.2e-26  Score=218.27  Aligned_cols=218  Identities=18%  Similarity=0.224  Sum_probs=163.2

Q ss_pred             ccccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc-----------------CceEEccC
Q 021372           69 CRQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-----------------DESVCIGE  122 (313)
Q Consensus        69 ~~~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a-----------------d~~~~v~~  122 (313)
                      |+++||+|+-+|.         +|..++++|++.||+|+.++.+.+.........                 ...+.+.+
T Consensus        20 m~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (386)
T 3e5n_A           20 MRKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLP   99 (386)
T ss_dssp             -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECT
T ss_pred             cCCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeecc
Confidence            3456776666554         278999999999999999987654211000000                 00111111


Q ss_pred             CCCCCCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          123 APSSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      ......+....   ......++|+|+|. +|...|+..+..+++..|++++|++.+++..+.||..++++|+++|||+|+
T Consensus       100 ~~~~~~~~~~~---~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~  176 (386)
T 3e5n_A          100 GAQQQQLRPIQ---PEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAP  176 (386)
T ss_dssp             TCSSSCEEECC-----CCCCCCSEEEEEECSHHHHSSHHHHHHHHTTCCBSSCCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred             Cccccceeccc---cccccCCCCEEEEcCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCCCC
Confidence            11110110000   00123579999998 688889888999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCHH----HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcE
Q 021372          202 GSDGLLQSTE----EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRH  277 (313)
Q Consensus       202 ~~~~~~~~~~----~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e  277 (313)
                      ++  .+.+.+    ++.++++++|||+||||..|++|.||.++++.+|+.++++.+..      .+..+||||||+| +|
T Consensus       177 ~~--~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~------~~~~vlVEe~I~G-~E  247 (386)
T 3e5n_A          177 FV--CFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVGVSQVRTADAFAAALALALA------YDHKVLVEAAVAG-RE  247 (386)
T ss_dssp             EE--EEEHHHHTTCCHHHHHHHHCSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTT------TCSEEEEEECCCS-EE
T ss_pred             EE--EEeCcccchhhHHHHHHhcCCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHh------CCCcEEEEcCCCC-eE
Confidence            95  666666    67778889999999999999999999999999999999987653      2478999999999 99


Q ss_pred             EEEEEEEcCCCCEEEEeeccc
Q 021372          278 IEFQVLADKYGNVVHFGERDC  298 (313)
Q Consensus       278 ~~v~v~~d~~G~vv~~~~r~~  298 (313)
                      ++|.++.++...++..++..+
T Consensus       248 ~~v~vl~~~~~~~~~~gei~~  268 (386)
T 3e5n_A          248 IECAVLGNAVPHASVCGEVVV  268 (386)
T ss_dssp             EEEEEECSSSCEEEEEEEECC
T ss_pred             EEEEEEeCCCceEEEeEEEEe
Confidence            999999987666666666554

>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*

Probab=99.93  E-value=1.7e-25  Score=209.03  Aligned_cols=213  Identities=17%  Similarity=0.225  Sum_probs=159.9

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc-----------------eEEccCCC
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-----------------SVCIGEAP  124 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~-----------------~~~v~~~~  124 (313)
                      ++||.|+-+|.         +|..++++|++.||+|+.++.+.+.........+.                 ...+.+..
T Consensus         3 ~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (364)
T 3i12_A            3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGK   82 (364)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEEECTTC
T ss_pred             ccEEEEEeccCCCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccceecccc
Confidence            45666666554         37899999999999999998665421110000000                 00011100


Q ss_pred             CCCCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCC
Q 021372          125 SSQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS  203 (313)
Q Consensus       125 ~~~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~  203 (313)
                      ........   .......++|+|+|. +|...|+..+..+++.+|++++|++.+++..+.||..++++|+++|||+|+++
T Consensus        83 ~~~~~~~~---~~~~~~~~~D~vf~~lhG~~gEdg~iq~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~  159 (364)
T 3i12_A           83 HQHQLINA---QNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFI  159 (364)
T ss_dssp             SSSCEEET---TTCCBCCCCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE
T ss_pred             cccceecc---ccccccCCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHHCHHHHHHHHHHCCCCCCCEE
Confidence            00000000   000013579999999 68889999999999999999999999999999999999999999999999995


Q ss_pred             cccCCCHH----HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEE
Q 021372          204 DGLLQSTE----EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE  279 (313)
Q Consensus       204 ~~~~~~~~----~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~  279 (313)
                        .+.+.+    ++.++++++|||+||||..|++|.||.++++.+|+.++++.+...      +..+||||||+| +|++
T Consensus       160 --~~~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~------~~~vlVEe~I~G-~E~~  230 (364)
T 3i12_A          160 --TLTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEF------DHKVVVEQGIKG-REIE  230 (364)
T ss_dssp             --EEETTTGGGCCHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEE
T ss_pred             --EEEccccchhhHHHHHHhcCCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhc------CCcEEEEcCcCC-eEEE
Confidence              666665    777788899999999999999999999999999999999887654      378999999999 9999


Q ss_pred             EEEEEcCCCCEEEEee
Q 021372          280 FQVLADKYGNVVHFGE  295 (313)
Q Consensus       280 v~v~~d~~G~vv~~~~  295 (313)
                      +.++.|+.+.+...++
T Consensus       231 v~vl~~~~~~~~~~~e  246 (364)
T 3i12_A          231 CAVLGNDNPQASTCGE  246 (364)
T ss_dssp             EEEEESSSCEEEEEEE
T ss_pred             EEEEeCCCceEeeeEE
Confidence            9999987644555554

>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2

Probab=99.93  E-value=1.9e-25  Score=211.95  Aligned_cols=193  Identities=13%  Similarity=0.129  Sum_probs=149.2

Q ss_pred             cccccEEEEEcCCHhHHHHHHHH-HHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTA-HEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al-~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++.++|||+|+|.....++.++ ++.| +|+++..+     +....+|+.  +          +.+.++++++++++|+
T Consensus        12 ~~~~~~vlviG~Ggr~~a~a~~~a~~~g-~v~~~~~n-----p~~~~~d~~--i----------d~~~l~~~~~~~~~d~   73 (412)
T 1vkz_A           12 HMKAVRVHILGSGGREHAIGWAFAKQGY-EVHFYPGN-----AGTKRDGTN--H----------PYEGEKTLKAIPEEDI   73 (412)
T ss_dssp             ----CEEEEEECSHHHHHHHHHHHHTTC-EEEEEECC-----TTGGGTSEE--C----------CCCTHHHHHTSCSSCE
T ss_pred             ccccCEEEEECCCHHHHHHHHHHHhCCC-CEEEECCC-----hhhhccccc--C----------CHHHHHHHHHHcCCCE
Confidence            34467999999997666656554 6688 88888432     223445543  2          2457899999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI  226 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv  226 (313)
                      |+++.    |+..++..++.++. ++||+++++..+.||..++++|+++|||+|++.  .+.+.+++.+++++++||+||
T Consensus        74 V~~~~----E~~~~a~~~~~l~~-~~g~~~~~~~~~~dK~~~k~~l~~~gip~p~~~--~~~~~~e~~~~~~~~g~Pvvv  146 (412)
T 1vkz_A           74 VIPGS----EEFLVEGVSNWRSN-VFGPVKEVARLEGSKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVI  146 (412)
T ss_dssp             ECCSS----GGGTCC-----CTT-BSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHTTSCSSEEE
T ss_pred             EEECC----cHHHHHHHHHHhhh-hhCCCHHHHHHhcCHHHHHHHHHHcCCCCCCEE--EECCHHHHHHHHHhcCCCEEE
Confidence            99854    44334456667777 789999999999999999999999999999984  889999999999999999999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC-CcEEEeeccCCCcEEEEEEEEcCC
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN-DGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~-~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      ||..|++|+||+++++.+|+.++++.+.... ..++. .++++||||+| +|++|.++.|++
T Consensus       147 Kp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~-~~~g~~~~vlvEe~i~G-~E~sv~~~~dg~  206 (412)
T 1vkz_A          147 KADGLARGKGVLILDSKEETIEKGSKLIIGE-LIKGVKGPVVIDEFLAG-NELSAMAVVNGR  206 (412)
T ss_dssp             EESSCCSSCCEEEESSHHHHHHHHHHHHHTS-SSTTCCSCEEEEECCCS-EEEEEEEEEETT
T ss_pred             EeCCCCCCCCEEEECCHHHHHHHHHHHHhhc-cccCCCCeEEEEECCcC-cEEEEEEEECCC
Confidence            9999999999999999999999998875421 01222 48999999998 999999999743

>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1

Probab=99.93  E-value=2.1e-25  Score=209.34  Aligned_cols=214  Identities=15%  Similarity=0.193  Sum_probs=160.4

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHH-HHcCCcEEEEecCCCcchhh-------------hhhc-CceEEccCCCCC
Q 021372           71 QEKILVANRGE---------IAVRVIRTA-HEMGIPCVAVYSTIDKDALH-------------VKLA-DESVCIGEAPSS  126 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al-~~~G~~vi~v~~~~~~~~~~-------------~~~a-d~~~~v~~~~~~  126 (313)
                      ++||+|+++|.         +|..++++| ++.||+|+.++.+++.....             ..+. +....+..    
T Consensus         3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   78 (377)
T 1ehi_A            3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDA----   78 (377)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCT----
T ss_pred             CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccccccccc----
Confidence            56788888774         378899999 99999999998765431110             0011 00000000    


Q ss_pred             CCcCCHHHHHHHHHhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc
Q 021372          127 QSYLLIPNVLSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG  205 (313)
Q Consensus       127 ~~~~~~~~l~~~~~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~  205 (313)
                      ..+.....+..  ..+++|+|+|.. |...|+..+..+++..|++++|++.+++..+.||..++++|+++|||+|+++  
T Consensus        79 ~~~~~~~~~~~--~~~~~D~v~~~~~g~~gedg~~~~lle~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--  154 (377)
T 1ehi_A           79 SDPLARIHALK--SAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAVSFDKALTKELLTVNGIRNTKYI--  154 (377)
T ss_dssp             TCTTCTTGGGG--TTCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHTTTCCCCCEE--
T ss_pred             ccccCcchhhc--cccCCCEEEEecCCCCCcCHHHHHHHHHcCCCEeCcCHHHHHHHcCHHHHHHHHHHcCCCCCCEE--
Confidence            00000001111  135799999986 6777887888899999999999999999999999999999999999999995  


Q ss_pred             cCCCHHH----HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEE
Q 021372          206 LLQSTEE----AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQ  281 (313)
Q Consensus       206 ~~~~~~~----~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~  281 (313)
                      .+.+.++    +.++++++|||+||||..|++|.||.++++.+|+.++++.+...      +..+||||||+|.+|+++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G~~E~~v~  228 (377)
T 1ehi_A          155 VVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVG  228 (377)
T ss_dssp             EECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCCSCEEEEE
T ss_pred             EEeccccchHHHHHHHHhcCCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhc------CCcEEEEcCCCCCceEEEE
Confidence            5665543    56667789999999999999999999999999999999876432      4689999999997899999


Q ss_pred             EEEcCCCCEEEEeeccc
Q 021372          282 VLADKYGNVVHFGERDC  298 (313)
Q Consensus       282 v~~d~~G~vv~~~~r~~  298 (313)
                      ++.|+++.++..++..+
T Consensus       229 vl~~~~~~~~~~~ei~~  245 (377)
T 1ehi_A          229 VIGNDQPLVSEIGAHTV  245 (377)
T ss_dssp             EEESSSCEEEEEEEEEC
T ss_pred             EEcCCCcEEEeeEEEEe
Confidence            99987656666665543

>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*

Probab=99.93  E-value=1.1e-25  Score=210.24  Aligned_cols=213  Identities=19%  Similarity=0.261  Sum_probs=157.7

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhh-h---cC--ceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-L---AD--ESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~---ad--~~~~v~~~~~~~~~~~~~~l  135 (313)
                      ++||+|+++|.         +|..++++|++.|++|++++.+++....... .   .+  ..+.+. .+....+   ..+
T Consensus         3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~   78 (364)
T 2i87_A            3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLE-NGEALEI---SQL   78 (364)
T ss_dssp             CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGG-GSEEECS---SGG
T ss_pred             CcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccc-ccccccc---ccc
Confidence            56788888664         4788999999999999999876543211000 0   00  001010 0000000   011


Q ss_pred             HHH-HHhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH--
Q 021372          136 LSA-AISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE--  211 (313)
Q Consensus       136 ~~~-~~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~--  211 (313)
                      +.. .+...+|+|+|.. |...|+..+...++..|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.+  
T Consensus        79 ~~~~~~~~~~D~v~~~~~g~~~ed~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~~  156 (364)
T 2i87_A           79 LKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAASSMDKLVMKQLFEHRGLPQLPYI--SFLRSEYE  156 (364)
T ss_dssp             GGBCTTSSBCSEEEEECCCSSSCTTHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHHTCCCCCEE--EEEHHHHH
T ss_pred             ccccccccCCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEechhhc
Confidence            110 0345799999985 6777887888889999999999999999999999999999999999999995  565554  


Q ss_pred             -----HHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          212 -----EAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       212 -----~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                           ++.+++++++||+||||..|++|.||.++++.+|+.++++.+..      .+..+||||||+| +|++|.++.++
T Consensus       157 ~~~~~~~~~~~~~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~G-~E~~v~vl~~~  229 (364)
T 2i87_A          157 KYEHNILKLVNDKLNYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQ------FDRKLVIEQGVNA-REIEVAVLGND  229 (364)
T ss_dssp             HHHHHHHHHHHHHCCSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHT------TCSEEEEEECCCC-EEEEEEEEESS
T ss_pred             ccchhHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCccC-eEEEEEEEcCC
Confidence                 45666778999999999999999999999999999999887653      2478999999999 99999999986


Q ss_pred             CCCEEEEeec
Q 021372          287 YGNVVHFGER  296 (313)
Q Consensus       287 ~G~vv~~~~r  296 (313)
                      ++.++..++.
T Consensus       230 ~~~~~~~~e~  239 (364)
T 2i87_A          230 YPEATWPGEV  239 (364)
T ss_dssp             SCEECCCEEE
T ss_pred             CcEEeeeEEE
Confidence            5444444443

>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*

Probab=99.92  E-value=4e-25  Score=205.41  Aligned_cols=176  Identities=16%  Similarity=0.218  Sum_probs=146.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |++|+|+|+|.+|++++.+++++|++|  ++.+++.+.        .+ +          .   +       ++|+|++.
T Consensus         1 Mk~igilGgGqlg~m~~~aa~~lG~~v--~~~~~~a~~--------~~-~----------~---l-------~~d~it~e   49 (355)
T 3eth_A            1 MKQVCVLGNGQLGRMLRQAGEPLGIAV--WPVGLDAEP--------AA-V----------P---F-------QQSVITAE   49 (355)
T ss_dssp             CCEEEEESCSHHHHHHHHHHGGGTCEE--EEECTTCCG--------GG-C----------C---C-------TTSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEE--ECCCCCCCc--------eE-E----------c---c-------cCCEEEEC
Confidence            467999999999999999999999999  444544221        11 1          1   1       79999998


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      ++....  ..++.+++.|  .++|+++++..+.||..+|++|+++|||+|++.  .+.+.+++.++++++|||+||||..
T Consensus        50 ~e~v~~--~~l~~l~~~~--~v~p~~~a~~~~~DK~~~k~~l~~~GIptp~~~--~v~~~~e~~~~~~~~G~P~VvKp~~  123 (355)
T 3eth_A           50 IERWPE--TALTRQLARH--PAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRT  123 (355)
T ss_dssp             CSCCCC--CHHHHHHHTC--TTBTTTTHHHHHHSHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCSEEEEEESS
T ss_pred             cCCcCH--HHHHHHHhcC--CcCCCHHHHHHhcCHHHHHHHHHHCccCCCCEE--EECCHHHHHHHHHHcCCCEEEEecC
Confidence            876654  3556677777  467999999999999999999999999999995  8899999999999999999999998


Q ss_pred             C-CCCccEEEeCC--HHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          231 G-GGGRGMRLAKE--PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       231 g-~gg~GV~~v~~--~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      + ++|+|++++++  .+|+.+++          ++  .+|+|+||++++|+++.+++|.+|+++++..
T Consensus       124 ~G~~GkGv~~v~~~~~~el~~a~----------~~--~vivEe~I~~~~Eisv~v~~~~~G~~~~~p~  179 (355)
T 3eth_A          124 GGYDGRGQWRLRANETEQLPAEC----------YG--ECIVEQGINFSGEVSLVGARGFDGSTVFYPL  179 (355)
T ss_dssp             SCCTTTTEEEEETTCGGGSCGGG----------TT--TEEEEECCCCSEEEEEEEEECTTSCEEECCC
T ss_pred             CCCCCCeEEEEcCCCHHHHHHHh----------hC--CEEEEEccCCCcEEEEEEEEcCCCCEEEECC
Confidence            5 78999999999  99987743          12  6999999997699999999999999877643

>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*

Probab=99.92  E-value=1.2e-24  Score=197.65  Aligned_cols=175  Identities=23%  Similarity=0.293  Sum_probs=143.4

Q ss_pred             cccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           70 RQEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        70 ~~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |+++|+|+++|.         .+..++++|+++|++|++++.+.. ..  ..                          +.
T Consensus         1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~-~~--~~--------------------------~~   51 (306)
T 1iow_A            1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEV-DV--TQ--------------------------LK   51 (306)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTS-CG--GG--------------------------TT
T ss_pred             CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCch-HH--HH--------------------------hh
Confidence            467899999887         678999999999999999965421 10  00                          01


Q ss_pred             hcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHH----
Q 021372          141 SRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK----  215 (313)
Q Consensus       141 ~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~----  215 (313)
                      ...+|+|++.. +...|+..+...++..|++++|++++++..+.||..++++|+++|||+|+++  .+.+. ++.+    
T Consensus        52 ~~~~d~v~~~~~~~~~e~~~~~~~~e~~g~~~~g~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~-~~~~~~~~  128 (306)
T 1iow_A           52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWV--ALTRA-EFEKGLSD  128 (306)
T ss_dssp             TTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCBCCEE--EEEHH-HHHHCCCT
T ss_pred             ccCCCEEEEcCCCCCCcchHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCCCCCCeE--EEchh-hhhccchh
Confidence            24578888763 3334665667788889999999999999999999999999999999999995  66666 6655    


Q ss_pred             ----HHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEE
Q 021372          216 ----LADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVL  283 (313)
Q Consensus       216 ----~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~  283 (313)
                          ++++++||+|+||..|++|+||+++++.+|+.++++.+..      .+.++++||||+| +|+++.++
T Consensus       129 ~~~~~~~~~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~~------~~~~~lvee~i~g-~e~~v~~~  193 (306)
T 1iow_A          129 KQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ------HDEEVLIEKWLSG-PEFTVAIL  193 (306)
T ss_dssp             HHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT------TCSEEEEEECCCC-CEEEEEEE
T ss_pred             hhhhHHhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------hCCCEEEEeCcCC-EEEEEEEE
Confidence                6778999999999999999999999999999998887642      1478999999999 99999999

>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}

Probab=99.92  E-value=1.1e-24  Score=204.61  Aligned_cols=206  Identities=17%  Similarity=0.232  Sum_probs=148.0

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceE---EccCCCCCC--CcCCHHHH
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESV---CIGEAPSSQ--SYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~---~v~~~~~~~--~~~~~~~l  135 (313)
                      ++||+|+-+|.         +|..++++|++.||+|+.++.+.+.... .....+...   .+.......  .......+
T Consensus        37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (383)
T 3k3p_A           37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDI  116 (383)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGG
T ss_pred             CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccccccccc
Confidence            45677777655         3889999999999999999866432110 000000000   000000000  00000001


Q ss_pred             HHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCC-CCCCCCCcccCCCH---
Q 021372          136 LSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAG-VPTVPGSDGLLQST---  210 (313)
Q Consensus       136 ~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~G-ip~p~~~~~~~~~~---  210 (313)
                         .  .++|+|+|. +|...|+..+..+++..|++++|++..++..+.||..++++|+++| ||+|+++  .+.+.   
T Consensus       117 ---~--~~~D~vf~~lhG~~GEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~G~Ipvp~~~--~~~~~~~~  189 (383)
T 3k3p_A          117 ---Y--EEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMDKITTNQVLESATTIPQVAYV--ALIEGEPL  189 (383)
T ss_dssp             ---C--CTTCEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHHHHCHHHHHHHHHHHCCCCBCCEE--EEETTSCH
T ss_pred             ---c--cCCCEEEEcCCCCCcchHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHhCCCcCCCCEE--EEeCccch
Confidence               0  369999997 4777799899999999999999999999999999999999999999 9999995  55443   


Q ss_pred             -HHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372          211 -EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN  289 (313)
Q Consensus       211 -~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~  289 (313)
                       +++.+++++++||+||||..|++|.||.++++.+|+.++++.+...      +..+||||||+| +|++|.++.|+...
T Consensus       190 ~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~------~~~vlVEe~I~G-~E~~v~vl~d~~~~  262 (383)
T 3k3p_A          190 ESKLAEVEEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKY------DSRVLIEQGVDA-REIEVGILGNTDVK  262 (383)
T ss_dssp             HHHHHHHHHHCCSSEEEEECC------CEEESSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEEESSSCE
T ss_pred             hHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhC------CCeEEEEcCCCC-eEEEEEEEeCCCee
Confidence             4667778899999999999999999999999999999999887654      378999999999 99999999885433


Q ss_pred             E
Q 021372          290 V  290 (313)
Q Consensus       290 v  290 (313)
                      +
T Consensus       263 ~  263 (383)
T 3k3p_A          263 T  263 (383)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}

Probab=99.92  E-value=2.2e-25  Score=208.78  Aligned_cols=210  Identities=18%  Similarity=0.280  Sum_probs=150.4

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchh-------hhhhcCce-----------EEccC
Q 021372           70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDAL-------HVKLADES-----------VCIGE  122 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~-------~~~~ad~~-----------~~v~~  122 (313)
                      +++||.|+-+|.+         |..++++|.+.+|+|+.++.+.+....       .....+..           +.+.+
T Consensus         9 ~~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~~~~~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (373)
T 3lwb_A            9 RRVRVAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQVKSGSGTELALPA   88 (373)
T ss_dssp             TCEEEEEEEEC-----CHHHHHHHHHHHHSCTTTEEEEEEEECTTCCEEEECCC--------------------------
T ss_pred             CCcEEEEEecCCCCChhhHHHHHHHHHHHhhhcCceEEEEEecCCCCeEecCchhhhhhcccccccccccccccceEeec
Confidence            3567777776663         788999999999999998766431100       00000000           00000


Q ss_pred             CCCCCCcCCHHHHHHHHHhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          123 APSSQSYLLIPNVLSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       123 ~~~~~~~~~~~~l~~~~~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      .+........+.-.......++|+|+|.. |...|+..+..+++.+|++++|++.+++..+.||..++++|+++|||+|+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~D~vfp~lhG~~gEdg~iq~lle~~gip~vG~~~~a~~~~~DK~~~k~~l~~~GIp~p~  168 (373)
T 3lwb_A           89 DPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGA  168 (373)
T ss_dssp             --------CCCCTTHHHHHHTCSEEEECCEETTEECCHHHHHHHHHTCCBSSSCHHHHHHHHBHHHHHHHHHHTTCCBCC
T ss_pred             cccccceeeccccccccccCCccEEEECCCCCCCccHHHHHHHHHcCCCccCCcHHHHHHHcCHHHHHHHHHHcCcCCCC
Confidence            00000000000000001123699999985 78889989999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCHHH--HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEE
Q 021372          202 GSDGLLQSTEE--AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE  279 (313)
Q Consensus       202 ~~~~~~~~~~~--~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~  279 (313)
                      ++  .+.+.++  ..+..++++||+||||..|++|.||.++++.+||.++++.+...      +..+||||||+| +|++
T Consensus       169 ~~--~~~~~~~~~~~~~~~~lg~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~~  239 (373)
T 3lwb_A          169 YA--VLRPPRSTLHRQECERLGLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRH------DPKVIVEAAISG-RELE  239 (373)
T ss_dssp             EE--EECTTCCCCCHHHHHHHCSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTT------CSSEEEEECCEE-EEEE
T ss_pred             EE--EEECcccchhHHHHHhcCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEeCCCCC-eEEE
Confidence            95  5555443  13346789999999999999999999999999999999887642      478999999999 9999


Q ss_pred             EEEEEcCCC
Q 021372          280 FQVLADKYG  288 (313)
Q Consensus       280 v~v~~d~~G  288 (313)
                      |.++.+..+
T Consensus       240 v~vl~~~~~  248 (373)
T 3lwb_A          240 CGVLEMPDG  248 (373)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEECCCC
Confidence            999999766

>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*

Probab=99.91  E-value=1.9e-24  Score=196.73  Aligned_cols=176  Identities=21%  Similarity=0.302  Sum_probs=140.0

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      .+||+|+.+|.         ++..++++|++.|++|+.++.+.....                             +.+.
T Consensus         3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~-----------------------------~~~~   53 (307)
T 3r5x_A            3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDL-----------------------------IEKA   53 (307)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGH-----------------------------HHHT
T ss_pred             CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhH-----------------------------HHhc
Confidence            35788887662         488999999999999999865321100                             1112


Q ss_pred             cCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHH-HHHH
Q 021372          142 RGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK-LADE  219 (313)
Q Consensus       142 ~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~~  219 (313)
                      .++|+|++.. +...++..+...++..|++++|++++++..+.||..++++|+++|||+|+++  .+.+.+++.+ ++++
T Consensus        54 ~~~D~v~~~~~~~~ge~~~~~~~le~~gi~~~g~~~~~~~~~~dK~~~~~~l~~~Gip~p~~~--~~~~~~~~~~~~~~~  131 (307)
T 3r5x_A           54 KDIDFALLALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWI--ELTKMEDLNFDELDK  131 (307)
T ss_dssp             TTCSEEEECCCSHHHHSSHHHHHHHHHTCCBSSSCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEESSSCCCHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEeChhhhhHHHHHh
Confidence            5799999874 3333666777889999999999999999999999999999999999999995  6666555543 6778


Q ss_pred             hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEE
Q 021372          220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLA  284 (313)
Q Consensus       220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~  284 (313)
                      ++||+|+||..|++|+||.++++.+++.++++.+...      +.++|+||||+| +|+++.++.
T Consensus       132 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~------~~~~lvee~i~G-~e~~v~v~~  189 (307)
T 3r5x_A          132 LGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW------DSEVVIEKYIKG-EEITCSIFD  189 (307)
T ss_dssp             HCSSEEEEECC----CCCEEECSHHHHHHHHHHHHHH------CSEEEEEECCCS-EEEEEEEET
T ss_pred             cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhc------CCCEEEECCcCC-EEEEEEEEC
Confidence            9999999999999999999999999999999887654      379999999999 999999963

>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*

Probab=99.91  E-value=1.4e-24  Score=201.02  Aligned_cols=202  Identities=17%  Similarity=0.193  Sum_probs=151.6

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhh-----hhc--C-ceEEccCCCCCCCcCCHH
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHV-----KLA--D-ESVCIGEAPSSQSYLLIP  133 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-----~~a--d-~~~~v~~~~~~~~~~~~~  133 (313)
                      ++||+|+++|.         +|..++++|++.||+|++++.+++......     .+.  + ..+++.+.+....     
T Consensus         3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (343)
T 1e4e_A            3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHG-----   77 (343)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCE-----
T ss_pred             CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceeccccccccc-----
Confidence            56788888664         378899999999999999987654321100     011  0 1122222111011     


Q ss_pred             HH-HHH--HHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCC
Q 021372          134 NV-LSA--AISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQS  209 (313)
Q Consensus       134 ~l-~~~--~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~  209 (313)
                      .+ ...  ....++|+|+|. +|...|+..+...++..|++++|++.+++..+.||..++++|+++|||+|+++  .+.+
T Consensus        78 ~~~~~~~~~~~~~~D~v~~~~~g~~ged~~~~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~  155 (343)
T 1e4e_A           78 LLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW--VINK  155 (343)
T ss_dssp             EEEEETTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EECT
T ss_pred             ceeecccccccccCCEEEEeCCCCCCcCHHHHHHHHHcCCCccCCCHHHHHHHhCHHHHHHHHHHCCCCcCCEE--EEec
Confidence            00 000  123579999998 45666777788899999999999999999999999999999999999999995  5665


Q ss_pred             HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCC
Q 021372          210 TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG  288 (313)
Q Consensus       210 ~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G  288 (313)
                      .+++.  .++++||+||||..|++|.||.++++.+|+.++++.+..      .+.++||||||+| +|+++.++.+..+
T Consensus       156 ~~~~~--~~~~~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~------~~~~~lvEe~I~G-~E~~v~vl~~~~~  225 (343)
T 1e4e_A          156 DDRPV--AATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ------YDSKILIEQAVSG-CEVGCAVLGNSAA  225 (343)
T ss_dssp             TCCCC--GGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTT------TCSSEEEEECCCS-EEEEEEEEEETTC
T ss_pred             hhhhh--hhccCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHh------cCCcEEEEeCcCC-eEEEEEEEeCCCC
Confidence            55432  267899999999999999999999999999999887643      2478999999999 9999999998654

>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}

Probab=99.91  E-value=2.7e-24  Score=201.20  Aligned_cols=205  Identities=17%  Similarity=0.225  Sum_probs=148.1

Q ss_pred             ccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhh----h---------h-hc--CceEEccCCCC
Q 021372           71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALH----V---------K-LA--DESVCIGEAPS  125 (313)
Q Consensus        71 ~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~----~---------~-~a--d~~~~v~~~~~  125 (313)
                      ++||+|+-+|.+         |..++++|.+.||+|+.++.+.+.....    .         . ..  +..+.+.+...
T Consensus         4 ~~~v~vl~GG~S~E~evSl~Sa~~v~~~l~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   83 (372)
T 3tqt_A            4 KLHISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDHLVKEGSARPITIAFGDA   83 (372)
T ss_dssp             SEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECCHHHHHHSCHHHHHHHTCSEEEEECTTCS
T ss_pred             CCEEEEEeccCCCccHhHHHHHHHHHHHHhhcCceEEEEEECCCCCEEeccchhhhhccccccccccccccceeeccccc
Confidence            346666665542         8899999999999999998765421100    0         0 00  01111111000


Q ss_pred             CCCcCCHHHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc
Q 021372          126 SQSYLLIPNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD  204 (313)
Q Consensus       126 ~~~~~~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~  204 (313)
                      ...+....   ..-...++|+|+|. +|...|+..+..+++.+|++++|++..++..+.||..++++|+++|||+|+++ 
T Consensus        84 ~~~~~~~~---~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~gipy~G~~~~a~~~~~DK~~~k~~l~~~GIp~p~~~-  159 (372)
T 3tqt_A           84 AKPWQSLN---GDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLPYVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWH-  159 (372)
T ss_dssp             SCCEEEC-------CEECCSEEEECCCSTTTTSSHHHHHHHHTTCCBSSCCHHHHHHHHSHHHHHHHHHHTTCCBCCCE-
T ss_pred             ccceeecc---ccccccCCCEEEEcCCCCCCcCHHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHCCcCCCCEE-
Confidence            00000000   00001579999998 47888998999999999999999999999999999999999999999999995 


Q ss_pred             ccCCCHHH----HHHHHHHhCCc-EEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEE
Q 021372          205 GLLQSTEE----AVKLADELGFP-VMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE  279 (313)
Q Consensus       205 ~~~~~~~~----~~~~~~~lg~P-~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~  279 (313)
                       .+.+.++    +.++.+++||| +||||..|++|.||.++++.+|+.++++.+...      +..+||||||+| +|++
T Consensus       160 -~~~~~~~~~~~~~~~~~~lg~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~------~~~vlVEe~I~G-~E~~  231 (372)
T 3tqt_A          160 -TLSPRDATEGVYQRLLDRWGTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRY------DDRLMVEPRIRG-REIE  231 (372)
T ss_dssp             -EECTTSCCTTHHHHHHHHC---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTT------CSCEEEEECCCS-EEEE
T ss_pred             -EEechhhhhhHHHHHHHhcCCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc------CCCEEEECCCCC-EEEE
Confidence             5555442    45677889999 999999999999999999999999998876432      478999999999 9999


Q ss_pred             EEEEEcCC
Q 021372          280 FQVLADKY  287 (313)
Q Consensus       280 v~v~~d~~  287 (313)
                      |.++.++.
T Consensus       232 v~vl~~~~  239 (372)
T 3tqt_A          232 CAVLGNGA  239 (372)
T ss_dssp             EEEEESSS
T ss_pred             EEEEeCCC
Confidence            99999863

>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}

Probab=99.91  E-value=1.3e-24  Score=201.62  Aligned_cols=204  Identities=18%  Similarity=0.188  Sum_probs=149.9

Q ss_pred             ccEEEEEcCCH---------hHHHHHHHHHHcCCcEEEEecCCCcchhhh-----hhcC-c--eEEccCCCCCCCcCCHH
Q 021372           71 QEKILVANRGE---------IAVRVIRTAHEMGIPCVAVYSTIDKDALHV-----KLAD-E--SVCIGEAPSSQSYLLIP  133 (313)
Q Consensus        71 ~~~ILIig~g~---------~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-----~~ad-~--~~~v~~~~~~~~~~~~~  133 (313)
                      ++||+|+.+|.         +|..++++|++.||+|+.++.+.+......     .+.. .  .-.+.+...........
T Consensus         3 ~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (346)
T 3se7_A            3 HMKIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLE   82 (346)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEE
T ss_pred             CCEEEEEeeecCCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecc
Confidence            34566666544         389999999999999999987654211000     0000 0  00000000000000000


Q ss_pred             HHHHHHHhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHH
Q 021372          134 NVLSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEE  212 (313)
Q Consensus       134 ~l~~~~~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~  212 (313)
                      .  ...++.++|+|+|.. |...|+..+..+++.+|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.+ 
T Consensus        83 ~--~~~~~~~~D~v~~~lhG~~gedg~iq~~le~~gip~~g~~~~a~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~-  157 (346)
T 3se7_A           83 Q--GKYETIRLDLVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQSSALCMDKSLTYLVARSAGIATPNFW--TVTADE-  157 (346)
T ss_dssp             T--TEEEEEECSEEEECCCSTTTTSSHHHHHHHHHCCCBSSCCHHHHHHHHSHHHHHHHHHHTTCBCCCEE--EEETTS-
T ss_pred             c--ccccccCCCEEEEccCCCCCCChHHHHHHHHcCCCeeCcCHHHHHHHhCHHHHHHHHHHcCcCcCCEE--EEcCcH-
Confidence            0  002245799999985 7888988899999999999999999999999999999999999999999995  555544 


Q ss_pred             HHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCC
Q 021372          213 AVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       213 ~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                       ..+.++++||+||||..|++|.||.++++.+|+.++++.+...      +.++||||||+| +|++|.++.+..
T Consensus       158 -~~~~~~lg~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~------~~~vlvEe~I~G-~E~~v~vl~~~~  224 (346)
T 3se7_A          158 -KIPTDQLTYPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREY------DSKVLIEEAVIG-TEIGCAVMGNGP  224 (346)
T ss_dssp             -CCCTTTCCSSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTT------CSEEEEEECCCS-EEEEEEEEEETT
T ss_pred             -HHHHHhcCCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhC------CCcEEEEeCcCC-EEEEEEEEecCC
Confidence             3345678999999999999999999999999999999876532      478999999999 999999999854

>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*

Probab=99.90  E-value=9.5e-24  Score=193.97  Aligned_cols=204  Identities=20%  Similarity=0.256  Sum_probs=150.7

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhh-----hhhcCceEEccCCCCCCCcCCHHHH
Q 021372           70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALH-----VKLADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~~~ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      |++||+|+.+|.+         |..++++|++   +|+.++.+.+.....     ..+.+....+...+.   ...   +
T Consensus         2 ~~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~   72 (322)
T 2fb9_A            2 EFMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF---PTDLAVIAQDGRWLLGEKALTALEAKAAPEGEHPF---PPP---L   72 (322)
T ss_dssp             CCCCEEEEEECSSTTHHHHHHHHHHHHHHCSS---CEEEEEECTTSCEECHHHHHHHTTSSCCCCCCBCS---SCC---C
T ss_pred             CCcEEEEEeCCCchhHHHHHHHHHHHHHHhcc---CeEEEEEcCCCCEEecccchhhhccccccceeccc---ccc---c
Confidence            4567888886653         6788888877   777776444321100     112221100100000   000   1


Q ss_pred             HHHHHhcCCCEEeecc-CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHH
Q 021372          136 LSAAISRGCTMLHPGY-GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAV  214 (313)
Q Consensus       136 ~~~~~~~~id~vip~~-g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~  214 (313)
                          ..+++|+|+|.. |...|+..+...++..|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.++  
T Consensus        73 ----~~~~~D~v~~~~hg~~gedg~i~~~le~~gip~~g~~~~~~~~~~dK~~~k~~l~~~Gip~p~~~--~~~~~~~--  144 (322)
T 2fb9_A           73 ----SWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWV--AVRKGEP--  144 (322)
T ss_dssp             ----CCTTCSEEEEECCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHHHCHHHHHHHHHHTTCCCCCEE--EEETTSC--
T ss_pred             ----cccCCCEEEEeCCCCCCccHHHHHHHHHcCCCeeCcCHHHHHHHcCHHHHHHHHHHCCCCCCCEE--EEECchh--
Confidence                246799999985 7777888888999999999999999999999999999999999999999995  5555443  


Q ss_pred             HHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEe
Q 021372          215 KLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       215 ~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~  294 (313)
                      +.. +++||+||||..|++|.||.++++.+|+.++++.+..      .+..+||||||+|.+|+++.++.+++++++..+
T Consensus       145 ~~~-~~g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~------~~~~vlvEe~I~G~~E~~v~vl~~~~~~~~~~~  217 (322)
T 2fb9_A          145 PVV-PFDPPFFVKPANTGSSVGISRVERFQDLEAALALAFR------YDEKAVVEKALSPVRELEVGVLGNVFGEASPVG  217 (322)
T ss_dssp             CCC-CSCSCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTT------TCSEEEEEECCSSCEEEEEEEESSSSCEEEEEE
T ss_pred             hhh-ccCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh------cCCeEEEEeCCCCCeeEEEEEEeCCCceEeeeE
Confidence            122 6899999999999999999999999999999887643      247899999999978999999988665566665


Q ss_pred             ecc
Q 021372          295 ERD  297 (313)
Q Consensus       295 ~r~  297 (313)
                      +..
T Consensus       218 ei~  220 (322)
T 2fb9_A          218 EVR  220 (322)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}

Probab=99.88  E-value=9e-23  Score=190.66  Aligned_cols=140  Identities=19%  Similarity=0.264  Sum_probs=118.1

Q ss_pred             CCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHH--HHHHHHHH
Q 021372          143 GCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTE--EAVKLADE  219 (313)
Q Consensus       143 ~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~--~~~~~~~~  219 (313)
                      ++|+|+|. +|...|+..+...++..|++++|++.+++..+.||..++++|+++|||+|+++  .+.+.+  ++.+ +++
T Consensus       107 ~~D~v~~~lhg~~gedg~i~~~le~~gip~~G~~~~a~~~~~DK~~~k~~l~~~Gip~p~~~--~~~~~~~~~~~~-~~~  183 (367)
T 2pvp_A          107 ELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGIKTLDYV--LLNEKNRANALD-LMN  183 (367)
T ss_dssp             ECCSEEECCCSTTTTSSHHHHHHHHTTCCEESCCHHHHHHHHSHHHHHHHHHHHTCBCCCCE--EECTTTGGGHHH-HCC
T ss_pred             CCCEEEEcCCCCCccHHHHHHHHHHcCCCccCCCHHHHHHHcCHHHHHHHHHHCCcCCCCEE--EEeCCchHHHHH-Hhc
Confidence            69999997 46677888888999999999999999999999999999999999999999995  566555  5555 677


Q ss_pred             hCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEE-EEEEEcCCCCEEEE
Q 021372          220 LGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIE-FQVLADKYGNVVHF  293 (313)
Q Consensus       220 lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~-v~v~~d~~G~vv~~  293 (313)
                      +|||+||||..|++|.||.++++.+||.++++.+...      +.++||||||+|.+|++ +.+..  +|+++..
T Consensus       184 lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~------~~~vlVEe~I~G~~E~svi~v~v--~g~~~~~  250 (367)
T 2pvp_A          184 FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEY------SKEVLIEPFIQGVKEYNLAGCKI--KKDFCFS  250 (367)
T ss_dssp             SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTT------CSCEEEEECCTTCEEEEEEEEEE--TTEEEEE
T ss_pred             cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhc------CCcEEEEeCCCCCceeeEEEEEE--CCEEEEE
Confidence            8999999999999999999999999999998876432      47899999999978966 44444  4554443

>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*

Probab=99.86  E-value=7.6e-21  Score=174.51  Aligned_cols=185  Identities=17%  Similarity=0.233  Sum_probs=132.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcc-hhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+++|+|+|+| .++.++++++++|+++++++.+.+.. .....++++.+..+      .+.+ +.+   +  ..+|+|+
T Consensus         1 m~m~Ililg~g-~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d-~~l---~--~~~d~i~   67 (334)
T 2r85_A            1 MKVRIATYASH-SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEE------KYPE-EEL---L--NLNAVVV   67 (334)
T ss_dssp             CCSEEEEESST-THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECS------SCCH-HHH---H--HTTEEEC
T ss_pred             CceEEEEECCh-hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecC------CcCh-HHh---c--ccCCEEE
Confidence            35689999999 89999999999999999997554322 11344566666442      0111 222   2  2358887


Q ss_pred             eccCcCcccH--HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEE
Q 021372          149 PGYGFLAENA--VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMI  226 (313)
Q Consensus       149 p~~g~~~e~~--~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~Vv  226 (313)
                      |..    +..  ...+.++..|++++ ++++++..+.||..++++|+++|||+|++    +.+.+       +++||+|+
T Consensus        68 ~~~----e~~~~~~~~~le~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gip~p~~----~~~~~-------~l~~P~vv  131 (334)
T 2r85_A           68 PTG----SFVAHLGIELVENMKVPYF-GNKRVLRWESDRNLERKWLKKAGIRVPEV----YEDPD-------DIEKPVIV  131 (334)
T ss_dssp             CCT----THHHHHCHHHHHTCCSCBB-SCTTHHHHHHSHHHHHHHHHHTTCCCCCB----CSCGG-------GCCSCEEE
T ss_pred             ECc----chhhhhHHHHHHHcCCCcc-CCHHHHHHHHhHHHHHHHHHHcCCCCCCc----cCChH-------HcCCCEEE
Confidence            653    322  22345678899977 56799999999999999999999999997    24443       35799999


Q ss_pred             eeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcC-CCCcEEEeeccCCCcEEEEEEEEcC
Q 021372          227 KATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       227 KP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~-~~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      ||..|++|+||+++++.+|+..+++.+....  .+ ...++|+||||+| .|+++.++.+.
T Consensus       132 KP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~--~~~~~~~~lvee~i~G-~e~~~~~~~~~  189 (334)
T 2r85_A          132 KPHGAKGGKGYFLAKDPEDFWRKAEKFLGIK--RKEDLKNIQIQEYVLG-VPVYPHYFYSK  189 (334)
T ss_dssp             EECC----TTCEEESSHHHHHHHHHHHHCCC--SGGGCCSEEEEECCCC-EEEEEEEEEET
T ss_pred             EeCCCCCCCCEEEECCHHHHHHHHHHHHhhc--ccCCCCcEEEEeccCC-ceeEEEEeecC
Confidence            9999999999999999999999888764210  00 1268999999999 89987777663

>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*

Probab=99.86  E-value=1.6e-21  Score=174.40  Aligned_cols=179  Identities=21%  Similarity=0.328  Sum_probs=134.4

Q ss_pred             EEEEcC--CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC-EEeec
Q 021372           74 ILVANR--GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT-MLHPG  150 (313)
Q Consensus        74 ILIig~--g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id-~vip~  150 (313)
                      |+|++.  +..+..++++|+++|+++++++.+....    .+++.            +         ....++| ++++.
T Consensus         2 I~il~~~~~~~~~~~~~a~~~~G~~v~~~~~~~~~~----~~~~~------------~---------~~~~~~d~~~~~~   56 (280)
T 1uc8_A            2 LAILYDRIRPDERMLFERAEALGLPYKKVYVPALPM----VLGER------------P---------KELEGVTVALERC   56 (280)
T ss_dssp             EEEEESSCCHHHHHHHHHHHHHTCCEEEEEGGGCCE----ETTBC------------C---------GGGTTCCEEEECC
T ss_pred             EEEEecCCCHHHHHHHHHHHHcCCcEEEEehhhcee----eccCC------------C---------cccCCCCEEEECC
Confidence            788884  5678999999999999999997654321    11110            0         1124688 77766


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeecc
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA  230 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~  230 (313)
                      ++.. +...+.+.++..|++++ ++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++++||+|+||..
T Consensus        57 ~~~~-~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~p~~~--~~~~~~~~~~~~~~~~~p~vvKp~~  132 (280)
T 1uc8_A           57 VSQS-RGLAAARYLTALGIPVV-NRPEVIEACGDKWATSVALAKAGLPQPKTA--LATDREEALRLMEAFGYPVVLKPVI  132 (280)
T ss_dssp             SSHH-HHHHHHHHHHHTTCCEE-SCHHHHHHHHBHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEECSB
T ss_pred             ccch-hhHHHHHHHHHCCCcee-CCHHHHHHhCCHHHHHHHHHHcCcCCCCeE--eeCCHHHHHHHHHHhCCCEEEEECC
Confidence            5422 44567788899999988 579999999999999999999999999995  7889999999999999999999999


Q ss_pred             CCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEE
Q 021372          231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVL  283 (313)
Q Consensus       231 g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~  283 (313)
                      |++|+||+++++.+++.++++.+...  ......++++||||+| +.|+++.++
T Consensus       133 g~~~~gv~~v~~~~el~~~~~~~~~~--~~~~~~~~lvqe~i~~~~~e~~v~v~  184 (280)
T 1uc8_A          133 GSWGRLLAXXXXXXXXXXXXXXKEVL--GGFQHQLFYIQEYVEKPGRDIRVFVV  184 (280)
T ss_dssp             CCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCCSSCCEEEEEE
T ss_pred             CCCcccceecccccccchhhhhHhhh--cccCCCcEEEEeccCCCCceEEEEEE
Confidence            99999999999999999888765111  1112478999999997 578877776

>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*

Probab=99.85  E-value=1.9e-20  Score=174.07  Aligned_cols=189  Identities=16%  Similarity=0.228  Sum_probs=137.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcc-hhhhhhcCceEEccCCCCCCCcCCH--HHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESVCIGEAPSSQSYLLI--PNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~~v~~~~~~~~~~~~--~~l~~~~~~~~id~v  147 (313)
                      ..+|+++|++ +++.++++++++|++|++++.+++.+ .....++|+.+..+      .+.+.  +.+++.+++.. ++|
T Consensus        18 ~~~I~ilGs~-l~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d------~~~d~~~~~~l~~l~~~~-~vV   89 (361)
T 2r7k_A           18 EITIATLGSH-TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVD------NFSDIKNEEIQEKLRELN-SIV   89 (361)
T ss_dssp             SCEEEEESST-THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECS------SGGGGGSHHHHHHHHHTT-EEE
T ss_pred             CCEEEEECcH-HHHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECC------CcccccHHHHHHHHHHcC-CEE
Confidence            3569999999 89999999999999999998775532 22456788887553      12231  45555555554 655


Q ss_pred             eeccCcCcccHH---HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcE
Q 021372          148 HPGYGFLAENAV---FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPV  224 (313)
Q Consensus       148 ip~~g~~~e~~~---~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~  224 (313)
                      .|-.    +...   +.++.++.|++++| +.+++....||...+++|+++|||+|++    +.+.+++       +||+
T Consensus        90 ~pe~----~~v~~~gl~~l~~~~g~~v~g-~~~a~~~e~~k~~~k~~l~~~GIptp~~----~~~~~e~-------~~Pv  153 (361)
T 2r7k_A           90 VPHG----SFIAYCGLDNVENSFLVPMFG-NRRILRWESERSLEGKLLREAGLRVPKK----YESPEDI-------DGTV  153 (361)
T ss_dssp             CCBH----HHHHHHCHHHHHHTCCSCBBS-CGGGGGTTTCHHHHHHHHHHTTCCCCCE----ESSGGGC-------CSCE
T ss_pred             EeCc----hhhhHHHHHHHHHHcCCCcCC-CHHHHHHhhhHHHHHHHHHHcCcCCCCE----eCCHHHc-------CCCE
Confidence            5422    2221   22333478999986 8888999999999999999999999975    3444443       6999


Q ss_pred             EEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC---CCcEEEeeccCCCcEEEEEEEEcC
Q 021372          225 MIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG---NDGVYLEKYVQNPRHIEFQVLADK  286 (313)
Q Consensus       225 VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~---~~~vlvEe~I~G~~e~~v~v~~d~  286 (313)
                      ||||..+++|+||++++|.+|+.++++.+....  .++   ..+++|||||+| .++++..+...
T Consensus       154 VVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~--~~~~~~~~~viIEEfl~G-~e~s~~~f~~~  215 (361)
T 2r7k_A          154 IVKFPGARGGRGYFIASSTEEFYKKAEDLKKRG--ILTDEDIANAHIEEYVVG-TNFCIHYFYSP  215 (361)
T ss_dssp             EEECSCCCC---EEEESSHHHHHHHHHHHHHTT--SCCHHHHHHCEEEECCCS-EEEEEEEEEET
T ss_pred             EEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcc--ccccCCCCeEEEEeccce-EEeeEEEEecc
Confidence            999999999999999999999999998775321  011   146999999999 88886666654

>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9

Probab=99.82  E-value=8.8e-21  Score=173.32  Aligned_cols=182  Identities=12%  Similarity=0.131  Sum_probs=123.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcc-hhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~-~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|.++|+| +++.++++|+++|++|++++..++.+ .....++|+.+.++.      +.+      + . ...|+|.|
T Consensus         2 ~~~I~~lGsg-l~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~------~~d------l-~-~~~dvitp   66 (320)
T 2pbz_A            2 SLIVSTIASH-SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEE------MTS------I-L-NDDGIVVP   66 (320)
T ss_dssp             --CEEEESST-THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSC------SCC------T-T-CCSSBCCC
T ss_pred             ceEEEEEcCH-hHHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCc------HHH------H-H-hcCCEEEe
Confidence            4569999999 99999999999999999998765432 225668898886531      222      2 2 23477775


Q ss_pred             ccCcCcccHH--HHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEe
Q 021372          150 GYGFLAENAV--FVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIK  227 (313)
Q Consensus       150 ~~g~~~e~~~--~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvK  227 (313)
                      ..    |+..  ..+.+++.+++++ ++.+++....||...+++|+++|||+|+++  ..   +++     +++||+|||
T Consensus        67 e~----e~v~~~~l~~le~~~~p~~-p~~~~l~~~~dr~~~~~~l~~~Gip~P~~~--~~---ee~-----~i~~PviVK  131 (320)
T 2pbz_A           67 HG----SFVAYLGIEAIEKAKARFF-GNRRFLKWETTFELQDKALEGAGIPRVEVV--EP---EDA-----KPDELYFVR  131 (320)
T ss_dssp             BT----THHHHSCHHHHHTCCSCCB-SCSSGGGGGSCHHHHHHHHHHHTCCBCCBC--CS---CCC-----CSSCCEEEE
T ss_pred             cc----cchhHHHHHHHHHcCCCcC-CCHHHHHHHHhHHHHHHHHHHCCcCCCCee--CH---hHc-----CcCCcEEEE
Confidence            43    4321  2344678899987 788999999999999999999999999985  22   222     489999999


Q ss_pred             eccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEE
Q 021372          228 ATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHF  293 (313)
Q Consensus       228 P~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~  293 (313)
                      |..|++|+|+++++| +|+..+++.+        . .+++|||||+| .++++.++.+. +|++..+
T Consensus       132 p~~g~ggkG~~~v~~-eel~~~~~~~--------~-~~~IiEEfI~g-~~~~~~~f~~~~~g~~e~~  187 (320)
T 2pbz_A          132 IEGPRGGSGHFIVEG-SELEERLSTL--------E-EPYRVERFIPG-VYLYVHFFYSPILERLELL  187 (320)
T ss_dssp             CC------------C-EECSCCCC-------------CCEEEECCCS-CEEEEEEEEETTTTEEEEE
T ss_pred             ECCCCCCCCEEEECh-HHHHHHHHhc--------C-CCEEEEeeece-EecceeEEeccccCceeEE
Confidence            999999999999999 9997766543        1 47999999999 77776677663 4555444

>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=4.2e-20  Score=142.09  Aligned_cols=104  Identities=45%  Similarity=0.756  Sum_probs=89.6

Q ss_pred             HHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Q 021372          180 RIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA  259 (313)
Q Consensus       180 ~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~  259 (313)
                      ..+.||..++++|+++|||+|+++...+.+.+++.+++++++||+|+||..|++|+||.+++|.+|+.++++.+......
T Consensus         4 ~~~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~   83 (108)
T 2cqy_A            4 GSSGDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAAS   83 (108)
T ss_dssp             CCCCCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999998422678999999999999999999999999999999999999999999988654333


Q ss_pred             cCCCCcEEEeeccCCCcEEEEEEE
Q 021372          260 AFGNDGVYLEKYVQNPRHIEFQVL  283 (313)
Q Consensus       260 ~~~~~~vlvEe~I~G~~e~~v~v~  283 (313)
                      .+++..+||||||+|.+|++|.++
T Consensus        84 ~~~~~~~lvee~i~g~~E~~v~v~  107 (108)
T 2cqy_A           84 SFGDDRLLIEKFIDNPRHISGPSS  107 (108)
T ss_dssp             HTSSCCEEEEECCSSSSCCCSCCC
T ss_pred             hcCCCcEEEeeccCCCcEEEEEec
Confidence            344578999999999669888764

>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A

Probab=99.74  E-value=9.4e-18  Score=152.31  Aligned_cols=200  Identities=12%  Similarity=0.056  Sum_probs=135.6

Q ss_pred             cEEEEEcCC--------HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc-eEEccCCCCCCCcCC--HHHHHHHHH
Q 021372           72 EKILVANRG--------EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-SVCIGEAPSSQSYLL--IPNVLSAAI  140 (313)
Q Consensus        72 ~~ILIig~g--------~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~-~~~v~~~~~~~~~~~--~~~l~~~~~  140 (313)
                      +||+|+.++        ..+..++++++++|+++++++.+..........++. .+.+..  ....+..  .+.+..   
T Consensus         2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---   76 (316)
T 1gsa_A            2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQ--NYEEWFSFVGEQDLP---   76 (316)
T ss_dssp             CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECS--CSSCCEEEEEEEEEE---
T ss_pred             ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEecc--CcccceeccCccccc---
Confidence            467777766        357899999999999999997543221111111111 111110  0011100  000001   


Q ss_pred             hcCCCEEeeccCcCc-c-c---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHH
Q 021372          141 SRGCTMLHPGYGFLA-E-N---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVK  215 (313)
Q Consensus       141 ~~~id~vip~~g~~~-e-~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~  215 (313)
                      ..++|+|++...... + .   ..+.+.++..|++++ ++++++..+.||..++++++    |+|+++  .+.+.+++.+
T Consensus        77 ~~~~d~v~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~dK~~~~~~l~----~~P~t~--~~~~~~~~~~  149 (316)
T 1gsa_A           77 LADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIV-NKPQSLRDCNEKLFTAWFSD----LTPETL--VTRNKAQLKA  149 (316)
T ss_dssp             GGGSSEEEECCCCCCCHHHHHHHHHHHHHHHTTCEEE-SCHHHHHHCCTTGGGGGGTT----TSCCEE--EESCHHHHHH
T ss_pred             cccCCEEEEecCCCCchhhHHHHHHHHHHHHcCCeEe-cCHHHHHhhhhHHHHHhhhh----cCCCeE--EeCCHHHHHH
Confidence            135899998653211 1 1   245566778899877 79999999999999999998    999995  7889999988


Q ss_pred             HHHHhCCcEEEeeccCCCCccEEEeC-CHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEE
Q 021372          216 LADELGFPVMIKATAGGGGRGMRLAK-EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       216 ~~~~lg~P~VvKP~~g~gg~GV~~v~-~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~  292 (313)
                      ++++++ |+|+||..|++|+||++++ +.+++..+++.+..     .+..++|+||||+|  +.|+++.++   +|+++.
T Consensus       150 ~~~~~~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~-----~~~~~~lvqe~i~~~~~~~~~v~~~---~g~~~~  220 (316)
T 1gsa_A          150 FWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTE-----HGTRYCMAQNYLPAIKDGDKRVLVV---DGEPVP  220 (316)
T ss_dssp             HHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTT-----TTTSCEEEEECCGGGGGCEEEEEEE---TTEECS
T ss_pred             HHHHcC-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHh-----cCCceEEEecccCCCCCCCEEEEEE---CCEEee
Confidence            888899 9999999999999999998 88888887765421     12368999999998  456666554   345544

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}

Probab=99.71  E-value=3.1e-18  Score=172.22  Aligned_cols=155  Identities=21%  Similarity=0.180  Sum_probs=124.2

Q ss_pred             CCHHHHHHHHHhcCCCEEeeccC-cCcccHHHHHHHH--HcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc
Q 021372          130 LLIPNVLSAAISRGCTMLHPGYG-FLAENAVFVEMCR--EHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL  206 (313)
Q Consensus       130 ~~~~~l~~~~~~~~id~vip~~g-~~~e~~~~~~~l~--~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~  206 (313)
                      .+.+.|+++|+++++|+++.+.. .+.... ....+.  ..++...+++..++..+.||..++++|+++|||+|++.  .
T Consensus       433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~lg-~~~~~~~ig~~~~t~~~s~~aa~~~~DK~~tk~lL~~~GIPvP~~~--~  509 (757)
T 3ln7_A          433 LSTQALLFDVIQKGIHTEILDENDQFLCLK-YGDHIEYVKNGNMTSHDSYISPLIMENKVVTKKVLQKAGFNVPQSV--E  509 (757)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEETTTTEEEEE-ETTEEEEEETTTBCSSSBSHHHHHHHHSHHHHHHHHHHTCCCCCEE--E
T ss_pred             CCHHHHHHHHHHhCCCEEEECCCHHHHHhc-ccccceeeccCccCCCCHHHHHHHhcCHHHHHHHHHHCCcCCCCEE--E
Confidence            56889999999999999987631 111000 001111  12555567788999999999999999999999999995  8


Q ss_pred             CCCHHHHHHHH-HHhCCcEEEeeccCCCCccEEEe----CCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEE
Q 021372          207 LQSTEEAVKLA-DELGFPVMIKATAGGGGRGMRLA----KEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQ  281 (313)
Q Consensus       207 ~~~~~~~~~~~-~~lg~P~VvKP~~g~gg~GV~~v----~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~  281 (313)
                      +.+.+++.+++ +.+|||+||||..|++|+||.++    ++.+++.++++.+...      +..++|||||+| +|++|.
T Consensus       510 ~~~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~~~------~~~vlVEefI~G-~Ei~v~  582 (757)
T 3ln7_A          510 FTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAFRE------DKEVMVEDYLVG-TEYRFF  582 (757)
T ss_dssp             ESCHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHHHH------CSSEEEEECCCS-EEEEEE
T ss_pred             ECCHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHHhc------CCcEEEEEcCCC-cEEEEE
Confidence            88999887766 67899999999999999999998    8999999999877643      378999999999 999999


Q ss_pred             EEEcCCCCEEEEeecc
Q 021372          282 VLADKYGNVVHFGERD  297 (313)
Q Consensus       282 v~~d~~G~vv~~~~r~  297 (313)
                      ++.   |+++...+|.
T Consensus       583 Vlg---gkvvaai~R~  595 (757)
T 3ln7_A          583 VLG---DETLAVLLRV  595 (757)
T ss_dssp             EET---TEEEEEEEEC
T ss_pred             EEC---CEEEEEEEEe
Confidence            984   4788776664

>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*

Probab=99.69  E-value=4.1e-17  Score=149.29  Aligned_cols=166  Identities=10%  Similarity=0.125  Sum_probs=122.3

Q ss_pred             cEEEEEcCC-HhHHHHHHHHHHcCCcE--EEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           72 EKILVANRG-EIAVRVIRTAHEMGIPC--VAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        72 ~~ILIig~g-~~a~~v~~al~~~G~~v--i~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++|+|+... .....++++|+++|+++  ++++.+.  .            +.       ...          ..+|+++
T Consensus        12 m~i~il~~~~~~s~~l~~al~~~G~~v~~~~~d~~~--~------------~~-------~~~----------~~~d~v~   60 (324)
T 1z2n_X           12 VSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTL--S------------TE-------LPD----------KEPNAII   60 (324)
T ss_dssp             EEEEEECCHHHHHHHBSSCCSEEEEEETTEEEEEEE--E------------SS-------CCS----------SCCSEEE
T ss_pred             EEEEEEEchhhhhhhHHHHHHhcCcEEEEEEecCCC--C------------cc-------ccC----------CCceEEE
Confidence            578888752 22337778899999999  8886421  0            10       000          1578887


Q ss_pred             eccCcC-cccHHHHHHHHH--cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHh--CCc
Q 021372          149 PGYGFL-AENAVFVEMCRE--HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADEL--GFP  223 (313)
Q Consensus       149 p~~g~~-~e~~~~~~~l~~--~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~l--g~P  223 (313)
                      +..... .+.....+.++.  .|+++. ++++++..+.||..++++|+++|||+|+++  .+.+.+++.+++++.  +||
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~g~~~~-~~~~~~~~~~dK~~~~~~l~~~gi~~P~~~--~~~~~~~~~~~~~~~~~~~P  137 (324)
T 1z2n_X           61 TKRTHPVGKMADEMRKYEKDHPKVLFL-ESSAIHDMMSSREEINALLIKNNIPIPNSF--SVKSKEEVIQLLQSKQLILP  137 (324)
T ss_dssp             ECCSCSSSHHHHHHHHHHHHCTTSEEE-TCHHHHHHHTBHHHHHHHHHHTTCCCSCEE--EESSHHHHHHHHHTTCSCSS
T ss_pred             EeccchHHHHHHHHHHHHHhCCCCeEe-CCHHHHHHHhCHHHHHHHHHHCCCCCCCEE--EeCCHHHHHHHHHHcCCCCC
Confidence            754211 112233333333  788875 899999999999999999999999999995  788888888888775  499


Q ss_pred             EEEeeccCCCC---ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEE
Q 021372          224 VMIKATAGGGG---RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLA  284 (313)
Q Consensus       224 ~VvKP~~g~gg---~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~  284 (313)
                      +|+||..|.||   .|+.++++.+++..             .+.++++||||++ +.++++.++.
T Consensus       138 ~vvKP~~g~g~~~s~gv~~v~~~~~l~~-------------~~~~~lvqe~i~~~g~~~~v~v~g  189 (324)
T 1z2n_X          138 FIVKPENAQGTFNAHQMKIVLEQEGIDD-------------IHFPCLCQHYINHNNKIVKVFCIG  189 (324)
T ss_dssp             EEEEESBCSSSSGGGEEEEECSGGGGTT-------------CCSSEEEEECCCCTTCEEEEEEET
T ss_pred             EEEeeCCCCCCccceeeEEEeCHHHHhh-------------cCCCEEEEEccCCCCcEEEEEEEC
Confidence            99999999998   99999999887653             1378999999986 4788887764

>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}

Probab=99.67  E-value=3.8e-16  Score=137.19  Aligned_cols=112  Identities=23%  Similarity=0.371  Sum_probs=97.7

Q ss_pred             hCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccC-----CCCccEEE-eCCHHHHHHHHHHHHH
Q 021372          182 MGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAG-----GGGRGMRL-AKEPDEFVKLLQQAKS  255 (313)
Q Consensus       182 ~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g-----~gg~GV~~-v~~~~el~~~~~~~~~  255 (313)
                      ..||+.++++|+++|||+|+++  .+.+.+++.++++++|||+|+||..+     +++.||.+ ++|.+|+.++++.+..
T Consensus        19 ~l~k~~~k~ll~~~GIp~p~~~--~~~~~~ea~~~a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~   96 (238)
T 1wr2_A           19 AMVEYEAKQVLKAYGLPVPEEK--LAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHE   96 (238)
T ss_dssp             EECHHHHHHHHHTTTCCCCCCE--EESSHHHHHHHHHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCcCCCCeE--EeCCHHHHHHHHHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHH
Confidence            4699999999999999999995  88999999999999999999999998     67888998 7999999999999877


Q ss_pred             HHHhcCC---CCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEee
Q 021372          256 EAAAAFG---NDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFGE  295 (313)
Q Consensus       256 ~~~~~~~---~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~~  295 (313)
                      .....++   ...++||+|+++++|+.+.++.|. .|.++.++.
T Consensus        97 ~~~~~~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~g~v~~~~~  140 (238)
T 1wr2_A           97 NAKKYRPDAEILGVLVAPMLKPGREVIIGVTEDPQFGHAIMFGL  140 (238)
T ss_dssp             HHHHHCTTCCCCEEEEEECCCCCEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhCCCCccceEEEEECCCCCeEEEEEEEeCCCCCcEEEEec
Confidence            6543332   368999999996699999999998 788887764

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}

Probab=99.65  E-value=7e-16  Score=155.38  Aligned_cols=111  Identities=20%  Similarity=0.289  Sum_probs=95.1

Q ss_pred             CHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHH-HHhCCcEEEeeccCCCCccEEEeC---CHHHHHHHH
Q 021372          175 NPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLA-DELGFPVMIKATAGGGGRGMRLAK---EPDEFVKLL  250 (313)
Q Consensus       175 ~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~-~~lg~P~VvKP~~g~gg~GV~~v~---~~~el~~~~  250 (313)
                      +..++..+.||..++++|+++|||+|++.  .+.+.+++.+++ +.+|||+||||..|++|+||.+++   +.+++.+++
T Consensus       475 ~~~a~~~~~DK~~tk~lL~~~GIPvP~~~--~~~~~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~  552 (750)
T 3ln6_A          475 NYIVPLAMANKVVTKKILDEKHFPTPFGD--EFTDRKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAI  552 (750)
T ss_dssp             CTHHHHHTTTSHHHHHHHHHTTCCCCCCC--CEETTTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHHHHHHCCcCCCCEE--EECCHHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHH
Confidence            34466777899999999999999999995  788888887777 678999999999999999999998   899999999


Q ss_pred             HHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeecc
Q 021372          251 QQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD  297 (313)
Q Consensus       251 ~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~  297 (313)
                      +.+...      +..+||||||+| +|++|.++.+   +++...+|.
T Consensus       553 ~~~~~~------~~~vlVEefI~G-~E~~v~Vvgg---~vvaa~~r~  589 (750)
T 3ln6_A          553 DIAFTE------DSAILVEEYIEG-TEYRFFVLEG---DCIAVLLRV  589 (750)
T ss_dssp             HHHHHH------CSEEEEEECCCS-EEEEEEEETT---EEEEEEEEE
T ss_pred             HHHHhh------CCcEEEEeccCC-CEEEEEEECC---EEEEEEEEe
Confidence            887653      378999999999 9999999844   677665553

>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}

Probab=99.60  E-value=4e-15  Score=135.40  Aligned_cols=121  Identities=13%  Similarity=0.205  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhcCCCEEeeccCcCccc---HHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCC
Q 021372          132 IPNVLSAAISRGCTMLHPGYGFLAEN---AVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQ  208 (313)
Q Consensus       132 ~~~l~~~~~~~~id~vip~~g~~~e~---~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~  208 (313)
                      .+.+.++++  .+|++++.  ...++   ..+.+.++..| .++|++++++..+.||..+++++++ |||+|+++  .  
T Consensus        60 ~~~l~~~~~--~~D~~~~i--~~~ed~~l~~~~~~l~~~g-~~~g~~~~~~~~~~dK~~~~~~l~~-Gip~p~~~--~--  129 (305)
T 3df7_A           60 MDSMEKYLE--KSDAFLII--APEDDFLLYTLTKKAEKYC-ENLGSSSRAIAVTSDKWELYKKLRG-EVQVPQTS--L--  129 (305)
T ss_dssp             GGGHHHHHT--TCSEEEEE--CCCGGGHHHHHHHHHHTTS-EESSCCHHHHHHHTSHHHHHHHHTT-TSCCCCEE--S--
T ss_pred             HHHHHHHHH--hcCEEEEE--ccCCcHHHHHHHHHHHhcC-CccCCCHHHHHHhcCHHHHHHHHHh-CCCCCCEe--c--
Confidence            346667664  57776665  12233   34556666666 6889999999999999999999999 99999984  2  


Q ss_pred             CHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCC
Q 021372          209 STEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYG  288 (313)
Q Consensus       209 ~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G  288 (313)
                               .+++||+|+||..|+||+||+++++                   .+.++++||||+| +|+++.++.++  
T Consensus       130 ---------~~~~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~G-~e~sv~v~~g~--  178 (305)
T 3df7_A          130 ---------RPLDCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIEG-INLSVSLAVGE--  178 (305)
T ss_dssp             ---------SCCSSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCCS-EEEEEEEEESS--
T ss_pred             ---------ccCCCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccCC-cEEEEEEEeCC--
Confidence                     2578999999999999999999988                   1378999999999 99999999852  


Q ss_pred             CEEEE
Q 021372          289 NVVHF  293 (313)
Q Consensus       289 ~vv~~  293 (313)
                      .+..+
T Consensus       179 ~~~~~  183 (305)
T 3df7_A          179 DVKCL  183 (305)
T ss_dssp             SEEEE
T ss_pred             eEEEE
Confidence            44444

>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*

Probab=99.59  E-value=1.2e-14  Score=131.80  Aligned_cols=137  Identities=17%  Similarity=0.169  Sum_probs=106.7

Q ss_pred             CCCEEeeccCcCc--c---cHHHHHHHHHcCCceeCCCHHHHHHhCCH----HHHHHHHHHCCC---CCCCCCcccCCCH
Q 021372          143 GCTMLHPGYGFLA--E---NAVFVEMCREHGINFIGPNPDSIRIMGDK----STARETMKNAGV---PTVPGSDGLLQST  210 (313)
Q Consensus       143 ~id~vip~~g~~~--e---~~~~~~~l~~~gi~~~g~~~~~i~~~~DK----~~~~~~l~~~Gi---p~p~~~~~~~~~~  210 (313)
                      .+|++++-.+...  +   ...+...++..|++++ ++++++..+.||    ..+.++++++|+   |.|++.  ...+.
T Consensus        68 ~~D~vi~R~~~~~~~~~~~~r~vl~~le~~Gvpvi-N~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~--~~~~~  144 (309)
T 1i7n_A           68 RPDFVLIRQHAFGMAENEDFRHLVIGMQYAGLPSI-NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQT--YYPNH  144 (309)
T ss_dssp             CCSEEEECSCCCCSSTTCCCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCE--EESSG
T ss_pred             cCCEEEEecccccccccchHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEE--eeCCh
Confidence            5799998754222  1   1355677899999999 999999999999    667788899998   855542  33443


Q ss_pred             HHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCE
Q 021372          211 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV  290 (313)
Q Consensus       211 ~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~v  290 (313)
                      .+   ..+.+|||+|+||..|+.|+||.++++.+++++.++.+...      +..+++||||+.++++.+.++++   ++
T Consensus       145 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VvGg---~v  212 (309)
T 1i7n_A          145 RE---MLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGN---NY  212 (309)
T ss_dssp             GG---GSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EE
T ss_pred             hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeecCCCceEEEEEECC---EE
Confidence            33   34568999999999999999999999999999888765443      26789999999879999999955   56


Q ss_pred             EEEe
Q 021372          291 VHFG  294 (313)
Q Consensus       291 v~~~  294 (313)
                      +.+.
T Consensus       213 ~a~~  216 (309)
T 1i7n_A          213 KAYM  216 (309)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}

Probab=99.54  E-value=3.3e-14  Score=130.53  Aligned_cols=136  Identities=14%  Similarity=0.154  Sum_probs=105.9

Q ss_pred             CCCEEeeccCcCc--c---cHHHHHHHHHcCCceeCCCHHHHHHhCCH----HHHHHHHHHCCC---CCCCCCcccCCCH
Q 021372          143 GCTMLHPGYGFLA--E---NAVFVEMCREHGINFIGPNPDSIRIMGDK----STARETMKNAGV---PTVPGSDGLLQST  210 (313)
Q Consensus       143 ~id~vip~~g~~~--e---~~~~~~~l~~~gi~~~g~~~~~i~~~~DK----~~~~~~l~~~Gi---p~p~~~~~~~~~~  210 (313)
                      .+|+|++-.+...  +   ...+...++..|++++ ++++++..+.||    ..+.+++.++|+   |.|++.  ...+.
T Consensus        85 ~~D~vi~R~~~~~~~~~~~yr~vl~~le~~Gvpvi-N~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t--~~~~~  161 (344)
T 2p0a_A           85 KPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAV-NSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQT--FFPNH  161 (344)
T ss_dssp             CCSEEEECSCSEEGGGTEECHHHHHHHHHTTCCEE-SCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCE--EESSS
T ss_pred             CCCEEEEeccccccccchhHHHHHHHHHHCCceec-CCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEE--ecCch
Confidence            6899998754321  1   1355677899999999 999999999999    677888899998   855542  23333


Q ss_pred             HHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCE
Q 021372          211 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV  290 (313)
Q Consensus       211 ~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~v  290 (313)
                      .+   ..+.+|||+|+||..|+.|+||.++++.+++++.++.+...      +..+++||||+.++++.+.++++   ++
T Consensus       162 ~~---~~~~~g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~~~~------~~~~~vQefI~~g~DiRv~VVGg---~v  229 (344)
T 2p0a_A          162 KP---MVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAMA------KTYATTEAFIDSKYDIRIQKIGS---NY  229 (344)
T ss_dssp             TT---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TCCEEEEECCCEEEEEEEEEETT---EE
T ss_pred             hh---hhhccCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHHhcc------CCeEEEEeccCCCccEEEEEECC---EE
Confidence            22   34568999999999999999999999999999888765433      26788999999879999999955   56


Q ss_pred             EEE
Q 021372          291 VHF  293 (313)
Q Consensus       291 v~~  293 (313)
                      +.+
T Consensus       230 va~  232 (344)
T 2p0a_A          230 KAY  232 (344)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*

Probab=99.54  E-value=5.4e-14  Score=131.47  Aligned_cols=136  Identities=14%  Similarity=0.187  Sum_probs=105.6

Q ss_pred             CCCEEeeccCcCc--c---cHHHHHHHHHcCCceeCCCHHHHHHhCCH----HHHHHHHHHCCC---CCCCCCcccCCCH
Q 021372          143 GCTMLHPGYGFLA--E---NAVFVEMCREHGINFIGPNPDSIRIMGDK----STARETMKNAGV---PTVPGSDGLLQST  210 (313)
Q Consensus       143 ~id~vip~~g~~~--e---~~~~~~~l~~~gi~~~g~~~~~i~~~~DK----~~~~~~l~~~Gi---p~p~~~~~~~~~~  210 (313)
                      .+|+|++-.+...  +   ...+...++..|++++ ++++++..+.||    ..+.++++++|+   |.+++.  ...+.
T Consensus       180 ~~DaviiR~~~~~~~~~~~yr~vlr~lE~~Gvpvi-Ns~~sI~~~~DK~~vf~~~l~ll~~~gi~~iP~t~~t--~~~~~  256 (422)
T 1pk8_A          180 KPDFVLIRQHAFSMARNGDYRSLVIGLQYAGIPSV-NSLHSVYNFCDKPWVFAQMVRLHKKLGTEEFPLIDQT--FYPNH  256 (422)
T ss_dssp             CCSEEEECSCSBCSSTTCBCHHHHHHHHHTTCCEE-SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCE--EESSG
T ss_pred             CCCEEEEeccccccccchhHHHHHHHHHHCCcccc-CCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCceE--ecCch
Confidence            5799988653222  1   2355677899999999 999999999999    567788889998   755542  23333


Q ss_pred             HHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCE
Q 021372          211 EEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV  290 (313)
Q Consensus       211 ~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~v  290 (313)
                      .+   .++.+|||+|+||..|+.|+||.++++.+++++.++.+...      ...+++||||+.++++.+.++++   ++
T Consensus       257 ~~---~i~~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~------~~~~~vQEfI~~g~DIRv~VVGg---~v  324 (422)
T 1pk8_A          257 KE---MLSSTTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALT------KTYATAEPFIDAKYDVRVQKIGQ---NY  324 (422)
T ss_dssp             GG---CCCCSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHH------TSCEEEEECCCEEEEEEEEEETT---EE
T ss_pred             hh---hhhccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhcc------CceEEEEeecCCCceEEEEEECC---EE
Confidence            32   34568999999999999999999999999999988765543      26789999999879999999955   56


Q ss_pred             EEE
Q 021372          291 VHF  293 (313)
Q Consensus       291 v~~  293 (313)
                      +.+
T Consensus       325 va~  327 (422)
T 1pk8_A          325 KAY  327 (422)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X

Probab=99.50  E-value=8.5e-14  Score=128.64  Aligned_cols=160  Identities=11%  Similarity=0.140  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC-cCcc-----
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG-FLAE-----  156 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g-~~~e-----  156 (313)
                      ..+++++|+++|++++.++.+..  ...                              ...+|+|++... ...|     
T Consensus        35 ~~~l~~al~~~G~~~~~iD~~~~--~~~------------------------------~~~~Dvvi~~l~~~~~ea~~~d   82 (346)
T 2q7d_A           35 FQAFAELCRKRGMEVVQLNLSRP--IEE------------------------------QGPLDVIIHKLTDVILEADQND   82 (346)
T ss_dssp             HHHHHHHHHTTTCEEEECCTTSC--SGG------------------------------GCCCSEEEECCHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCcEEEEcccccc--hhh------------------------------cCCCCEEEeCCcccccccccCc
Confidence            56789999999999998853211  000                              024677776532 1111     


Q ss_pred             -----cHHHHHHHH--HcCCceeCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCCcccCCC--HHHHHHHHH--
Q 021372          157 -----NAVFVEMCR--EHGINFIGPNPDSIRIMGDKSTARETMKNA-------GVPTVPGSDGLLQS--TEEAVKLAD--  218 (313)
Q Consensus       157 -----~~~~~~~l~--~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~-------Gip~p~~~~~~~~~--~~~~~~~~~--  218 (313)
                           .......++  ..|++++ ++++++..+.||..+.++|.++       |||+|+|+  .+.+  .+++.+.++  
T Consensus        83 ~~~~~~~~~l~~~~~~~~gv~vi-np~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~--~~~~~~~~~~~~~~~~~  159 (346)
T 2q7d_A           83 SQSLELVHRFQEYIDAHPETIVL-DPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM--ELTSLCGDDTMRLLEKN  159 (346)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSEEE-SCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEE--EECSCCCTTHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHCCCeEEc-CCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEE--EEeCCCHHHHHHHHHhc
Confidence                 111122222  2488888 9999999999999999999997       99999996  4544  244544443  


Q ss_pred             HhCCcEEEeeccCC--CCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-CcEEEEEEEEcCCCCEEEE
Q 021372          219 ELGFPVMIKATAGG--GGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-PRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       219 ~lg~P~VvKP~~g~--gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-~~e~~v~v~~d~~G~vv~~  293 (313)
                      .++||+|+||..|.  .+.|+.++.+.++|...             +.++++||||+. +.++.|.++++   +++..
T Consensus       160 ~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~~G~dirv~VvG~---~v~~~  221 (346)
T 2q7d_A          160 GLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAI-------------QPPCVVQNFINHNAVLYKVFVVGE---SYTVV  221 (346)
T ss_dssp             TCCSSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCCTTEEEEEEEETT---EEEEE
T ss_pred             CCCCCEEEEecCCCcceeeeeEEecCHHHHHhc-------------CCCEEEEEeeCCCCeEEEEEEECC---EEEEE
Confidence            57899999999764  36799999999988752             268999999982 49999999854   55554

>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}

Probab=99.41  E-value=6e-13  Score=124.86  Aligned_cols=110  Identities=27%  Similarity=0.372  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEAA  258 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~~  258 (313)
                      .+.+..|++|+++|||+|++.  .+.+.+++.++++++|||+|+||....+++    ||+++++.+|+.++++++.....
T Consensus         3 L~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~   80 (397)
T 3ufx_B            3 LHEYQAKEILARYGVPVPPGK--VAYTPEEAKRIAEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNI   80 (397)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHHHHHHCCCCCCCeE--EECCHHHHHHHHHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhc
Confidence            356789999999999999995  899999999999999999999999855554    99999999999999988754211


Q ss_pred             hcCCCCcEEEeeccCCCcEEEEEEEEcC-CC-CEEEEe
Q 021372          259 AAFGNDGVYLEKYVQNPRHIEFQVLADK-YG-NVVHFG  294 (313)
Q Consensus       259 ~~~~~~~vlvEe~I~G~~e~~v~v~~d~-~G-~vv~~~  294 (313)
                      ..+....+++|||+++++|+.+.++.|+ .| .++.++
T Consensus        81 ~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s  118 (397)
T 3ufx_B           81 KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLS  118 (397)
T ss_dssp             TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEE
T ss_pred             cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEe
Confidence            1112368999999995599999999998 45 455553

>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*

Probab=99.40  E-value=6.9e-13  Score=124.17  Aligned_cols=110  Identities=15%  Similarity=0.233  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCc-EEEeeccCCCCc----cEEEeCCHHHHHHHHHHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGR----GMRLAKEPDEFVKLLQQAKSEA  257 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P-~VvKP~~g~gg~----GV~~v~~~~el~~~~~~~~~~~  257 (313)
                      .+|+.++++|+++|||+|++.  .+.+.+++.++++++||| +|+||..+.||+    ||++++|.+|+.++++.+....
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~--~~~s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~   80 (388)
T 2nu8_B            3 LHEYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKR   80 (388)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSE
T ss_pred             CCHHHHHHHHHHCCcCCCCee--EECCHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhh
Confidence            478999999999999999995  889999999999999999 999999875544    9999999999999998876421


Q ss_pred             H-------hcCCCCcEEEeeccCCCcEEEEEEEEcCC-C-CEEEEe
Q 021372          258 A-------AAFGNDGVYLEKYVQNPRHIEFQVLADKY-G-NVVHFG  294 (313)
Q Consensus       258 ~-------~~~~~~~vlvEe~I~G~~e~~v~v~~d~~-G-~vv~~~  294 (313)
                      .       .......++||+|+++++|+.+.++.|+. | .++.++
T Consensus        81 ~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~  126 (388)
T 2nu8_B           81 LVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMAS  126 (388)
T ss_dssp             ECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEE
T ss_pred             hhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEe
Confidence            0       00113579999999955999999999985 4 666665

>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*

Probab=99.35  E-value=2.6e-12  Score=120.39  Aligned_cols=117  Identities=21%  Similarity=0.311  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC-cEEEeec--cCCCCcc---------EEEeCCHHHHHHHH
Q 021372          183 GDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKAT--AGGGGRG---------MRLAKEPDEFVKLL  250 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~--~g~gg~G---------V~~v~~~~el~~~~  250 (313)
                      .+++.++++|+++|||+|++.  .+.+.+++.++++++|| |+|+||.  .|+.|+|         |++++|.+|+.+++
T Consensus         3 l~E~~aK~lL~~~GIpvp~~~--~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~   80 (395)
T 2fp4_B            3 LQEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLA   80 (395)
T ss_dssp             CCHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCcCCCCeE--EECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHH
Confidence            468899999999999999995  88999999999999999 8999995  5555544         99999999999999


Q ss_pred             HHHHHHHH-------hcCCCCcEEEeeccCCCcEEEEEEEEcCC-C-CEEEEe-eccchhh
Q 021372          251 QQAKSEAA-------AAFGNDGVYLEKYVQNPRHIEFQVLADKY-G-NVVHFG-ERDCSIQ  301 (313)
Q Consensus       251 ~~~~~~~~-------~~~~~~~vlvEe~I~G~~e~~v~v~~d~~-G-~vv~~~-~r~~s~~  301 (313)
                      +++.....       .......++||+|++.++|+.+.++.|+. | .++.++ +--+.++
T Consensus        81 ~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE  141 (395)
T 2fp4_B           81 KQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIE  141 (395)
T ss_dssp             HTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHH
T ss_pred             HHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccce
Confidence            88754310       00012479999999966999999999984 4 666665 3334444

>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*

Probab=98.99  E-value=5.7e-11  Score=105.81  Aligned_cols=142  Identities=12%  Similarity=0.129  Sum_probs=95.0

Q ss_pred             CCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCH------------H
Q 021372          144 CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQST------------E  211 (313)
Q Consensus       144 id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~------------~  211 (313)
                      +|.+++-++.........+.++..+..++ |+..++..++||..++++|+++|||+|++.  .+...            +
T Consensus        58 ~d~lisf~s~gfpl~kai~y~~lr~p~~I-Nd~~~q~~~~DK~~~~~iL~~~gIPtP~t~--~~~rd~~~~~~~~~~e~~  134 (330)
T 3t7a_A           58 CDCLISFHSKGFPLDKAVAYAKLRNPFVI-NDLNMQYLIQDRREVYSILQAEGILLPRYA--ILNRDPNNPKECNLIEGE  134 (330)
T ss_dssp             CSEEEECCCTTCCHHHHHHHHHHHCCEES-BCSTHHHHHTBHHHHHHHHHHTTCCCCCEE--EECCBTTBGGGSSEEECS
T ss_pred             CCEEEEeccCCCcHHHHHHHHHHhCCcee-CCHHHHHHHHHHHHHHHHHHHcCCCCCCEE--EEeCCCCCccccceeccc
Confidence            77888765322233456677777777666 899999999999999999999999999995  33321            1


Q ss_pred             HHHH-HHHHhCCcEEEeeccCC-----------CCcc----EEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC-
Q 021372          212 EAVK-LADELGFPVMIKATAGG-----------GGRG----MRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN-  274 (313)
Q Consensus       212 ~~~~-~~~~lg~P~VvKP~~g~-----------gg~G----V~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G-  274 (313)
                      +..+ ....+++|+|+||..|.           .|.|    +.++.|.+...+.-..+       ..+..+|+||||+- 
T Consensus       135 d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~v-------r~~~~~i~QEFI~~~  207 (330)
T 3t7a_A          135 DHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNV-------RKTGSYIYEEFMPTD  207 (330)
T ss_dssp             SEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSC-------CSSSCEEEEECCCCS
T ss_pred             hhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhh-------ccCCcEEEEeccCCC
Confidence            1111 23456799999999996           3333    44555443320000001       12478999999973 


Q ss_pred             CcEEEEEEEEcCCCCEEEEeeccc
Q 021372          275 PRHIEFQVLADKYGNVVHFGERDC  298 (313)
Q Consensus       275 ~~e~~v~v~~d~~G~vv~~~~r~~  298 (313)
                      ++++.+.++++   ++++...|..
T Consensus       208 G~DIRv~vVG~---~vv~Am~R~s  228 (330)
T 3t7a_A          208 GTDVKVYTVGP---DYAHAEARKS  228 (330)
T ss_dssp             SEEEEEEEEST---TCEEEEEEEC
T ss_pred             CceEEEEEECC---EEEEEEEEeC
Confidence            49999998865   7777766643

>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*

Probab=98.08  E-value=4e-06  Score=78.86  Aligned_cols=109  Identities=12%  Similarity=0.007  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHCCC---C-CCC-CCcccC---CCHHHHHHHHHHhC-CcEEEeeccCCC----CccEEEeCCHHHHHHHHH
Q 021372          185 KSTARETMKNAGV---P-TVP-GSDGLL---QSTEEAVKLADELG-FPVMIKATAGGG----GRGMRLAKEPDEFVKLLQ  251 (313)
Q Consensus       185 K~~~~~~l~~~Gi---p-~p~-~~~~~~---~~~~~~~~~~~~lg-~P~VvKP~~g~g----g~GV~~v~~~~el~~~~~  251 (313)
                      .+..|++|.++++   | +.+ -+ ..+   ++.+++.+.++++| ||+|+|+..-.+    +-||.+..+++|+.++++
T Consensus         8 Ey~~K~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~   86 (425)
T 3mwd_A            8 EQTGKELLYKFICTTSAIQNRFKY-ARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLK   86 (425)
T ss_dssp             HHHHHHHHHHHCCCSSCBCSTTCC-EEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccCCccCCcce-EEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHH
Confidence            4678899999999   4 222 11 233   45688888888998 999999976322    237888899999999988


Q ss_pred             HHHHHHHhc----CCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEEEe
Q 021372          252 QAKSEAAAA----FGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       252 ~~~~~~~~~----~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~~~  294 (313)
                      ++.......    ..-..++||++++.  .+|+-+.+..|..|.++.++
T Consensus        87 ~ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~gpvI~~s  135 (425)
T 3mwd_A           87 PRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH  135 (425)
T ss_dssp             TTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred             HHHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCCCCEEEEE
Confidence            775332100    01246999999975  48999999999988888774

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=97.91  E-value=8.9e-06  Score=82.18  Aligned_cols=109  Identities=13%  Similarity=0.042  Sum_probs=80.7

Q ss_pred             CHHHHHHHHHHCCCC------CCCCCcccCC---CHHHHHHHHHHhC-CcEEEeeccCCCCc----cEEEeCCHHHHHHH
Q 021372          184 DKSTARETMKNAGVP------TVPGSDGLLQ---STEEAVKLADELG-FPVMIKATAGGGGR----GMRLAKEPDEFVKL  249 (313)
Q Consensus       184 DK~~~~~~l~~~Gip------~p~~~~~~~~---~~~~~~~~~~~lg-~P~VvKP~~g~gg~----GV~~v~~~~el~~~  249 (313)
                      -.+..|++|.++++|      .+++  ..++   +.+++.+.++.+| +|+|+|+..-.|+|    ||.+..|++|+.++
T Consensus         7 ~Ey~aK~ll~~~~~~~~~~~~~~~~--~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~a   84 (829)
T 3pff_A            7 SEQTGKELLYKFICTTSAIQNRFKY--ARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSW   84 (829)
T ss_dssp             CHHHHHHHHHHHCCCSSCBCSTTCC--EEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHH
T ss_pred             hHHHHHHHHHHhCccccccccCCce--EEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHH
Confidence            356789999999998      3344  2444   4577777778887 99999997655443    68888999999999


Q ss_pred             HHHHHHHHHh----cCCCCcEEEeeccCC--CcEEEEEEEEcCCCCEEEEe
Q 021372          250 LQQAKSEAAA----AFGNDGVYLEKYVQN--PRHIEFQVLADKYGNVVHFG  294 (313)
Q Consensus       250 ~~~~~~~~~~----~~~~~~vlvEe~I~G--~~e~~v~v~~d~~G~vv~~~  294 (313)
                      ++++......    ...-..++||++++.  .+|+.+.+..|..|.++.++
T Consensus        85 a~~iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~gpvIm~s  135 (829)
T 3pff_A           85 LKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATREGDYVLFH  135 (829)
T ss_dssp             HTTTTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCCCCEEEEE
Confidence            8887643211    001246999999974  48999999999988888775

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.55  E-value=0.00027  Score=55.85  Aligned_cols=116  Identities=13%  Similarity=0.013  Sum_probs=67.1

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ..+.++|+|+|.|..|..+++.|++.|++|++++.++.............+ .+      +..+.+.+.+ +.-.+.|++
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i-~g------d~~~~~~l~~-a~i~~ad~v   75 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAV-LG------NAANEEIMQL-AHLECAKWL   75 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEE-ES------CTTSHHHHHH-TTGGGCSEE
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEE-EC------CCCCHHHHHh-cCcccCCEE
Confidence            345788999999999999999999999999999876654332222222222 22      1233333333 333468988


Q ss_pred             eeccCcCcccHHHHHHHHHc--CCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREH--GINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~--gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      +...+...++......+.+.  ++.+       +....|... .+.|+++|+..
T Consensus        76 i~~~~~~~~n~~~~~~a~~~~~~~~i-------iar~~~~~~-~~~l~~~G~d~  121 (140)
T 3fwz_A           76 ILTIPNGYEAGEIVASARAKNPDIEI-------IARAHYDDE-VAYITERGANQ  121 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEE-------EEEESSHHH-HHHHHHTTCSE
T ss_pred             EEECCChHHHHHHHHHHHHHCCCCeE-------EEEECCHHH-HHHHHHCCCCE
Confidence            86653222232233333332  2332       233444443 46677788763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.45  E-value=0.00071  Score=50.96  Aligned_cols=93  Identities=10%  Similarity=0.104  Sum_probs=58.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+++|+|+|+|.+|..+++.|.+.| ++|++++.++..........-..+..+       ..+.+.+.+.+  .++|.|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d-------~~~~~~~~~~~--~~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVD-------AKDEAGLAKAL--GGFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECC-------TTCHHHHHHHT--TTCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEec-------CCCHHHHHHHH--cCCCEEE
Confidence            4678999999999999999999999 888888654432221111111222222       33455666655  3689998


Q ss_pred             eccCcCcccHHHHHHHHHcCCcee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ...+.. ....+.+.+.+.|++++
T Consensus        75 ~~~~~~-~~~~~~~~~~~~g~~~~   97 (118)
T 3ic5_A           75 SAAPFF-LTPIIAKAAKAAGAHYF   97 (118)
T ss_dssp             ECSCGG-GHHHHHHHHHHTTCEEE
T ss_pred             ECCCch-hhHHHHHHHHHhCCCEE
Confidence            654322 22455566667777665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.32  E-value=0.0039  Score=56.47  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=78.4

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----h---hcCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----K---LADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      +++|||+|+ |.+|..+++.|.+.|++|+++..+........    .   .....+..       +..+.+.+.+++++.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~-------Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYG-------LINEQEAMEKILKEH   82 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEEC-------CTTCHHHHHHHHHHT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEe-------ecCCHHHHHHHHhhC
Confidence            468999995 88999999999999999999976542211111    0   11222222       245678888888878


Q ss_pred             CCCEEeeccCcCc--ccHHHHHHHHHcC-Ccee-----CCC-------HHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          143 GCTMLHPGYGFLA--ENAVFVEMCREHG-INFI-----GPN-------PDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       143 ~id~vip~~g~~~--e~~~~~~~l~~~g-i~~~-----g~~-------~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ++|+|+-..+...  ....+.+++.+.| ++.+     |.+       .........|....+++++.|+++
T Consensus        83 ~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~g~~~  154 (346)
T 3i6i_A           83 EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQLVEESGIPF  154 (346)
T ss_dssp             TCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECSCCSSCTTTCCCCTTHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             CCCEEEECCchhhHHHHHHHHHHHHHcCCceEEeecccCCCCCccCcCCCcchHHHHHHHHHHHHHHcCCCE
Confidence            9999987654221  1245667777777 6433     211       112233456888888999888765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.28  E-value=0.00045  Score=54.36  Aligned_cols=113  Identities=15%  Similarity=0.040  Sum_probs=63.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +++|+|+|.|..|..+++.|.+.|++|++++.++.............+..+       ..+.+.+.++ .-.++|+|+..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd-------~~~~~~l~~~-~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIAD-------PTDESFYRSL-DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECC-------TTCHHHHHHS-CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECC-------CCCHHHHHhC-CcccCCEEEEe
Confidence            578999999999999999999999999999766543322222112222221       2333333332 22468988876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP  198 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip  198 (313)
                      .+....+......+.+.+...+      +....+. ...+.|++.|+.
T Consensus        78 ~~~~~~n~~~~~~a~~~~~~~i------ia~~~~~-~~~~~l~~~G~~  118 (141)
T 3llv_A           78 GSDDEFNLKILKALRSVSDVYA------IVRVSSP-KKKEEFEEAGAN  118 (141)
T ss_dssp             CSCHHHHHHHHHHHHHHCCCCE------EEEESCG-GGHHHHHHTTCS
T ss_pred             cCCHHHHHHHHHHHHHhCCceE------EEEEcCh-hHHHHHHHcCCC
Confidence            5422223334444444442211      1122222 233566777864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.19  E-value=0.003  Score=56.43  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=74.5

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhh---cCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKL---ADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~---ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      ..|+++|||+| .|.+|..+++.|.+.|++|++++.++..... ...+   .-+.+..       +..+.+.+.++++  
T Consensus         8 ~~m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~-------Dl~d~~~l~~a~~--   78 (318)
T 2r6j_A            8 NGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKG-------ELDEHEKLVELMK--   78 (318)
T ss_dssp             -CCCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEEC-------CTTCHHHHHHHHT--
T ss_pred             cCCCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEe-------cCCCHHHHHHHHc--
Confidence            34567899999 5889999999999999999998765431111 0001   1122322       2456677777764  


Q ss_pred             CCCEEeeccCcC--cccHHHHHHHHHcC-Ccee-----CCC-------HHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          143 GCTMLHPGYGFL--AENAVFVEMCREHG-INFI-----GPN-------PDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       143 ~id~vip~~g~~--~e~~~~~~~l~~~g-i~~~-----g~~-------~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ++|.|+-..+..  .....+.+.+.+.| +..+     |.+       .........|....+++++.|+++
T Consensus        79 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~  150 (318)
T 2r6j_A           79 KVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPY  150 (318)
T ss_dssp             TCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred             CCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCCCe
Confidence            589998654321  11235566666666 5322     211       011122367888888999988875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.10  E-value=0.0016  Score=50.74  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|+|+|+|.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5689999999999999999999999999987554

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.76  E-value=0.011  Score=48.65  Aligned_cols=119  Identities=13%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++|||+|+ |.+|..+++.|.+.|++|++++.++..........-..+..       +..+.+.+.++.+  ++|.|+-.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~--~~d~vi~~   74 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVG-------DVLQAADVDKTVA--GQDAVIVL   74 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEES-------CTTSHHHHHHHHT--TCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEe-------cCCCHHHHHHHHc--CCCEEEEC
Confidence            68999995 88999999999999999999875543221100001112222       2345666766664  58988865


Q ss_pred             cCcCcc------c----HHHHHHHHHcCCc-eeC-CCH-----------HHHHHhCCHHHHHHHHHHCCCCC
Q 021372          151 YGFLAE------N----AVFVEMCREHGIN-FIG-PNP-----------DSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       151 ~g~~~e------~----~~~~~~l~~~gi~-~~g-~~~-----------~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .+....      +    ..+.+.+.+.++. ++. .+.           ........|....+++++.|+++
T Consensus        75 a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~~i~~  146 (206)
T 1hdo_A           75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKY  146 (206)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHTCSEE
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhHHHHHHHHHHHHHhCCCCE
Confidence            432211      1    2344555555542 221 111           11223455666667777777653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.76  E-value=0.0083  Score=47.90  Aligned_cols=37  Identities=16%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ..++|+|+|.|.+|..+++.|++.|++|++++.++..
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~   54 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA   54 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence            3578999999999999999999999999999766543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.63  E-value=0.008  Score=51.33  Aligned_cols=93  Identities=14%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      .+||++|||+| +|.+|..+++.|.+.| ++|++++.++......  .......+.     -+..+.+.+.++++  ++|
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--~~~~~~~~~-----~Dl~d~~~~~~~~~--~~D   90 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--YPTNSQIIM-----GDVLNHAALKQAMQ--GQD   90 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--CCTTEEEEE-----CCTTCHHHHHHHHT--TCS
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--ccCCcEEEE-----ecCCCHHHHHHHhc--CCC
Confidence            34578999999 6889999999999999 8999886554322111  111111121     12345667777664  589


Q ss_pred             EEeeccCcCccc---HHHHHHHHHcCC
Q 021372          146 MLHPGYGFLAEN---AVFVEMCREHGI  169 (313)
Q Consensus       146 ~vip~~g~~~e~---~~~~~~l~~~gi  169 (313)
                      +|+-..+.....   ..+.+.+.+.++
T Consensus        91 ~vv~~a~~~~~~~~~~~~~~~~~~~~~  117 (236)
T 3qvo_A           91 IVYANLTGEDLDIQANSVIAAMKACDV  117 (236)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCchhHHHHHHHHHHHHcCC
Confidence            998654321111   234555566664

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.55  E-value=0.019  Score=45.61  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=59.7

Q ss_pred             ccEEEEEcC----CHhHHHHHHHHHHcCCcEEEEecCC--Ccch---hh---hhh---cCceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVANR----GEIAVRVIRTAHEMGIPCVAVYSTI--DKDA---LH---VKL---ADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~----g~~a~~v~~al~~~G~~vi~v~~~~--~~~~---~~---~~~---ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      .++|.|+|.    |..|..+++.+.+.|++|+.+++..  ....   .+   ..+   .|-.+..-  +    ......+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~v--p----~~~v~~v   86 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFR--N----SEAAWGV   86 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCS--C----STHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEe--C----HHHHHHH
Confidence            467999998    5689999999999999988886554  2110   00   001   12122110  1    1234455


Q ss_pred             HHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHH
Q 021372          136 LSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSI  179 (313)
Q Consensus       136 ~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i  179 (313)
                      ++.+.+.++..++...+..  ...+.+.+++.|+.++||+---+
T Consensus        87 ~~~~~~~g~~~i~i~~~~~--~~~l~~~a~~~Gi~~igpnc~g~  128 (145)
T 2duw_A           87 AQEAIAIGAKTLWLQLGVI--NEQAAVLAREAGLSVVMDRCPAI  128 (145)
T ss_dssp             HHHHHHHTCCEEECCTTCC--CHHHHHHHHTTTCEEECSCCHHH
T ss_pred             HHHHHHcCCCEEEEcCChH--HHHHHHHHHHcCCEEEcCCeeeE
Confidence            5545556777766543322  45667777788888887664433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.52  E-value=0.0081  Score=46.42  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++|+|+|.|.+|..+++.|.+.|++|++++.++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~   38 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   38 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999975543

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.43  E-value=0.017  Score=45.09  Aligned_cols=95  Identities=11%  Similarity=0.129  Sum_probs=60.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++++|+|+|..|..+++.+++. |++++.+..+ +............+ +         . .+.+.++++++++|.|+.
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~-~~~~~g~~i~g~pV-~---------g-~~~l~~~~~~~~id~vii   71 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDD-DRKKHKTTMQGITI-Y---------R-PKYLERLIKKHCISTVLL   71 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECS-CGGGTTCEETTEEE-E---------C-GGGHHHHHHHHTCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEEC-CcccCCCEecCeEE-E---------C-HHHHHHHHHHCCCCEEEE
Confidence            57899999999999999999885 8888876533 22111111122112 1         1 346777888889998887


Q ss_pred             ccCcCcc--cHHHHHHHHHcCCcee-CCCHH
Q 021372          150 GYGFLAE--NAVFVEMCREHGINFI-GPNPD  177 (313)
Q Consensus       150 ~~g~~~e--~~~~~~~l~~~gi~~~-g~~~~  177 (313)
                      ..+....  ...+.+.+.+.|+.+. -|+..
T Consensus        72 a~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~  102 (141)
T 3nkl_A           72 AVPSASQVQKKVIIESLAKLHVEVLTIPNLD  102 (141)
T ss_dssp             CCTTSCHHHHHHHHHHHHTTTCEEEECCCHH
T ss_pred             eCCCCCHHHHHHHHHHHHHcCCeEEECCCHH
Confidence            6532221  1456677888888773 34433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.42  E-value=0.011  Score=49.89  Aligned_cols=139  Identities=12%  Similarity=0.033  Sum_probs=73.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      ++|+|+|.|..|..+++.|.+.|++|++++.++..........+..+..+      +..+.+.+.+ +.-.+.|+|+...
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~g------d~~~~~~l~~-a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHG------DGSHKEILRD-AEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEES------CTTSHHHHHH-HTCCTTCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEc------CCCCHHHHHh-cCcccCCEEEEec
Confidence            36999999999999999999999999999766543322112122223232      1233444433 3335689998765


Q ss_pred             CcCcccHHHHHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeec
Q 021372          152 GFLAENAVFVEMCRE-HGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKAT  229 (313)
Q Consensus       152 g~~~e~~~~~~~l~~-~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~  229 (313)
                      +....+......+.+ .+...+      +..+.|.. ..+.|+++|+...     +.....-....++.+-.|-+..-.
T Consensus        74 ~~d~~n~~~~~~a~~~~~~~~i------ia~~~~~~-~~~~l~~~G~d~v-----i~p~~~~~~~l~~~~~~~~~~~~~  140 (218)
T 3l4b_C           74 PRDEVNLFIAQLVMKDFGVKRV------VSLVNDPG-NMEIFKKMGITTV-----LNLTTLITNTVEALIFPDEFSSII  140 (218)
T ss_dssp             SCHHHHHHHHHHHHHTSCCCEE------EECCCSGG-GHHHHHHHTCEEC-----CCHHHHHHHHHHHHHCTTSCEECS
T ss_pred             CCcHHHHHHHHHHHHHcCCCeE------EEEEeCcc-hHHHHHHCCCCEE-----ECHHHHHHHHHHHHhccCCceEEE
Confidence            433233333343433 232211      12233332 3456688887632     111112233444555566555443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.41  E-value=0.0064  Score=57.00  Aligned_cols=74  Identities=14%  Similarity=0.040  Sum_probs=48.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|.|..|..+++.|++.|++|++++.++.............++-+       ..+.+. ++.+.-.+.|+|+..
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GD-------at~~~~-L~~agi~~A~~viv~   75 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGD-------ATRMDL-LESAGAAKAEVLINA   75 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESC-------TTCHHH-HHHTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcC-------CCCHHH-HHhcCCCccCEEEEC
Confidence            357999999999999999999999999999877664443333323333222       223333 333333457777765


Q ss_pred             cC
Q 021372          151 YG  152 (313)
Q Consensus       151 ~g  152 (313)
                      .+
T Consensus        76 ~~   77 (413)
T 3l9w_A           76 ID   77 (413)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.39  E-value=0.0079  Score=50.66  Aligned_cols=94  Identities=13%  Similarity=0.040  Sum_probs=55.6

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHH-HcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAH-EMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~-~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      +||++|||+| +|.+|..+++.|. +.|++|++++.++. ..............+.     -+..+.+.+.++++  ++|
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~--~~d   75 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIE-----GSFQNPGXLEQAVT--NAE   75 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEE-----CCTTCHHHHHHHHT--TCS
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEE-----CCCCCHHHHHHHHc--CCC
Confidence            4567899999 6889999999999 89999999865433 2111100111222121     12345667777663  689


Q ss_pred             EEeeccCcCc-ccHHHHHHHHHcCC
Q 021372          146 MLHPGYGFLA-ENAVFVEMCREHGI  169 (313)
Q Consensus       146 ~vip~~g~~~-e~~~~~~~l~~~gi  169 (313)
                      +|+-..+... +...+.+.+.+.+.
T Consensus        76 ~vv~~ag~~n~~~~~~~~~~~~~~~  100 (221)
T 3r6d_A           76 VVFVGAMESGSDMASIVKALSRXNI  100 (221)
T ss_dssp             EEEESCCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCChhHHHHHHHHHhcCC
Confidence            9986543210 12334455556664

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.21  E-value=0.016  Score=52.71  Aligned_cols=74  Identities=15%  Similarity=0.069  Sum_probs=47.3

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcC-CHHHHHHHHHhcC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYL-LIPNVLSAAISRG  143 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~-~~~~l~~~~~~~~  143 (313)
                      .+++++|||+| +|.+|..+++.|.+. |++|++++.............. +.+..       +.. +.+.+.++++  +
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~-------Dl~~d~~~~~~~~~--~   91 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEG-------DITINKEWVEYHVK--K   91 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEEC-------CTTTCHHHHHHHHH--H
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeC-------ccCCCHHHHHHHhc--c
Confidence            34568999999 688999999999998 9999999765433221111111 12222       133 5666666665  5


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|+|+-.
T Consensus        92 ~d~Vih~   98 (372)
T 3slg_A           92 CDVILPL   98 (372)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            8998853

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.20  E-value=0.018  Score=45.65  Aligned_cols=34  Identities=12%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|.|..|..+++.|.+.|++|++++.++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            5789999999999999999999999999997653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.14  E-value=0.038  Score=43.42  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=58.8

Q ss_pred             ccEEEEEcC----CHhHHHHHHHHHHcCCcEEEEecCCCcchh------hhh---hcCceEEccCCCCCCCcCCHHHHHH
Q 021372           71 QEKILVANR----GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL------HVK---LADESVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        71 ~~~ILIig~----g~~a~~v~~al~~~G~~vi~v~~~~~~~~~------~~~---~ad~~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      .++|.|+|.    |..|..+++.+.+.|++|+.+++......-      ...   -+|-.+..-|      ......+++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp------~~~v~~v~~   87 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVP------PKVGLQVAK   87 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSC------HHHHHHHHH
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeC------HHHHHHHHH
Confidence            578999998    778999999999999998888654322100      000   1122221110      122344444


Q ss_pred             HHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHH
Q 021372          138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS  178 (313)
Q Consensus       138 ~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~  178 (313)
                      .+.+.++..++...+.  +...+.+.+++.|+.++||+---
T Consensus        88 ~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~igpnc~g  126 (138)
T 1y81_A           88 EAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGRCIM  126 (138)
T ss_dssp             HHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSCCHH
T ss_pred             HHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEcCCcce
Confidence            4445667766654332  34566677777788888765433

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.13  E-value=0.038  Score=48.66  Aligned_cols=122  Identities=16%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcc---hhh---hhh-cCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKD---ALH---VKL-ADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~---~~~---~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      +++|||+|+ |.+|..+++.|.+.|++|+++..+....   ...   ..+ ......+.     .+..+.+.+.++++  
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~-----~D~~d~~~l~~~~~--   76 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH-----GSIDDHASLVEAVK--   76 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC-----CCTTCHHHHHHHHH--
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEE-----eccCCHHHHHHHHc--
Confidence            467999995 8899999999999999999886543211   000   011 11111121     12455677777765  


Q ss_pred             CCCEEeeccCcC--cccHHHHHHHHHcC-CceeCCCH------------HHHHHhCCHHHHHHHHHHCCCCC
Q 021372          143 GCTMLHPGYGFL--AENAVFVEMCREHG-INFIGPNP------------DSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       143 ~id~vip~~g~~--~e~~~~~~~l~~~g-i~~~g~~~------------~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ++|+|+-..+..  .....+.+++.+.| +..+-.+.            ........|....+++++.|+++
T Consensus        77 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~  148 (308)
T 1qyc_A           77 NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPY  148 (308)
T ss_dssp             TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcchhHHHHHHHHHHHHHhcCCCe
Confidence            589988654322  12245666677777 53221110            00112256777888888888765

>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}

Probab=96.07  E-value=0.0065  Score=57.65  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=51.5

Q ss_pred             CCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEE--eCCHHHHHHHHHHHHHHHHhcCCCCcEEEeecc
Q 021372          195 AGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL--AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYV  272 (313)
Q Consensus       195 ~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~--v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I  272 (313)
                      .=++..+||  .+.+.++.....+++. -+|+||..|.+|.|+.+  --+.+|+++..+++...      ...+++||++
T Consensus       339 ~il~~VpT~--~c~~~~~~~~vl~~l~-~lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i~~~------p~~yIaQe~v  409 (474)
T 3n6x_A          339 PILSNVPTY--QLSKADDLKYVLDNLA-ELVVKEVQGSGGYGMLVGPAASKQELEDFRQRILAN------PANYIAQPTL  409 (474)
T ss_dssp             CSSEECCCE--ETTSHHHHHHHHHSGG-GEEEEECCCE-----EEGGGCCHHHHHHHHHHHHHS------GGGEEEEECC
T ss_pred             hhccCCCce--ecCCHHHHHHHHhchh-heEEEecCCCCCCceEECCcCCHHHHHHHHHHHHhC------CCCEEEeecc
Confidence            345566676  7788888888888776 79999999999999988  45788888888877653      2569999999


Q ss_pred             CC
Q 021372          273 QN  274 (313)
Q Consensus       273 ~G  274 (313)
                      +-
T Consensus       410 ~l  411 (474)
T 3n6x_A          410 AL  411 (474)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.03  E-value=0.057  Score=42.67  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             ccEEEEEcC----CHhHHHHHHHHHHcCCcEEEEecCCCcchh------hhhh---cCceEEccCCCCCCCcCCHHHHHH
Q 021372           71 QEKILVANR----GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL------HVKL---ADESVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        71 ~~~ILIig~----g~~a~~v~~al~~~G~~vi~v~~~~~~~~~------~~~~---ad~~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      .++|.|+|.    +..|..+++.+++.|++++.+++......-      ...+   .|-.+..-|      ......+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp------~~~~~~vv~   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVK------PKLTMEYVE   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSC------HHHHHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeC------HHHHHHHHH
Confidence            468999997    457999999999999998777544321100      0000   121221100      122445555


Q ss_pred             HHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHH
Q 021372          138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPD  177 (313)
Q Consensus       138 ~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~  177 (313)
                      .+.+.++..++...+.  ....+.+.+++.|++++||+--
T Consensus        96 ~~~~~gi~~i~~~~g~--~~~~l~~~a~~~Gi~vvGpnc~  133 (144)
T 2d59_A           96 QAIKKGAKVVWFQYNT--YNREASKKADEAGLIIVANRCM  133 (144)
T ss_dssp             HHHHHTCSEEEECTTC--CCHHHHHHHHHTTCEEEESCCH
T ss_pred             HHHHcCCCEEEECCCc--hHHHHHHHHHHcCCEEEcCCch
Confidence            5556677776644333  2456777777888888876644

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.02  E-value=0.014  Score=50.77  Aligned_cols=79  Identities=11%  Similarity=0.056  Sum_probs=47.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      |.|+|||+| ++.+|+.+++.|.+.|.+|++++.+................+.  -+..+..+++.+++.+.+.  ++|.
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~~v~~~~~~~g~iDi   78 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFH--GDVADPLTLKKFVEYAMEKLQRIDV   78 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEE--CCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEE--ecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            568999999 5558999999999999999998755432222111122222222  1122233455555554432  6999


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++-.
T Consensus        79 LVNN   82 (247)
T 3ged_A           79 LVNN   82 (247)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.02  E-value=0.012  Score=48.20  Aligned_cols=36  Identities=11%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCc
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDK  106 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~  106 (313)
                      .++|+|+|.|.+|..+++.|++. |++|++++.++..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~   75 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEA   75 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHH
Confidence            56899999999999999999999 9999999766543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.00  E-value=0.023  Score=50.70  Aligned_cols=72  Identities=10%  Similarity=0.027  Sum_probs=48.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      |++|||+| +|.+|..+++.|.+.|++|++++.......  ..+..  ..+..       +..+.+.+.+++++.++|+|
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~d~v   71 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE--DAITEGAKFYNG-------DLRDKAFLRDVFTQENIEAV   71 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG--GGSCTTSEEEEC-------CTTCHHHHHHHHHHSCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch--hhcCCCcEEEEC-------CCCCHHHHHHHHhhcCCCEE
Confidence            36899999 688999999999999999999865433211  11111  12222       23456677777776689998


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +-.-
T Consensus        72 ih~a   75 (330)
T 2c20_A           72 MHFA   75 (330)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8654

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.96  E-value=0.021  Score=43.97  Aligned_cols=95  Identities=14%  Similarity=-0.028  Sum_probs=60.7

Q ss_pred             ccEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcchhhh---hh-----cCceEEccCCCCCCCcCCHHHHHHH
Q 021372           71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KL-----ADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        71 ~~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~~-----ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      .++|.|+|++.    .+..+++.|.+.|++|+.+++......-..   .+     .|-.+..-|      ......+++.
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p------~~~v~~~v~e   77 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYIN------PQNQLSEYNY   77 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSC------HHHHGGGHHH
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeC------HHHHHHHHHH
Confidence            57899999765    489999999999999999965433221100   01     222221110      1223445566


Q ss_pred             HHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeC
Q 021372          139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIG  173 (313)
Q Consensus       139 ~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g  173 (313)
                      |.+.++..|+...|+.  +..+.+.+++.|+.+++
T Consensus        78 ~~~~g~k~v~~~~G~~--~~e~~~~a~~~Girvv~  110 (122)
T 3ff4_A           78 ILSLKPKRVIFNPGTE--NEELEEILSENGIEPVI  110 (122)
T ss_dssp             HHHHCCSEEEECTTCC--CHHHHHHHHHTTCEEEE
T ss_pred             HHhcCCCEEEECCCCC--hHHHHHHHHHcCCeEEC
Confidence            6667888877665553  45777888889998886

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.96  E-value=0.0078  Score=52.68  Aligned_cols=37  Identities=16%  Similarity=0.119  Sum_probs=31.3

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +|+++|||+|+|.+|..+++.|.+.|++|++++.++.
T Consensus         3 ~m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            3 AMTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             --CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            3578999999999999999999999999999875543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.92  E-value=0.061  Score=47.56  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+++|||+| +|.+|..+++.|.+.|++|++++..+....  .. .-..+..       +.. .+.+.++++  ++|+|+
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~-~~~~~~~-------Dl~-~~~~~~~~~--~~d~Vi   67 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--IN-DYEYRVS-------DYT-LEDLINQLN--DVDAVV   67 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCEEEEC-------CCC-HHHHHHHTT--TCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--CC-ceEEEEc-------ccc-HHHHHHhhc--CCCEEE
Confidence            568999999 688999999999999999999875522111  11 1122222       133 455555554  789888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        68 h~a   70 (311)
T 3m2p_A           68 HLA   70 (311)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            543

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.86  E-value=0.032  Score=50.82  Aligned_cols=80  Identities=8%  Similarity=-0.137  Sum_probs=49.0

Q ss_pred             ccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhh--------cCceEEccCCCCCCCcCCHHHH
Q 021372           67 VTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKL--------ADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        67 ~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~--------ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      ...|+++|||+| +|.+|..+++.|.+.|++|++++.......  ....+        ......+.     .+..+.+.+
T Consensus        20 ~~~M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~Dl~d~~~~   94 (375)
T 1t2a_A           20 QGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY-----GDLTDSTCL   94 (375)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEE-----CCTTCHHHH
T ss_pred             HhhcCcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEE-----ccCCCHHHH
Confidence            333458899999 688999999999999999999875543210  00111        01111111     123456777


Q ss_pred             HHHHHhcCCCEEeecc
Q 021372          136 LSAAISRGCTMLHPGY  151 (313)
Q Consensus       136 ~~~~~~~~id~vip~~  151 (313)
                      .+++...++|+|+-.-
T Consensus        95 ~~~~~~~~~d~vih~A  110 (375)
T 1t2a_A           95 VKIINEVKPTEIYNLG  110 (375)
T ss_dssp             HHHHHHHCCSEEEECC
T ss_pred             HHHHHhcCCCEEEECC
Confidence            7777766899988654

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.86  E-value=0.033  Score=49.87  Aligned_cols=76  Identities=11%  Similarity=-0.007  Sum_probs=50.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh----cCceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~----ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      +++|||+| +|.+|..+++.|.+.|++|++++.......... .+    ......+.     .+..+.+.+.+++...++
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~   79 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHE-----TDVSDERALARIFDAHPI   79 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEEC-----CCTTCHHHHHHHHHHSCC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEE-----eecCCHHHHHHHHhccCC
Confidence            57899999 678999999999999999999865443222111 00    11111121     124567788888877789


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |.|+-.-
T Consensus        80 d~vih~A   86 (341)
T 3enk_A           80 TAAIHFA   86 (341)
T ss_dssp             CEEEECC
T ss_pred             cEEEECc
Confidence            9988543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.86  E-value=0.049  Score=47.91  Aligned_cols=119  Identities=17%  Similarity=0.250  Sum_probs=71.0

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC-Ccc---hhh---hhh---cCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI-DKD---ALH---VKL---ADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~-~~~---~~~---~~~---ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      +++|||+|+ |.+|..+++.|.+.|++|+++..+. ...   ...   ..+   .-+.+..       +..+.+.+.+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~-------D~~d~~~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEG-------DINDHETLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEEC-------CTTCHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEe-------CCCCHHHHHHHH
Confidence            467999994 8899999999999999999886554 100   000   001   1122222       245566777766


Q ss_pred             HhcCCCEEeeccCcCc--ccHHHHHHHHHcC-Ccee-----CCC--------HHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          140 ISRGCTMLHPGYGFLA--ENAVFVEMCREHG-INFI-----GPN--------PDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       140 ~~~~id~vip~~g~~~--e~~~~~~~l~~~g-i~~~-----g~~--------~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      +  ++|+|+-..+...  ....+.+++.+.| +..+     |.+        +.. .....|....+++++.|+++
T Consensus        75 ~--~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~-~~y~sK~~~e~~~~~~~i~~  147 (307)
T 2gas_A           75 K--QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVR-QVFEEKASIRRVIEAEGVPY  147 (307)
T ss_dssp             T--TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHH-HHHHHHHHHHHHHHHHTCCB
T ss_pred             h--CCCEEEECCcccccccHHHHHHHHHhcCCceEEeecccccCcccccCCCcch-hHHHHHHHHHHHHHHcCCCe
Confidence            4  6999986543221  1235566666676 5432     211        111 11256777888888888775

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.84  E-value=0.018  Score=49.24  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|||+|+|..|...++.|.+.|.+|++++++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            57899999999999999999999999999975543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.83  E-value=0.066  Score=47.53  Aligned_cols=120  Identities=13%  Similarity=0.170  Sum_probs=72.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC-Cc--chhhh------hhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI-DK--DALHV------KLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~-~~--~~~~~------~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      +++|||+| .|.+|..+++.|.+.|++|++++.++ ..  .....      ...-+.+..       ++.+.+.+.++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~-------D~~d~~~l~~a~~   76 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEG-------EMEEHEKMVSVLK   76 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEEC-------CTTCHHHHHHHHT
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEe-------cCCCHHHHHHHHc
Confidence            56799999 58899999999999999999987554 11  00000      001122222       2456677777764


Q ss_pred             hcCCCEEeeccCcC--cccHHHHHHHHHcC-Cce-e----CCCH-------HHHHHhCCHHHHHHHHHHCCCCC
Q 021372          141 SRGCTMLHPGYGFL--AENAVFVEMCREHG-INF-I----GPNP-------DSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       141 ~~~id~vip~~g~~--~e~~~~~~~l~~~g-i~~-~----g~~~-------~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                        ++|+|+-..+..  .....+.+.+.+.| +.. +    |.+.       ........|....+++++.|+++
T Consensus        77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~  148 (321)
T 3c1o_A           77 --QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPY  148 (321)
T ss_dssp             --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred             --CCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCe
Confidence              589998654321  12245666677777 532 2    2111       00112266888888888888774

>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*

Probab=95.80  E-value=0.014  Score=53.93  Aligned_cols=57  Identities=21%  Similarity=0.424  Sum_probs=41.4

Q ss_pred             CCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccC--------C-CcEEEEEEEEcC
Q 021372          221 GFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQ--------N-PRHIEFQVLADK  286 (313)
Q Consensus       221 g~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~--------G-~~e~~v~v~~d~  286 (313)
                      +.++|+||..|+.|+|++++++.+++.+.++..         ...++||+||+        | .-++++-++...
T Consensus       147 ~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~~---------~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts  212 (380)
T 3tig_A          147 GNVWIAKSSSGAKGEGILISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN  212 (380)
T ss_dssp             CCCEEEEESCC----CCBCCSCSHHHHHHHHHH---------TSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT
T ss_pred             CCeEEEeCCccCCCCCEEEeCCHHHHHHHHhcc---------CCcEEEEecccCceeecCCCceeEEEEEEEEcC
Confidence            578999999999999999999999988776531         36899999995        3 236677766653

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.77  E-value=0.03  Score=49.45  Aligned_cols=73  Identities=11%  Similarity=0.012  Sum_probs=50.1

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      |.++|||+|+ |.+|..+++.|.+.  |++|++++........  ...-..+..       +..+.+.+.+++++.++|+
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~--~~~~~~~~~-------D~~d~~~~~~~~~~~~~d~   71 (312)
T 2yy7_A            1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDV--VNSGPFEVV-------NALDFNQIEHLVEVHKITD   71 (312)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHH--HHSSCEEEC-------CTTCHHHHHHHHHHTTCCE
T ss_pred             CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccc--cCCCceEEe-------cCCCHHHHHHHHhhcCCCE
Confidence            4578999995 88999999999998  8999998754433211  111122322       2455677888877778999


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      |+-.-
T Consensus        72 vih~a   76 (312)
T 2yy7_A           72 IYLMA   76 (312)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            98653

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.73  E-value=0.023  Score=50.07  Aligned_cols=35  Identities=9%  Similarity=0.069  Sum_probs=31.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|+++|+|+|+|..|+..+..|.+.|++|++++..
T Consensus        13 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   47 (323)
T 3f8d_A           13 GEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET   47 (323)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCccCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            34679999999999999999999999999999754

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.68  E-value=0.095  Score=46.94  Aligned_cols=77  Identities=9%  Similarity=-0.022  Sum_probs=47.6

Q ss_pred             ccccEEEEEcC-CHhHHHHHHHHHHcC--CcEEEEecCCCcchh-h-hhhc--CceEEccCCCCCCCcCCHHHHHHHHHh
Q 021372           69 CRQEKILVANR-GEIAVRVIRTAHEMG--IPCVAVYSTIDKDAL-H-VKLA--DESVCIGEAPSSQSYLLIPNVLSAAIS  141 (313)
Q Consensus        69 ~~~~~ILIig~-g~~a~~v~~al~~~G--~~vi~v~~~~~~~~~-~-~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~  141 (313)
                      +++++|||+|+ |.+|..+++.|.+.|  ++|++++........ . ..+.  .....+.     .+..+.+.+.++++.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~   96 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVK-----GEIQNGELLEHVIKE   96 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEE-----CCTTCHHHHHHHHHH
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEE-----cCCCCHHHHHHHHhh
Confidence            34678999995 889999999999999  666666543211110 0 0010  1111111     124567788888887


Q ss_pred             cCCCEEeec
Q 021372          142 RGCTMLHPG  150 (313)
Q Consensus       142 ~~id~vip~  150 (313)
                      .++|+|+-.
T Consensus        97 ~~~d~Vih~  105 (346)
T 4egb_A           97 RDVQVIVNF  105 (346)
T ss_dssp             HTCCEEEEC
T ss_pred             cCCCEEEEC
Confidence            789999854

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.66  E-value=0.032  Score=50.07  Aligned_cols=75  Identities=15%  Similarity=0.009  Sum_probs=49.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc-------chhhhhh----cC--ceEEccCCCCCCCcCCHHHH
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK-------DALHVKL----AD--ESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~-------~~~~~~~----ad--~~~~v~~~~~~~~~~~~~~l  135 (313)
                      |+++|||+| +|.+|..+++.|.+.|++|++++.....       ......+    ..  ..+..       +..+.+.+
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-------D~~~~~~~   73 (348)
T 1ek6_A            1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM-------DILDQGAL   73 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEEC-------CTTCHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEEC-------CCCCHHHH
Confidence            467899999 6889999999999999999998643221       1110111    11  22222       23456677


Q ss_pred             HHHHHhcCCCEEeecc
Q 021372          136 LSAAISRGCTMLHPGY  151 (313)
Q Consensus       136 ~~~~~~~~id~vip~~  151 (313)
                      .+++++.++|+|+-.-
T Consensus        74 ~~~~~~~~~d~vih~A   89 (348)
T 1ek6_A           74 QRLFKKYSFMAVIHFA   89 (348)
T ss_dssp             HHHHHHCCEEEEEECC
T ss_pred             HHHHHhcCCCEEEECC
Confidence            7777666899888654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.66  E-value=0.018  Score=48.39  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=47.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++|||+| +|.+|..+++.|.+.|++|++++.++....   .+......+.     .+..+.+.+.++++  ++|+|+-
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~-----~Dl~d~~~~~~~~~--~~d~vi~   73 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIK---IENEHLKVKK-----ADVSSLDEVCEVCK--GADAVIS   73 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCC---CCCTTEEEEC-----CCTTCHHHHHHHHT--TCSEEEE
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccch---hccCceEEEE-----ecCCCHHHHHHHhc--CCCEEEE
Confidence            57899999 577899999999999999999965443221   1112222221     12456677777764  5899886


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus        74 ~a~   76 (227)
T 3dhn_A           74 AFN   76 (227)
T ss_dssp             CCC
T ss_pred             eCc
Confidence            543

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.63  E-value=0.075  Score=46.84  Aligned_cols=122  Identities=19%  Similarity=0.243  Sum_probs=72.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc--hhhh---hh-cCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHV---KL-ADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~--~~~~---~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      +++|||+| .|.+|..+++.|.+.|++|+++..+....  ....   .+ ......+.     .+..+.+.+.++++  +
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~-----~D~~d~~~l~~~~~--~   76 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE-----ASLDDHQRLVDALK--Q   76 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEEC-----CCSSCHHHHHHHHT--T
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEe-----CCCCCHHHHHHHHh--C
Confidence            46799999 58899999999999999999986553211  1000   01 11111121     12456677777764  6


Q ss_pred             CCEEeeccCcCc------ccHHHHHHHHHcC-Cce-e----CCCHH--------HHHHhCCHHHHHHHHHHCCCCC
Q 021372          144 CTMLHPGYGFLA------ENAVFVEMCREHG-INF-I----GPNPD--------SIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       144 id~vip~~g~~~------e~~~~~~~l~~~g-i~~-~----g~~~~--------~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      +|.|+-..+...      ....+.+++.+.| +.- +    |.+..        .......|....+++++.|+++
T Consensus        77 ~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~~p~~~~y~sK~~~e~~~~~~g~~~  152 (313)
T 1qyd_A           77 VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPY  152 (313)
T ss_dssp             CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred             CCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEEecCCcCCccccccCCCCCcchHHHHHHHHHHHHhcCCCe
Confidence            999886543221      1135667777777 542 2    21100        0111256888888888888775

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.62  E-value=0.046  Score=48.84  Aligned_cols=71  Identities=15%  Similarity=0.014  Sum_probs=45.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++|||+| +|.+|..+++.|.+.|++|++++.+...........-+.+..       +..+.+.+.++++  ++|+|+-.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~-------Dl~d~~~~~~~~~--~~d~vih~   84 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVA-------EMLDHAGLERALR--GLDGVIFS   84 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEEC-------CTTCHHHHHHHTT--TCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEe-------cCCCHHHHHHHHc--CCCEEEEC
Confidence            4899999 588999999999999999999876544321111001122222       2345666666654  58988865


Q ss_pred             c
Q 021372          151 Y  151 (313)
Q Consensus       151 ~  151 (313)
                      -
T Consensus        85 a   85 (342)
T 2x4g_A           85 A   85 (342)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=95.58  E-value=0.049  Score=42.89  Aligned_cols=100  Identities=16%  Similarity=0.080  Sum_probs=58.1

Q ss_pred             ccEEEEEcC----CHhHHHHHHHHHHcCCcEEEEecC--CCcch---hh---hhh---cCceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVANR----GEIAVRVIRTAHEMGIPCVAVYST--IDKDA---LH---VKL---ADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~----g~~a~~v~~al~~~G~~vi~v~~~--~~~~~---~~---~~~---ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      .++|.|+|.    +..|..+++.+.+.|++|+.+++.  .....   .+   ..+   .|-.+..-|      ......+
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp------~~~~~~v   86 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP------PSALMDH   86 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC------HHHHTTT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeC------HHHHHHH
Confidence            578999997    457999999999999998888654  22110   00   000   121221111      0112333


Q ss_pred             HHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHH
Q 021372          136 LSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDS  178 (313)
Q Consensus       136 ~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~  178 (313)
                      ++.+.+.++..++...++.  ...+.+.+++.|+.++||+---
T Consensus        87 ~~~~~~~gi~~i~~~~g~~--~~~~~~~a~~~Gir~vgpnc~g  127 (140)
T 1iuk_A           87 LPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVADRCLM  127 (140)
T ss_dssp             HHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEESCCHH
T ss_pred             HHHHHHcCCCEEEEcCCcC--HHHHHHHHHHcCCEEEcCCccc
Confidence            4445556677666544332  3567777788888888866443

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=95.55  E-value=0.022  Score=48.32  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.++|||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   39 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDE   39 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            467899999 66789999999999999999886543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.55  E-value=0.053  Score=49.62  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=47.3

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++++|||+|+ |.+|..+++.|.+.|++|++++.+...........-..+..       +..+.+.+.++++  ++|+|+
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~-------Dl~d~~~~~~~~~--~~d~Vi   98 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLV-------DLRVMENCLKVTE--GVDHVF   98 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEEC-------CTTSHHHHHHHHT--TCSEEE
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEEC-------CCCCHHHHHHHhC--CCCEEE
Confidence            3578999995 88999999999999999999875543221111111122222       2345666666663  799888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        99 h~A  101 (379)
T 2c5a_A           99 NLA  101 (379)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            653

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.51  E-value=0.051  Score=49.58  Aligned_cols=77  Identities=4%  Similarity=-0.209  Sum_probs=48.7

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhhc-------C-ceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA-------D-ESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~a-------d-~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      |+++|||+|+ |.+|..+++.|.+.|++|++++.......  ....+.       . ....+.     .+..+.+.+.++
T Consensus        27 M~k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~  101 (381)
T 1n7h_A           27 PRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY-----ADLTDASSLRRW  101 (381)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEE-----CCTTCHHHHHHH
T ss_pred             hCCeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEE-----CCCCCHHHHHHH
Confidence            4578999995 88999999999999999999875443210  001110       0 111111     123456677777


Q ss_pred             HHhcCCCEEeecc
Q 021372          139 AISRGCTMLHPGY  151 (313)
Q Consensus       139 ~~~~~id~vip~~  151 (313)
                      ++..++|+|+-.-
T Consensus       102 ~~~~~~d~Vih~A  114 (381)
T 1n7h_A          102 IDVIKPDEVYNLA  114 (381)
T ss_dssp             HHHHCCSEEEECC
T ss_pred             HHhcCCCEEEECC
Confidence            7766899988654

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=95.51  E-value=0.021  Score=49.34  Aligned_cols=37  Identities=11%  Similarity=0.069  Sum_probs=30.7

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ....+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   43 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDK   43 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            33468999999 55689999999999999999987554

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.49  E-value=0.07  Score=46.01  Aligned_cols=37  Identities=11%  Similarity=0.052  Sum_probs=30.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+...
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   42 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   42 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH
Confidence            357899999 5668999999999999999998765443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.49  E-value=0.013  Score=51.36  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +++|||+|+|.+|..+++.|.+.|++|++++....
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999999999999999999999999976543

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.48  E-value=0.025  Score=49.40  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|.|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4568899999 5668999999999999999998654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.46  E-value=0.033  Score=50.19  Aligned_cols=75  Identities=7%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hc--------CceEEccCCCCCCCcCCHHHHHHHH
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LA--------DESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~a--------d~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      ++++|||+| +|.+|..+++.|.+.|++|++++........... +.        .....+.     .+..+.+.+.+++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~   98 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIE-----GDIRDLTTCEQVM   98 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEE-----CCTTCHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEE-----ccCCCHHHHHHHh
Confidence            468999999 5889999999999999999998764432211111 10        1111121     1244566676666


Q ss_pred             HhcCCCEEeecc
Q 021372          140 ISRGCTMLHPGY  151 (313)
Q Consensus       140 ~~~~id~vip~~  151 (313)
                      .  ++|+|+-.-
T Consensus        99 ~--~~d~Vih~A  108 (351)
T 3ruf_A           99 K--GVDHVLHQA  108 (351)
T ss_dssp             T--TCSEEEECC
T ss_pred             c--CCCEEEECC
Confidence            4  799998553

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.39  E-value=0.037  Score=48.14  Aligned_cols=79  Identities=9%  Similarity=0.050  Sum_probs=46.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhc--CCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISR--GCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id  145 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.......... .-..+..|    ..+...++.+.+.+.+.  ++|
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D----v~~~~~v~~~~~~~~~~~g~iD  101 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGD----FSCETGIMAFIDLLKTQTSSLR  101 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECC----TTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECC----CCCHHHHHHHHHHHHHhcCCCC
Confidence            367899999 56689999999999999999997665432211111 11223222    11222334444433332  699


Q ss_pred             EEeeccC
Q 021372          146 MLHPGYG  152 (313)
Q Consensus       146 ~vip~~g  152 (313)
                      +++-.-+
T Consensus       102 ~lv~nAg  108 (260)
T 3gem_A          102 AVVHNAS  108 (260)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9986543

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.33  E-value=0.032  Score=48.20  Aligned_cols=81  Identities=11%  Similarity=0.119  Sum_probs=45.3

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCT  145 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id  145 (313)
                      ....+++||+| ++.+|..+++.|.+.|++|++++.....  ....+......+.-  +..+..+++.+.+.+.+. ++|
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~--D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED--VVADLGDRARFAAA--DVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH--HHHHTCTTEEEEEC--CTTCHHHHHHHHHHHHHHSCEE
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH--HHHhcCCceEEEEC--CCCCHHHHHHHHHHHHHhCCCC
Confidence            33468899999 5668999999999999999998653221  11222222222211  111222334444443332 689


Q ss_pred             EEeeccC
Q 021372          146 MLHPGYG  152 (313)
Q Consensus       146 ~vip~~g  152 (313)
                      .++-.-+
T Consensus        82 ~lv~nAg   88 (257)
T 3tl3_A           82 IVVNCAG   88 (257)
T ss_dssp             EEEECGG
T ss_pred             EEEECCC
Confidence            8886543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.33  E-value=0.081  Score=47.91  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=31.0

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHH--cCCcEEEEecCC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHE--MGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~--~G~~vi~v~~~~  104 (313)
                      .+.+++|||+| +|.+|..+++.|.+  .|++|++++...
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~   46 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFR   46 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCC
Confidence            33468999998 67899999999999  999999987543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.31  E-value=0.085  Score=49.11  Aligned_cols=124  Identities=12%  Similarity=0.077  Sum_probs=73.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC---cEEEEecCCCcchhh-hhhc------CceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI---PCVAVYSTIDKDALH-VKLA------DESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~---~vi~v~~~~~~~~~~-~~~a------d~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |++|+|+|+|.+|..+++.+.+.|.   .|++++.+....... ..+.      -..+.++       ..+.+.+.++++
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D-------~~d~~~l~~~l~   73 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVD-------ADSIEELVALIN   73 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECC-------TTCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEec-------CCCHHHHHHHHH
Confidence            3689999999999999999999983   777776543322111 1111      1122222       345667777777


Q ss_pred             hcCCCEEeeccCcCcccHHHHHHHHHcCCcee-CCCHHHHH--H--hCCHHHHHHHHHHCCCCCCCC
Q 021372          141 SRGCTMLHPGYGFLAENAVFVEMCREHGINFI-GPNPDSIR--I--MGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       141 ~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~-g~~~~~i~--~--~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      +.++|+|+...+.. ....+.+.+.+.|..++ ..+.....  .  ......+.+.++++|+.....
T Consensus        74 ~~~~DvVin~ag~~-~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g  139 (405)
T 4ina_A           74 EVKPQIVLNIALPY-QDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLG  139 (405)
T ss_dssp             HHCCSEEEECSCGG-GHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEEC
T ss_pred             hhCCCEEEECCCcc-cChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEc
Confidence            77899998664422 23456666777888876 11111000  0  000125667788888876544

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.29  E-value=0.071  Score=47.73  Aligned_cols=76  Identities=13%  Similarity=0.010  Sum_probs=48.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +++|||+| +|.+|..+++.|.+.|++|++++..................+.     .+..+.+.+.++++..++|+|+-
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~D~vih   95 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVE-----GSIADHALVNQLIGDLQPDAVVH   95 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEE-----CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEE-----EeCCCHHHHHHHHhccCCcEEEE
Confidence            57899999 6889999999999999999998754322111000001111121     12345667777776667999886


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      .-
T Consensus        96 ~A   97 (333)
T 2q1w_A           96 TA   97 (333)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=95.29  E-value=0.037  Score=47.80  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            357899999 566899999999999999999876544

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.28  E-value=0.023  Score=49.61  Aligned_cols=60  Identities=7%  Similarity=0.043  Sum_probs=45.3

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+++|||+| +|.+|..+++.|.+.|++|++++..                      ..+..+.+.+.+++.+.++|+|+
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------------~~D~~d~~~~~~~~~~~~~d~vi   61 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------------LLDITNISQVQQVVQEIRPHIII   61 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence            334899999 5889999999999999999998531                      01234567777887777899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        62 ~~a   64 (287)
T 3sc6_A           62 HCA   64 (287)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.25  E-value=0.16  Score=44.56  Aligned_cols=120  Identities=19%  Similarity=0.193  Sum_probs=69.0

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcC-CcEEEEecCCCcchh-hhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTIDKDAL-HVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~-~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      +++|||+|+ |.+|..+++.|.+.| ++|++++.++..... .... .-+.+..       +..+.+.+.++++  ++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~-------D~~d~~~l~~~~~--~~d~   75 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQG-------DQDDQVIMELALN--GAYA   75 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEEC-------CTTCHHHHHHHHT--TCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEe-------cCCCHHHHHHHHh--cCCE
Confidence            578999995 889999999999999 999998765543211 0111 1122222       2455667777664  5899


Q ss_pred             EeeccCcCcc-----c----HHHHHHHHHcCCc-eeCCCHHHH----------HHhCCHHHHHHHHHHCCCCC
Q 021372          147 LHPGYGFLAE-----N----AVFVEMCREHGIN-FIGPNPDSI----------RIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       147 vip~~g~~~e-----~----~~~~~~l~~~gi~-~~g~~~~~i----------~~~~DK~~~~~~l~~~Gip~  199 (313)
                      |+-..+....     +    ..+.+.+.+.|+. ++..+....          .....|....+++++.|+++
T Consensus        76 vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~  148 (299)
T 2wm3_A           76 TFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPM  148 (299)
T ss_dssp             EEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHHTCCE
T ss_pred             EEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHHHHHHHCCCCE
Confidence            8865432110     0    1344555566653 221221111          12245667777777777764

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.24  E-value=0.028  Score=48.82  Aligned_cols=70  Identities=14%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++++|||+| +|.+|..+++.|.+.|++|++++.+.....   ......+..+       ..+.+.+.+++.  ++|+|+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---~~~~~~~~~D-------l~d~~~~~~~~~--~~D~vi   69 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---GPNEECVQCD-------LADANAVNAMVA--GCDGIV   69 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---CTTEEEEECC-------TTCHHHHHHHHT--TCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---CCCCEEEEcC-------CCCHHHHHHHHc--CCCEEE
Confidence            367899999 677999999999999999999875543222   0111222222       345667777664  699988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        70 ~~A   72 (267)
T 3rft_A           70 HLG   72 (267)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.23  E-value=0.066  Score=47.42  Aligned_cols=73  Identities=8%  Similarity=0.016  Sum_probs=48.9

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +.+++|||+| +|.+|..+++.|.+.|++|++++..... ..   +.-..+..       +..+.+.+.++++..++|+|
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---l~~~~~~~-------Dl~d~~~~~~~~~~~~~d~v   78 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---PNVEMISL-------DIMDSQRVKKVISDIKPDYI   78 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---TTEEEEEC-------CTTCHHHHHHHHHHHCCSEE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---ceeeEEEC-------CCCCHHHHHHHHHhcCCCEE
Confidence            3468899999 6779999999999999999998755433 11   11112222       23456777777776679999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-+
T Consensus        79 ih~A~   83 (321)
T 2pk3_A           79 FHLAA   83 (321)
T ss_dssp             EECCS
T ss_pred             EEcCc
Confidence            86543

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.21  E-value=0.02  Score=48.03  Aligned_cols=35  Identities=9%  Similarity=0.031  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |...|+|+|+|+.|+..+..|++.|++|++++..+
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            44569999999999999999999999999997543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=95.21  E-value=0.28  Score=44.96  Aligned_cols=76  Identities=17%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ccEEEEE--cCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVA--NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIi--g~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ..+|||+  |+|.+|...++.++.+|.+|++++.++........+ +|..+..    ...  ...+.+.++....++|++
T Consensus       171 g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~----~~~--~~~~~v~~~t~~~g~d~v  244 (379)
T 3iup_A          171 GHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNA----ASP--TFMQDLTEALVSTGATIA  244 (379)
T ss_dssp             TCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEET----TST--THHHHHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeC----CCh--HHHHHHHHHhcCCCceEE
Confidence            5679999  788899999999999999999887554433333333 3444422    111  235677777777789999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..+
T Consensus       245 ~d~~g  249 (379)
T 3iup_A          245 FDATG  249 (379)
T ss_dssp             EESCE
T ss_pred             EECCC
Confidence            96543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.20  E-value=0.058  Score=48.41  Aligned_cols=65  Identities=17%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|||+|+ |.+|..+++.|.+.|++|++++.....      ..-..+..       +..+.+.+.+++.  ++|+|+-
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~-------Dl~d~~~~~~~~~--~~d~vih   83 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVG-------SLEDGQALSDAIM--GVSAVLH   83 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEES-------CTTCHHHHHHHHT--TCSEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEec-------CcCCHHHHHHHHh--CCCEEEE
Confidence            678999995 889999999999999999998755432      11122222       2345666666664  6888875


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      .
T Consensus        84 ~   84 (347)
T 4id9_A           84 L   84 (347)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.17  E-value=0.15  Score=44.34  Aligned_cols=90  Identities=10%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++|||+| .|.+|..+++.|.+. |++|+++..++..........-+.+..       +..+.+.+.++++  ++|.|+-
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~-------D~~d~~~l~~~~~--~~d~vi~   71 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQL-------DYFNQESMVEAFK--GMDTVVF   71 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEEC-------CTTCHHHHHHHTT--TCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEc-------CCCCHHHHHHHHh--CCCEEEE
Confidence            3699999 588999999999998 999999876544322111111122222       2455667766663  6898886


Q ss_pred             ccCcCccc-------HHHHHHHHHcCCc
Q 021372          150 GYGFLAEN-------AVFVEMCREHGIN  170 (313)
Q Consensus       150 ~~g~~~e~-------~~~~~~l~~~gi~  170 (313)
                      ..+.....       ..+.+.+.+.|+.
T Consensus        72 ~a~~~~~~~~~~~~~~~l~~aa~~~gv~   99 (289)
T 3e48_A           72 IPSIIHPSFKRIPEVENLVYAAKQSGVA   99 (289)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             eCCCCccchhhHHHHHHHHHHHHHcCCC
Confidence            54322111       2345666666753

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.13  E-value=0.026  Score=50.05  Aligned_cols=67  Identities=10%  Similarity=-0.012  Sum_probs=39.1

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |.++|||+|+ |.+|..+++.|.+.|++|++++.....       . ..+..+       ..+.+.+.++++..++|+|+
T Consensus         1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~-~~~~~D-------l~d~~~~~~~~~~~~~d~vi   65 (315)
T 2ydy_A            1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-------P-KFEQVN-------LLDSNAVHHIIHDFQPHVIV   65 (315)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------------CHHHHHHHCCSEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-------C-CeEEec-------CCCHHHHHHHHHhhCCCEEE
Confidence            4578999995 889999999999999999998633221       0 122111       22334455555555789888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        66 h~A   68 (315)
T 2ydy_A           66 HCA   68 (315)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            643

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.11  E-value=0.082  Score=47.08  Aligned_cols=77  Identities=13%  Similarity=0.002  Sum_probs=48.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhh--cCceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      ++++|||+| +|.+|..+++.|.+.|++|++++.......  ....+  ......+.     .+..+.+.+.++++..++
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYED-----GDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEE-----CCTTCHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEE-----CCCCCHHHHHHHHHHcCC
Confidence            478899999 577999999999999999999875543211  00111  11111111     123456777777776689


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |+|+-.-
T Consensus        88 d~Vih~A   94 (335)
T 1rpn_A           88 QEVYNLA   94 (335)
T ss_dssp             SEEEECC
T ss_pred             CEEEECc
Confidence            9988653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.06  E-value=0.074  Score=45.74  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=45.7

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCT  145 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id  145 (313)
                      .|.|++||+| ++.+|..+++.|.+.|++|++++.+.....      ...+.++    ..+..+++.+.+.+.+.  ++|
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~------~~~~~~d----~~d~~~v~~~~~~~~~~~g~iD   89 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA------DHSFTIK----DSGEEEIKSVIEKINSKSIKVD   89 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS------SEEEECS----CSSHHHHHHHHHHHHTTTCCEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------ccceEEE----eCCHHHHHHHHHHHHHHcCCCC
Confidence            3578999999 566899999999999999999876543222      2233332    11222344444444332  588


Q ss_pred             EEeeccC
Q 021372          146 MLHPGYG  152 (313)
Q Consensus       146 ~vip~~g  152 (313)
                      +++-.-+
T Consensus        90 ~li~~Ag   96 (251)
T 3orf_A           90 TFVCAAG   96 (251)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            8886543

>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}

Probab=95.05  E-value=0.14  Score=46.62  Aligned_cols=101  Identities=12%  Similarity=0.017  Sum_probs=52.7

Q ss_pred             cccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCCCcchhhhhhc-CceEEccCCCCC-----CCcCC-------
Q 021372           70 RQEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSS-----QSYLL-------  131 (313)
Q Consensus        70 ~~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~-----~~~~~-------  131 (313)
                      |++||+|.|+|.-     ++.++++|++.|++|..+.+............ -....++.....     .....       
T Consensus         1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   80 (365)
T 3s2u_A            1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKS   80 (365)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHH
T ss_pred             CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHH
Confidence            6789999998753     67899999999999998864332111111111 122223211000     00011       


Q ss_pred             HHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372          132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       132 ~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ...+..++++.++|+|+...+..+-...++  ....|+|++
T Consensus        81 ~~~~~~~l~~~~PDvVi~~g~~~s~p~~la--A~~~~iP~v  119 (365)
T 3s2u_A           81 LFQALRVIRQLRPVCVLGLGGYVTGPGGLA--ARLNGVPLV  119 (365)
T ss_dssp             HHHHHHHHHHHCCSEEEECSSSTHHHHHHH--HHHTTCCEE
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcchHHHHHH--HHHcCCCEE
Confidence            123345678899999996544332222222  234688876

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.04  E-value=0.37  Score=43.00  Aligned_cols=146  Identities=12%  Similarity=0.016  Sum_probs=79.3

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH-----HhcCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA-----ISRGC  144 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~-----~~~~i  144 (313)
                      |.||.|+|. |.++...++++++.+.+++.+.+ .+....  ..+ +.+     +...-|.+.+.+++.+     ...++
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d-~~~~~~--~~~-~~~-----~~~~~~~~~~~ll~~~~~l~~~~~~v   73 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLD-PATNVG--LVD-SFF-----PEAEFFTEPEAFEAYLEDLRDRGEGV   73 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEEC-SSCCCG--GGG-GTC-----TTCEEESCHHHHHHHHHHHHHTTCCC
T ss_pred             ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEc-CCHHHH--HHH-hhC-----CCCceeCCHHHHHHHhhhhcccCCCC
Confidence            578999997 67899999999999988887663 322211  111 111     1111245677777554     45789


Q ss_pred             CEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHHHhCCc
Q 021372          145 TMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLADELGFP  223 (313)
Q Consensus       145 d~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~~lg~P  223 (313)
                      |+|+.... ...+...+..+.+.|.+++.--|-+ ....+=..+.+++++.|+..-..+. +.......+.+..++-|-+
T Consensus        74 D~V~I~tP-~~~H~~~~~~al~aGkhVl~EKPla-~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~gG~i  151 (312)
T 3o9z_A           74 DYLSIASP-NHLHYPQIRMALRLGANALSEKPLV-LWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLGQEKGA  151 (312)
T ss_dssp             SEEEECSC-GGGHHHHHHHHHHTTCEEEECSSSC-SCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTCCSC
T ss_pred             cEEEECCC-chhhHHHHHHHHHCCCeEEEECCCC-CCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHHcCCCE
Confidence            99987642 2233555566667898876311111 0111223355667788876533221 1222233444444433444


Q ss_pred             EEEe
Q 021372          224 VMIK  227 (313)
Q Consensus       224 ~VvK  227 (313)
                      .-+.
T Consensus       152 ~~v~  155 (312)
T 3o9z_A          152 KDVV  155 (312)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=95.03  E-value=0.035  Score=48.01  Aligned_cols=35  Identities=11%  Similarity=0.066  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.02  E-value=0.11  Score=46.50  Aligned_cols=75  Identities=13%  Similarity=-0.038  Sum_probs=48.2

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||+|+ |.+|..+++.|.+.|++|++++........ ...+ .....+.     .+..+.+.+.+++.+.++|+|+
T Consensus        20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l-~~v~~~~-----~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV-AGLSVIE-----GSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC-TTEEEEE-----CCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc-CCceEEE-----eeCCCHHHHHHHHhhcCCCEEE
Confidence            568999994 889999999999999999998754322110 0111 1111111     1234566677777655899988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        94 h~A   96 (330)
T 2pzm_A           94 HSA   96 (330)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            654

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.97  E-value=0.098  Score=47.12  Aligned_cols=76  Identities=11%  Similarity=-0.063  Sum_probs=49.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh---hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .++|||+| +|.+|..+++.|.+.|++|++++...........   .......+.     .+..+.+.+.+++...++|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEI-----GDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEE-----CCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEE-----ccccCHHHHHHHHHhcCCCE
Confidence            47899999 6889999999999999999998755432211111   011111111     12345667777777668999


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      |+-.-
T Consensus        84 vih~A   88 (357)
T 1rkx_A           84 VFHMA   88 (357)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            98654

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.95  E-value=0.079  Score=45.01  Aligned_cols=75  Identities=21%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hc-CceEEccCCCCCCCcCCHHHHHHHHHhc-CCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LA-DESVCIGEAPSSQSYLLIPNVLSAAISR-GCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id  145 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+......... +. .+.+..       +..+.+.+.+++.+. ++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCV-------DLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEEC-------CTTCHHHHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEE-------eCCCHHHHHHHHHHcCCCC
Confidence            357899999 4679999999999999999988654322111111 11 122222       234566666666544 589


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      .|+-.-
T Consensus        79 ~vi~~A   84 (244)
T 3d3w_A           79 LLVNNA   84 (244)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.95  E-value=0.091  Score=46.48  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=29.6

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+|++   .+|+.+++.|.+.|++|++++.+.
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            5789999975   789999999999999999987553

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=94.94  E-value=0.055  Score=47.17  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ....|++||+| ++.+|..+++.|.+.|++|++++.+...
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   47 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETD   47 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            33468899999 5668999999999999999998765543

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.93  E-value=0.11  Score=46.51  Aligned_cols=75  Identities=17%  Similarity=0.005  Sum_probs=47.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hhhhhc--C--ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LHVKLA--D--ESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~~~~a--d--~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      |++|||+| +|.+|..+++.|.+.|++|++++.......  ....+.  .  ..+..       +..+.+.+.++++..+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~-------Dl~d~~~~~~~~~~~~   73 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHG-------DIRNKNDVTRLITKYM   73 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEEC-------CTTCHHHHHHHHHHHC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEc-------CCCCHHHHHHHHhccC
Confidence            36899999 688999999999999999999864321111  011111  1  12222       2345667777776667


Q ss_pred             CCEEeeccC
Q 021372          144 CTMLHPGYG  152 (313)
Q Consensus       144 id~vip~~g  152 (313)
                      +|+|+-.-+
T Consensus        74 ~d~vih~A~   82 (347)
T 1orr_A           74 PDSCFHLAG   82 (347)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCc
Confidence            999986543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=94.92  E-value=0.08  Score=46.18  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +++++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~   40 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE   40 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468899999 567899999999999999999876543

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.91  E-value=0.071  Score=46.01  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=29.4

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++++||+| ++.+|..+++.|.+.|++|++++..
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS   40 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence            3468999999 5668999999999999999988644

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=94.89  E-value=0.068  Score=45.56  Aligned_cols=35  Identities=9%  Similarity=0.002  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~   36 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGLAIATRFLARGDRVAALDLSA   36 (250)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56789999999999999999986543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.89  E-value=0.096  Score=43.73  Aligned_cols=86  Identities=7%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCC-HHHHHHHHHhcCCCEEeec
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL-IPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~-~~~l~~~~~~~~id~vip~  150 (313)
                      ||||+| +|.+|..+++.|.+.|++|++++.++......    .....+.     -+..+ .+.+.++++  ++|+|+-.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----~~~~~~~-----~D~~d~~~~~~~~~~--~~d~vi~~   70 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----NNVKAVH-----FDVDWTPEEMAKQLH--GMDAIINV   70 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----TTEEEEE-----CCTTSCHHHHHTTTT--TCSEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----CCceEEE-----ecccCCHHHHHHHHc--CCCEEEEC
Confidence            799999 78899999999999999999997654322211    1111121     12344 566666654  69999876


Q ss_pred             cCcCcc-----c----HHHHHHHHHcCC
Q 021372          151 YGFLAE-----N----AVFVEMCREHGI  169 (313)
Q Consensus       151 ~g~~~e-----~----~~~~~~l~~~gi  169 (313)
                      .+...+     +    ..+.+.+.+.++
T Consensus        71 ag~~~~~~~~~n~~~~~~l~~a~~~~~~   98 (219)
T 3dqp_A           71 SGSGGKSLLKVDLYGAVKLMQAAEKAEV   98 (219)
T ss_dssp             CCCTTSSCCCCCCHHHHHHHHHHHHTTC
T ss_pred             CcCCCCCcEeEeHHHHHHHHHHHHHhCC
Confidence            542221     1    245566666665

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=94.87  E-value=0.086  Score=46.34  Aligned_cols=37  Identities=11%  Similarity=0.235  Sum_probs=31.0

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ...+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            3468899999 566899999999999999999876544

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.85  E-value=0.073  Score=46.73  Aligned_cols=40  Identities=13%  Similarity=0.084  Sum_probs=30.6

Q ss_pred             CcCcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           63 GALKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        63 ~~~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +.++...+.|++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        17 n~~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r   57 (281)
T 3v2h_A           17 NLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGF   57 (281)
T ss_dssp             -----CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             chhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3455666778999999 566899999999999999998864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.84  E-value=0.066  Score=45.89  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=29.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999 56689999999999999999986543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.84  E-value=0.079  Score=44.82  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   36 (242)
T 1uay_A            1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRR   36 (242)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCc
Confidence            357899999 56789999999999999999987554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.80  E-value=0.088  Score=44.63  Aligned_cols=35  Identities=9%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcC--CcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMG--IPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G--~~vi~v~~~~~  105 (313)
                      ++++||+| ++.+|..+++.|.+.|  ++|++++.+..
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~   40 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE   40 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence            57899999 5668999999999999  99999876543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=94.79  E-value=0.11  Score=44.44  Aligned_cols=33  Identities=12%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            57899999 5678999999999999999998765

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.77  E-value=0.12  Score=43.51  Aligned_cols=37  Identities=16%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+.+++++|+|+|..|+.+++.+++.+++++.+-++
T Consensus         8 ~~~~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd   44 (220)
T 4ea9_A            8 ASLAIGGVVIIGGGGHAKVVIESLRACGETVAAIVDA   44 (220)
T ss_dssp             CCCCSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             cccCCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeC
Confidence            3344678999999999999999999999998876533

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.74  E-value=0.083  Score=45.03  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++++||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999986543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=94.73  E-value=0.043  Score=47.83  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHh--cC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAIS--RG  143 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~--~~  143 (313)
                      ....|++||+| ++.+|..+++.|.+.|++|++++.+....... ..+......+.  -+..+...++.+.+.+.+  .+
T Consensus        24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~Dv~d~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFS--ANLSDRKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEE--CCTTSHHHHHHHHHHHHHHHTS
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEE--eecCCHHHHHHHHHHHHHHcCC
Confidence            33468899999 56689999999999999999986543322111 11122222221  111122234444443333  26


Q ss_pred             CCEEeeccC
Q 021372          144 CTMLHPGYG  152 (313)
Q Consensus       144 id~vip~~g  152 (313)
                      +|.++-.-+
T Consensus       102 iD~lvnnAg  110 (266)
T 3grp_A          102 IDILVNNAG  110 (266)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999986543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.71  E-value=0.061  Score=47.64  Aligned_cols=61  Identities=13%  Similarity=0.143  Sum_probs=44.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +++|||+| .|.+|..+++.|.+.|++|+++.....              .       +..+.+.+.+++++.++|+|+-
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~--------------~-------D~~d~~~~~~~~~~~~~d~vih   61 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------L-------NLLDSRAVHDFFASERIDQVYL   61 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------C-------CTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc--------------C-------CccCHHHHHHHHHhcCCCEEEE
Confidence            57899999 588999999999999999888643210              1       2344567777777668999886


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      .-+
T Consensus        62 ~a~   64 (321)
T 1e6u_A           62 AAA   64 (321)
T ss_dssp             CCC
T ss_pred             cCe
Confidence            543

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=94.70  E-value=0.076  Score=46.27  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   43 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   43 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=94.69  E-value=0.097  Score=45.29  Aligned_cols=35  Identities=14%  Similarity=0.021  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.67  E-value=0.32  Score=41.98  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             EEEEEcC-CHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ||+|+|+ |.+|..+++.+.+. |++++.+....+....... -+|..+.+.      ........+..|.++++++|+.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT------~p~a~~~~~~~a~~~g~~~Vig   75 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFT------HPDVVMGNLEFLIDNGIHAVVG   75 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECS------CTTTHHHHHHHHHHTTCEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEcc------ChHHHHHHHHHHHHcCCCEEEc
Confidence            7999995 99999999999876 9998866533221111111 234333221      1123556667777778887776


Q ss_pred             ccCcC
Q 021372          150 GYGFL  154 (313)
Q Consensus       150 ~~g~~  154 (313)
                      +.|+.
T Consensus        76 TTG~~   80 (245)
T 1p9l_A           76 TTGFT   80 (245)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            55433

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=94.67  E-value=0.068  Score=46.32  Aligned_cols=34  Identities=24%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+   +.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            478999996   5799999999999999999987554

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.67  E-value=0.094  Score=44.47  Aligned_cols=74  Identities=20%  Similarity=0.122  Sum_probs=47.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcC-ceEEccCCCCCCCcCCHHHHHHHHHhc-CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~  146 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+......... ... +.+..       +..+.+.+.+++.+. ++|+
T Consensus         7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCV-------DLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEEC-------CTTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEe-------cCCCHHHHHHHHHHcCCCCE
Confidence            57899999 5778999999999999999998654322111111 111 22222       234566666666544 4898


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      |+-.-
T Consensus        80 vi~~A   84 (244)
T 1cyd_A           80 LVNNA   84 (244)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=94.66  E-value=0.09  Score=45.97  Aligned_cols=36  Identities=17%  Similarity=0.107  Sum_probs=30.3

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ...|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNP   45 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3468899999 56689999999999999999986543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.65  E-value=0.11  Score=47.57  Aligned_cols=117  Identities=8%  Similarity=0.029  Sum_probs=72.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ++||||+|+|..|..+++.|.+ .++|.+++.+..........+ ..+.++       ..+.+.+.++++  +.|+|+..
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~-~~~~~d-------~~d~~~l~~~~~--~~DvVi~~   84 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFA-TPLKVD-------ASNFDKLVEVMK--EFELVIGA   84 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTS-EEEECC-------TTCHHHHHHHHT--TCSEEEEC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccC-CcEEEe-------cCCHHHHHHHHh--CCCEEEEe
Confidence            4579999999999999999966 578887764433222211111 222232       345778888775  47888876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS  203 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~  203 (313)
                      .+.. -...+++.+.+.|..++-.+...    ..=..+.+.++++|+...+..
T Consensus        85 ~p~~-~~~~v~~~~~~~g~~yvD~s~~~----~~~~~l~~~a~~~g~~~i~~~  132 (365)
T 3abi_A           85 LPGF-LGFKSIKAAIKSKVDMVDVSFMP----ENPLELRDEAEKAQVTIVFDA  132 (365)
T ss_dssp             CCGG-GHHHHHHHHHHHTCEEEECCCCS----SCGGGGHHHHHHTTCEEECCC
T ss_pred             cCCc-ccchHHHHHHhcCcceEeeeccc----hhhhhhhhhhccCCceeeecC
Confidence            5322 24567788888898886322111    111234567788888766653

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.62  E-value=0.069  Score=45.45  Aligned_cols=68  Identities=10%  Similarity=-0.067  Sum_probs=45.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~v  147 (313)
                      |++|||+| +|.+|..+++.|.+.|++|++++.+......       .  +     ..+..+.+.+.+++++.  ++|+|
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~--~-----~~D~~~~~~~~~~~~~~~~~~d~v   66 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------D--L-----STPGGRETAVAAVLDRCGGVLDGL   66 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------C--T-----TSHHHHHHHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------c--c-----cCCcccHHHHHHHHHHcCCCccEE
Confidence            46899999 5779999999999999999998755432210       0  1     11123345555555554  79999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-+
T Consensus        67 i~~Ag   71 (255)
T 2dkn_A           67 VCCAG   71 (255)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            86544

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.62  E-value=0.17  Score=43.68  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            357899999 566899999999999999999875543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.61  E-value=0.097  Score=46.33  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=31.4

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ....|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   76 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPR   76 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            33468899999 566899999999999999999876544

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.60  E-value=0.26  Score=44.29  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +++|.|+|-|.+|.. +++.|+++|++|.+.|........ ......-.+..+.        +.+.+.+    .++|.|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~--------~~~~l~~----~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGF--------DAAQLDE----FKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESC--------CGGGGGS----CCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCC--------CHHHcCC----CCCCEEE
Confidence            578999999999996 889999999999999865432211 1111122232321        1111110    3578888


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHH--hCC---------------HHHHHHHHHHCCCCC
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRI--MGD---------------KSTARETMKNAGVPT  199 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~--~~D---------------K~~~~~~l~~~Gip~  199 (313)
                      ...+...++..+ ..+.+.|+++++ ..+.+..  ..+               +....++|++.|.++
T Consensus        72 ~Spgi~~~~p~~-~~a~~~gi~v~~-~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~  137 (326)
T 3eag_A           72 IGNVAKRGMDVV-EAILNLGLPYIS-GPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAP  137 (326)
T ss_dssp             ECTTCCTTCHHH-HHHHHTTCCEEE-HHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             ECCCcCCCCHHH-HHHHHcCCcEEe-HHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence            766544444444 345578999883 5554432  222               355667888888754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.59  E-value=0.093  Score=44.42  Aligned_cols=72  Identities=11%  Similarity=-0.005  Sum_probs=46.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      ++++|||+| +|.+|..+++.|.+.  |++|++++.++..... ....-..+..       +..+.+.+.++.+  ++|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~-------D~~d~~~~~~~~~--~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK-IGGEADVFIG-------DITDADSINPAFQ--GIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH-TTCCTTEEEC-------CTTSHHHHHHHHT--TCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh-cCCCeeEEEe-------cCCCHHHHHHHHc--CCCE
Confidence            467899999 678999999999999  8999998654322111 0001122322       2345667777664  5898


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      |+-.-
T Consensus        73 vi~~a   77 (253)
T 1xq6_A           73 LVILT   77 (253)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.58  E-value=0.095  Score=45.42  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        28 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   63 (260)
T 3un1_A           28 QKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIK   63 (260)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            57899999 566899999999999999999876543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.56  E-value=0.17  Score=47.99  Aligned_cols=125  Identities=10%  Similarity=0.042  Sum_probs=68.3

Q ss_pred             CcccccccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           65 LKVTCRQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        65 ~~~~~~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      ......+++|+|+|+|.+|..+++.|.+. |++|++++.+............ ..+.++       ..+.+.+.+++.  
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D-------~~d~~~l~~~l~--   87 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLD-------VTDDSALDKVLA--   87 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECC-------TTCHHHHHHHHH--
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEe-------cCCHHHHHHHHc--
Confidence            34444578999999999999999999998 7888887654322111100001 122222       334556666554  


Q ss_pred             CCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCC
Q 021372          143 GCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGS  203 (313)
Q Consensus       143 ~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~  203 (313)
                      ++|+|+...+.. ....+...+.+.|..++-.+..    ..+...+.+.++++|+.+....
T Consensus        88 ~~DvVIn~tp~~-~~~~v~~a~l~~g~~vvd~~~~----~p~~~~Ll~~Ak~aGv~~i~g~  143 (467)
T 2axq_A           88 DNDVVISLIPYT-FHPNVVKSAIRTKTDVVTSSYI----SPALRELEPEIVKAGITVMNEI  143 (467)
T ss_dssp             TSSEEEECSCGG-GHHHHHHHHHHHTCEEEECSCC----CHHHHHHHHHHHHHTCEEECSC
T ss_pred             CCCEEEECCchh-hhHHHHHHHHhcCCEEEEeecC----CHHHHHHHHHHHHcCCEEEecC
Confidence            699998765322 1223444444567666532210    0012445567788888766553

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.54  E-value=0.18  Score=43.33  Aligned_cols=35  Identities=6%  Similarity=0.013  Sum_probs=30.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~   47 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   47 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            57899999 666899999999999999999876544

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=94.53  E-value=0.08  Score=45.44  Aligned_cols=35  Identities=11%  Similarity=0.067  Sum_probs=29.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            368899999 56689999999999999999886443

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=94.53  E-value=0.12  Score=45.60  Aligned_cols=72  Identities=11%  Similarity=0.026  Sum_probs=45.8

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +|||+| +|.+|..+++.|.+.|++|++++.......  ..+......+.     .+..+.+.+.+++++.++|.|+-.-
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~--~~~~~~~~~~~-----~Dl~~~~~~~~~~~~~~~d~vi~~a   74 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR--ENVPKGVPFFR-----VDLRDKEGVERAFREFRPTHVSHQA   74 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG--GGSCTTCCEEC-----CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch--hhcccCeEEEE-----CCCCCHHHHHHHHHhcCCCEEEECc
Confidence            799999 578999999999999999998864222111  11111111111     1234566677777666899888643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.52  E-value=0.21  Score=43.96  Aligned_cols=35  Identities=14%  Similarity=0.175  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            357899999 56689999999999999999987554

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.50  E-value=0.11  Score=44.66  Aligned_cols=36  Identities=14%  Similarity=0.145  Sum_probs=30.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368899999 556899999999999999999876544

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.49  E-value=0.093  Score=45.32  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQV   41 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence            57899999 56689999999999999999986543

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.43  E-value=0.13  Score=43.79  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   45 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGARLILIDREA   45 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56789999999999999999986543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.43  E-value=0.088  Score=44.88  Aligned_cols=34  Identities=24%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        14 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (247)
T 3i1j_A           14 GRVILVTGAARGIGAAAARAYAAHGASVVLLGRTE   48 (247)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCH
Confidence            67899999 56689999999999999999986543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.43  E-value=0.072  Score=47.66  Aligned_cols=37  Identities=8%  Similarity=-0.046  Sum_probs=30.5

Q ss_pred             ccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           67 VTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        67 ~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .....|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            334468899999 5668999999999999999998654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.42  E-value=0.11  Score=44.77  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             cccEEEEEcCC-H--hHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRG-E--IAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g-~--~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+|++ .  +|..+++.|.+.|++|++++.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            36789999953 3  8999999999999999988654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=94.40  E-value=0.067  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.182  Sum_probs=30.0

Q ss_pred             cccEEEEEcC-C-HhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR-G-EIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~-g-~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+|+ | .+|..+++.|.+.|++|++++.+.
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            3678999997 5 599999999999999999986544

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.40  E-value=0.11  Score=46.27  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=49.1

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhc--CceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLA--DESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      .++|||+|+ |.+|..+++.|.+.|++|++++.+......  ...+.  .....+.     .+..+.+.+.++++..++|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIH-----MDLLEFSNIIRTIEKVQPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECC-----CCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEE-----CCCCCHHHHHHHHHhcCCC
Confidence            478999995 889999999999999999998654432110  01110  1122221     1244566777777766899


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      +|+-.-
T Consensus        78 ~vih~A   83 (345)
T 2z1m_A           78 EVYNLA   83 (345)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=94.38  E-value=0.12  Score=44.50  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDV   46 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            47899999 56689999999999999999986543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.37  E-value=0.11  Score=44.97  Aligned_cols=35  Identities=14%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTV   45 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            468899999 45589999999999999999986543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=94.36  E-value=0.11  Score=44.80  Aligned_cols=35  Identities=11%  Similarity=0.007  Sum_probs=29.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |.|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         1 m~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (256)
T 1geg_A            1 MKKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   36 (256)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            457899999 56689999999999999999886543

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=94.35  E-value=0.21  Score=42.74  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=29.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   41 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAF   41 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCch
Confidence            57899999 56789999999999999999987554

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.34  E-value=0.053  Score=47.15  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=29.8

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+|+   +.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            3578999995   6789999999999999999886544

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=94.33  E-value=0.095  Score=45.94  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 55689999999999999999987543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.33  E-value=0.18  Score=43.92  Aligned_cols=35  Identities=17%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|+|||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        14 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   49 (269)
T 3vtz_A           14 DKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEK   49 (269)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            68899999 566899999999999999999875543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.31  E-value=0.22  Score=43.49  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   67 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSD   67 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999 566899999999999999999876543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.29  E-value=0.14  Score=45.99  Aligned_cols=34  Identities=15%  Similarity=0.168  Sum_probs=29.7

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|||+|+ |.+|..+++.|.+.|++|++++...
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            578999995 8899999999999999999987543

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=94.27  E-value=0.1  Score=44.73  Aligned_cols=34  Identities=6%  Similarity=-0.023  Sum_probs=29.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            57899999 66689999999999999999987554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=94.26  E-value=0.19  Score=47.97  Aligned_cols=112  Identities=14%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|-|.+|.. +++.|+++|++|.+.|....+.........-.+..+.        +.+.+      .++|.|+.
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--------~~~~~------~~~d~vV~   87 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHH--------RPENV------LDASVVVV   87 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSC--------CGGGG------TTCSEEEE
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCC--------CHHHc------CCCCEEEE
Confidence            589999998888986 8999999999999987544322221221222232321        11111      24888887


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHH-HhCC---------------HHHHHHHHHHCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIR-IMGD---------------KSTARETMKNAGVP  198 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~-~~~D---------------K~~~~~~l~~~Gip  198 (313)
                      ..+.-.++..+. ...+.|+++++ ..+.+. .+.+               +.....+|++.|.+
T Consensus        88 Spgi~~~~p~~~-~a~~~gi~v~~-~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~  150 (494)
T 4hv4_A           88 STAISADNPEIV-AAREARIPVIR-RAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLD  150 (494)
T ss_dssp             CTTSCTTCHHHH-HHHHTTCCEEE-HHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHH-HHHHCCCCEEc-HHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCC
Confidence            665444454443 34577999883 455433 3332               34555677888874

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=94.23  E-value=0.14  Score=43.67  Aligned_cols=76  Identities=11%  Similarity=-0.112  Sum_probs=46.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML  147 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v  147 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.........+. ....+.     -+..+.+.+.++.++. ++|.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~-----~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYP-GIQTRV-----LDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGST-TEEEEE-----CCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhcc-CceEEE-----eeCCCHHHHHHHHHHhCCCCEE
Confidence            357899999 567899999999999999999865432211111111 111121     1134455565555554 69998


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +-.-
T Consensus        79 v~~A   82 (246)
T 2ag5_A           79 FNVA   82 (246)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8643

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=94.21  E-value=0.24  Score=42.86  Aligned_cols=35  Identities=9%  Similarity=0.072  Sum_probs=29.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   43 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP   43 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            57899999 566899999999999999999875543

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.18  E-value=0.22  Score=43.56  Aligned_cols=81  Identities=12%  Similarity=0.093  Sum_probs=47.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC-Ccchhh-hh---hcCceEEccCCCCCCCcCCHHHHHHHHHhc-
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI-DKDALH-VK---LADESVCIGEAPSSQSYLLIPNVLSAAISR-  142 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~-~~~~~~-~~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-  142 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++... ...... ..   .......+.  -+..+...++.+++.+.+. 
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLR--ADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEE--CCTTSGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE--ecCCCHHHHHHHHHHHHHHc
Confidence            357899999 56689999999999999999986322 111100 01   111222221  1122334466666655443 


Q ss_pred             -CCCEEeeccC
Q 021372          143 -GCTMLHPGYG  152 (313)
Q Consensus       143 -~id~vip~~g  152 (313)
                       ++|.++-.-+
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence             7999886543

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=94.17  E-value=0.21  Score=42.38  Aligned_cols=75  Identities=12%  Similarity=0.058  Sum_probs=46.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh-c-CCCE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-R-GCTM  146 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~-~id~  146 (313)
                      |.|++||+| ++.+|..+++.|.+.|++|++++.+....  ...+.-..+..|  .  .+ .+++.+.+.+.+ . ++|.
T Consensus         1 ~~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~D--~--~~-~~~~~~~~~~~~~~g~id~   73 (239)
T 2ekp_A            1 MERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA--AQSLGAVPLPTD--L--EK-DDPKGLVKRALEALGGLHV   73 (239)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--HHHHTCEEEECC--T--TT-SCHHHHHHHHHHHHTSCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhhCcEEEecC--C--ch-HHHHHHHHHHHHHcCCCCE
Confidence            357899999 56789999999999999999987554331  111111222222  1  12 345555554432 2 6999


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      ++..-
T Consensus        74 lv~~A   78 (239)
T 2ekp_A           74 LVHAA   78 (239)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.17  E-value=0.1  Score=45.40  Aligned_cols=35  Identities=6%  Similarity=-0.014  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   40 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56789999999999999999986543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.15  E-value=0.13  Score=44.71  Aligned_cols=81  Identities=9%  Similarity=0.012  Sum_probs=49.4

Q ss_pred             ccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh----cC-ceEEccCCCCCCCcCCHHHHHHHH
Q 021372           67 VTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL----AD-ESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        67 ~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~----ad-~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      +....|++||+| ++.+|..+++.|.+.|++|++++.+........ .+    .+ ....+.     .+..+.+.+.++.
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-----~D~~~~~~~~~~~   80 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVV-----ADLGTEQGCQDVI   80 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEE-----CCTTSHHHHHHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEe-----cCCCCHHHHHHHH
Confidence            333468899999 566899999999999999999865433211111 00    01 111111     1234456666666


Q ss_pred             Hhc-CCCEEeeccC
Q 021372          140 ISR-GCTMLHPGYG  152 (313)
Q Consensus       140 ~~~-~id~vip~~g  152 (313)
                      ++. ++|.++-.-+
T Consensus        81 ~~~g~id~lv~nAg   94 (267)
T 3t4x_A           81 EKYPKVDILINNLG   94 (267)
T ss_dssp             HHCCCCSEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence            665 6999886543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.15  E-value=0.05  Score=46.31  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++|+|+|.|..|..+++.|.+.|+ |++++.++.......  .+..+..+      +..+.+.+.+. .-.+.|.|+..
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~g------d~~~~~~l~~a-~i~~ad~vi~~   78 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHG------DPTRVSDLEKA-NVRGARAVIVD   78 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEES------CTTCHHHHHHT-TCTTCSEEEEC
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEc------CCCCHHHHHhc-CcchhcEEEEc
Confidence            5789999999999999999999999 998865544322111  22222222      12334433332 22467888865


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP  198 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip  198 (313)
                      .+....+......+.+.+..     ...+..+.|... .+.|+++|+.
T Consensus        79 ~~~d~~n~~~~~~a~~~~~~-----~~iia~~~~~~~-~~~l~~~G~~  120 (234)
T 2aef_A           79 LESDSETIHCILGIRKIDES-----VRIIAEAERYEN-IEQLRMAGAD  120 (234)
T ss_dssp             CSCHHHHHHHHHHHHHHCSS-----SEEEEECSSGGG-HHHHHHHTCS
T ss_pred             CCCcHHHHHHHHHHHHHCCC-----CeEEEEECCHhH-HHHHHHCCCC
Confidence            43222223344445554432     111122333322 2455667765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.14  E-value=0.12  Score=44.35  Aligned_cols=35  Identities=11%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRV   41 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            357899999 56689999999999999999986543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.11  E-value=0.21  Score=43.11  Aligned_cols=74  Identities=12%  Similarity=-0.027  Sum_probs=47.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~vi  148 (313)
                      .|++||+| ++.+|+.+++.|.+.|.+|++.+.+.+....  ........+.-     +..+.+.+.++..+. ++|.++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~--~~~~~~~~~~~-----Dv~~~~~v~~~~~~~g~iDiLV   83 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA--PRHPRIRREEL-----DITDSQRLQRLFEALPRLDVLV   83 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS--CCCTTEEEEEC-----CTTCHHHHHHHHHHCSCCSEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh--hhcCCeEEEEe-----cCCCHHHHHHHHHhcCCCCEEE
Confidence            58899999 5558999999999999999999766543321  11122222211     123445565655555 489888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      ..-
T Consensus        84 NNA   86 (242)
T 4b79_A           84 NNA   86 (242)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            643

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.11  E-value=0.057  Score=47.66  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             cccccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           68 TCRQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|+++|||+|+ |.+|..+++.|.+.|++|++++...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCC
Confidence            345789999995 8899999999999999999986543

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=94.11  E-value=0.1  Score=44.33  Aligned_cols=35  Identities=11%  Similarity=0.083  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   41 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSG   41 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999 66789999999999999999986543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.10  E-value=0.044  Score=46.46  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.++|||+|+ |.+|..+++.|.+.|++|++++.+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            4678999995 88999999999999999999976544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.08  E-value=0.097  Score=45.33  Aligned_cols=35  Identities=9%  Similarity=0.100  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   44 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRST   44 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            468899999 56689999999999999999986543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.06  E-value=0.13  Score=44.44  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             cccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           66 KVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        66 ~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      +...|.+++||+| ++.+|..+++.|.+.|++|+++.
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~   57 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHY   57 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            3344578899999 56689999999999999997765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.05  E-value=0.056  Score=51.27  Aligned_cols=74  Identities=18%  Similarity=0.033  Sum_probs=50.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .|||+|+|+|..|..+++.|.+.|++|++++.+++.........|.....+      +..+.+ +++.+.-.+.|+++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~G------d~~~~~-~L~~Agi~~ad~~ia~   75 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNG------HASHPD-VLHEAGAQDADMLVAV   75 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEES------CTTCHH-HHHHHTTTTCSEEEEC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEE------cCCCHH-HHHhcCCCcCCEEEEE
Confidence            468999999999999999999999999999877654433222234334343      123344 4444444668988865


Q ss_pred             c
Q 021372          151 Y  151 (313)
Q Consensus       151 ~  151 (313)
                      .
T Consensus        76 t   76 (461)
T 4g65_A           76 T   76 (461)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.02  E-value=0.068  Score=46.02  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSK   41 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            367899999 56689999999999999999986543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.02  E-value=0.12  Score=44.13  Aligned_cols=77  Identities=14%  Similarity=0.052  Sum_probs=49.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v  147 (313)
                      .++|||+| ++.+|..+++.|.+.|++|++++.+........ .+.+....+.     -+..+.+.+.+++++. ++|++
T Consensus        14 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           14 GKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEV-----CNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEE-----CCTTSHHHHHHHHHTCSCCSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEE-----cCCCCHHHHHHHHHhcCCCCEE
Confidence            68899999 566899999999999999999875433221111 1122222111     1234566777777655 69998


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-+
T Consensus        89 i~~Ag   93 (249)
T 3f9i_A           89 VCNAG   93 (249)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            86543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=94.01  E-value=0.032  Score=47.26  Aligned_cols=90  Identities=10%  Similarity=0.049  Sum_probs=57.4

Q ss_pred             ccEEEEEcCCHhHHHHHHH--HHHcCCcEEEEe-cCCCcchhhh-hhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRT--AHEMGIPCVAVY-STIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~a--l~~~G~~vi~v~-~~~~~~~~~~-~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      ..+++|+|+|..|..+++.  ..+.|++++.+- .++.+ .... ....-.+           ...+.+.++++++++|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~-kiG~~~i~GvpV-----------~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSND-LVGKTTEDGIPV-----------YGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTST-TTTCBCTTCCBE-----------EEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchh-ccCceeECCeEE-----------eCHHHHHHHHHHcCCCE
Confidence            5789999999999999987  345788887554 34330 1112 2222222           11356788888899998


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCceeC
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFIG  173 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~g  173 (313)
                      ++.+.... .....++.+.+.|++-+.
T Consensus       152 vIIAvPs~-~aq~v~d~lv~~GIk~I~  177 (212)
T 3keo_A          152 AILTVPST-EAQEVADILVKAGIKGIL  177 (212)
T ss_dssp             EEECSCGG-GHHHHHHHHHHHTCCEEE
T ss_pred             EEEecCch-hHHHHHHHHHHcCCCEEE
Confidence            88764221 234677788888887764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.96  E-value=0.2  Score=42.92  Aligned_cols=35  Identities=20%  Similarity=0.065  Sum_probs=29.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~   41 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDR   41 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999 66789999999999999999986543

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.96  E-value=0.099  Score=45.53  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.|++||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            367899999 56689999999999999999986543

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.94  E-value=0.17  Score=43.81  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=93.93  E-value=0.12  Score=44.64  Aligned_cols=35  Identities=6%  Similarity=-0.010  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNR   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.93  E-value=0.17  Score=43.23  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   47 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDE   47 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56789999999999999999986543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.92  E-value=0.07  Score=46.38  Aligned_cols=34  Identities=3%  Similarity=-0.063  Sum_probs=31.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |+.+|+|+|+|+.|+..+..|++.|++|++++..
T Consensus         1 m~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   34 (297)
T 3fbs_A            1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAG   34 (297)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4678999999999999999999999999999754

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=93.92  E-value=0.14  Score=42.05  Aligned_cols=61  Identities=11%  Similarity=0.060  Sum_probs=42.3

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEEee
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTMLHP  149 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~vip  149 (313)
                      +++||+| +|.+|..+++.|. .|++|++++.+..           .+..+       ..+.+.+.+++.+. ++|.|+-
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D-------~~~~~~~~~~~~~~~~~d~vi~   64 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVD-------ITNIDSIKKMYEQVGKVDAIVS   64 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECC-------TTCHHHHHHHHHHHCCEEEEEE
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeee-------cCCHHHHHHHHHHhCCCCEEEE
Confidence            3699999 6678999999999 9999999865432           23232       33455565555543 5888886


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      .-
T Consensus        65 ~a   66 (202)
T 3d7l_A           65 AT   66 (202)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.91  E-value=0.28  Score=46.17  Aligned_cols=114  Identities=16%  Similarity=0.172  Sum_probs=66.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcc---hhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKD---ALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~---~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++|+|+|.|..|..+++.|+++|++|.+.|......   ........-.+..+..+        +.++    ..++|.|
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~--------~~~~----~~~~d~v   76 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHP--------LELL----DEDFCYM   76 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCC--------GGGG----GSCEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCCh--------HHhh----cCCCCEE
Confidence            5899999999999999999999999999997643211   11111112223232110        0111    1127888


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh-----------CCHHH----HHHHHHHCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIM-----------GDKST----ARETMKNAGVP  198 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~-----------~DK~~----~~~~l~~~Gip  198 (313)
                      +...+....+..+ ....+.|++++ ...+.....           +-|..    ...+|++.|.+
T Consensus        77 v~spgi~~~~p~~-~~a~~~gi~v~-~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~  140 (451)
T 3lk7_A           77 IKNPGIPYNNPMV-KKALEKQIPVL-TEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQR  140 (451)
T ss_dssp             EECTTSCTTSHHH-HHHHHTTCCEE-CHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCC
T ss_pred             EECCcCCCCChhH-HHHHHCCCcEE-eHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCC
Confidence            8766544444443 44457788887 355544332           23444    44667888864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.91  E-value=0.17  Score=47.78  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|||+|+|..|.+.++.|.+.|.+|++++++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~   46 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC
Confidence            57899999999999999999999999999976543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=93.90  E-value=0.12  Score=45.39  Aligned_cols=77  Identities=13%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v  147 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+........ .+......+.     -+..+.+.+.+++.+. ++|.+
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRE-----LDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEE-----CCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEE-----cCCCCHHHHHHHHHhcCCCCEE
Confidence            57899999 566899999999999999999865433221111 1111222221     1234567777777665 68888


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-|
T Consensus        91 v~nAg   95 (291)
T 3rd5_A           91 INNAG   95 (291)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            86543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.90  E-value=0.061  Score=45.59  Aligned_cols=35  Identities=11%  Similarity=0.217  Sum_probs=30.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCC--cEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGI--PCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~--~vi~v~~~~~  105 (313)
                      .++|||+| +|.+|..+++.|.+.|+  +|++++.++.
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~   55 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   55 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC
Confidence            47899999 67899999999999999  9999876544

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.89  E-value=0.13  Score=44.83  Aligned_cols=35  Identities=6%  Similarity=0.052  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   40 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=93.89  E-value=0.21  Score=45.45  Aligned_cols=149  Identities=13%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHH-H-cCCcEEEEec-CCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAH-E-MGIPCVAVYS-TIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~-~-~G~~vi~v~~-~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      ..||+.||.|+|.|.+|...++++. + .|++++.+.+ ++...   ..++...- +.    ...|.+.+.++   ...+
T Consensus        19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~---~~~a~~~g-~~----~~~~~~~~~ll---~~~~   87 (357)
T 3ec7_A           19 FQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA---QAALDKYA-IE----AKDYNDYHDLI---NDKD   87 (357)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH---HHHHHHHT-CC----CEEESSHHHHH---HCTT
T ss_pred             cCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH---HHHHHHhC-CC----CeeeCCHHHHh---cCCC
Confidence            3345679999999999999999998 4 4788775542 32221   11221110 00    00134444444   4567


Q ss_pred             CCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC--CCCCcccCCCHHHHHHHHHH--
Q 021372          144 CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT--VPGSDGLLQSTEEAVKLADE--  219 (313)
Q Consensus       144 id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~--p~~~~~~~~~~~~~~~~~~~--  219 (313)
                      +|+|+.... .......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..  ..+..+.......+.+.+++  
T Consensus        88 ~D~V~i~tp-~~~h~~~~~~al~aGk~Vl~EKPla~-~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~g~  165 (357)
T 3ec7_A           88 VEVVIITAS-NEAHADVAVAALNANKYVFCEKPLAV-TAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGE  165 (357)
T ss_dssp             CCEEEECSC-GGGHHHHHHHHHHTTCEEEEESSSCS-SHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHHTT
T ss_pred             CCEEEEcCC-cHHHHHHHHHHHHCCCCEEeecCccC-CHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhcCC
Confidence            999987542 22334555556678887753111100 0111223556677888765  22221222233455555553  


Q ss_pred             hCCcEEEee
Q 021372          220 LGFPVMIKA  228 (313)
Q Consensus       220 lg~P~VvKP  228 (313)
                      +|-+..+.-
T Consensus       166 iG~i~~v~~  174 (357)
T 3ec7_A          166 IGQPLMVHG  174 (357)
T ss_dssp             TCSEEEEEE
T ss_pred             CCCeEEEEE
Confidence            676666554

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.87  E-value=0.28  Score=44.69  Aligned_cols=33  Identities=24%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHH-HcCCcEEEEecCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAH-EMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~-~~G~~vi~v~~~~  104 (313)
                      ++|||+| +|.+|..+++.|. +.|++|++++...
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~   37 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLV   37 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCC
Confidence            4899999 5889999999999 9999999986543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.86  E-value=0.035  Score=48.08  Aligned_cols=70  Identities=9%  Similarity=-0.040  Sum_probs=46.5

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+++|||+|+ |.+|..+++.|.+.|++|++++.+.....     ......+.     -+..+.+.+.++++  ++|.|+
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~-----~Dl~d~~~~~~~~~--~~d~vi   68 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA-----EAHEEIVA-----CDLADAQAVHDLVK--DCDGII   68 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC-----CTTEEECC-----CCTTCHHHHHHHHT--TCSEEE
T ss_pred             CCceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc-----CCCccEEE-----ccCCCHHHHHHHHc--CCCEEE
Confidence            4688999995 88999999999999999998865443211     11112121     12345566666664  589988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -.-
T Consensus        69 ~~a   71 (267)
T 3ay3_A           69 HLG   71 (267)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.85  E-value=0.15  Score=43.79  Aligned_cols=32  Identities=6%  Similarity=0.067  Sum_probs=28.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r   39 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYR   39 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999 666899999999999999998864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=93.84  E-value=0.081  Score=45.43  Aligned_cols=34  Identities=15%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   43 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSE   43 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=93.83  E-value=0.14  Score=44.62  Aligned_cols=35  Identities=9%  Similarity=0.050  Sum_probs=29.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRL   62 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            357899999 56689999999999999999986543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.83  E-value=0.19  Score=43.51  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        16 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57899999 5678999999999999999998644

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=93.81  E-value=1  Score=40.19  Aligned_cols=148  Identities=12%  Similarity=0.012  Sum_probs=80.3

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH------HhcC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA------ISRG  143 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~------~~~~  143 (313)
                      |.||.|+|. |.++...++++++.|.+++.+.+ .+...  ...+.. +     +...-|.+.+.+++..      ...+
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d-~~~~~--~~~~~~-~-----~~~~~~~~~~~ll~~~~~l~~~~~~~   73 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYD-INDSV--GIIDSI-S-----PQSEFFTEFEFFLDHASNLKRDSATA   73 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEEC-SSCCC--GGGGGT-C-----TTCEEESSHHHHHHHHHHHTTSTTTS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEc-CCHHH--HHHHhh-C-----CCCcEECCHHHHHHhhhhhhhccCCC
Confidence            578999997 67899999999999988887763 32221  111111 1     1112245667777543      2467


Q ss_pred             CCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--Hh
Q 021372          144 CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--EL  220 (313)
Q Consensus       144 id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~l  220 (313)
                      +|+|+.... ...+...+..+.+.|.+++.--|-+. ...+=..+.++.++.|+..-..+. +.......+.+..+  .+
T Consensus        74 vD~V~I~tP-~~~H~~~~~~al~aGkhVl~EKPla~-~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~i  151 (318)
T 3oa2_A           74 LDYVSICSP-NYLHYPHIAAGLRLGCDVICEKPLVP-TPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKS  151 (318)
T ss_dssp             CCEEEECSC-GGGHHHHHHHHHHTTCEEEECSSCCS-CHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHS-C
T ss_pred             CcEEEECCC-cHHHHHHHHHHHHCCCeEEEECCCcC-CHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhcCCC
Confidence            999987642 22335555556678987763211110 111223345667778876533321 12222334455544  35


Q ss_pred             CCcEEEeec
Q 021372          221 GFPVMIKAT  229 (313)
Q Consensus       221 g~P~VvKP~  229 (313)
                      |-+.-+.-.
T Consensus       152 G~i~~v~~~  160 (318)
T 3oa2_A          152 PHKYEVDLT  160 (318)
T ss_dssp             SSCEEEEEE
T ss_pred             CceEEEEEE
Confidence            656555443

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.81  E-value=0.17  Score=43.63  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   41 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=93.78  E-value=0.24  Score=42.61  Aligned_cols=80  Identities=8%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcC---CcEEEEecCCCcchhhhhh---cCceEEccCCCCCCCcCCHHHHHHHHHhc-
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMG---IPCVAVYSTIDKDALHVKL---ADESVCIGEAPSSQSYLLIPNVLSAAISR-  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G---~~vi~v~~~~~~~~~~~~~---ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-  142 (313)
                      ++++||+| ++.+|..+++.|.+.|   ++|++++.+.........+   ......+.-  +..+...++.+++.+.+. 
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~--Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEI--DLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEEC--CTTCGGGHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEe--cCCChHHHHHHHHHHHHhc
Confidence            67899999 6668999999999999   9999987654432211111   112222211  112233455555544332 


Q ss_pred             ---CCCEEeeccC
Q 021372          143 ---GCTMLHPGYG  152 (313)
Q Consensus       143 ---~id~vip~~g  152 (313)
                         ++|+|+-.-+
T Consensus        99 g~~~id~li~~Ag  111 (267)
T 1sny_A           99 KDQGLNVLFNNAG  111 (267)
T ss_dssp             GGGCCSEEEECCC
T ss_pred             CCCCccEEEECCC
Confidence               6999986544

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=93.77  E-value=0.26  Score=42.14  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=30.3

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   50 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   50 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            357899999 566899999999999999999875543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.76  E-value=0.16  Score=44.32  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=29.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999 5668999999999999999988644

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.75  E-value=0.19  Score=43.56  Aligned_cols=34  Identities=12%  Similarity=-0.042  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   65 (272)
T 1yb1_A           31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   65 (272)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCH
Confidence            57899999 66789999999999999999986543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.75  E-value=0.23  Score=43.27  Aligned_cols=35  Identities=17%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   56 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   56 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=93.74  E-value=0.11  Score=45.82  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=28.3

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+..+++||+| ++.+|+.+++.|.+.|++|++++
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~   40 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHY   40 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEc
Confidence            33467899999 56689999999999999999986

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=93.73  E-value=0.28  Score=44.42  Aligned_cols=145  Identities=17%  Similarity=0.201  Sum_probs=78.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++.||.|+|.|.+|...++++++. |++++.+. +.+... ...++... -+.      .+.+.+.++   .+.++|+|+
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~-d~~~~~-~~~~~~~~-g~~------~~~~~~~~l---~~~~~D~V~   71 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCY-SRTEDK-REKFGKRY-NCA------GDATMEALL---AREDVEMVI   71 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEE-CSSHHH-HHHHHHHH-TCC------CCSSHHHHH---HCSSCCEEE
T ss_pred             CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEE-CCCHHH-HHHHHHHc-CCC------CcCCHHHHh---cCCCCCEEE
Confidence            357899999999999999999987 88877664 333221 12222221 111      134455544   456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc-CCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~-~~~~~~~~~~~~--~lg~P~V  225 (313)
                      ..... ......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..-..+... ......+.+.++  .+|-+..
T Consensus        72 i~tp~-~~h~~~~~~al~~gk~vl~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~  149 (354)
T 3db2_A           72 ITVPN-DKHAEVIEQCARSGKHIYVEKPISV-SLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGEVSS  149 (354)
T ss_dssp             ECSCT-TSHHHHHHHHHHTTCEEEEESSSCS-SHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTTCCEEE
T ss_pred             EeCCh-HHHHHHHHHHHHcCCEEEEccCCCC-CHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCCCCeEE
Confidence            76421 2334455555577887653111000 01112334567778887654333111 122334555554  4776766


Q ss_pred             Eee
Q 021372          226 IKA  228 (313)
Q Consensus       226 vKP  228 (313)
                      +.-
T Consensus       150 v~~  152 (354)
T 3db2_A          150 IEA  152 (354)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.72  E-value=0.16  Score=44.12  Aligned_cols=79  Identities=10%  Similarity=0.049  Sum_probs=47.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-h----hcCceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-K----LADESVCIGEAPSSQSYLLIPNVLSAAISR--  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~----~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--  142 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+........ .    .......+.-  +..+...++.+++.+.+.  
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~--Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAI--DLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEEC--CTTSTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEe--cCCCHHHHHHHHHHHHHHcC
Confidence            57899999 566899999999999999999875433221111 0    1122222211  122233455555554433  


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      ++|.++-.-
T Consensus        98 ~id~lv~nA  106 (266)
T 4egf_A           98 GLDVLVNNA  106 (266)
T ss_dssp             SCSEEEEEC
T ss_pred             CCCEEEECC
Confidence            699988653

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=93.67  E-value=0.26  Score=48.98  Aligned_cols=76  Identities=12%  Similarity=0.020  Sum_probs=49.1

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hh---h-cC--ceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VK---L-AD--ESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~---~-ad--~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      +++++|||+| +|.+|..+++.|.+.|++|++++......... ..   + ..  ..+..       +..+.+.+.++++
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~-------Dl~d~~~l~~~~~   81 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV-------DLCDRKGLEKVFK   81 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEEC-------CTTCHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEc-------CCCCHHHHHHHHH
Confidence            3468999999 68899999999999999999987543321100 00   0 11  12222       2345667777777


Q ss_pred             hcCCCEEeecc
Q 021372          141 SRGCTMLHPGY  151 (313)
Q Consensus       141 ~~~id~vip~~  151 (313)
                      +.++|+|+-.-
T Consensus        82 ~~~~D~Vih~A   92 (699)
T 1z45_A           82 EYKIDSVIHFA   92 (699)
T ss_dssp             HSCCCEEEECC
T ss_pred             hCCCCEEEECC
Confidence            66899998653

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.67  E-value=0.069  Score=47.21  Aligned_cols=36  Identities=8%  Similarity=-0.026  Sum_probs=31.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++++|+|+|+|..|+..+..|++.|++|++++..+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   41 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            457899999999999999999999999999976543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=93.65  E-value=0.11  Score=45.41  Aligned_cols=34  Identities=15%  Similarity=0.027  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999987543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.65  E-value=0.2  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.051  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           28 SPVALITGAGSGIGRATALALAADGVTVGALGRTR   62 (283)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999987544

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=93.65  E-value=0.19  Score=43.93  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+|+   +.+|..+++.|.+.|++|++++.+.
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            3578999996   4799999999999999999987544

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.64  E-value=0.24  Score=42.26  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   39 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.61  E-value=0.059  Score=50.40  Aligned_cols=36  Identities=6%  Similarity=0.040  Sum_probs=30.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|+++|+|+|+|+.|+.++..|.+.|++|++++...
T Consensus        20 ~m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           20 HMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             ---CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             cCCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            356889999999999999999999999999997543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=93.60  E-value=0.58  Score=42.26  Aligned_cols=143  Identities=11%  Similarity=0.074  Sum_probs=76.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.+|...++++.+.  +++++.+. +.+... ...++...- +      ..+.+.+.++   .+.++|+|+
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~-d~~~~~-~~~~~~~~~-~------~~~~~~~~ll---~~~~~D~V~   80 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVC-DIDPAA-LKAAVERTG-A------RGHASLTDML---AQTDADIVI   80 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEE-CSSHHH-HHHHHHHHC-C------EEESCHHHHH---HHCCCSEEE
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEE-cCCHHH-HHHHHHHcC-C------ceeCCHHHHh---cCCCCCEEE
Confidence            57899999999999999999987  78877554 333221 111221110 1      0134455544   456899998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... .......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..--.+. +.......+.+..+  .+|-+..
T Consensus        81 i~tp-~~~h~~~~~~al~~gk~v~~EKP~a~-~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  158 (354)
T 3q2i_A           81 LTTP-SGLHPTQSIECSEAGFHVMTEKPMAT-RWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYM  158 (354)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEECSSSCS-SHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCSEEE
T ss_pred             ECCC-cHHHHHHHHHHHHCCCCEEEeCCCcC-CHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCceEE
Confidence            7542 11234444555577887763211110 011122445667778876632221 12222344555554  4676665


Q ss_pred             Ee
Q 021372          226 IK  227 (313)
Q Consensus       226 vK  227 (313)
                      +.
T Consensus       159 v~  160 (354)
T 3q2i_A          159 VN  160 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=93.59  E-value=0.14  Score=43.54  Aligned_cols=35  Identities=14%  Similarity=0.243  Sum_probs=30.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            57899999 566899999999999999999875543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=93.58  E-value=0.16  Score=43.62  Aligned_cols=75  Identities=11%  Similarity=-0.028  Sum_probs=46.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh---cCceEEccCCCCCCCcCCHHHHHHHHHhc--CC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL---ADESVCIGEAPSSQSYLLIPNVLSAAISR--GC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~---ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~i  144 (313)
                      ||++||+| ++.+|..+++.|.+.|++|++++.+.........+   ......+       +..+++.+.+.+.+.  ++
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~-------d~~~v~~~~~~~~~~~g~i   73 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM-------SEQEPAELIEAVTSAYGQV   73 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC-------CCCSHHHHHHHHHHHHSCC
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE-------CHHHHHHHHHHHHHHhCCC
Confidence            46899999 56689999999999999999886544322111111   1122222       234566666655433  69


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |+++-.-+
T Consensus        74 D~lv~nAg   81 (254)
T 1zmt_A           74 DVLVSNDI   81 (254)
T ss_dssp             CEEEEECC
T ss_pred             CEEEECCC
Confidence            99886543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.57  E-value=0.27  Score=42.11  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=93.57  E-value=0.35  Score=43.03  Aligned_cols=72  Identities=10%  Similarity=-0.027  Sum_probs=45.9

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc-hhhhh---h-cC--ceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-ALHVK---L-AD--ESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~-~~~~~---~-ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      +|||+| +|.+|..+++.|.+.|++|++++...... .....   . ..  ..+..       +..+.+.+.++++..++
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~~~~~~~~~~~~~~~   74 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEG-------DIRNEALMTEILHDHAI   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEEC-------CTTCHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEc-------cCCCHHHHHHHhhccCC
Confidence            799999 57899999999999999999886422111 10000   0 11  12222       23456677777766679


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |+|+-.-
T Consensus        75 D~vih~A   81 (338)
T 1udb_A           75 DTVIHFA   81 (338)
T ss_dssp             SEEEECC
T ss_pred             CEEEECC
Confidence            9998543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.56  E-value=0.2  Score=43.67  Aligned_cols=35  Identities=11%  Similarity=0.100  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   62 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE   62 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999 56689999999999999999986543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=93.52  E-value=0.14  Score=44.66  Aligned_cols=59  Identities=8%  Similarity=0.070  Sum_probs=44.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|||+| .|.+|..+++.|.+.|++|++++...               .       +..+.+.+.++++..++|+|+-
T Consensus        12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~-------Dl~d~~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A           12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------L-------DITNVLAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------C-------CTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------C-------CCCCHHHHHHHHHhcCCCEEEE
Confidence            68899999 67899999999999999999885320               1       1344566767666658999886


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      .-
T Consensus        70 ~A   71 (292)
T 1vl0_A           70 CA   71 (292)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=93.52  E-value=0.56  Score=42.68  Aligned_cols=143  Identities=10%  Similarity=0.037  Sum_probs=78.3

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.+|.. .++.+++. +++++.+. +.+.......+....          .|.+.+.++   .+.++|+|+
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~-d~~~~~~~~~~~~~~----------~~~~~~~ll---~~~~~D~V~   72 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVA-SRDEEKVKRDLPDVT----------VIASPEAAV---QHPDVDLVV   72 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEE-CSCHHHHHHHCTTSE----------EESCHHHHH---TCTTCSEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEE-cCCHHHHHhhCCCCc----------EECCHHHHh---cCCCCCEEE
Confidence            578999999999986 77888776 78887665 333222111111111          134455544   356799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC-CCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~-~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... .......+..+.+.|..++.--+-+. ...+=..+.+++++.|+..--.+.... .....+.+.++  .+|-+..
T Consensus        73 i~tp-~~~H~~~~~~al~aGk~Vl~EKPla~-~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~  150 (364)
T 3e82_A           73 IASP-NATHAPLARLALNAGKHVVVDKPFTL-DMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQGTLGAVKH  150 (364)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEECSCSCS-SHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHTTTCSEEE
T ss_pred             EeCC-hHHHHHHHHHHHHCCCcEEEeCCCcC-CHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHcCCCcceEE
Confidence            7642 12334555555678988763211110 111123456677888876543321111 22334555554  5677776


Q ss_pred             Eeec
Q 021372          226 IKAT  229 (313)
Q Consensus       226 vKP~  229 (313)
                      +...
T Consensus       151 ~~~~  154 (364)
T 3e82_A          151 FESH  154 (364)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.51  E-value=0.22  Score=44.03  Aligned_cols=34  Identities=12%  Similarity=0.027  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~   65 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQ   65 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999986543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=93.50  E-value=0.11  Score=47.27  Aligned_cols=141  Identities=10%  Similarity=0.011  Sum_probs=79.7

Q ss_pred             ccEEEEEcCCHhHH-HHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAV-RVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~-~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.+|. .+++++++. +++++.+.+ .+.. ....++...- +.      .+.+.+.+   +.+.++|+|+
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d-~~~~-~~~~~a~~~g-~~------~~~~~~~l---l~~~~~D~V~   94 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIAS-RRWD-RAKRFTERFG-GE------PVEGYPAL---LERDDVDAVY   94 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEE-SSHH-HHHHHHHHHC-SE------EEESHHHH---HTCTTCSEEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEc-CCHH-HHHHHHHHcC-CC------CcCCHHHH---hcCCCCCEEE
Confidence            57899999999998 789999987 788876642 2221 1122222210 10      12334444   3456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeC-----CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--Hh
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIG-----PNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--EL  220 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g-----~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~l  220 (313)
                      .... .......+..+.+.|..++.     .+.+.      =..+.+++++.|+..-..+. +.......+.+.++  .+
T Consensus        95 i~tp-~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e------a~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~i  167 (350)
T 3rc1_A           95 VPLP-AVLHAEWIDRALRAGKHVLAEKPLTTDRPQ------AERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVI  167 (350)
T ss_dssp             ECCC-GGGHHHHHHHHHHTTCEEEEESSSCSSHHH------HHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTT
T ss_pred             ECCC-cHHHHHHHHHHHHCCCcEEEeCCCCCCHHH------HHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCC
Confidence            7542 22334555555678887753     22222      23455677888887644331 12233455666665  56


Q ss_pred             CCcEEEeecc
Q 021372          221 GFPVMIKATA  230 (313)
Q Consensus       221 g~P~VvKP~~  230 (313)
                      |-+..+.-..
T Consensus       168 G~i~~v~~~~  177 (350)
T 3rc1_A          168 GEIRSFAASF  177 (350)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            7676666553

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.49  E-value=0.18  Score=44.04  Aligned_cols=35  Identities=11%  Similarity=-0.007  Sum_probs=29.8

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ...|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            3468899999 5568999999999999999998654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.48  E-value=0.19  Score=44.39  Aligned_cols=39  Identities=8%  Similarity=-0.003  Sum_probs=31.8

Q ss_pred             CcccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           65 LKVTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        65 ~~~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |......|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            33444568999999 5668999999999999999998754

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.47  E-value=0.53  Score=40.58  Aligned_cols=34  Identities=9%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      .++|+|+|.|.+|..+++.|.+.|+ ++++++.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            5789999999999999999999998 677776554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.46  E-value=0.18  Score=43.43  Aligned_cols=34  Identities=9%  Similarity=0.111  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTK   40 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.46  E-value=0.18  Score=43.49  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ...+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   63 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDV   63 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence            3358899999 56789999999999999999986543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.45  E-value=0.26  Score=41.78  Aligned_cols=31  Identities=13%  Similarity=0.098  Sum_probs=27.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~~~   36 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNG   36 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            57899999 56689999999999999999884

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.43  E-value=0.079  Score=48.34  Aligned_cols=33  Identities=9%  Similarity=0.011  Sum_probs=30.1

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +||+|+|+|+.|+.++..|++.|++|++++.++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            579999999999999999999999999996544

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=93.43  E-value=0.24  Score=42.53  Aligned_cols=35  Identities=14%  Similarity=0.055  Sum_probs=29.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            57899999 567899999999999999998865443

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.43  E-value=0.18  Score=44.04  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=30.2

Q ss_pred             cccccEEEEEcC-C--HhHHHHHHHHHHcCCcEEEEecCC
Q 021372           68 TCRQEKILVANR-G--EIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig~-g--~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ....|++||+|+ +  .+|+.+++.|.+.|++|++++.+.
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            334688999994 3  389999999999999999987654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.41  E-value=0.15  Score=43.23  Aligned_cols=35  Identities=11%  Similarity=0.298  Sum_probs=29.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence            47899999 566899999999999999999876543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.39  E-value=0.18  Score=44.65  Aligned_cols=35  Identities=6%  Similarity=0.031  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   60 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   60 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999 56689999999999999999986543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.37  E-value=0.28  Score=42.84  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   63 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   63 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999 66689999999999999999886543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.36  E-value=0.2  Score=43.60  Aligned_cols=34  Identities=12%  Similarity=0.034  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            368899999 5568999999999999999998654

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=93.35  E-value=0.13  Score=44.97  Aligned_cols=34  Identities=9%  Similarity=0.109  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   39 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSA   39 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCH
Confidence            67899999 56689999999999999999986543

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=93.35  E-value=0.24  Score=43.10  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~   66 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   66 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCh
Confidence            57899999 66789999999999999999986543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=93.34  E-value=0.19  Score=43.73  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+   +.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~   42 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   42 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            578999996   5799999999999999999987554

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.34  E-value=0.29  Score=44.37  Aligned_cols=35  Identities=14%  Similarity=0.121  Sum_probs=30.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~   80 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQ   80 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChh
Confidence            57899999 566899999999999999999876554

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=93.33  E-value=0.2  Score=43.00  Aligned_cols=35  Identities=9%  Similarity=0.024  Sum_probs=29.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   37 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQ   37 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            57899999 566899999999999999999865443

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=93.33  E-value=0.091  Score=45.36  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~   42 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNE   42 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999987543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.31  E-value=0.08  Score=46.92  Aligned_cols=36  Identities=11%  Similarity=0.034  Sum_probs=31.4

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|+++|+|+|+|..|+..+..|.+.|++|++++..
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            345789999999999999999999999999999753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.31  E-value=0.07  Score=48.59  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||.|+|.+|...++.++.+|.+ |++++.++........+++..+....+ ...+....+.+.++....++|+++-
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~-~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVE-RLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECC-SCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhccccccc-ccchHHHHHHHHHHhCCCCCCEEEE
Confidence            57899999999999999999999998 787766655544444556555432110 0001111233333333457999996


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus       259 ~~g  261 (363)
T 3m6i_A          259 CTG  261 (363)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.28  E-value=0.16  Score=45.38  Aligned_cols=34  Identities=9%  Similarity=0.137  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~   42 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQ   42 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999886544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.23  E-value=0.14  Score=44.01  Aligned_cols=89  Identities=8%  Similarity=0.011  Sum_probs=53.1

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh-cCCCEE
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML  147 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~~id~v  147 (313)
                      ++.+||.|+|.|.+|..+++.|++.|++|+.++...     ...-+| .+.++ +      ..+..+++.+.. .+.+.+
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-----~~~~aD-ilavP-~------~ai~~vl~~l~~~l~~g~i   70 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-----DIRDFE-LVVID-A------HGVEGYVEKLSAFARRGQM   70 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-----GGGGCS-EEEEC-S------SCHHHHHHHHHTTCCTTCE
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-----HhccCC-EEEEc-H------HHHHHHHHHHHHhcCCCCE
Confidence            345689999999999999999999999999886421     134567 66663 1      234555544443 234444


Q ss_pred             eec-cCcCcccHHHHHHHHHcCCcee
Q 021372          148 HPG-YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       148 ip~-~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      +.. .+....  .+.+.+...|..++
T Consensus        71 vvd~sgs~~~--~vl~~~~~~g~~fv   94 (232)
T 3dfu_A           71 FLHTSLTHGI--TVMDPLETSGGIVM   94 (232)
T ss_dssp             EEECCSSCCG--GGGHHHHHTTCEEE
T ss_pred             EEEECCcCHH--HHHHHHHhCCCcEE
Confidence            432 333222  22333345566443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.23  E-value=0.25  Score=42.88  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   55 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   55 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 66689999999999999999986543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.22  E-value=0.3  Score=42.14  Aligned_cols=34  Identities=15%  Similarity=0.035  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   41 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCH
Confidence            47899999 56789999999999999999986543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.22  E-value=0.22  Score=42.39  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~   39 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQ   39 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986544

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.22  E-value=0.14  Score=44.96  Aligned_cols=34  Identities=12%  Similarity=-0.005  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   42 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNG   42 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999886443

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=93.19  E-value=0.16  Score=44.01  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   42 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDG   42 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.18  E-value=0.16  Score=44.64  Aligned_cols=80  Identities=14%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhh----cCceEEccCCCCCCCc-CCHHHHHHHHHhc-
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKL----ADESVCIGEAPSSQSY-LLIPNVLSAAISR-  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~----ad~~~~v~~~~~~~~~-~~~~~l~~~~~~~-  142 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+....... ..+    ......+.-  +..+. ..++.+.+.+.+. 
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~--Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQL--DVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEEC--CTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEc--cCCCcHHHHHHHHHHHHHhC
Confidence            57899999 56689999999999999999987554321111 111    112222211  11122 3345555555443 


Q ss_pred             -CCCEEeeccC
Q 021372          143 -GCTMLHPGYG  152 (313)
Q Consensus       143 -~id~vip~~g  152 (313)
                       ++|+++-.-|
T Consensus        90 g~iD~lv~nAg  100 (311)
T 3o26_A           90 GKLDILVNNAG  100 (311)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence             7999987654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.18  E-value=0.11  Score=43.19  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=28.2

Q ss_pred             EEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        73 ~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ||||+|+ |.+|..+++.|.+.|++|+++..++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            6999995 8899999999999999999986543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=93.18  E-value=0.18  Score=45.19  Aligned_cols=144  Identities=12%  Similarity=0.016  Sum_probs=77.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+.||.|+|.|.+|...++.+.+. +++++.+. +.+... ...++...- +      . +.+.+.++   ...++|+|+
T Consensus         2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~-d~~~~~-~~~~~~~~~-~------~-~~~~~~~l---~~~~~D~V~   68 (331)
T 4hkt_A            2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVA-DAFPAA-AEAIAGAYG-C------E-VRTIDAIE---AAADIDAVV   68 (331)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEE-CSSHHH-HHHHHHHTT-C------E-ECCHHHHH---HCTTCCEEE
T ss_pred             CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEE-CCCHHH-HHHHHHHhC-C------C-cCCHHHHh---cCCCCCEEE
Confidence            568999999999999999999986 88887654 333221 112222110 1      0 34444444   455799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc-cCCCHHHHHHHHHH--hCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLADE--LGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~-~~~~~~~~~~~~~~--lg~P~V  225 (313)
                      .... .......+..+.+.|.+++.--+-+ ....+-..+.+.+++.|+..-..+.. .......+.+..++  +|-+..
T Consensus        69 i~tp-~~~h~~~~~~al~~gk~v~~EKP~~-~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~  146 (331)
T 4hkt_A           69 ICTP-TDTHADLIERFARAGKAIFCEKPID-LDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGEVEM  146 (331)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEECSCSC-SSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCSEEE
T ss_pred             EeCC-chhHHHHHHHHHHcCCcEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCceEE
Confidence            6542 1223445555557788776321110 01112233566778888765443311 11223345555543  676665


Q ss_pred             Eee
Q 021372          226 IKA  228 (313)
Q Consensus       226 vKP  228 (313)
                      +.-
T Consensus       147 ~~~  149 (331)
T 4hkt_A          147 VTI  149 (331)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=93.17  E-value=0.096  Score=48.16  Aligned_cols=40  Identities=8%  Similarity=0.112  Sum_probs=32.6

Q ss_pred             CcccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        65 ~~~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +|.+++..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus        20 ~M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           20 HMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             ---CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             cccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3444456789999999999999999999999999997654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.17  E-value=0.082  Score=44.75  Aligned_cols=34  Identities=9%  Similarity=0.091  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSV   36 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999886543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=93.16  E-value=0.22  Score=42.28  Aligned_cols=34  Identities=9%  Similarity=0.043  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~   40 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 66789999999999999999986543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=93.15  E-value=0.16  Score=43.36  Aligned_cols=68  Identities=13%  Similarity=0.036  Sum_probs=45.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~v  147 (313)
                      ||++||+| ++.+|..+++.|.+.|++|++++.+......     +    +     .-+..+.+.+.+++++.  ++|++
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----~----~-----~~Dl~~~~~v~~~~~~~~~~id~l   66 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----D----L-----STAEGRKQAIADVLAKCSKGMDGL   66 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----C----T-----TSHHHHHHHHHHHHTTCTTCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----c----c-----ccCCCCHHHHHHHHHHhCCCCCEE
Confidence            46899999 5668999999999999999998655432210     0    1     11123345566666554  68999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-+
T Consensus        67 v~~Ag   71 (257)
T 1fjh_A           67 VLCAG   71 (257)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            86644

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.15  E-value=0.22  Score=43.40  Aligned_cols=34  Identities=9%  Similarity=0.031  Sum_probs=29.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            368899999 5668999999999999999998754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=93.13  E-value=0.13  Score=44.61  Aligned_cols=119  Identities=16%  Similarity=0.116  Sum_probs=67.4

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           72 EKILVANR-GEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++|||+|+ |.+|..+++.|.+.  |++|++++.++..........-+.+..       +..+.+.+.++++  ++|.|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~-------D~~d~~~l~~~~~--~~d~vi   71 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHG-------DYNQPESLQKAFA--GVSKLL   71 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEEC-------CTTCHHHHHHHTT--TCSEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEe-------ccCCHHHHHHHHh--cCCEEE
Confidence            46999995 88999999999998  999999876543221100111122222       2445666666654  588887


Q ss_pred             eccCcCc-c--c----HHHHHHHHHcCC-ceeCCCHHH-----HHHhCCHHHHHHHHHHCCCCC
Q 021372          149 PGYGFLA-E--N----AVFVEMCREHGI-NFIGPNPDS-----IRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       149 p~~g~~~-e--~----~~~~~~l~~~gi-~~~g~~~~~-----i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      -.-+... +  +    ..+.+.+.+.|+ .++..+...     ..-...|....+++++.|+++
T Consensus        72 ~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~~K~~~E~~~~~~~~~~  135 (287)
T 2jl1_A           72 FISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFAEESIIPLAHVHLATEYAIRTTNIPY  135 (287)
T ss_dssp             ECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGCCSTHHHHHHHHHHHHHHTTCCE
T ss_pred             EcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCCchHHHHHHHHHHHHHcCCCe
Confidence            5432211 1  1    234555666665 232111110     112345777777777888764

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=93.12  E-value=0.26  Score=42.55  Aligned_cols=34  Identities=9%  Similarity=0.041  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   47 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   47 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 66689999999999999999986543

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=93.10  E-value=0.33  Score=43.71  Aligned_cols=75  Identities=7%  Similarity=-0.128  Sum_probs=45.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc--hhhhhhc-------CceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD--ALHVKLA-------DESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~--~~~~~~a-------d~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |++|||+| +|.+|..+++.|.+.|++|++++......  .....+.       .....+     ..+..+.+.+.+++.
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~~~~~~~   75 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH-----YGDLSDTSNLTRILR   75 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEEC-----CCCSSCHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEE-----ECCCCCHHHHHHHHH
Confidence            46899999 58899999999999999999986543221  0000110       111112     112445677777777


Q ss_pred             hcCCCEEeec
Q 021372          141 SRGCTMLHPG  150 (313)
Q Consensus       141 ~~~id~vip~  150 (313)
                      ..++|.|+-.
T Consensus        76 ~~~~d~vih~   85 (372)
T 1db3_A           76 EVQPDEVYNL   85 (372)
T ss_dssp             HHCCSEEEEC
T ss_pred             hcCCCEEEEC
Confidence            6679988864

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.07  E-value=0.35  Score=42.12  Aligned_cols=80  Identities=9%  Similarity=-0.005  Sum_probs=48.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-h---cCceEEccCCCCCCCcCCHHHHHHHHHh-cCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-L---ADESVCIGEAPSSQSYLLIPNVLSAAIS-RGC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~---ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~~i  144 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+......... +   ......+.-  +..+...++.+++.+.+ .++
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           33 GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAG--DLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEEC--CTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEe--cCCCHHHHHHHHHHHHHhCCC
Confidence            57899999 5668999999999999999998765543221111 1   112222211  12223345555555544 379


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |.++-.-+
T Consensus       111 D~lvnnAg  118 (275)
T 4imr_A          111 DILVINAS  118 (275)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99886543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=93.06  E-value=0.39  Score=41.71  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccch
Confidence            368899999 566899999999999999999876543

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=93.05  E-value=0.26  Score=43.39  Aligned_cols=67  Identities=12%  Similarity=0.023  Sum_probs=46.4

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +|||+| +|.+|..+++.|.+.  |++|++++.......     ....+..       +..+.+.+.+++++.++|+|+-
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~~~~~-------D~~d~~~~~~~~~~~~~d~vih   68 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-----GIKFITL-------DVSNRDEIDRAVEKYSIDAIFH   68 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-----TCCEEEC-------CTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-----CceEEEe-------cCCCHHHHHHHHhhcCCcEEEE
Confidence            589999 678999999999998  899998864432211     1122322       2445677777777678999986


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      .-
T Consensus        69 ~a   70 (317)
T 3ajr_A           69 LA   70 (317)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.05  E-value=0.28  Score=42.75  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 55689999999999999999986543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=93.04  E-value=0.17  Score=43.53  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56789999999999999999986543

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=93.04  E-value=0.49  Score=40.92  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+..
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~   69 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHP   69 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999 556899999999999999999876543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=93.02  E-value=0.31  Score=42.51  Aligned_cols=65  Identities=9%  Similarity=-0.022  Sum_probs=43.9

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +++++|||+| +|.+|..+++.|.+.|+      ....          ....+.  ....+..+.+.+.++++..++|+|
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~----------~~~~~~--~~~~D~~d~~~~~~~~~~~~~d~V   65 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE----------DWVFVS--SKDADLTDTAQTRALFEKVQPTHV   65 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC----------EEEECC--TTTCCTTSHHHHHHHHHHSCCSEE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc----------cccccC--ceecccCCHHHHHHHHhhcCCCEE
Confidence            3468999999 58899999999999998      0100          001110  112234567788888888889999


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +-.-
T Consensus        66 ih~A   69 (319)
T 4b8w_A           66 IHLA   69 (319)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            8653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=93.01  E-value=0.64  Score=41.61  Aligned_cols=148  Identities=11%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ++.||.|+|.|.+|...++++++. +++++.+. +.+... ...++...- ++     ..+.+.+.++   ...++|+|+
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~-d~~~~~-~~~~~~~~~-~~-----~~~~~~~~ll---~~~~~D~V~   72 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIA-SRRLEN-AQKMAKELA-IP-----VAYGSYEELC---KDETIDIIY   72 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEB-CSSSHH-HHHHHHHTT-CC-----CCBSSHHHHH---HCTTCSEEE
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEE-eCCHHH-HHHHHHHcC-CC-----ceeCCHHHHh---cCCCCCEEE
Confidence            357999999999999999999985 77777654 332211 122222210 10     1234455544   456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... .......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..-..+. +.......+.+.++  .+|-+..
T Consensus        73 i~tp-~~~h~~~~~~al~~gk~vl~EKP~~~-~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~  150 (330)
T 3e9m_A           73 IPTY-NQGHYSAAKLALSQGKPVLLEKPFTL-NAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLGEILW  150 (330)
T ss_dssp             ECCC-GGGHHHHHHHHHHTTCCEEECSSCCS-SHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTCSEEE
T ss_pred             EcCC-CHHHHHHHHHHHHCCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCCCeEE
Confidence            6542 12334455555577877653111100 011123456677888876543331 12222345555555  5676766


Q ss_pred             Eeecc
Q 021372          226 IKATA  230 (313)
Q Consensus       226 vKP~~  230 (313)
                      +.-..
T Consensus       151 i~~~~  155 (330)
T 3e9m_A          151 VQSVT  155 (330)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.01  E-value=0.17  Score=43.60  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             ccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR---GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+|+   +.+|..+++.|.+.|++|++++.+.
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999996   5799999999999999999986544

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=92.99  E-value=0.22  Score=43.47  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~   62 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   62 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 46789999999999999999986543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.99  E-value=0.15  Score=44.87  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|||+|+|..|.+.++.|.+.|.+|++++++.
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            5889999999999999999999999999997654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.96  E-value=0.29  Score=42.35  Aligned_cols=33  Identities=18%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++..
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5668999999999999999988753

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=92.94  E-value=0.46  Score=43.17  Aligned_cols=146  Identities=12%  Similarity=0.110  Sum_probs=76.5

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.++.. +++++++. +++++.+. +.+... ...++..+-      ...-|.+.+.+++   +.++|+|+
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~-d~~~~~-~~~~a~~~~------~~~~~~~~~~ll~---~~~vD~V~   73 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAAC-DSDLER-ARRVHRFIS------DIPVLDNVPAMLN---QVPLDAVV   73 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEE-CSSHHH-HGGGGGTSC------SCCEESSHHHHHH---HSCCSEEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEE-cCCHHH-HHHHHHhcC------CCcccCCHHHHhc---CCCCCEEE
Confidence            468999999999885 88999886 78887654 333221 122333210      0111344555544   56799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... .......+..+.+.|.+++.--|-+. ...+=..+.+++++.|+..--.+. +.......+.+.++  .+|-+..
T Consensus        74 i~tp-~~~H~~~~~~al~aGkhVl~EKPla~-~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~i~~  151 (359)
T 3m2t_A           74 MAGP-PQLHFEMGLLAMSKGVNVFVEKPPCA-TLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQVDEFGETLH  151 (359)
T ss_dssp             ECSC-HHHHHHHHHHHHHTTCEEEECSCSCS-SHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHTSGGGCCEEE
T ss_pred             EcCC-cHHHHHHHHHHHHCCCeEEEECCCcC-CHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHHCCCCCCeEE
Confidence            6542 11224445555577887763211110 011123345677788876533221 11112334444443  4676666


Q ss_pred             Eeec
Q 021372          226 IKAT  229 (313)
Q Consensus       226 vKP~  229 (313)
                      +.-.
T Consensus       152 ~~~~  155 (359)
T 3m2t_A          152 IQLN  155 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=92.92  E-value=0.32  Score=41.77  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~   43 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   43 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=92.91  E-value=0.18  Score=44.24  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=28.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRP   67 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 56689999999999999999987544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=92.90  E-value=0.4  Score=45.20  Aligned_cols=115  Identities=10%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc-----eEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-----SVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~-----~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      +++|+|+|+|.+|..+++.|.+.|++|++++.+....   ..++..     .+.++       ..+.+.+.+++.  ++|
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a---~~la~~~~~~~~~~~D-------v~d~~~l~~~l~--~~D   70 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESA---KKLSAGVQHSTPISLD-------VNDDAALDAEVA--KHD   70 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHH---HHTTTTCTTEEEEECC-------TTCHHHHHHHHT--TSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHH---HHHHHhcCCceEEEee-------cCCHHHHHHHHc--CCc
Confidence            5789999999999999999999999988876443211   112211     12121       234455555553  699


Q ss_pred             EEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          146 MLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       146 ~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      +|+...+.. ....+...+.+.|..++.....    ......+.+.++++|+.+...
T Consensus        71 vVIn~a~~~-~~~~i~~a~l~~g~~vvd~~~~----~~~~~~l~~aA~~aGv~~i~g  122 (450)
T 1ff9_A           71 LVISLIPYT-FHATVIKSAIRQKKHVVTTSYV----SPAMMELDQAAKDAGITVMNE  122 (450)
T ss_dssp             EEEECCC---CHHHHHHHHHHHTCEEEESSCC----CHHHHHTHHHHHHTTCEEECS
T ss_pred             EEEECCccc-cchHHHHHHHhCCCeEEEeecc----cHHHHHHHHHHHHCCCeEEeC
Confidence            998764321 1122333333446655522100    001234556777888776544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.90  E-value=0.14  Score=41.18  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=30.2

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+|+|+|+|..|..++..|.+.|.+|++++..+
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999999997554

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=92.89  E-value=0.23  Score=42.25  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus        11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   45 (255)
T 1fmc_A           11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            57899999 56789999999999999999986543

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.88  E-value=1.3  Score=41.27  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|.|..|...++.|+++|++|++.|........ ..+. ...+..+       ....+.+    .  ++|.|+.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-~~l~~G~~~~~g-------~~~~~~~----~--~~d~vV~   70 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-DKLPEAVERHTG-------SLNDEWL----M--AADLIVA   70 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-GGSCTTSCEEES-------SCCHHHH----H--TCSEEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-HHhhCCCEEEEC-------CCcHHHh----c--cCCEEEe
Confidence            468999999999999999999999999999865443211 1122 2222222       1122222    2  5888887


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCC-----------HHHH----HHHHHHCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD-----------KSTA----RETMKNAGVPT  199 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~D-----------K~~~----~~~l~~~Gip~  199 (313)
                      ..+....+..+ ....+.+++++ ...+......+           |..+    ..+|++.|..+
T Consensus        71 s~gi~~~~p~~-~~a~~~~~~v~-~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~  133 (439)
T 2x5o_A           71 SPGIALAHPSL-SAAADAGIEIV-GDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV  133 (439)
T ss_dssp             CTTSCTTCHHH-HHHHHTTCEEE-CHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCCCHHH-HHHHHCCCcEE-EHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence            65533333333 33446788887 34554433333           5444    46678888664

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.86  E-value=0.2  Score=43.08  Aligned_cols=34  Identities=15%  Similarity=0.109  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   46 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS   46 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.83  E-value=0.35  Score=42.35  Aligned_cols=34  Identities=9%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| +|.+|..+++.|.+.|++|++++.+.
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56789999999999999999986543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=92.83  E-value=0.44  Score=42.12  Aligned_cols=117  Identities=13%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             cccEEEEEcCCHhHHH-HHHHHHH-cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVR-VIRTAHE-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~-v~~al~~-~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ++.||.|+|.|.+|.. +++.+++ .+++++.+. +.+... ...++...- +.      .+.+.+.+++     ++|+|
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~-d~~~~~-~~~~a~~~~-~~------~~~~~~~ll~-----~~D~V   70 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAF-TPNKVK-REKICSDYR-IM------PFDSIESLAK-----KCDCI   70 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEE-CSCHHH-HHHHHHHHT-CC------BCSCHHHHHT-----TCSEE
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEE-CCCHHH-HHHHHHHcC-CC------CcCCHHHHHh-----cCCEE
Confidence            3579999999999986 8888887 477887554 333221 122222110 10      1455666665     69999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      +.... ..........+.+.|.+++.--+-+. ...+=..+.+.+++.|+..--.
T Consensus        71 ~i~tp-~~~h~~~~~~al~~gk~vl~EKP~~~-~~~~~~~l~~~a~~~g~~~~v~  123 (308)
T 3uuw_A           71 FLHSS-TETHYEIIKILLNLGVHVYVDKPLAS-TVSQGEELIELSTKKNLNLMVG  123 (308)
T ss_dssp             EECCC-GGGHHHHHHHHHHTTCEEEECSSSSS-SHHHHHHHHHHHHHHTCCEEEC
T ss_pred             EEeCC-cHhHHHHHHHHHHCCCcEEEcCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Confidence            86542 22334455555577887763211110 1111223456677888765443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=92.81  E-value=0.26  Score=44.88  Aligned_cols=75  Identities=11%  Similarity=0.036  Sum_probs=46.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +++|||+| +|.+|..+++.|.+.| ++|++++..................+.     .+..+.+.+.++++  ++|+|+
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~-----~Dl~d~~~l~~~~~--~~d~Vi  104 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSE-----TSITDDALLASLQD--EYDYVF  104 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEEC-----SCTTCHHHHHHCCS--CCSEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEE-----CCCCCHHHHHHHhh--CCCEEE
Confidence            56899999 5889999999999999 999998654332111010011222121     12344555555543  799988


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -.-+
T Consensus       105 h~A~  108 (377)
T 2q1s_A          105 HLAT  108 (377)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            6543

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=92.80  E-value=0.34  Score=43.66  Aligned_cols=147  Identities=16%  Similarity=0.078  Sum_probs=77.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHH-H-cCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAH-E-MGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~-~-~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      |+.||.|+|.|.+|...++++. + .+++++.+. +.+... ...++..+- +    ....+.+.+.++   .+.++|+|
T Consensus         1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~-d~~~~~-~~~~~~~~g-~----~~~~~~~~~~ll---~~~~~D~V   70 (344)
T 3mz0_A            1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVT-DVNQEA-AQKVVEQYQ-L----NATVYPNDDSLL---ADENVDAV   70 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEE-CSSHHH-HHHHHHHTT-C----CCEEESSHHHHH---HCTTCCEE
T ss_pred             CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEE-cCCHHH-HHHHHHHhC-C----CCeeeCCHHHHh---cCCCCCEE
Confidence            4678999999999999999998 5 478877654 333221 111221110 0    000134444444   45679999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC--CCCCcccCCCHHHHHHHHH--HhCCc
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT--VPGSDGLLQSTEEAVKLAD--ELGFP  223 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~--p~~~~~~~~~~~~~~~~~~--~lg~P  223 (313)
                      +.... .......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..  .-+..+.......+.+..+  .+|-+
T Consensus        71 ~i~tp-~~~h~~~~~~al~~Gk~vl~EKP~a~-~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  148 (344)
T 3mz0_A           71 LVTSW-GPAHESSVLKAIKAQKYVFCEKPLAT-TAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEP  148 (344)
T ss_dssp             EECSC-GGGHHHHHHHHHHTTCEEEECSCSCS-SHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHTTTTSSE
T ss_pred             EECCC-chhHHHHHHHHHHCCCcEEEcCCCCC-CHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHcCCCCCc
Confidence            87542 22334555555677887753111110 1111234566778888866  2222122223344555554  36766


Q ss_pred             EEEee
Q 021372          224 VMIKA  228 (313)
Q Consensus       224 ~VvKP  228 (313)
                      ..+.-
T Consensus       149 ~~v~~  153 (344)
T 3mz0_A          149 LMIHC  153 (344)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=92.80  E-value=0.28  Score=43.74  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=29.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            367899999 5668999999999999999998644

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=92.79  E-value=0.24  Score=43.68  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             ccEEEEEcCC-H--hHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRG-E--IAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g-~--~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+|++ .  +|+.+++.|.+.|++|++++.+
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            5789999953 3  8999999999999999988654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=92.74  E-value=0.45  Score=42.61  Aligned_cols=75  Identities=11%  Similarity=-0.054  Sum_probs=46.8

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHc-CCcEEEEecCCC--cchhhhhh--cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           73 KILVAN-RGEIAVRVIRTAHEM-GIPCVAVYSTID--KDALHVKL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~-G~~vi~v~~~~~--~~~~~~~~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      ||||+| +|.+|..+++.|.+. |++|++++....  .......+  ......+.     .+..+.+.+.+++++.++|+
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~~~~~d~   76 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEH-----ADICDSAEITRIFEQYQPDA   76 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEE-----CCTTCHHHHHHHHHHHCCSE
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEE-----CCCCCHHHHHHHHhhcCCCE
Confidence            699999 588999999999998 899998864331  11110111  01111111     12445667777777668999


Q ss_pred             EeeccC
Q 021372          147 LHPGYG  152 (313)
Q Consensus       147 vip~~g  152 (313)
                      |+-.-+
T Consensus        77 vih~A~   82 (361)
T 1kew_A           77 VMHLAA   82 (361)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            986543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.72  E-value=0.42  Score=43.34  Aligned_cols=38  Identities=11%  Similarity=0.090  Sum_probs=31.9

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+..++|.|+|.|.+|..+++.|++.|++|++++.++
T Consensus         4 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            4 TKDISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             --CCSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             ccCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            44557889999999999999999999999999986544

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.70  E-value=0.37  Score=42.25  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   51 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   51 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5678999999999999999998654

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=92.66  E-value=0.13  Score=43.26  Aligned_cols=62  Identities=8%  Similarity=-0.051  Sum_probs=42.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-CCCEE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR-GCTML  147 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~v  147 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+..              .|       ..+.+.+.+++++. ++|.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D-------~~~~~~v~~~~~~~g~id~l   63 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LD-------ISDEKSVYHYFETIGAFDHL   63 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CC-------TTCHHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cC-------CCCHHHHHHHHHHhCCCCEE
Confidence            357899999 566899999999999999998854322              11       23345555555543 68888


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-.-+
T Consensus        64 v~nAg   68 (223)
T 3uce_A           64 IVTAG   68 (223)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            76543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.65  E-value=0.21  Score=46.25  Aligned_cols=77  Identities=16%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ...+|||+|+|.+|...++.++.+|. +|++++.++........+ ++..+  +  ...+  ...+.+.++....++|++
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi--~--~~~~--~~~~~i~~~t~g~g~D~v  286 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVI--D--PTKE--NFVEAVLDYTNGLGAKLF  286 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEE--C--TTTS--CHHHHHHHHTTTCCCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEE--c--CCCC--CHHHHHHHHhCCCCCCEE
Confidence            36789999999999999999999999 788876554443333333 34333  2  1111  225566666656689999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..|
T Consensus       287 id~~g  291 (404)
T 3ip1_A          287 LEATG  291 (404)
T ss_dssp             EECSS
T ss_pred             EECCC
Confidence            96544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=92.64  E-value=0.31  Score=41.55  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      |.|++||+| ++.+|..+++.|.+.|++|++++.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~   36 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYA   36 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence            467899999 566899999999999999988764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.60  E-value=0.29  Score=42.51  Aligned_cols=33  Identities=9%  Similarity=-0.049  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        13 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A           13 GKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            57899999 5668999999999999999998654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.59  E-value=0.2  Score=42.97  Aligned_cols=33  Identities=15%  Similarity=0.143  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHH-cCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHE-MGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~-~G~~vi~v~~~  103 (313)
                      +++|||+| +|.+|..+++.|.+ .|++|++++.+
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~   38 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   38 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            57899999 56689999999999 99999998654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=92.58  E-value=0.3  Score=41.96  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=28.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5678999999999999999998654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.58  E-value=0.26  Score=42.78  Aligned_cols=32  Identities=16%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~   60 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYA   60 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999 566899999999999999998764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=92.57  E-value=0.14  Score=47.11  Aligned_cols=35  Identities=9%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            35789999999999999999999999999997544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.57  E-value=0.19  Score=41.56  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +||||+| +|.+|..+++.|.+.|++|++++.++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            3799999 588999999999999999999976543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.57  E-value=0.14  Score=47.17  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5689999999999999999999999999997654

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.55  E-value=0.18  Score=44.03  Aligned_cols=60  Identities=12%  Similarity=0.079  Sum_probs=43.7

Q ss_pred             EEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +|||+|+ |.+|..+++.|. .|++|++++....           .+..       +..+.+.+.++++..++|+|+-.-
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-----------~~~~-------D~~d~~~~~~~~~~~~~d~vih~a   62 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-----------EFCG-------DFSNPKGVAETVRKLRPDVIVNAA   62 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-----------SSCC-------CTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-----------cccc-------cCCCHHHHHHHHHhcCCCEEEECc
Confidence            7999994 889999999999 8999999854321           1111       234566777777766899988654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=92.55  E-value=0.79  Score=42.27  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=32.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+++|+|+|..+..+++.++.+||+|+++|+.+.
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~  238 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPV  238 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh
Confidence            56899999999999999999999999999987654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=92.53  E-value=0.28  Score=42.14  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=29.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            57899999 56689999999999999999886543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.50  E-value=0.2  Score=43.74  Aligned_cols=32  Identities=13%  Similarity=0.067  Sum_probs=29.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEE-Eec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVA-VYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~-v~~  102 (313)
                      +++|+|+|+|+.|+..+..|++.|++|++ ++.
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~   36 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK   36 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67899999999999999999999999999 754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=92.44  E-value=0.15  Score=44.75  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=29.4

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |||||+|+ |.+|..+++.|.+.|++|+++..++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            57999995 88999999999999999999865443

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=92.42  E-value=0.15  Score=47.12  Aligned_cols=36  Identities=6%  Similarity=0.039  Sum_probs=30.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCc--EEEEecCCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIP--CVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~--vi~v~~~~~  105 (313)
                      |+++|+|+|+|..|+..+..|++.|++  |++++..+.
T Consensus         1 M~~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~   38 (410)
T 3ef6_A            1 MATHVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPH   38 (410)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSS
T ss_pred             CCCCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCC
Confidence            467999999999999999999999998  888876543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.42  E-value=0.31  Score=42.41  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=28.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r   63 (273)
T 3uf0_A           31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGR   63 (273)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999 566899999999999999999873

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=92.41  E-value=0.34  Score=42.26  Aligned_cols=34  Identities=21%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   58 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDA   58 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999886543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=92.40  E-value=0.32  Score=44.36  Aligned_cols=32  Identities=9%  Similarity=0.061  Sum_probs=28.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +++|||+| +|.+|..+++.|.+.|++|++++.
T Consensus        11 ~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r   43 (404)
T 1i24_A           11 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   43 (404)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEe
Confidence            67899999 677999999999999999999864

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=92.40  E-value=0.37  Score=41.43  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             cccEEEEEcC---CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANR---GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~---g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|+|||+|+   +.+|..+++.|.+.|++|++++.+
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~   49 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG   49 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecc
Confidence            3689999995   468999999999999999998654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=92.39  E-value=0.38  Score=40.45  Aligned_cols=75  Identities=7%  Similarity=-0.053  Sum_probs=44.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      ||++||+| ++.+|..+++.|.+.|++|++++.+......... +......+.     -+..+.+.+.+++.+.  ..|.
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~D~~~~~~v~~~~~~~~~~~d~   75 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRA-----RDLASHQEVEQLFEQLDSIPST   75 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEE-----CCTTCHHHHHHHHHSCSSCCSE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEe-----ecCCCHHHHHHHHHHHhhcCCE
Confidence            46799999 5668999999999999999998754432211111 111111111     1234566666666543  2477


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++-.
T Consensus        76 lv~~   79 (230)
T 3guy_A           76 VVHS   79 (230)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7754

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.37  E-value=0.3  Score=42.46  Aligned_cols=35  Identities=9%  Similarity=-0.041  Sum_probs=29.7

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ....|++||+| ++.+|..+++.|.+.|++|++++.
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            33468899999 566899999999999999999865

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=92.36  E-value=0.27  Score=42.26  Aligned_cols=33  Identities=9%  Similarity=0.015  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGATVYITGRH   38 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5668999999999999999988654

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=92.35  E-value=0.12  Score=48.29  Aligned_cols=35  Identities=6%  Similarity=0.062  Sum_probs=29.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcC--CcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G--~~vi~v~~~~  104 (313)
                      |.|+|+|+|+|..|+..++.|++++  ++|++++.++
T Consensus         1 M~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            5689999999999999999999876  7899997554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=92.34  E-value=0.48  Score=40.39  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=28.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCc-EEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIP-CVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~-vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++ |++++.+.
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            57899999 566899999999999998 77776544

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=92.31  E-value=0.34  Score=41.58  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   48 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQ   48 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=92.30  E-value=0.23  Score=44.59  Aligned_cols=72  Identities=8%  Similarity=-0.149  Sum_probs=47.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcC-----CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC-C
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMG-----IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG-C  144 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G-----~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~-i  144 (313)
                      ++|||+| +|.+|..+++.|.+.|     ++|++++........ ....-+.+..       +..+.+.+.++++..+ +
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~-~~~~~~~~~~-------Dl~d~~~~~~~~~~~~~~   73 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWH-EDNPINYVQC-------DISDPDDSQAKLSPLTDV   73 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCC-CSSCCEEEEC-------CTTSHHHHHHHHTTCTTC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCcccc-ccCceEEEEe-------ecCCHHHHHHHHhcCCCC
Confidence            5799999 6889999999999999     999998755432210 0000112222       2345667777776555 8


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |+|+-.-
T Consensus        74 d~vih~a   80 (364)
T 2v6g_A           74 THVFYVT   80 (364)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9888653

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.29  E-value=0.24  Score=43.19  Aligned_cols=76  Identities=11%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhc--CceEEccCCCCCCCcCCHHHHHHHHHhc-----
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLA--DESVCIGEAPSSQSYLLIPNVLSAAISR-----  142 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~a--d~~~~v~~~~~~~~~~~~~~l~~~~~~~-----  142 (313)
                      +++||+| ++.+|..+++.|.+.|++|++++.+........ .+.  .....+.     -+..+.+.+.+++.+.     
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLT-----LDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEE-----CCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEE-----cCCCCHHHHHHHHHHHHHHhC
Confidence            7899999 455899999999999999999865432211111 111  1222221     1234455666665542     


Q ss_pred             CCCEEeeccC
Q 021372          143 GCTMLHPGYG  152 (313)
Q Consensus       143 ~id~vip~~g  152 (313)
                      ++|+++-.-|
T Consensus        97 ~iD~lvnnAG  106 (272)
T 2nwq_A           97 TLRGLINNAG  106 (272)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            5898886543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.28  E-value=0.4  Score=41.35  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=30.2

Q ss_pred             cccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+|++   .+|+.+++.|.+.|.+|++.+.+..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            36889999953   5899999999999999999876543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.25  E-value=0.12  Score=43.75  Aligned_cols=33  Identities=12%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEE-Ee
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVA-VY  101 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~-v~  101 (313)
                      ++|+||.|+|.|.+|..+++.+.+.|++|++ ++
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~   54 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANS   54 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            3467899999999999999999999999998 43

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.22  E-value=0.44  Score=41.21  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ...|++||+| ++.+|..+++.|.+.|++|++++..
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            3468899999 5568999999999999999987643

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=92.17  E-value=0.45  Score=42.33  Aligned_cols=34  Identities=9%  Similarity=0.055  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcC-------CcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMG-------IPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G-------~~vi~v~~~~  104 (313)
                      +++|||+| +|.+|..+++.|.+.|       ++|++++...
T Consensus        14 ~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~   55 (342)
T 2hrz_A           14 GMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ   55 (342)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccC
Confidence            56899999 6889999999999999       7898886543

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=92.15  E-value=0.52  Score=41.74  Aligned_cols=74  Identities=16%  Similarity=-0.025  Sum_probs=44.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcC--CcEEEEecCCCc--chhhhhh--cCceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMG--IPCVAVYSTIDK--DALHVKL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G--~~vi~v~~~~~~--~~~~~~~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      ++|||+| +|.+|..+++.|.+.|  ++|++++.....  ......+  ......+.     .+..+.+.+.+++  .++
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~--~~~   76 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVK-----GDVADYELVKELV--RKV   76 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEE-----CCTTCHHHHHHHH--HTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEE-----cCCCCHHHHHHHh--hCC
Confidence            5799999 6889999999999986  889888643211  1110111  11111111     1234556666666  579


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |+|+-.-+
T Consensus        77 d~vih~A~   84 (336)
T 2hun_A           77 DGVVHLAA   84 (336)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99886543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.13  E-value=0.22  Score=45.32  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=51.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|+|.+|+..++.++.+|.+|++++.++........+ ++..+.    ...+  ...+.+.++....++|+|+-
T Consensus       190 g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~----~~~~--~~~~~v~~~~~g~g~D~vid  263 (363)
T 3uog_A          190 GDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGIN----RLEE--DWVERVYALTGDRGADHILE  263 (363)
T ss_dssp             TCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEE----TTTS--CHHHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEc----CCcc--cHHHHHHHHhCCCCceEEEE
Confidence            5789999999999999999999999999987554433333333 343332    1111  22556666665668999997


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus       264 ~~g  266 (363)
T 3uog_A          264 IAG  266 (363)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            654

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=92.13  E-value=0.27  Score=42.10  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   39 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5668999999999999999988544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.13  E-value=0.24  Score=45.26  Aligned_cols=77  Identities=13%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|+..++.++.+|. +|++++.++........+ ++..+  +.  ...+....+.+.++... ++|+++
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~--~~~~~~~~~~i~~~~~g-g~D~vi  268 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFV--NP--KDHDKPIQEVIVDLTDG-GVDYSF  268 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEE--CG--GGCSSCHHHHHHHHTTS-CBSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEE--cc--ccCchhHHHHHHHhcCC-CCCEEE
Confidence            5789999999999999999999999 788887666555444444 33333  21  11011123445554444 899999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       269 d~~g  272 (378)
T 3uko_A          269 ECIG  272 (378)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            6543

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=92.12  E-value=0.29  Score=47.35  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      ++++|+|.|..|..+++.|.+.|++|++++.++......   . ..+ .++      ..+. .+++.+.-.+.|+++...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~---~-~~i-~gD------~t~~-~~L~~agi~~ad~vi~~~  416 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCND---H-VVV-YGD------ATVG-QTLRQAGIDRASGIIVTT  416 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCS---S-CEE-ESC------SSSS-THHHHHTTTSCSEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhc---C-CEE-EeC------CCCH-HHHHhcCccccCEEEEEC
Confidence            789999999999999999999999999998877654322   1 333 321      1222 233444445688888776


Q ss_pred             CcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          152 GFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      +....+......+.+.|..     ...+..+.|... .+.++++|+..
T Consensus       417 ~~d~~ni~~~~~ak~l~~~-----~~iiar~~~~~~-~~~l~~~G~d~  458 (565)
T 4gx0_A          417 NDDSTNIFLTLACRHLHSH-----IRIVARANGEEN-VDQLYAAGADF  458 (565)
T ss_dssp             SCHHHHHHHHHHHHHHCSS-----SEEEEEESSTTS-HHHHHHHTCSE
T ss_pred             CCchHHHHHHHHHHHHCCC-----CEEEEEECCHHH-HHHHHHcCCCE
Confidence            4332233333444454432     112223333332 34566777653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=92.11  E-value=0.47  Score=41.71  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            368899999 5668999999999999999988644

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=92.11  E-value=1.2  Score=40.00  Aligned_cols=147  Identities=11%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             cccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .|.||.|+|.|.+|.. ++.++++. +++++.+. +.+... ...+++++- ++     .-|.+.+.++   ...++|+|
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~-d~~~~~-a~~~a~~~g-~~-----~~y~d~~ell---~~~~iDaV   90 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIA-SRDLTR-AREMADRFS-VP-----HAFGSYEEML---ASDVIDAV   90 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEE-CSSHHH-HHHHHHHHT-CS-----EEESSHHHHH---HCSSCSEE
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEE-CCCHHH-HHHHHHHcC-CC-----eeeCCHHHHh---cCCCCCEE
Confidence            3679999999999864 67888886 77887765 333221 122332211 10     1134555554   45789999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC-CCHHHHHHHHH--HhCCcE
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLAD--ELGFPV  224 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~-~~~~~~~~~~~--~lg~P~  224 (313)
                      +.... ......++..+.+.|.+++.--|-+ ....+=..+.+.+++.|+..--.+.... .....+.+.++  .+|-+.
T Consensus        91 ~I~tP-~~~H~~~~~~al~aGkhVl~EKPla-~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG~i~  168 (350)
T 4had_A           91 YIPLP-TSQHIEWSIKAADAGKHVVCEKPLA-LKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGSLR  168 (350)
T ss_dssp             EECSC-GGGHHHHHHHHHHTTCEEEECSCCC-SSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTSSEE
T ss_pred             EEeCC-CchhHHHHHHHHhcCCEEEEeCCcc-cchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCCCcce
Confidence            87642 2233455555567898776321111 1122234456778888877544431122 22344555554  467666


Q ss_pred             EEeec
Q 021372          225 MIKAT  229 (313)
Q Consensus       225 VvKP~  229 (313)
                      -+.-.
T Consensus       169 ~i~~~  173 (350)
T 4had_A          169 HVQGA  173 (350)
T ss_dssp             EEEEE
T ss_pred             eeeEE
Confidence            66543

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=92.10  E-value=0.28  Score=42.71  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999 56689999999999999999986543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.10  E-value=0.39  Score=41.75  Aligned_cols=33  Identities=6%  Similarity=-0.054  Sum_probs=28.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            368899999 566899999999999999999864

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.09  E-value=0.25  Score=43.05  Aligned_cols=34  Identities=9%  Similarity=0.006  Sum_probs=28.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999 5668999999999999999988644

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.05  E-value=0.24  Score=44.56  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             ccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRG-EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||+|++ .+|..+++.++.+|.+|++++.+.........+ ++..+..    ...  ...+.+.+.....++|+++
T Consensus       145 g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~----~~~--~~~~~~~~~~~~~g~Dvvi  218 (340)
T 3gms_A          145 NDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDT----STA--PLYETVMELTNGIGADAAI  218 (340)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEET----TTS--CHHHHHHHHTTTSCEEEEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeC----Ccc--cHHHHHHHHhCCCCCcEEE
Confidence            5789999976 899999999999999999987665544433333 3333321    111  2245555555556899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       219 d~~  221 (340)
T 3gms_A          219 DSI  221 (340)
T ss_dssp             ESS
T ss_pred             ECC
Confidence            543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.05  E-value=0.65  Score=41.99  Aligned_cols=121  Identities=16%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC--ceEEccCCCCCCC-cCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD--ESVCIGEAPSSQS-YLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad--~~~~v~~~~~~~~-~~~~~~l~~~~~~~~id~  146 (313)
                      .++|||+| +|.+|..+++.|.+.|++|++++.+...... ..+..  ....+.     .+ ..+.+.+.++++  ++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~l~~~~~v~~v~-----~D~l~d~~~l~~~~~--~~d~   76 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAIPNVTLFQ-----GPLLNNVPLMDTLFE--GAHL   76 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHHTSTTEEEEE-----SCCTTCHHHHHHHHT--TCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH-HHHhhcCCcEEEE-----CCccCCHHHHHHHHh--cCCE
Confidence            57899999 6889999999999999999998755443210 11111  111111     12 345566666653  5898


Q ss_pred             EeeccCcC--ccc---HHHHHHHHHcC-Cc-eeCCCHHH---------HHHhCCHHHHHHHHHHCCCCC
Q 021372          147 LHPGYGFL--AEN---AVFVEMCREHG-IN-FIGPNPDS---------IRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       147 vip~~g~~--~e~---~~~~~~l~~~g-i~-~~g~~~~~---------i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      |+...+..  ..+   ..+.+.+.+.| +. ++..+...         ..-...|....+++++.|+++
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~  145 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPS  145 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCE
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCE
Confidence            88543221  112   23455555666 52 22111110         011234667777777766553

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.03  E-value=0.3  Score=42.34  Aligned_cols=32  Identities=16%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r   43 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGFRVVVHYR   43 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999 566899999999999999999865

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=92.01  E-value=0.31  Score=42.25  Aligned_cols=33  Identities=18%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        28 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   61 (266)
T 3uxy_A           28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRA   61 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999 5668999999999999999988644

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=91.97  E-value=0.2  Score=44.42  Aligned_cols=35  Identities=11%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +++|+|+|+|+.|+..+..|++.|++|++++..+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   39 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE   39 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            57899999999999999999999999999976543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=91.95  E-value=0.33  Score=42.02  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=27.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      ++++||+| ++.+|..+++.|.+.|++|++++
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~   57 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNY   57 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            57899999 56689999999999999998774

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=91.90  E-value=0.69  Score=41.98  Aligned_cols=144  Identities=10%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +.+|.|+|.|.+|...++++++. +++++.+. +.+....  ..+.. +  +    ...|.+.+.++   .+.++|+|+.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~-d~~~~~~--~~a~~-~--g----~~~~~~~~~ll---~~~~~D~V~i   71 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVF-DILAEKR--EAAAQ-K--G----LKIYESYEAVL---ADEKVDAVLI   71 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEE-CSSHHHH--HHHHT-T--T----CCBCSCHHHHH---HCTTCCEEEE
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEE-cCCHHHH--HHHHh-c--C----CceeCCHHHHh---cCCCCCEEEE
Confidence            46899999999999999999887 78887664 3332221  11111 0  0    11244555544   4567999987


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--HhCCcEEE
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--ELGFPVMI  226 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~lg~P~Vv  226 (313)
                      ... .......+..+.+.|..++.--+-+ ....+=..+.+++++.|+..--.+. +.......+.+.++  .+|-+..+
T Consensus        72 ~tp-~~~h~~~~~~al~aGkhVl~EKP~a-~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~~  149 (359)
T 3e18_A           72 ATP-NDSHKELAISALEAGKHVVCEKPVT-MTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHL  149 (359)
T ss_dssp             CSC-GGGHHHHHHHHHHTTCEEEEESSCC-SSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTTSSEEEE
T ss_pred             cCC-cHHHHHHHHHHHHCCCCEEeeCCCc-CCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCCCCeEEE
Confidence            542 1223445555557788775311100 0111123355667788876543321 11122334445444  36766666


Q ss_pred             eec
Q 021372          227 KAT  229 (313)
Q Consensus       227 KP~  229 (313)
                      ...
T Consensus       150 ~~~  152 (359)
T 3e18_A          150 ESR  152 (359)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=91.87  E-value=0.18  Score=46.17  Aligned_cols=34  Identities=15%  Similarity=0.063  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR   39 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4689999999999999999999999999997554

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=91.84  E-value=0.34  Score=40.99  Aligned_cols=33  Identities=12%  Similarity=0.030  Sum_probs=28.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCC-------cEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGI-------PCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~-------~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|+       +|++++.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~   42 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   42 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCC
Confidence            57899999 66789999999999999       88887654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=91.81  E-value=0.18  Score=41.40  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=45.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||+| +|.+|..+++.++..|.+|++++.+.........+ ++..  ++  ...  ....+.+.+.....++|.++
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~--~d--~~~--~~~~~~~~~~~~~~~~D~vi  112 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYV--GD--SRS--VDFADEILELTDGYGVDVVL  112 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEE--EE--TTC--STHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEE--ee--CCc--HHHHHHHHHHhCCCCCeEEE
Confidence            57899999 68899999999999999998886544322221122 2222  22  111  12234454444344689888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       113 ~~~  115 (198)
T 1pqw_A          113 NSL  115 (198)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.81  E-value=0.74  Score=41.08  Aligned_cols=35  Identities=14%  Similarity=-0.033  Sum_probs=31.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcC-CcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMG-IPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G-~~vi~v~~~~  104 (313)
                      |+++|.|+|.|..|..+++.|.+.| ++|++++.++
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            5689999999999999999999999 9999987654

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*

Probab=91.78  E-value=1.9  Score=38.26  Aligned_cols=101  Identities=11%  Similarity=-0.021  Sum_probs=51.4

Q ss_pred             cccEEEEEcCCHh-----HHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcCceEEccCCCCCC-C-----------cCC
Q 021372           70 RQEKILVANRGEI-----AVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQ-S-----------YLL  131 (313)
Q Consensus        70 ~~~~ILIig~g~~-----a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~v~~~~~~~-~-----------~~~  131 (313)
                      |.+|||++..+..     ...++++|.+.|++|.++............ ..-..+.++...... .           ...
T Consensus         5 m~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (364)
T 1f0k_A            5 QGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNA   84 (364)
T ss_dssp             --CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHHH
T ss_pred             CCcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHHH
Confidence            3368888874432     347889999999999998754432111111 111222232111000 0           012


Q ss_pred             HHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCcee
Q 021372          132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       132 ~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ...+.+++++.++|+|+......  ...........+++++
T Consensus        85 ~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v  123 (364)
T 1f0k_A           85 WRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVV  123 (364)
T ss_dssp             HHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEE
Confidence            34466777888999999653211  1111222334677765

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.75  E-value=0.63  Score=39.98  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~   40 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYN   40 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999 556899999999999999998843

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.72  E-value=0.16  Score=45.95  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|...++.++.+|. +|++++.+.........+ ++..+  +  ....  ...+.+.++....++|+++
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi--~--~~~~--~~~~~v~~~t~g~g~D~v~  240 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII--N--YKNG--DIVEQILKATDGKGVDKVV  240 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE--C--GGGS--CHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE--c--CCCc--CHHHHHHHHcCCCCCCEEE
Confidence            5789999999999999999999999 788886554433333333 33333  2  1111  2245566655556799998


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       241 d~~g  244 (352)
T 3fpc_A          241 IAGG  244 (352)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            6543

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=91.71  E-value=0.33  Score=41.53  Aligned_cols=75  Identities=12%  Similarity=-0.005  Sum_probs=45.4

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc-----CC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISR-----GC  144 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~-----~i  144 (313)
                      |++||+| ++.+|..+++.|.+.|++|++++.+....... ..+......+.     -+..+.+.+.+++.+.     ++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ-----LDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEE-----CCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEE-----cCCCCHHHHHHHHHHHHHhCCCC
Confidence            4789999 56689999999999999999986543221111 11112222221     1134455666665532     68


Q ss_pred             CEEeecc
Q 021372          145 TMLHPGY  151 (313)
Q Consensus       145 d~vip~~  151 (313)
                      |.++-.-
T Consensus        76 D~lvnnA   82 (248)
T 3asu_A           76 DILVNNA   82 (248)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            9888643

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=91.68  E-value=0.39  Score=40.87  Aligned_cols=32  Identities=19%  Similarity=0.202  Sum_probs=28.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r   36 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYA   36 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999 566899999999999999998864

>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*

Probab=91.62  E-value=0.11  Score=51.04  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             HHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC-CC---CCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCC
Q 021372          159 VFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP-TV---PGSDGLLQSTEEAVKLADELGFPVMIKATAGGGG  234 (313)
Q Consensus       159 ~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip-~p---~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg  234 (313)
                      .+.+.+++.++.++.|....+  ..||..+.-+.+.+  | .|   +++  ...+. ++    ..-  .+|+||..|..|
T Consensus       474 ~ll~~l~~~~v~iieP~~~~l--lsNKailalLw~l~--p~hp~LLpT~--f~~~~-~l----~~~--~yV~KPi~gReG  540 (619)
T 2io8_A          474 RLIDVLLRPEVLVFEPLWTVI--PGNKAILPILWSLF--PHHRYLLDTD--FTVND-EL----VKT--GYAVKPIAGRCG  540 (619)
T ss_dssp             CHHHHHTCTTCEEESCGGGGT--TTSTTHHHHHHHHS--TTCTTCCCEE--SSCCH-HH----HHH--CEEEEETTCCTT
T ss_pred             HHHHHHHhCCCEEECHHHHHH--hhhHHHHHHHHHhC--CCCCCCCCee--ecCCc-cc----ccC--CEEEccCCCCCC
Confidence            466777777899996555544  99999998888864  3 33   553  22332 21    122  489999999999


Q ss_pred             ccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCC----cEEEEEEEEcCCCCEEEEeecc
Q 021372          235 RGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP----RHIEFQVLADKYGNVVHFGERD  297 (313)
Q Consensus       235 ~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~----~e~~v~v~~d~~G~vv~~~~r~  297 (313)
                      .||.+++..++.   +.    .....+...++|.|+|++=+    ..+.+.++.- .|+...++-|.
T Consensus       541 ~nV~i~~~~~~~---~~----~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~v-gg~~aG~~~R~  599 (619)
T 2io8_A          541 SNIDLVSHHEEV---LD----KTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTV-GGNYGGTCLRG  599 (619)
T ss_dssp             TTCEEECTTSCE---EE----ECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEE-TTEEEEEEEEE
T ss_pred             CCEEEEeCCChh---Hh----hccccccCCCeEEEEecCCCCcCCcceEEEEEEE-CCEEEEEEEec
Confidence            999998752221   00    01112345789999999851    3333555554 34666665554

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.59  E-value=0.49  Score=41.27  Aligned_cols=34  Identities=12%  Similarity=0.114  Sum_probs=28.7

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+++||+| ++.+|..+++.|.+.|++|++++.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   77 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   77 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCC
Confidence            357899999 6678999999999999999987533

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=91.57  E-value=0.34  Score=41.81  Aligned_cols=118  Identities=12%  Similarity=0.085  Sum_probs=62.6

Q ss_pred             EEEEEcC-CHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVANR-GEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig~-g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +|||+|+ |.+|..+++.|.+.  |++|++++.++..........-..+..       +..+.+.+.++++  ++|.|+-
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------D~~d~~~~~~~~~--~~d~vi~   71 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQA-------DYGDEAALTSALQ--GVEKLLL   71 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEEC-------CTTCHHHHHHHTT--TCSEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEc-------CCCCHHHHHHHHh--CCCEEEE
Confidence            4899994 88999999999998  999999876543221111111122222       2345566666553  5788875


Q ss_pred             ccCcCc-c----cHHHHHHHHHcCCc-eeCCCHHH-----HHHhCCHHHHHHHHHHCCCCC
Q 021372          150 GYGFLA-E----NAVFVEMCREHGIN-FIGPNPDS-----IRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       150 ~~g~~~-e----~~~~~~~l~~~gi~-~~g~~~~~-----i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      ..+... .    ...+.+.+.+.|+. ++..+...     ..-...|....+++++.|+++
T Consensus        72 ~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~sK~~~e~~~~~~~~~~  132 (286)
T 2zcu_A           72 ISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVY  132 (286)
T ss_dssp             CC--------CHHHHHHHHHHHHTCCEEEEEEETTTTTCCSTTHHHHHHHHHHHHHHCSEE
T ss_pred             eCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCcchhHHHHHHHHHHHHHcCCCe
Confidence            432110 1    12344555555642 22111100     012234666667777767653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=91.56  E-value=0.22  Score=47.26  Aligned_cols=36  Identities=17%  Similarity=0.032  Sum_probs=31.5

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcC---CcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMG---IPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G---~~vi~v~~~~  104 (313)
                      +|.++|+|+|+|+.|+..+..|++.|   ++|++++..+
T Consensus        33 ~m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           33 RWGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSS
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence            34589999999999999999999988   9999997654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.55  E-value=0.2  Score=44.90  Aligned_cols=77  Identities=18%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ..++|||+| +|.+|+.+++.++.+|.+|++++.+.........+ ++..+..    ..+  ...+.+.+.....++|++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~----~~~--~~~~~~~~~~~~~g~D~v  221 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINA----SKE--DILRQVLKFTNGKGVDAS  221 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEET----TTS--CHHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeC----CCc--hHHHHHHHHhCCCCceEE
Confidence            367899999 79999999999999999999987654433333333 3333321    111  224556665555679999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..+
T Consensus       222 id~~g  226 (334)
T 3qwb_A          222 FDSVG  226 (334)
T ss_dssp             EECCG
T ss_pred             EECCC
Confidence            86554

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=91.53  E-value=0.53  Score=40.29  Aligned_cols=64  Identities=13%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +|||+| +|.+|..+++.|.+ |++|++++.+....       .. +..+       ..+.+.+.++++..++|.|+-.-
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~-------~~-~~~D-------l~~~~~~~~~~~~~~~d~vi~~a   65 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ-------GG-YKLD-------LTDFPRLEDFIIKKRPDVIINAA   65 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT-------TC-EECC-------TTSHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC-------CC-ceec-------cCCHHHHHHHHHhcCCCEEEECC
Confidence            699999 68899999999985 99999987554211       11 3232       34566777777666799998654


Q ss_pred             C
Q 021372          152 G  152 (313)
Q Consensus       152 g  152 (313)
                      +
T Consensus        66 ~   66 (273)
T 2ggs_A           66 A   66 (273)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.51  E-value=0.62  Score=40.45  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++..
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999 5668999999999999999988544

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=91.49  E-value=1.9  Score=38.00  Aligned_cols=28  Identities=18%  Similarity=0.162  Sum_probs=24.5

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEE
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCV   98 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi   98 (313)
                      ..||+|+|. |..|..+++.+++.|++++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V   35 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMV   35 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence            578999996 8899999999999999854

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=91.48  E-value=0.73  Score=43.30  Aligned_cols=149  Identities=14%  Similarity=0.056  Sum_probs=81.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCc-------eEEccC---------CCCCCCcCCHH
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADE-------SVCIGE---------APSSQSYLLIP  133 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~-------~~~v~~---------~~~~~~~~~~~  133 (313)
                      +.||.|+|.|.+|..+++.+.+. |++++.+.+ .+.... ...+.+       ...++.         .....-+.+.+
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D-~~~era-~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e  100 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSA-RRLPNT-FKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND  100 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEEC-SSTHHH-HHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEe-CCHHHH-HHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence            46899999999999999888764 778877763 332211 111110       000000         00000123444


Q ss_pred             HHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccCCCHHHH
Q 021372          134 NVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLLQSTEEA  213 (313)
Q Consensus       134 ~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~  213 (313)
                      .   ++....+|+|+...+.......++....+.|..++.-+.+.  ....=..+.++++++|+..-..+-......-++
T Consensus       101 e---LL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l--~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eL  175 (446)
T 3upl_A          101 L---ILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEA--DVTIGPYLKAQADKQGVIYSLGAGDEPSSCMEL  175 (446)
T ss_dssp             H---HHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHH--HHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHH
T ss_pred             H---HhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCccc--CHHHHHHHHHHHHHhCCeeeecCCcchHHHHHH
Confidence            4   44456799998543211112345555567899988434432  122345778888999976532210011224466


Q ss_pred             HHHHHHhCCcEEE
Q 021372          214 VKLADELGFPVMI  226 (313)
Q Consensus       214 ~~~~~~lg~P~Vv  226 (313)
                      .++++..||.+|.
T Consensus       176 v~~a~~~G~~~v~  188 (446)
T 3upl_A          176 IEFVSALGYEVVS  188 (446)
T ss_dssp             HHHHHHTTCEEEE
T ss_pred             HHHHHhCCCeEEE
Confidence            7888889998664

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=91.46  E-value=0.32  Score=43.61  Aligned_cols=33  Identities=12%  Similarity=0.098  Sum_probs=28.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++...+
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~   38 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRD   38 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCc
Confidence            57899999 5668999999999999999887543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.45  E-value=0.47  Score=42.80  Aligned_cols=77  Identities=13%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHH---hcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAI---SRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~---~~~id~  146 (313)
                      ..+|||+|+|.+|+.+++.++.+|.+|++++.++........+ ++..+..    .+ .....+.+.+...   ..++|+
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~----~~-~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVV----DP-AKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEEC----CT-TTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcC----cc-cccHHHHHHHHhccccCCCCCE
Confidence            5789999999999999999999999988876544433322222 3443321    11 0123566666554   367999


Q ss_pred             EeeccC
Q 021372          147 LHPGYG  152 (313)
Q Consensus       147 vip~~g  152 (313)
                      ++-..+
T Consensus       244 vid~~g  249 (352)
T 1e3j_A          244 TIDCSG  249 (352)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            996543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=91.45  E-value=0.36  Score=42.97  Aligned_cols=114  Identities=14%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEe-cCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVY-STIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~-~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +.+|.|+|.|.+|.. +++.+.+. |++++.+. .++...   ..++... -+   +   -+.+.+.+     ..++|+|
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~---~~~~~~~-g~---~---~~~~~~~l-----~~~~D~V   69 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA---LPICESW-RI---P---YADSLSSL-----AASCDAV   69 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH---HHHHHHH-TC---C---BCSSHHHH-----HTTCSEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH---HHHHHHc-CC---C---ccCcHHHh-----hcCCCEE
Confidence            468999999999986 88888774 77877444 333221   1122211 01   0   13344443     3579999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      +.... .......+..+.+.|.+++.--+-+. ...+-..+.+.+++.|+..-.
T Consensus        70 ~i~tp-~~~h~~~~~~al~~G~~v~~eKP~~~-~~~~~~~l~~~a~~~g~~~~~  121 (319)
T 1tlt_A           70 FVHSS-TASHFDVVSTLLNAGVHVCVDKPLAE-NLRDAERLVELAARKKLTLMV  121 (319)
T ss_dssp             EECSC-TTHHHHHHHHHHHTTCEEEEESSSCS-SHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEeCC-chhHHHHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCeEEE
Confidence            86542 11223444445567887653111110 111223456677888876543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=91.42  E-value=0.52  Score=40.22  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   48 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   48 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcc
Confidence            57899999 66789999999999999999987543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=91.37  E-value=0.15  Score=44.89  Aligned_cols=30  Identities=23%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      |++|||+| +|.+|..+++.|.+.| .++++.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~   31 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVID   31 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-CEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-CEEEEE
Confidence            36899999 5789999999999999 555554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.36  E-value=0.42  Score=41.14  Aligned_cols=31  Identities=19%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~   35 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINY   35 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEc
Confidence            57899999 56689999999999999999863

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.36  E-value=0.23  Score=44.13  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+|+|+|+|..|+.++..|.++|++|++++..+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~   36 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEA   36 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4689999999999999999999999999997554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.33  E-value=0.41  Score=43.79  Aligned_cols=35  Identities=11%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|+|+|+|.+|..+++.|+..|.+|++++.++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999999999999999999999999998875543

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=91.31  E-value=0.23  Score=44.18  Aligned_cols=36  Identities=11%  Similarity=0.107  Sum_probs=29.4

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|+++|||+| +|.+|..+++.|.+.|++|+++..+.
T Consensus         7 ~~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~   43 (338)
T 2rh8_A            7 IGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDP   43 (338)
T ss_dssp             --CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCc
Confidence            3568899999 68899999999999999998765443

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=91.31  E-value=0.16  Score=44.66  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ++.++|+|+|+|+.|+..+..|++.|++|++++.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~   36 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG   36 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEcc
Confidence            3467899999999999999999999999999973

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=91.29  E-value=0.15  Score=48.23  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ||+|+|||+|..|+..+..|.+.|++|+++....
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence            6889999999999999999999999999996543

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=91.29  E-value=0.33  Score=41.78  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=29.9

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+++||+|++   .+|..+++.|.+.|++|++++.+..
T Consensus        20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            5789999965   7999999999999999999865543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.28  E-value=0.27  Score=46.53  Aligned_cols=115  Identities=7%  Similarity=0.071  Sum_probs=67.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .++|+|+|+|.+|+.+++.|.+ +++|.++..+........ .+.+..+..+      +..+.+-|.+. .-...|+++.
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~~r~~~la~~l~~~~Vi~G------D~td~~~L~ee-~i~~~D~~ia  306 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNLQRAEKLSEELENTIVFCG------DAADQELLTEE-NIDQVDVFIA  306 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHCTTSEEEES------CTTCHHHHHHT-TGGGCSEEEE
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-cCceEEEecCHHHHHHHHHHCCCceEEec------cccchhhHhhc-CchhhcEEEE
Confidence            5799999999999999999964 689999976655333222 2333333232      23444444443 3355899997


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTV  200 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p  200 (313)
                      ..+....+....-+..++|.+-.      +. ..++....+++++.|+.+.
T Consensus       307 ~T~~De~Ni~~~llAk~~gv~kv------Ia-~vn~~~~~~l~~~~gid~v  350 (461)
T 4g65_A          307 LTNEDETNIMSAMLAKRMGAKKV------MV-LIQRGAYVDLVQGGVIDVA  350 (461)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCSEE------EE-ECSCHHHHHHHCSSSSCEE
T ss_pred             cccCcHHHHHHHHHHHHcCCccc------cc-cccccchhhhhhcccccee
Confidence            65322222333344455665432      12 2344455667788888754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.26  E-value=0.38  Score=43.35  Aligned_cols=74  Identities=9%  Similarity=0.044  Sum_probs=45.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHc-CC-cEEEEecCCCcchh-hhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEM-GI-PCVAVYSTIDKDAL-HVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~-G~-~vi~v~~~~~~~~~-~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      .++|||+| +|.+|..+++.|.+. |+ +|++++.+...... ...+. .....+.     .+..+.+.+.++++  ++|
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~-----~Dl~d~~~l~~~~~--~~D   93 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFI-----GDVRDLERLNYALE--GVD   93 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEE-----CCTTCHHHHHHHTT--TCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEE-----CCCCCHHHHHHHHh--cCC
Confidence            57899999 688999999999999 98 88888654322111 01111 1111111     12345666666654  689


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      +|+-.-
T Consensus        94 ~Vih~A   99 (344)
T 2gn4_A           94 ICIHAA   99 (344)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988654

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=91.24  E-value=0.13  Score=45.27  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.1

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |+|||+|+ |.+|..+++.|.+.|++|++++....
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   35 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSS   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            47999995 88999999999999999999865443

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=91.23  E-value=0.35  Score=43.54  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|+|.+|..+++.++.+|. +|++++.+.........+++..+  +  ...++  ..+.+.++. ..++|+++-
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~--~--~~~~~--~~~~~~~~~-~~g~D~vid  237 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLV--N--PLEED--LLEVVRRVT-GSGVEVLLE  237 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEE--C--TTTSC--HHHHHHHHH-SSCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhcc--C--cCccC--HHHHHHHhc-CCCCCEEEE
Confidence            5789999999999999999999999 89988654433333233334333  2  11111  234455544 567999986


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus       238 ~~g  240 (343)
T 2dq4_A          238 FSG  240 (343)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=91.21  E-value=0.44  Score=40.19  Aligned_cols=30  Identities=17%  Similarity=0.135  Sum_probs=26.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV  100 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v  100 (313)
                      ++++||+| ++.+|..+++.|.+.|++|+++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~   31 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIH   31 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence            36899999 5678999999999999999987

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=91.20  E-value=1.1  Score=39.54  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=24.2

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEE
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCV   98 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi   98 (313)
                      .++|+|+|. |..|..+++.+++.|++++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v   35 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIV   35 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEE
Confidence            578999996 8789999999999999854

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.20  E-value=0.43  Score=41.21  Aligned_cols=32  Identities=19%  Similarity=0.354  Sum_probs=28.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~   57 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHS   57 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999 566899999999999999998863

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.19  E-value=0.34  Score=41.63  Aligned_cols=32  Identities=16%  Similarity=0.138  Sum_probs=28.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|||+| +|.+|..+++.|.+.|++|++++.
T Consensus        21 ~k~vlItGasggiG~~la~~l~~~G~~v~~~~r   53 (274)
T 1ja9_A           21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   53 (274)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999 567899999999999999998864

>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}

Probab=91.15  E-value=0.61  Score=39.36  Aligned_cols=78  Identities=15%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             cEEEEE--cCCHhHHHHHHHHHHcCC--cEEEEecCCCcchhhhhhc----CceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           72 EKILVA--NRGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLA----DESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        72 ~~ILIi--g~g~~a~~v~~al~~~G~--~vi~v~~~~~~~~~~~~~a----d~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      +||+|+  |.|..+..+++++.+.++  ++++|-+++.... ....|    -..+.+++....+...+-+.+++.+++.+
T Consensus         2 ~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~-~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~   80 (216)
T 2ywr_A            2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAY-AIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKG   80 (216)
T ss_dssp             EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCH-HHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChH-HHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcC
Confidence            578888  888899999999998877  6766655543221 12222    22332321100000011356788888899


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|.++..
T Consensus        81 ~Dliv~a   87 (216)
T 2ywr_A           81 VELVVLA   87 (216)
T ss_dssp             CCEEEES
T ss_pred             CCEEEEe
Confidence            9988764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=91.15  E-value=0.69  Score=40.01  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   55 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999 56689999999999999999986543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=91.13  E-value=0.33  Score=43.77  Aligned_cols=75  Identities=24%  Similarity=0.248  Sum_probs=50.0

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||+|+ |.+|..+++.++.+|.+|++++.+.........+ ++..+  +.  . +  ...+.+.+.....++|+++
T Consensus       160 g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~--~~--~-~--~~~~~v~~~~~~~g~Dvvi  232 (342)
T 4eye_A          160 GETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVL--PL--E-E--GWAKAVREATGGAGVDMVV  232 (342)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE--ES--S-T--THHHHHHHHTTTSCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEe--cC--c-h--hHHHHHHHHhCCCCceEEE
Confidence            578999997 9999999999999999999987655544433333 23333  21  1 1  1244555554445799998


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       233 d~~g  236 (342)
T 4eye_A          233 DPIG  236 (342)
T ss_dssp             ESCC
T ss_pred             ECCc
Confidence            6544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=91.10  E-value=0.46  Score=42.76  Aligned_cols=142  Identities=13%  Similarity=0.120  Sum_probs=76.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |+.||.|+|.|.+|...++++.+. +++++.+. +.+... ...++...- +     ...|.+.+.++   ...++|+|+
T Consensus         1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~-d~~~~~-~~~~~~~~~-~-----~~~~~~~~~ll---~~~~~D~V~   69 (344)
T 3ezy_A            1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAIS-DVREDR-LREMKEKLG-V-----EKAYKDPHELI---EDPNVDAVL   69 (344)
T ss_dssp             -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEE-CSCHHH-HHHHHHHHT-C-----SEEESSHHHHH---HCTTCCEEE
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEE-CCCHHH-HHHHHHHhC-C-----CceeCCHHHHh---cCCCCCEEE
Confidence            467999999999999999999885 77777554 333221 111221110 0     00134444444   456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeC-----CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc-CCCHHHHHHHHH--Hh
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIG-----PNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLAD--EL  220 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g-----~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~-~~~~~~~~~~~~--~l  220 (313)
                      .... .......+..+.+.|.+++.     .+.+..      ..+.+++++.|+..-..+... ......+.+..+  .+
T Consensus        70 i~tp-~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~------~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~i  142 (344)
T 3ezy_A           70 VCSS-TNTHSELVIACAKAKKHVFCEKPLSLNLADV------DRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTI  142 (344)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEEESCSCSCHHHH------HHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTT
T ss_pred             EcCC-CcchHHHHHHHHhcCCeEEEECCCCCCHHHH------HHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCC
Confidence            7642 12234444555577887652     222222      235566777887654332111 122334445444  36


Q ss_pred             CCcEEEeec
Q 021372          221 GFPVMIKAT  229 (313)
Q Consensus       221 g~P~VvKP~  229 (313)
                      |-+..+.-.
T Consensus       143 G~i~~~~~~  151 (344)
T 3ezy_A          143 GKPHVLRIT  151 (344)
T ss_dssp             SSEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            766666543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.09  E-value=0.27  Score=44.40  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=48.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ...+|||+|+|.+|..+++.++.+|. +|++++.++........+ ++..+  +  ...++  ..+.+.++....++|++
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~--~--~~~~~--~~~~v~~~~~g~g~D~v  240 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVI--N--PFEED--VVKEVMDITDGNGVDVF  240 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEE--C--TTTSC--HHHHHHHHTTTSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE--C--CCCcC--HHHHHHHHcCCCCCCEE
Confidence            35789999999999999999999999 899886554333322232 33333  2  11111  13444444434579999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..+
T Consensus       241 id~~g  245 (348)
T 2d8a_A          241 LEFSG  245 (348)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            86543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.09  E-value=0.5  Score=43.07  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|+..++.++.+|. +|++++.++........+ ++..+  +.  ...+....+.+.++.. .++|+|+
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~--~~~~~~~~~~v~~~~~-~g~Dvvi  270 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCL--NP--RELDKPVQDVITELTA-GGVDYSL  270 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEE--CG--GGCSSCHHHHHHHHHT-SCBSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEE--cc--ccccchHHHHHHHHhC-CCccEEE
Confidence            5789999999999999999999999 688876555444333333 34333  21  1100111344444433 3899999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       271 d~~G  274 (376)
T 1e3i_A          271 DCAG  274 (376)
T ss_dssp             ESSC
T ss_pred             ECCC
Confidence            5543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.09  E-value=0.22  Score=44.48  Aligned_cols=77  Identities=23%  Similarity=0.265  Sum_probs=50.8

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ..++|||+| +|.+|+.+++.++.+|.+|++++.++........+ ++..+..    ...  ...+.+.+.....++|++
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~----~~~--~~~~~~~~~~~~~g~Dvv  213 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDY----SHE--DVAKRVLELTDGKKCPVV  213 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEET----TTS--CHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeC----CCc--cHHHHHHHHhCCCCceEE
Confidence            357899999 79999999999999999999887554433332332 3433321    111  224556665555679999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..+
T Consensus       214 id~~g  218 (325)
T 3jyn_A          214 YDGVG  218 (325)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            86554

>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}

Probab=91.04  E-value=0.73  Score=43.52  Aligned_cols=85  Identities=13%  Similarity=0.086  Sum_probs=56.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .||+.|.+.+.....+++.|.++|.+++.+..............+..+ +         .|...+.+++++.++|+++.+
T Consensus       313 Gkrv~i~~~~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~-~---------~D~~~le~~i~~~~pDllig~  382 (458)
T 3pdi_B          313 SARTAIAADPDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVR-V---------GDLEDLEHAARAGQAQLVIGN  382 (458)
T ss_dssp             TCEEEEECCHHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEE-E---------SHHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccCcEE-e---------CCHHHHHHHHHhcCCCEEEEC
Confidence            589999998888999999999999999877654322111111122222 2         345667788888899999954


Q ss_pred             cCcCcccHHHHHHHHHcCCcee
Q 021372          151 YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .       ......+++|++++
T Consensus       383 ~-------~~~~~a~k~gip~~  397 (458)
T 3pdi_B          383 S-------HALASARRLGVPLL  397 (458)
T ss_dssp             T-------THHHHHHHTTCCEE
T ss_pred             h-------hHHHHHHHcCCCEE
Confidence            2       11234457788775

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=91.04  E-value=0.23  Score=44.93  Aligned_cols=148  Identities=9%  Similarity=-0.012  Sum_probs=78.5

Q ss_pred             cccEEEEEcCCHhHH-HHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAV-RVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~-~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      |+.||.|+|.|.+|. ..++.+++. +++++.+.+. +.   ...++.+.- .   +....|.+.+.+++   ..++|+|
T Consensus         1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~-~~---~~~~a~~~~-~---~~~~~~~~~~~ll~---~~~~D~V   69 (349)
T 3i23_A            1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDL-HV---NEKAAAPFK-E---KGVNFTADLNELLT---DPEIELI   69 (349)
T ss_dssp             CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECT-TC---CHHHHHHHH-T---TTCEEESCTHHHHS---CTTCCEE
T ss_pred             CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECC-CH---HHHHHHhhC-C---CCCeEECCHHHHhc---CCCCCEE
Confidence            567999999999987 577777765 7888766533 21   122222110 0   00011334445443   4579999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC-CCHHHHHHHHH--HhCCcE
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLAD--ELGFPV  224 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~-~~~~~~~~~~~--~lg~P~  224 (313)
                      +..... ..+...+..+.+.|.+++.--+-+ ....+=..+.+++++.|+..--.+.... .....+.+.++  .+|-+.
T Consensus        70 ~i~tp~-~~h~~~~~~al~aGk~Vl~EKP~a-~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~  147 (349)
T 3i23_A           70 TICTPA-HTHYDLAKQAILAGKSVIVEKPFC-DTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQGFLGEIN  147 (349)
T ss_dssp             EECSCG-GGHHHHHHHHHHTTCEEEECSCSC-SSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEE
T ss_pred             EEeCCc-HHHHHHHHHHHHcCCEEEEECCCc-CCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCCEE
Confidence            876421 233455555567888776321111 1111223456677888887644321111 12334555554  467666


Q ss_pred             EEeecc
Q 021372          225 MIKATA  230 (313)
Q Consensus       225 VvKP~~  230 (313)
                      .+.-..
T Consensus       148 ~~~~~~  153 (349)
T 3i23_A          148 EVETHI  153 (349)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=91.02  E-value=0.38  Score=43.16  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| ++.+|+.+++.|.+.|++|++++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~   77 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHY   77 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc
Confidence            57899999 56689999999999999999986

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.99  E-value=0.53  Score=40.11  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=27.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++
T Consensus        13 ~k~vlITGas~giG~~ia~~l~~~G~~v~~~~   44 (256)
T 3ezl_A           13 QRIAYVTGGMGGIGTSICQRLHKDGFRVVAGC   44 (256)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            68899999 56689999999999999999876

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.99  E-value=0.25  Score=43.29  Aligned_cols=34  Identities=15%  Similarity=0.301  Sum_probs=30.2

Q ss_pred             cccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANR-GEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |+++|.|+|. |.+|..+++.+.+.|++|++++.+
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~   44 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA   44 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            4579999999 999999999999999999988544

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=90.99  E-value=0.83  Score=41.21  Aligned_cols=143  Identities=10%  Similarity=0.042  Sum_probs=77.7

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.+|.. .++++++. +++++.+. +.+.......+.          ...-|.+.+.++   ...++|+|+
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~-d~~~~~~~~~~~----------~~~~~~~~~~ll---~~~~vD~V~   72 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVS-SSDASKVHADWP----------AIPVVSDPQMLF---NDPSIDLIV   72 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEE-CSCHHHHHTTCS----------SCCEESCHHHHH---HCSSCCEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEE-CCCHHHHHhhCC----------CCceECCHHHHh---cCCCCCEEE
Confidence            468999999999986 78888876 78887665 333222111111          111244555554   456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCccc-CCCHHHHHHHHH--HhCCcEE
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGL-LQSTEEAVKLAD--ELGFPVM  225 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~-~~~~~~~~~~~~--~lg~P~V  225 (313)
                      .... ...+...+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..--.+... ......+.+.++  .+|-+..
T Consensus        73 i~tp-~~~H~~~~~~al~aGkhV~~EKPla~-~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~i~~  150 (352)
T 3kux_A           73 IPTP-NDTHFPLAQSALAAGKHVVVDKPFTV-TLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVY  150 (352)
T ss_dssp             ECSC-TTTHHHHHHHHHHTTCEEEECSSCCS-CHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTCSEEE
T ss_pred             EeCC-hHHHHHHHHHHHHCCCcEEEECCCcC-CHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhcCCCCceEE
Confidence            7642 22334555555678887763221110 11112345677788887654332111 122334555554  4676666


Q ss_pred             Eeec
Q 021372          226 IKAT  229 (313)
Q Consensus       226 vKP~  229 (313)
                      +...
T Consensus       151 ~~~~  154 (352)
T 3kux_A          151 FESH  154 (352)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=90.96  E-value=0.22  Score=44.63  Aligned_cols=38  Identities=8%  Similarity=0.089  Sum_probs=32.4

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCC--cEEEEecCC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGI--PCVAVYSTI  104 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~--~vi~v~~~~  104 (313)
                      ..+|+++|.|+|.|.+|..+++.+++.|+  +|++++.++
T Consensus        29 ~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           29 KSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            44567899999999999999999999999  888886543

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=90.93  E-value=0.27  Score=44.17  Aligned_cols=34  Identities=12%  Similarity=0.129  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|+|+.|+..+..|++.|++|++++..+
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   47 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMP   47 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            4689999999999999999999999999997544

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.85  E-value=0.45  Score=41.07  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=28.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r   43 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESVNLVLHYH   43 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSCEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence            57899999 566899999999999999998754

>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}

Probab=90.83  E-value=0.85  Score=38.88  Aligned_cols=80  Identities=13%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             ccEEEEE--cCCHhHHHHHHHHHHc--CCcEEEEecCC-Ccchh--hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           71 QEKILVA--NRGEIAVRVIRTAHEM--GIPCVAVYSTI-DKDAL--HVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        71 ~~~ILIi--g~g~~a~~v~~al~~~--G~~vi~v~~~~-~~~~~--~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      |+||+|+  |.+..+..+++++.+.  ++++.+|-+++ +....  ....--..+.+++....+...+-+.+++.+++.+
T Consensus        22 ~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~  101 (229)
T 3auf_A           22 MIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYG  101 (229)
T ss_dssp             CEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcC
Confidence            4678888  8888899999999876  56777666553 32211  1111222332321111000011356788888999


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|+++..
T Consensus       102 ~Dliv~a  108 (229)
T 3auf_A          102 VDLVCLA  108 (229)
T ss_dssp             CSEEEES
T ss_pred             CCEEEEc
Confidence            9988864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=90.82  E-value=0.2  Score=45.67  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus         1 m~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   35 (394)
T 1k0i_A            1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (394)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34579999999999999999999999999996543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=90.81  E-value=0.7  Score=41.28  Aligned_cols=143  Identities=14%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .+.||.|+|.|.+|..+++++++. +++++.+.+ .+... ...++...- +     ...|.+.+.++   .+.++|+|+
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d-~~~~~-~~~~a~~~~-~-----~~~~~~~~~ll---~~~~~D~V~   72 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSS-RTLES-AQAFANKYH-L-----PKAYDKLEDML---ADESIDVIY   72 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEEC-SCSST-TCC---CCC-C-----SCEESCHHHHH---TCTTCCEEE
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEc-CCHHH-HHHHHHHcC-C-----CcccCCHHHHh---cCCCCCEEE
Confidence            357899999999999999999886 566665542 22111 112222211 1     01234455544   346799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeC-----CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHH--Hh
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIG-----PNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLAD--EL  220 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g-----~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~--~l  220 (313)
                      .... .......+..+.+.|.+++.     .+.+..      ..+.+++++.|+..-..+. +.......+.+.++  .+
T Consensus        73 i~tp-~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~------~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~i  145 (329)
T 3evn_A           73 VATI-NQDHYKVAKAALLAGKHVLVEKPFTLTYDQA------NELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEI  145 (329)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEEESSCCSSHHHH------HHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTT
T ss_pred             ECCC-cHHHHHHHHHHHHCCCeEEEccCCcCCHHHH------HHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCC
Confidence            6542 12334555555677887753     222222      3455677888876533321 11122344555554  56


Q ss_pred             CCcEEEeecc
Q 021372          221 GFPVMIKATA  230 (313)
Q Consensus       221 g~P~VvKP~~  230 (313)
                      |-+..+.-..
T Consensus       146 G~i~~v~~~~  155 (329)
T 3evn_A          146 GEVISISSTT  155 (329)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEe
Confidence            7666666543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=90.79  E-value=0.24  Score=46.27  Aligned_cols=34  Identities=9%  Similarity=0.023  Sum_probs=30.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC--cEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI--PCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~--~vi~v~~~  103 (313)
                      +.++|+|+|+|+.|+..+..|.+.|+  +|++++..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~   40 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   40 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC
Confidence            45789999999999999999999999  99999754

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=90.78  E-value=0.85  Score=38.66  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=59.5

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      ||.|+|.|.+|..+++.+.+.|++++.+. +.+...      .. .          +.+.+.+++    .++|+|+....
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~-d~~~~~------~~-~----------~~~~~~l~~----~~~DvVv~~~~   59 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAIL-DVRGEH------EK-M----------VRGIDEFLQ----REMDVAVEAAS   59 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEE-CSSCCC------TT-E----------ESSHHHHTT----SCCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEE-ecCcch------hh-h----------cCCHHHHhc----CCCCEEEECCC
Confidence            79999999999999999998999986444 222111      11 1          234555443    57999986532


Q ss_pred             cCcccHHHHHHHHHcCCceeCCCHHHHHHhCCH---HHHHHHHHHCCCC
Q 021372          153 FLAENAVFVEMCREHGINFIGPNPDSIRIMGDK---STARETMKNAGVP  198 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK---~~~~~~l~~~Gip  198 (313)
                      .. ........+.+.|..++...+-.   ..+.   ..+.+.+++.|+.
T Consensus        60 ~~-~~~~~~~~~l~~G~~vv~~~~~~---~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           60 QQ-AVKDYAEKILKAGIDLIVLSTGA---FADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HH-HHHHHHHHHHHTTCEEEESCGGG---GGSHHHHHHHHHHHHHHCCC
T ss_pred             HH-HHHHHHHHHHHCCCcEEEECccc---CChHHHHHHHHHHHHhcCCe
Confidence            11 12233334446788776444322   1122   3566777888876

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.74  E-value=0.37  Score=42.15  Aligned_cols=34  Identities=18%  Similarity=0.228  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999 56689999999999999999987554

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=90.73  E-value=0.18  Score=45.42  Aligned_cols=112  Identities=12%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .++++|+|.|..|..+++.|.+.|+ |++++.++.... ... .+..+..+      +..+.+.+.++ .-.+.|.++..
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-~~~~~i~g------d~~~~~~L~~a-~i~~a~~vi~~  184 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLR-SGANFVHG------DPTRVSDLEKA-NVRGARAVIVD  184 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-TTCEEEES------CTTSHHHHHHT-CSTTEEEEEEC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-CCcEEEEe------CCCCHHHHHhc-ChhhccEEEEc
Confidence            4689999999999999999999999 999976655433 222 22223232      12344444433 23457888865


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVP  198 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip  198 (313)
                      .+....+......+.+.+..     ...+..+.|... .+.++++|+.
T Consensus       185 ~~~d~~n~~~~~~ar~~~~~-----~~iiar~~~~~~-~~~l~~~G~d  226 (336)
T 1lnq_A          185 LESDSETIHCILGIRKIDES-----VRIIAEAERYEN-IEQLRMAGAD  226 (336)
T ss_dssp             CSSHHHHHHHHHHHHTTCTT-----SEEEEECSSGGG-HHHHHHTTCS
T ss_pred             CCccHHHHHHHHHHHHHCCC-----CeEEEEECCHHH-HHHHHHcCCC
Confidence            43222223333444444332     122233444433 3556678865

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=90.71  E-value=0.3  Score=41.92  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=25.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcC--CcEEEEecC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMG--IPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G--~~vi~v~~~  103 (313)
                      |.|++||+| ++.+|..+++.|.+.|  +.|++++.+
T Consensus         1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~   37 (254)
T 3kzv_A            1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARS   37 (254)
T ss_dssp             -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCC
Confidence            568899999 5668999999998885  666666433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=90.67  E-value=1.4  Score=39.13  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=29.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      .+++|.|+|.|.+|..+++.|.+.|+ +|++++.+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            36799999999999999999999999 88888653

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=90.67  E-value=0.88  Score=40.45  Aligned_cols=75  Identities=11%  Similarity=-0.038  Sum_probs=45.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHc--CCcEEEEecCCCc--chhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDK--DALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~--G~~vi~v~~~~~~--~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      |++|||+| +|.+|..+++.|.+.  |++|++++.....  ......+. .....+.     .+..+.+.+.++++  ++
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~~~~~~~--~~   76 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVV-----GDIADAELVDKLAA--KA   76 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEE-----CCTTCHHHHHHHHT--TC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEE-----CCCCCHHHHHHHhh--cC
Confidence            47899999 688999999999998  8999988654321  11111111 1111121     12345566666664  46


Q ss_pred             CEEeeccC
Q 021372          145 TMLHPGYG  152 (313)
Q Consensus       145 d~vip~~g  152 (313)
                      |+|+-.-+
T Consensus        77 d~vih~A~   84 (348)
T 1oc2_A           77 DAIVHYAA   84 (348)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCc
Confidence            98886543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.64  E-value=0.22  Score=44.15  Aligned_cols=36  Identities=8%  Similarity=0.095  Sum_probs=30.8

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++++|.|+|.|.+|..+++.|.+.|++|++++.++
T Consensus         5 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            5 GTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            346799999999999999999999999999986544

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=90.64  E-value=0.45  Score=42.72  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=28.6

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcC-CcEEEEecCCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMG-IPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G-~~vi~v~~~~~  105 (313)
                      .++|||+|+ |.+|..+++.|.+.| ++|++++....
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            468999995 889999999999999 99999875443

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.63  E-value=0.52  Score=40.86  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+..
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   60 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGFTVVINYAG   60 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            57899999 5668999999999999999987543

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=90.58  E-value=0.73  Score=41.28  Aligned_cols=75  Identities=19%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcch---------hhhhhcCc---eEEccCCCCCCCcCCHHHHHH
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDA---------LHVKLADE---SVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~---------~~~~~ad~---~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      |.+||++.|....+...+++|.+.|++|+.|.+.++.+.         +...+|.+   .+ +.+    .++.+ +.+++
T Consensus         1 ~~mrivf~Gtp~fa~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv-~~~----~~~~~-~~~~~   74 (314)
T 3tqq_A            1 MSLKIVFAGTPQFAVPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPI-IQP----FSLRD-EVEQE   74 (314)
T ss_dssp             CCCEEEEEECSGGGHHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCE-ECC----SCSSS-HHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCE-ECc----ccCCC-HHHHH
Confidence            467999999999999999999999999998887665432         11122221   11 111    11222 36778


Q ss_pred             HHHhcCCCEEeec
Q 021372          138 AAISRGCTMLHPG  150 (313)
Q Consensus       138 ~~~~~~id~vip~  150 (313)
                      .+++.++|+++..
T Consensus        75 ~l~~~~~Dliv~~   87 (314)
T 3tqq_A           75 KLIAMNADVMVVV   87 (314)
T ss_dssp             HHHTTCCSEEEEE
T ss_pred             HHHhcCCCEEEEc
Confidence            8889999988764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=90.58  E-value=0.68  Score=41.69  Aligned_cols=75  Identities=9%  Similarity=0.069  Sum_probs=49.8

Q ss_pred             cEEEEE-cCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVA-NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIi-g~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ++|||. |+|.+|+.+++.++.+|.+|++++.+.........+ ++..+..    ..+  ...+.+.++....++|+++-
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~----~~~--~~~~~v~~~~~~~g~D~vid  239 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNE----KAP--DFEATLREVMKAEQPRIFLD  239 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEET----TST--THHHHHHHHHHHHCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEC----CcH--HHHHHHHHHhcCCCCcEEEE
Confidence            577777 688899999999999999999987655444333333 3433321    112  23556666666678999996


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus       240 ~~g  242 (349)
T 3pi7_A          240 AVT  242 (349)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.56  E-value=0.3  Score=43.92  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      .++|+|+|+|..|+.++..|++.|+ +|++++...
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            4689999999999999999999999 999997543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=90.56  E-value=0.29  Score=44.54  Aligned_cols=34  Identities=12%  Similarity=0.013  Sum_probs=30.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|..|+.++..|++.|++|++++..+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4689999999999999999999999999997544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=90.50  E-value=0.27  Score=46.66  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=29.7

Q ss_pred             CcccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           65 LKVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        65 ~~~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ....+|..+|+|+|+|+.|+..+..|.++|++|.+++..
T Consensus        19 ~~~~m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~   57 (491)
T 3urh_A           19 YFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR   57 (491)
T ss_dssp             -------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             chhhcccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            334445578999999999999999999999999999753

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=90.50  E-value=0.27  Score=46.86  Aligned_cols=38  Identities=11%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             ccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           67 VTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        67 ~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+++...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   44 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV   44 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34456789999999999999999999999999997654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=90.49  E-value=0.28  Score=41.50  Aligned_cols=33  Identities=9%  Similarity=0.076  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ...|+|+|+|..|+..+..|.++|.+|++++..
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~   35 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQS   35 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            457999999999999999999999999999754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.48  E-value=0.19  Score=44.22  Aligned_cols=35  Identities=9%  Similarity=0.083  Sum_probs=28.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCC---cEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGI---PCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~---~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|..+++.|.+.|.   .|++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~   70 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL   70 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH
Confidence            357899999 56689999999999887   888876443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=90.44  E-value=0.48  Score=43.15  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|+..++.++.+|. +|++++.++........+ ++..+  +.  ...+....+.+.++.. .++|+|+
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi--~~--~~~~~~~~~~i~~~t~-gg~Dvvi  266 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECL--NP--KDYDKPIYEVICEKTN-GGVDYAV  266 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEE--CG--GGCSSCHHHHHHHHTT-SCBSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEE--ec--ccccchHHHHHHHHhC-CCCCEEE
Confidence            5789999999999999999999999 688876555444333333 34333  21  1100111334444333 3799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       267 d~~g  270 (373)
T 1p0f_A          267 ECAG  270 (373)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            6543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.41  E-value=0.46  Score=43.34  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|+|+|+|..|+.+++.|+.+|.+|++++.++.
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            48999999999999999999999999888865543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.30  E-value=0.9  Score=40.68  Aligned_cols=33  Identities=15%  Similarity=0.155  Sum_probs=29.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      .+++||+|+|..|+.++.+|.+.|. +|++++.+
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            5789999999999999999999999 67777654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=90.27  E-value=0.27  Score=45.15  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=30.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..+|+|+|+|..|..++..|.+.|++|++++...
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            4689999999999999999999999999997553

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=90.22  E-value=0.68  Score=40.23  Aligned_cols=71  Identities=14%  Similarity=0.099  Sum_probs=44.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCce-EEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADES-VCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~-~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|.+|++.+.+...     ...... +..|    ..+...++.+.+.+.+.  ++|.
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~-----~~~~~~~~~~D----v~~~~~v~~~~~~~~~~~G~iDi   81 (261)
T 4h15_A           11 GKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE-----GLPEELFVEAD----LTTKEGCAIVAEATRQRLGGVDV   81 (261)
T ss_dssp             TCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT-----TSCTTTEEECC----TTSHHHHHHHHHHHHHHTSSCSE
T ss_pred             CCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh-----CCCcEEEEEcC----CCCHHHHHHHHHHHHHHcCCCCE
Confidence            48899999 5558999999999999999998754321     112222 2221    12223455555555442  5998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        82 lVnn   85 (261)
T 4h15_A           82 IVHM   85 (261)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8853

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=90.22  E-value=0.26  Score=46.19  Aligned_cols=36  Identities=6%  Similarity=-0.008  Sum_probs=30.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~  105 (313)
                      |.++|+|+|+|..|+..+..|+++  |++|++++..+.
T Consensus         1 M~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   38 (452)
T 3oc4_A            1 MSLKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT   38 (452)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            347899999999999999999998  999999976543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=90.19  E-value=0.44  Score=43.15  Aligned_cols=75  Identities=15%  Similarity=0.179  Sum_probs=47.4

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||+|+ |.+|..+++.++.+|.+|++++.++........+ ++..+..    ...  ...+.+.+.....++|+++
T Consensus       171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~----~~~--~~~~~~~~~~~~~~~D~vi  244 (351)
T 1yb5_A          171 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNH----REV--NYIDKIKKYVGEKGIDIII  244 (351)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEET----TST--THHHHHHHHHCTTCEEEEE
T ss_pred             cCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeC----CCc--hHHHHHHHHcCCCCcEEEE
Confidence            578999996 9999999999999999998886554333322222 2333221    111  2244555544344799998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       245 ~~~  247 (351)
T 1yb5_A          245 EML  247 (351)
T ss_dssp             ESC
T ss_pred             ECC
Confidence            544

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=90.18  E-value=0.34  Score=43.79  Aligned_cols=34  Identities=15%  Similarity=0.045  Sum_probs=30.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +...|+|+|+|..|..++..|.+.|++|++++..
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~   49 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG   49 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            3578999999999999999999999999999754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=90.18  E-value=0.27  Score=46.97  Aligned_cols=35  Identities=9%  Similarity=0.005  Sum_probs=31.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +..+|+|+|+|..|+.++..|.+.|++|++++...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            34689999999999999999999999999997553

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=90.18  E-value=1.3  Score=37.98  Aligned_cols=30  Identities=40%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV  100 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v  100 (313)
                      |.||+|+|.|.+|..+++++.+.+.+++.+
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~   32 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGHEIVGV   32 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCCEEEEE
Confidence            578999999999999999999987765543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.16  E-value=0.68  Score=42.11  Aligned_cols=77  Identities=17%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|...++.++.+|. +|++++.++........+ ++..+  +.  ...+....+.+.++.. .++|+++
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi--~~--~~~~~~~~~~~~~~~~-~g~D~vi  267 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFV--NP--NDHSEPISQVLSKMTN-GGVDFSL  267 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEE--CG--GGCSSCHHHHHHHHHT-SCBSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEE--ec--cccchhHHHHHHHHhC-CCCCEEE
Confidence            5789999999999999999999999 688876555444333333 34333  21  1100111334444433 3799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       268 d~~g  271 (374)
T 1cdo_A          268 ECVG  271 (374)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            6543

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=90.14  E-value=0.93  Score=40.14  Aligned_cols=33  Identities=9%  Similarity=0.018  Sum_probs=28.4

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHc-CCcEEEEecCC
Q 021372           72 EKILVANR-GEIAVRVIRTAHEM-GIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~-G~~vi~v~~~~  104 (313)
                      ++|||+|+ |.+|..+++.|.+. |++|++++...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~   35 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            47999995 88999999999998 89999987544

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=90.11  E-value=0.36  Score=46.02  Aligned_cols=37  Identities=8%  Similarity=0.115  Sum_probs=31.9

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +.+...|+|+|+|+.|+.++..|.+.|++|++++..+
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~   45 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP   45 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4456789999999999999999999999999997654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.11  E-value=0.33  Score=40.76  Aligned_cols=33  Identities=15%  Similarity=0.150  Sum_probs=29.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +++|+|+|.|.+|..+++.+.+.|++|++++.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            568999999999999999999999999988644

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=90.08  E-value=1.1  Score=40.61  Aligned_cols=138  Identities=11%  Similarity=-0.023  Sum_probs=76.8

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.||.|+|.|.+|.. .++.+++. +++++.+.+ .+.......+.....          |.+.+.++   ...++|+|+
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~~~~~~~----------~~~~~~ll---~~~~vD~V~   70 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVE-RSKELSKERYPQASI----------VRSFKELT---EDPEIDLIV   70 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEEC-SSCCGGGTTCTTSEE----------ESCSHHHH---TCTTCCEEE
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEc-CCHHHHHHhCCCCce----------ECCHHHHh---cCCCCCEEE
Confidence            578999999999986 77888776 788876653 332221111111111          33444444   346799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeC-----CCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcc-cCCCHHHHHHHHHH--h
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIG-----PNPDSIRIMGDKSTARETMKNAGVPTVPGSDG-LLQSTEEAVKLADE--L  220 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g-----~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~-~~~~~~~~~~~~~~--l  220 (313)
                      .... .......+..+.+.|.+++.     .+.+..      ..+.+++++.|+..--.+.. .......+.+.+++  +
T Consensus        71 i~tp-~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea------~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~i  143 (362)
T 3fhl_A           71 VNTP-DNTHYEYAGMALEAGKNVVVEKPFTSTTKQG------EELIALAKKKGLMLSVYQNRRWDADFLTVRDILAKSLL  143 (362)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEEESSCCSSHHHH------HHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTTT
T ss_pred             EeCC-hHHHHHHHHHHHHCCCeEEEecCCCCCHHHH------HHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHcCCC
Confidence            7642 22334555556678887753     222222      34566777888765433211 11223445555543  6


Q ss_pred             CCcEEEeec
Q 021372          221 GFPVMIKAT  229 (313)
Q Consensus       221 g~P~VvKP~  229 (313)
                      |-+..+...
T Consensus       144 G~i~~v~~~  152 (362)
T 3fhl_A          144 GRLVEYEST  152 (362)
T ss_dssp             SSEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            766666554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.08  E-value=0.3  Score=42.99  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +++|+|+|.|.+|..++..|.+.|++|++++.++
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999986543

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=90.04  E-value=0.28  Score=45.12  Aligned_cols=34  Identities=15%  Similarity=0.007  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHE---MGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~~~  104 (313)
                      |++|+|+|+|..|+..+..|++   .|++|++++...
T Consensus         1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            4689999999999999999999   899999997554

>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*

Probab=90.01  E-value=1.4  Score=42.06  Aligned_cols=88  Identities=11%  Similarity=0.072  Sum_probs=59.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh----cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL----ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~----ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .||+.|.|.+.....+++.|.++|.+|+.+.+..........+    .+..+.++       -.+...+.+.+++.++|+
T Consensus       348 GKrv~i~g~~~~~~~la~~L~ElGm~vv~~gt~~~~~~d~~~l~~~~~~~~~i~~-------~~d~~el~~~i~~~~pDL  420 (492)
T 3u7q_A          348 GKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYD-------DVTGYEFEEFVKRIKPDL  420 (492)
T ss_dssp             TCEEEECBSSSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHHHHTTSCTTCEEEE-------SCBHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHCCCEEEEEeCCCCCHHHHHHHHHhCCCCcEEEc-------CCCHHHHHHHHHhcCCcE
Confidence            5789999988889999999999999999876543222111111    12222222       135778889999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.       ......++.|||+.
T Consensus       421 ~ig~~-------~~~~ia~k~gIP~~  439 (492)
T 3u7q_A          421 IGSGI-------KEKFIFQKMGIPFR  439 (492)
T ss_dssp             EEECH-------HHHHHHHHTTCCEE
T ss_pred             EEeCc-------chhHHHHHcCCCEE
Confidence            99542       23345568899886

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.01  E-value=0.28  Score=40.38  Aligned_cols=36  Identities=11%  Similarity=0.102  Sum_probs=30.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCC--cEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGI--PCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~--~vi~v~~~~~  105 (313)
                      |.++|||+| +|.+|..+++.|.+.|+  +|++++.++.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~   42 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL   42 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc
Confidence            567899999 67899999999999998  8888765443

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=89.97  E-value=0.38  Score=43.80  Aligned_cols=88  Identities=13%  Similarity=0.100  Sum_probs=53.2

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ...+|||+|+|.+|..+++.++.+|.+|++++.+........ .+ ++..+  +       +.+.+.+.++.  .++|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~--~-------~~~~~~~~~~~--~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFL--V-------SRDQEQMQAAA--GTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEE--E-------TTCHHHHHHTT--TCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEE--e-------ccCHHHHHHhh--CCCCEE
Confidence            357899999999999999999999999988875554433222 22 33333  2       12233444332  378999


Q ss_pred             eeccCcCcccHHHHHHHHHcC
Q 021372          148 HPGYGFLAENAVFVEMCREHG  168 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~g  168 (313)
                      +-..+.........+.+...|
T Consensus       256 id~~g~~~~~~~~~~~l~~~G  276 (366)
T 1yqd_A          256 IDTVSAVHPLLPLFGLLKSHG  276 (366)
T ss_dssp             EECCSSCCCSHHHHHHEEEEE
T ss_pred             EECCCcHHHHHHHHHHHhcCC
Confidence            876543222233334443334

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=89.88  E-value=0.29  Score=47.49  Aligned_cols=38  Identities=13%  Similarity=-0.020  Sum_probs=32.4

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTID  105 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~  105 (313)
                      .+++++|+|+|+|..|+..+..|+++  |++|++++..+.
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            34578999999999999999999998  999999976543

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=89.86  E-value=0.7  Score=39.18  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=28.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHH-cCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHE-MGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~-~G~~vi~v~~~~  104 (313)
                      ++++||+| ++.+|+.+++.|.+ .|+.|++++.+.
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~   39 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQ   39 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSC
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccc
Confidence            67899999 56689999999988 788888876543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=89.83  E-value=1.3  Score=39.69  Aligned_cols=128  Identities=10%  Similarity=0.054  Sum_probs=72.3

Q ss_pred             ccEEEEEcCCHhHH-HHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh-cCCCEE
Q 021372           71 QEKILVANRGEIAV-RVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS-RGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~-~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~~id~v  147 (313)
                      +.||.|+|.|.++. ..++++++. +++++.+. +.+...    . .-.          .|.+.+++++   . .++|+|
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~-d~~~~~----~-g~~----------~~~~~~~ll~---~~~~vD~V   85 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATA-SRHGTV----E-GVN----------SYTTIEAMLD---AEPSIDAV   85 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEE-CSSCCC----T-TSE----------EESSHHHHHH---HCTTCCEE
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEE-eCChhh----c-CCC----------ccCCHHHHHh---CCCCCCEE
Confidence            46999999999998 688999886 77877765 333211    0 101          1345555554   4 579999


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHHH
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLADE  219 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~~  219 (313)
                      +.... .......+..+.+.|.+++.--+-+. ...+=..+.+++++.|+..-..+. +.......+.+.+++
T Consensus        86 ~i~tp-~~~H~~~~~~al~aGkhVl~EKP~a~-~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~  156 (330)
T 4ew6_A           86 SLCMP-PQYRYEAAYKALVAGKHVFLEKPPGA-TLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLAS  156 (330)
T ss_dssp             EECSC-HHHHHHHHHHHHHTTCEEEECSSSCS-SHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHHS
T ss_pred             EEeCC-cHHHHHHHHHHHHcCCcEEEeCCCCC-CHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHhc
Confidence            86542 11234555555678988763211110 111123455677788876543321 233445556666553

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=89.82  E-value=0.54  Score=42.68  Aligned_cols=145  Identities=11%  Similarity=-0.002  Sum_probs=76.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--------CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--------GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--------G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      -||.|+|.|.+|..-+++++++        +.+++.+.+ ++... ...++.++= ++     .-|.+.++++   .+.+
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d-~~~~~-a~~~a~~~g-~~-----~~y~d~~ell---~~~~   94 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAE-ANAGL-AEARAGEFG-FE-----KATADWRALI---ADPE   94 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEEC-C--TT-HHHHHHHHT-CS-----EEESCHHHHH---HCTT
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEEC-CCHHH-HHHHHHHhC-CC-----eecCCHHHHh---cCCC
Confidence            4899999999998777776553        567777653 22211 112222110 10     0134455544   4567


Q ss_pred             CCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCcccC-CCHHHHHHHHH--Hh
Q 021372          144 CTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSDGLL-QSTEEAVKLAD--EL  220 (313)
Q Consensus       144 id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~~~~-~~~~~~~~~~~--~l  220 (313)
                      +|+|+.... .......+..+.+.|..++.-=|-+ ....+=..+.+.+++.|+..--.+.... .....+.+..+  .+
T Consensus        95 iDaV~IatP-~~~H~~~a~~al~aGkhVl~EKPla-~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G~i  172 (393)
T 4fb5_A           95 VDVVSVTTP-NQFHAEMAIAALEAGKHVWCEKPMA-PAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDGVI  172 (393)
T ss_dssp             CCEEEECSC-GGGHHHHHHHHHHTTCEEEECSCSC-SSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTTTT
T ss_pred             CcEEEECCC-hHHHHHHHHHHHhcCCeEEEccCCc-ccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcCCC
Confidence            999987542 2233455555567898776311111 1122233456777888877654432122 12334555554  46


Q ss_pred             CCcEEEeec
Q 021372          221 GFPVMIKAT  229 (313)
Q Consensus       221 g~P~VvKP~  229 (313)
                      |-+..+.-.
T Consensus       173 G~i~~v~~~  181 (393)
T 4fb5_A          173 GRVNHVRVE  181 (393)
T ss_dssp             CSEEEEEEE
T ss_pred             ccccceeee
Confidence            766666643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=89.77  E-value=0.71  Score=40.00  Aligned_cols=78  Identities=12%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----hhcCceEEccCCCCCCCcCCHHHHHHHHHhc--C
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISR--G  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~  143 (313)
                      .|++||+| ++.+|+.+++.|.+.|.+|++++.+.+......    ..-.+.+.+.  -+..+..+++.+.+.+.++  +
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~--~Dvt~~~~v~~~~~~~~~~~G~   84 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVK--ADVSKKKDVEEFVRRTFETYSR   84 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE--ccCCCHHHHHHHHHHHHHHcCC
Confidence            68899999 455899999999999999999875543221111    1112233222  1222334455555555432  6


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|.++-.
T Consensus        85 iDiLVNN   91 (254)
T 4fn4_A           85 IDVLCNN   91 (254)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            9988864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.77  E-value=0.51  Score=43.35  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..++|+|+|.|.+|..+++.++..|.+|++++.++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            368999999999999999999999999988865543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=89.77  E-value=0.37  Score=43.60  Aligned_cols=35  Identities=11%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |...|+|+|+|..|..++..|.+.|++|++++...
T Consensus         2 ~~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            35689999999999999999999999999997543

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=89.75  E-value=0.42  Score=42.18  Aligned_cols=33  Identities=3%  Similarity=0.077  Sum_probs=30.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|+|+|+|+.|+..+..|++.|++|++++..
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            568999999999999999999999999999765

>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}

Probab=89.71  E-value=1  Score=42.89  Aligned_cols=88  Identities=14%  Similarity=0.175  Sum_probs=57.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----hhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .||++|.+.+.....+++.|.++|.+|+.+.+.........    .+.+..+.++       -.+...+.+.+++.++|+
T Consensus       332 GKrv~i~~~~~~~~~l~~~L~ElGmevv~~gt~~~~~~d~~~~~~~l~~~~~i~~-------d~d~~el~~~i~~~~pDL  404 (483)
T 3pdi_A          332 GKRVLLYTGGVKSWSVVSALQDLGMKVVATGTKKSTEEDKARIRELMGDDVKMLD-------EGNARVLLKTVDEYQADI  404 (483)
T ss_dssp             TCEEEEECSSSCHHHHHHHHHHHTCEEEEECBSSSCHHHHHHHHHHSCSSCCBCC-------SCSHHHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHCCCEEEEEecCCCCHHHHHHHHHhcCCCCEEEe-------CCCHHHHHHHHHhcCCCE
Confidence            57899999888889999999999999988754422211111    1112222121       135778899999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.    ..   ....++.|+|++
T Consensus       405 ~ig~~----~~---~~~a~k~gIP~~  423 (483)
T 3pdi_A          405 LIAGG----RN---MYTALKGRVPFL  423 (483)
T ss_dssp             EECCG----GG---HHHHHHTTCCBC
T ss_pred             EEECC----ch---hHHHHHcCCCEE
Confidence            99542    11   123456888875

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=89.70  E-value=1.1  Score=40.25  Aligned_cols=145  Identities=12%  Similarity=0.080  Sum_probs=74.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +.||.|+|.|.+|...++++.+. +++++.+. +.+.... ..++...   +    ...+.+.+.+   +.+.++|+|+.
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~-d~~~~~~-~~~a~~~---g----~~~~~~~~~~---l~~~~~D~V~i   71 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIA-DPFIEGA-QRLAEAN---G----AEAVASPDEV---FARDDIDGIVI   71 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEE-CSSHHHH-HHHHHTT---T----CEEESSHHHH---TTCSCCCEEEE
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEE-CCCHHHH-HHHHHHc---C----CceeCCHHHH---hcCCCCCEEEE
Confidence            46899999999999999999986 77877554 3332211 1122110   0    0013344444   34567999987


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCCCc-ccCCCHHHHHHHHHH--hCCcEEE
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPGSD-GLLQSTEEAVKLADE--LGFPVMI  226 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~~~-~~~~~~~~~~~~~~~--lg~P~Vv  226 (313)
                      ... .......+..+.+.|.+++.--+-+. ...+=..+.+.+++.|+..-..+. +.......+.+.+++  +|-+..+
T Consensus        72 ~tp-~~~h~~~~~~al~~gk~v~~EKP~~~-~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i~~v  149 (344)
T 3euw_A           72 GSP-TSTHVDLITRAVERGIPALCEKPIDL-DIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGNLEQL  149 (344)
T ss_dssp             CSC-GGGHHHHHHHHHHTTCCEEECSCSCS-CHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSSEEEE
T ss_pred             eCC-chhhHHHHHHHHHcCCcEEEECCCCC-CHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCceEEE
Confidence            542 12234455555577877653211110 011112345566677764433221 111223344455543  6666655


Q ss_pred             eec
Q 021372          227 KAT  229 (313)
Q Consensus       227 KP~  229 (313)
                      .-.
T Consensus       150 ~~~  152 (344)
T 3euw_A          150 VII  152 (344)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=89.70  E-value=0.44  Score=43.11  Aligned_cols=78  Identities=18%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|+..++.++.+|. +|++++.++........+ ++..+..  .. .+.....+.+.+... .++|+|+
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~--~~-~~~~~~~~~i~~~~~-~g~D~vi  247 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI--SK-ESPQEIARKVEGQLG-CKPEVTI  247 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC--SS-CCHHHHHHHHHHHHT-SCCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcC--cc-cccchHHHHHHHHhC-CCCCEEE
Confidence            5789999999999999999999999 788886554433332333 3433321  10 000111233333332 5799999


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       248 d~~g  251 (356)
T 1pl8_A          248 ECTG  251 (356)
T ss_dssp             ECSC
T ss_pred             ECCC
Confidence            6543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.69  E-value=0.38  Score=42.57  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +|+++|.|+| .|.+|..+++.+.+.|++|++++.++
T Consensus        19 ~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           19 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3567899999 99999999999999999999986544

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=89.68  E-value=0.3  Score=43.96  Aligned_cols=35  Identities=9%  Similarity=0.187  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |...|+|+|+|..|..++..|.+.|++|++++...
T Consensus         1 m~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            1 MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             -CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35689999999999999999999999999997543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=89.67  E-value=0.29  Score=43.30  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=29.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|+|+|+|+.|+.++..|.+.|++|++++.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            46899999999999999999999999999975

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.66  E-value=0.9  Score=42.15  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=32.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      ..+|+|+|.|.+|..+++.|+.+|.+|++++.++..
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~  225 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAA  225 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            578999999999999999999999999998766654

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=89.61  E-value=1  Score=39.43  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=25.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHc-CCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEM-GIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~-G~~vi~v~  101 (313)
                      |.||+|+| .|.+|..+++.+.+. +++++.+.
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~   39 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGAL   39 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEB
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            57899999 899999999998775 77777654

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=89.61  E-value=0.29  Score=45.80  Aligned_cols=35  Identities=14%  Similarity=0.033  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCC--cEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGI--PCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~--~vi~v~~~~  104 (313)
                      |+++|+|||+|..|+..+..|++.|+  +|+++....
T Consensus         1 m~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             -CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             CCceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            46789999999999999999999999  999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1ulza2	114	c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term	2e-42
d1w96a2	170	c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N s	1e-39
d2j9ga2	114	c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-term	2e-39
d1ulza3	214	d.142.1.2 (A:115-328) Biotin carboxylase (BC), dom	3e-35
d2j9ga3	216	d.142.1.2 (A:115-330) Biotin carboxylase (BC), dom	2e-30
d2r7ka2	238	d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carbo	2e-28
d1a9xa5	275	d.142.1.2 (A:128-402) Carbamoyl phosphate syntheta	1e-26
d1a9xa6	259	d.142.1.2 (A:677-935) Carbamoyl phosphate syntheta	1e-22
d2r85a2	235	d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carbo	9e-21
d1uc8a2	192	d.142.1.7 (A:89-280) Lysine biosynthesis enzyme Ly	5e-17
d1w96a3	267	d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M	2e-14
d1gsoa3	224	d.142.1.2 (A:104-327) Glycinamide ribonucleotide s	2e-11
d1kjqa3	206	d.142.1.2 (A:113-318) Glycinamide ribonucleotide t	8e-11
d1i7na2	206	d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus nor	1e-10
d1iowa2	210	d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain	6e-10
d3etja3	198	d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribo	1e-09
d1ehia2	228	d.142.1.1 (A:135-362) D-alanine:D-lactate ligase V	4e-09
d1vkza3	220	d.142.1.2 (A:94-313) Glycinamide ribonucleotide sy	7e-07
d1e4ea2	211	d.142.1.1 (A:132-342) D-alanine:D-lactate ligase V	8e-07
d1eucb2	246	d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-	3e-05
d2nu7b2	238	d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-	2e-04

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 114

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score =  140 bits (354), Expect = 2e-42
 Identities = 61/113 (53%), Positives = 78/113 (69%), Gaps = 1/113 (0%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
            K+LVANRGEIAVR+IR   E+GIP VA+Y+ ++  A HVKLADE+  IG  P   +YL 
Sbjct: 3   NKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDP-LDTYLN 61

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD 184
              +++ A+  G   +HPGYGFLAENA F +MC E GI FIGP+   I +MGD
Sbjct: 62  KQRIINLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD 114

>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Acetyl-CoA carboxylase, BC-N subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIP-----------CVAVYSTIDKDALHVKLADESVCI 120
            KIL+AN G  AV+ IR+  +                +A    ++ +A ++++AD+ + +
Sbjct: 47  SKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEV 106

Query: 121 GEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCRE--HGINFIGPNPDS 178
               ++ +Y  +  ++  A       +  G+G  +EN +  E   +    + FIGP  ++
Sbjct: 107 PGGTNNNNYANVDLIVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNA 166

Query: 179 IRIM 182
           +R +
Sbjct: 167 MRSL 170

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 114

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (333), Expect = 2e-39
 Identities = 63/112 (56%), Positives = 82/112 (73%)

Query: 72  EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLL 131
           +KI++ANRGEIA+R++R   E+GI  VAV+S+ D+D  HV LADE+VCIG APS +SYL 
Sbjct: 3   DKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLN 62

Query: 132 IPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG 183
           IP ++SAA   G   +HPGYGFL+ENA F E     G  FIGP  ++IR+MG
Sbjct: 63  IPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMG 114

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]} Length = 214

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

 Score =  124 bits (313), Expect = 3e-35
 Identities = 71/126 (56%), Positives = 93/126 (73%)

Query: 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD 244
           K+ ++E MK AGVP VPGSDG+L+S EEA  LA E+G+PV++KATAGGGGRG+R+ +  +
Sbjct: 1   KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEE 60

Query: 245 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIE 304
           E VK  +QA  EA  AFG   + LEK+++NP+HIE+QVL DK+GNV+H GERDCSIQ   
Sbjct: 61  ELVKNYEQASREAEKAFGRGDLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRN 120

Query: 305 IHTHTE 310
                 
Sbjct: 121 QKLVEI 126

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 62/122 (50%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQST-EEAVKLADELGFPVMIKATAGGGGRGMRLAKE 242
           DK +A   MK AGVP VPGSDG L    ++   +A  +G+PV+IKA+ GGGGRGMR+ + 
Sbjct: 1   DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRG 60

Query: 243 PDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQV 302
             E  + +   ++EA AAF ND VY+EKY++NPRH+E QVLAD  GN ++  ERDCS+Q 
Sbjct: 61  DAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQR 120

Query: 303 IE 304
             
Sbjct: 121 RH 122

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

 Score =  107 bits (268), Expect = 2e-28
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 24/140 (17%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           ++S   + ++ AG+              +  +  +++   V++K     GGRG  +A   
Sbjct: 1   ERSLEGKLLREAGLRVP-----------KKYESPEDIDGTVIVKFPGARGGRGYFIASST 49

Query: 244 DEFVKLLQQAKSEAAAAF-GNDGVYLEKYVQNPR------------HIEFQVLADKYGNV 290
           +EF K  +  K             ++E+YV                 +E   +  +Y + 
Sbjct: 50  EEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESN 109

Query: 291 VHFGERDCSIQVIEIHTHTE 310
           +    R  +   +E++ +  
Sbjct: 110 IDGLVRIPAKDQLEMNINPS 129

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 275

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (259), Expect = 1e-26
 Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           D+      MK  G+ T     G+  + EEA+ +A ++GFP +I+ +   GG G  +A   
Sbjct: 1   DRRRFDVAMKKIGLETARS--GIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 58

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN--VVHFGERDCSIQ 301
           +E     ++  +          + +++ +   +  E +V+ DK  N  +V   E   ++ 
Sbjct: 59  EE----FEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 114

Query: 302 VIEIHTHTE 310
           +    + T 
Sbjct: 115 IHTGDSITV 123

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]} Length = 259

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

 Score = 92.8 bits (230), Expect = 1e-22
 Identities = 22/123 (17%), Positives = 54/123 (43%), Gaps = 8/123 (6%)

Query: 189 RETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248
           +  ++   +         + + E AV+ A E+G+P++++A+   GGR M +  +  +   
Sbjct: 3   QHAVERLKLKQPAN--ATVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEAD--- 57

Query: 249 LLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308
            L++    A +   +  V L+ ++ +   ++   + D  G +V  G     I+   +H+ 
Sbjct: 58  -LRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICD--GEMVLIGGIMEHIEQAGVHSG 114

Query: 309 TEI 311
              
Sbjct: 115 DSA 117

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]} Length = 235

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 86.9 bits (214), Expect = 9e-21
 Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 24/139 (17%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           D++  R+ +K AG+              E  +  D++  PV++K     GG+G  LAK+P
Sbjct: 1   DRNLERKWLKKAGIRVP-----------EVYEDPDDIEKPVIVKPHGAKGGKGYFLAKDP 49

Query: 244 DEFVKLLQQA---------KSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGN---VV 291
           ++F +  ++          K+     +         Y  +    E ++++        V 
Sbjct: 50  EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVD 109

Query: 292 HFGERDCSIQVIEIHTHTE 310
             G      Q +E      
Sbjct: 110 AIGRIPAKDQ-LEFDMDIT 127

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]} Length = 192

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

 Score = 75.8 bits (185), Expect = 5e-17
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD 244
           K      +  AG+P       L    EEA++L +  G+PV++K   G  GR +  A    
Sbjct: 1   KWATSVALAKAGLPQPKT--ALATDREEALRLMEAFGYPVVLKPVIGSWGRLL--AXXXX 56

Query: 245 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNP-RHIEFQVLADKYGNVVHFGERDCSIQVI 303
                      E    F +   Y+++YV+ P R I   V+ ++    ++           
Sbjct: 57  XXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHWITNTA 116

Query: 304 EIHTH 308
                
Sbjct: 117 RGGQA 121

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 267

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 2e-14
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 28/150 (18%)

Query: 183 GDKSTARETMKNAGVPTVPGSD------------------------GLLQSTEEAVKLAD 218
           GDK ++    ++A VP +P S                         G   S E+ ++ A 
Sbjct: 1   GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAK 60

Query: 219 ELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHI 278
            +GFPVMIKA+ GGGG+G+R  +  ++F+ L  QA +E         +++ K     RH+
Sbjct: 61  RIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANE----IPGSPIFIMKLAGRARHL 116

Query: 279 EFQVLADKYGNVVHFGERDCSIQVIEIHTH 308
           E Q+LAD+YG  +    RDCS+Q       
Sbjct: 117 EVQLLADQYGTNISLFGRDCSVQRRHQKII 146

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (146), Expect = 2e-11
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD 244
           K+  ++ +    +PT           E A+    E G P++IKA     G+G+ +A   +
Sbjct: 2   KAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLE 59

Query: 245 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADK-----YGNVVHFGERDCS 299
           E    +    +  A       + +E+++         ++  +       +  H    D  
Sbjct: 60  EAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRVGDKD 119

Query: 300 IQVIEIHT 307
                   
Sbjct: 120 TGPNTGGM 127

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (140), Expect = 8e-11
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 189 RETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVK 248
           R   +   +PT         S     +   ++G+P ++K      G+G    +  ++  +
Sbjct: 7   RLAAEELQLPTSTY--RFADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQ 64

Query: 249 LLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTH 308
             +   ++     G   V +E  V+    I    ++   G                  + 
Sbjct: 65  AWKY--AQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQEDGDYRESW 122

Query: 309 TE 310
             
Sbjct: 123 QP 124

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 206

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 19/143 (13%), Positives = 36/143 (25%), Gaps = 12/143 (8%)

Query: 175 NPDSIRIMGDKSTAR----ETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATA 230
           + +SI    DK           K  G    P  +          ++     FPV++K   
Sbjct: 2   SLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQ--TYYPNHREMLTLPTFPVVVKIGH 59

Query: 231 GGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNV 290
              G G    +   +F  +                   E ++     I  Q + + Y   
Sbjct: 60  AHSGMGKVKVENHYDFQDIASVVALT------QTYATAEPFIDAKYDIRVQKIGNNYKAY 113

Query: 291 VHFGERDCSIQVIEIHTHTEIKL 313
           +                  +I +
Sbjct: 114 MRTSISGNWKTNTGSAMLEQIAM 136

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

 Score = 55.9 bits (133), Expect = 6e-10
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 12/129 (9%)

Query: 185 KSTARETMKNAGVPTVPG-----SDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRL 239
           K  ++   + AG+P  P      ++     +++ +     LG PV++K +  G   GM  
Sbjct: 1   KLRSKLLWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSK 60

Query: 240 AKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS 299
               +     L+        AF +D   L +   +       +L ++    +        
Sbjct: 61  VVAENALQDALRL-------AFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTF 113

Query: 300 IQVIEIHTH 308
                    
Sbjct: 114 YDYEAKFLS 122

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]} Length = 198

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 11/125 (8%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEP 243
           D+ T ++      +PT P    LL    E   + D LG   ++K   GG     +     
Sbjct: 1   DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRA 58

Query: 244 DEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVI 303
           +E          E   A       +E+ +     +         G+ V +       Q  
Sbjct: 59  NET---------EQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDG 109

Query: 304 EIHTH 308
            + T 
Sbjct: 110 ILRTS 114

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]} Length = 228

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

 Score = 53.9 bits (128), Expect = 4e-09
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 8/125 (6%)

Query: 184 DKSTARETMKNAGVPTVPGS--DGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAK 241
           DK+  +E +   G+        D    +     K+  ELG  V +KA   G   G+    
Sbjct: 1   DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVT 60

Query: 242 EPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQ 301
             +E+ + L  +         +  V +E+ V   R +E  V+ +    V   G      Q
Sbjct: 61  NAEEYTEALSDSFQY------DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTVPNQ 114

Query: 302 VIEIH 306
                
Sbjct: 115 GSGDG 119

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]} Length = 220

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPD 244
           K  A+  MK  G+ T      + ++ EE  +   +   P +IKA     G+G+ +    +
Sbjct: 2   KVYAKRFMKKYGIRTARF--EVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKE 59

Query: 245 EFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIE 304
           E ++   +             V +++++         V+  +   ++ F      +   +
Sbjct: 60  ETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGD 119

Query: 305 IHTHT 309
              +T
Sbjct: 120 RGPNT 124

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]} Length = 211

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR 238
           DKS      KNAG+ T      ++   +  V  A    +PV +K    G   G++
Sbjct: 1   DKSLTYIVAKNAGIATPAF--WVINKDDRPV--AATFTYPVFVKPARSGSSFGVK 51

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFP-VMIKATAGGGGRGMRLAKEPD-E 245
           +++ M + GV        +  +  EA++ A  L    +++KA    GGRG  +       
Sbjct: 9   SKKLMSDNGVKVQRF--FVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKG 66

Query: 246 FVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQV 282
            V L +  +     A    G  L         ++   
Sbjct: 67  GVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNK 103

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 188 ARETMKNAGVPTVPGSDGLLQSTEEAVKLADELG-FPVMIKA----TAGGGGRGMRLAKE 242
           A++     G+P   G      +  EA + A ++G  P ++K        G   G+++   
Sbjct: 8   AKQLFARYGLPAPVG--YACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNS 65

Query: 243 PDEFVKLLQQ 252
            ++     + 
Sbjct: 66  KEDIRAFAEN 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d2j9ga2	114	Biotin carboxylase (BC), N-terminal domain {Escher	99.86
d1ulza2	114	Biotin carboxylase (BC), N-terminal domain {Aquife	99.86
d1a9xa5	275	Carbamoyl phosphate synthetase (CPS), large subuni	99.85
d2j9ga3	216	Biotin carboxylase (BC), domain 2 {Escherichia col	99.85
d1ulza3	214	Biotin carboxylase (BC), domain 2 {Aquifex aeolicu	99.84
d1w96a2	170	Acetyl-CoA carboxylase, BC-N subdomain {Baker's ye	99.78
d1vkza3	220	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.75
d1w96a3	267	Acetyl-CoA carboxylase, BC-M subdomain {Baker's ye	99.75
d1a9xa6	259	Carbamoyl phosphate synthetase (CPS), large subuni	99.74
d1gsoa3	224	Glycinamide ribonucleotide synthetase (GAR-syn), d	99.69
d1ehia2	228	D-alanine:D-lactate ligase VanA, C-domain {Leucono	99.65
d1kjqa3	206	Glycinamide ribonucleotide transformylase PurT, do	99.62
d1iowa2	210	D-ala-D-ala ligase, C-domain {Escherichia coli, ge	99.61
d2r7ka2	238	5-formaminoimidazole-4-carboxamide ribonucleotide	99.61
d1uc8a2	192	Lysine biosynthesis enzyme LysX ATP-binding domain	99.6
d1e4ea2	211	D-alanine:D-lactate ligase VanA, C-domain {Enteroc	99.58
d3etja3	198	N5-carboxyaminoimidazole ribonucleotide synthetase	99.54
d2r85a2	235	5-formaminoimidazole-4-carboxamide ribonucleotide	99.54
d1i7na2	206	Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116	99.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	99.34
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	99.31
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	99.28
d2nu7b2	238	Succinyl-CoA synthetase, beta-chain, N-terminal do	99.01
d1eucb2	246	Succinyl-CoA synthetase, beta-chain, N-terminal do	98.81
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	98.38
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	98.31
d1gsaa2	192	Prokaryotic glutathione synthetase, C-domain {Esch	98.11
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.9
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.7
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.37
d1ehia1	132	D-alanine:D-lactate ligase VanA, N-domain {Leucono	97.35
d2pbza2	213	5-formaminoimidazole-4-carboxamide ribonucleotide	97.23
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.99
d1e4ea1	130	D-alanine:D-lactate ligase VanA, N-domain {Enteroc	96.68
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.67
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.56
d1uc8a1	88	Lysine biosynthesis enzyme LysX, N-terminal domain	96.5
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.43
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	96.32
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.21
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.16
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.12
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.07
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.95
d2r7ka1	123	5-formaminoimidazole-4-carboxamide ribonucleotide	95.82
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.81
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.72
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.68
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.64
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.63
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.63
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.51
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.5
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.47
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.45
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.44
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	95.36
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.33
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.33
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.3
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.26
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.22
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.22
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.19
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.18
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.17
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.16
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.12
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.12
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.11
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.07
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.06
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.02
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.0
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.93
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	94.92
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.92
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.89
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.88
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.86
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.83
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.81
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.79
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.77
d2r85a1	99	5-formaminoimidazole-4-carboxamide ribonucleotide	94.68
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.61
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.46
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.46
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.45
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.43
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.41
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	94.34
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.11
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.09
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.07
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.87
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.77
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.68
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.66
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.61
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.55
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.53
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.48
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	93.47
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.44
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.33
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.32
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.22
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.21
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.16
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.16
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.13
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.1
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	93.09
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	93.06
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.02
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.99
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.98
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.95
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.86
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	92.85
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.84
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.83
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.81
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.79
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.74
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.7
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.67
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.63
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.6
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.58
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.52
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.52
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.49
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.48
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.48
d1m1na_	477	Nitrogenase iron-molybdenum protein, alpha chain {	92.43
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.41
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.4
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.24
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	92.12
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.99
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.92
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.92
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.86
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.86
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.8
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.77
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.69
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.68
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.65
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	91.64
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.56
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	91.45
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.44
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.44
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.34
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.2
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.2
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.2
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.13
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	91.11
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	91.07
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	91.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.01
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.0
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.85
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.84
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	90.82
d1b74a1	105	Glutamate racemase {Aquifex pyrophilus [TaxId: 271	90.78
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.71
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.69
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.64
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.64
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.59
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.57
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.4
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.37
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	90.29
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.22
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.22
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.11
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.08
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	90.06
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	90.05
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.03
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.02
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.99
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	89.9
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	89.82
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.79
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.76
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.57
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	89.43
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.41
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.37
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	89.32
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.22
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.12
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.1
d2pbza1	96	5-formaminoimidazole-4-carboxamide ribonucleotide	89.01
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	89.01
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.97
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.94
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.93
d1mioa_	525	Nitrogenase iron-molybdenum protein, alpha chain {	88.87
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	88.82
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	88.59
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.53
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.31
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.27
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.25
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.23
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.11
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.04
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.03
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.97
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	87.68
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.62
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	87.51
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.45
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.42
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	87.4
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.36
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.31
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.97
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.85
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.65
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.63
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	86.59
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.58
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.29
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.2
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	86.19
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.06
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.04
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	85.98
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.91
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.9
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.86
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	85.86
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	85.66
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.49
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.49
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.39
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.99
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	84.94
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	84.75
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	84.67
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	84.65
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.49
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	84.48
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.31
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	84.26
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.01
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.79
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.49
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	83.37
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.19
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.04
d1gsaa1	122	Prokaryotic glutathione synthetase, N-terminal dom	83.02
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	82.99
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	82.99
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	82.95
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	82.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.4
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.22
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	82.08
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	81.96
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	81.81
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.77
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.59
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	81.52
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.51
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.3
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.09
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	80.93
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	80.15
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	80.03

>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.2e-21  Score=148.54  Aligned_cols=113  Identities=55%  Similarity=0.911  Sum_probs=108.5

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |++||||.++|+++.+++++++++|++++.++++.+..+.+...+|+.+.+++.+..++|++.+.+++++++.++|+|+|
T Consensus         1 m~~kvLIANRGeiA~Ri~ra~~elgi~tvavys~~D~~~~h~~~ade~v~lg~~~~~~sYl~~~~Ii~~A~~~~~dAiHP   80 (114)
T d2j9ga2           1 MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHP   80 (114)
T ss_dssp             CCSEEEECCCHHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCSEEEC
T ss_pred             CCceeeEecCCHHHHHHHHHHHHhCCceEEEeccccccccceecCCceeecCCCchhhhhcCHHHHHHHHHHhCCceeec
Confidence            68999999999999999999999999999999999999999999999999988777888999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHh
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIM  182 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~  182 (313)
                      +|||++|+..+++.+++.|+.|+||++++++.+
T Consensus        81 GyGFLSEn~~Fa~~~~~agi~FIGP~~~~i~~m  113 (114)
T d2j9ga2          81 GYGFLSENANFAEQVERSGFIFIGPKAETIRLM  113 (114)
T ss_dssp             CSSTTTTCHHHHHHHHHTTCEESSCCHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHCCCEEECcCHHHHHHc
Confidence            999999999999999999999999999999765

>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Biotin carboxylase (BC), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.86  E-value=7.4e-22  Score=149.74  Aligned_cols=114  Identities=54%  Similarity=0.922  Sum_probs=108.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      |.|||||.++|+++.+++++++++|+++++++++.+..+.+.+.+|+.+.+++.+ .++|++.+.|++++++.++|+|+|
T Consensus         1 m~kkvLIANRGEiA~Ri~ra~~elgi~tvav~s~~D~~s~~~~~ad~~~~ig~~~-~~sYln~~~Ii~~A~~~~~daihP   79 (114)
T d1ulza2           1 MVNKVLVANRGEIAVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDP-LDTYLNKQRIINLALEVGADAIHP   79 (114)
T ss_dssp             CCSSEEECCCHHHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSST-THHHHCHHHHHHHHHHTTCCEEEC
T ss_pred             CCceeeEecCCHHHHHHHHHHHHhcCCeEEEecchhhcCcchhhcceeeecCCCh-hhhhhcHHHHHHHHHHhCCCeEec
Confidence            6799999999999999999999999999999999999999999999999997543 578999999999999999999999


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD  184 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~D  184 (313)
                      +|||++|+..+++.+++.|+.|+||++++++.+.|
T Consensus        80 GyGFLSEna~Fa~~~~~~gi~FIGP~~~~i~~mGD  114 (114)
T d1ulza2          80 GYGFLAENAEFAKMCEEAGITFIGPHWKVIELMGD  114 (114)
T ss_dssp             CSSTTTTCHHHHHHHHHTTCEESSSCHHHHHHHHS
T ss_pred             chhhhhhHHHHHHHHHHCCCEEECcCHHHHHHhCC
Confidence            99999999999999999999999999999998765

>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.9e-21  Score=171.37  Aligned_cols=121  Identities=21%  Similarity=0.307  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      ||.+++++|+++|||+|++.  .+++.+++.++++++|||+||||..|+||+|+.++++.+|+.++++++...    +++
T Consensus         1 Dr~~~r~~~~~~gip~~~~~--~~~~~~ea~~~~~~ig~PvviKp~~~~gg~G~~~v~~~~el~~~~~~a~~~----~~~   74 (275)
T d1a9xa5           1 DRRRFDVAMKKIGLETARSG--IAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDL----SPT   74 (275)
T ss_dssp             SHHHHHHHHHHTTCCCCSEE--EESSHHHHHHHHHHHCSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHH----CTT
T ss_pred             CHHHHHHHHHHCCCCCCCce--EeCCHHHHHHHHHHcCCCEEEEECCCCCCCceEEeeCHHHHHHHHHHHHhh----CCC
Confidence            89999999999999999985  899999999999999999999999999999999999999999998876553    466


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCEE--EEeeccchhhcccceeEEe
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNVV--HFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv--~~~~r~~s~~r~~~~~ie~  310 (313)
                      .+++|||||+|.+|+++++++|++|+.+  ...+++|+.++++++.+++
T Consensus        75 ~~v~iEe~l~g~~e~~v~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  123 (275)
T d1a9xa5          75 KELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITV  123 (275)
T ss_dssp             SCEEEEECCTTSEEEEEEEEECTTCCEEEEEEEEESSCTTSCGGGSCEE
T ss_pred             CcEEEeeecCCchhheeeeEEecCCCEEEEEeeccccccCcccCceeEE
Confidence            8999999999988999999999988854  6679999999999998765

>d2j9ga3 d.142.1.2 (A:115-330) Biotin carboxylase (BC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.2e-21  Score=163.41  Aligned_cols=127  Identities=48%  Similarity=0.799  Sum_probs=114.6

Q ss_pred             CHHHHHHHHHHCCCCCCCCC-cccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC
Q 021372          184 DKSTARETMKNAGVPTVPGS-DGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG  262 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~-~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~  262 (313)
                      ||..++++|+++|||++|++ ...+++.+++.++++++|||+||||..++||+|+.++++.+|+.++++....+....++
T Consensus         1 dK~~~~~~~~~~GvP~vp~~~~~~~~s~dea~~~a~~iG~PvivKp~~~~ggrGv~~v~~~~el~~a~~~~~~ea~~~~~   80 (216)
T d2j9ga3           1 DKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFS   80 (216)
T ss_dssp             SHHHHHHHHHHHTCCBCCBCSSCCCSCHHHHHHHHHHHCSSEEEEEEEEETTEEEEEECSHHHHHHHHHHHHHHTC--CC
T ss_pred             CHHHHHHHHHHcCcCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEecccccCCceeEeecchhHHHHHHHHHHHHHHHhcC
Confidence            89999999999999976643 23678999999999999999999999999999999999999999999998877766777


Q ss_pred             CCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEEe
Q 021372          263 NDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHTE  310 (313)
Q Consensus       263 ~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie~  310 (313)
                      ++++++|+|++|.+++.+.++.|++|.++.+.++.|++++++++.++.
T Consensus        81 ~~~vlvE~~i~g~~~~~~~i~~dg~~~~~~~~~~~~~~~~~~~~~~~~  128 (216)
T d2j9ga3          81 NDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQRRHQKVVEE  128 (216)
T ss_dssp             CCCEEEEECCSSCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEE
T ss_pred             CCceEeeeeecCcccceeEEEEcCCCCeeeccccccCcccccCCeEEe
Confidence            889999999999889999999999999999999999999999887654

>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Biotin carboxylase (BC), domain 2
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.84  E-value=3.8e-20  Score=158.06  Aligned_cols=122  Identities=58%  Similarity=0.987  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCC
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND  264 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~  264 (313)
                      |.++|++|+++|||++|++...++|.+++.++++++|||+||||..+++|+|+.++++.+|+..+++....+........
T Consensus         1 K~~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ig~P~vvKP~~~~~s~gv~~v~~~~el~~a~~~~~~~~~~~~~~~   80 (214)
T d1ulza3           1 KARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRG   80 (214)
T ss_dssp             HHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHHcCCCEEEeeccccCCccceeeeccHHHHHHHHHHHHHHHHhcCCC
Confidence            88999999999999866433578999999999999999999999999999999999999999999998877766666778


Q ss_pred             cEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccce
Q 021372          265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIH  306 (313)
Q Consensus       265 ~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~  306 (313)
                      .+||||||+|..++...++.|+++++..++++.++++++...
T Consensus        81 ~viiEe~i~G~e~~~~~~~~d~~~~~~~i~~~~~~~~~~~~~  122 (214)
T d1ulza3          81 DLLLEKFIENPKHIEYQVLGDKHGNVIHLGERDCSIQRRNQK  122 (214)
T ss_dssp             CEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEE
T ss_pred             CceeheeecCcceeeEEEEEcCCCeEEEEeccccccCccccc
Confidence            999999999966666677888999999999999888887554

>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Acetyl-CoA carboxylase, BC-N subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.5e-19  Score=145.36  Aligned_cols=117  Identities=22%  Similarity=0.363  Sum_probs=104.0

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHcCCcE-----------EEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHH
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPC-----------VAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPN  134 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~v-----------i~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~  134 (313)
                      +..+|++||||.++|+++.+++++++++|+++           +.++++.+..+.+.+.+|+.+.+++....+.|++.+.
T Consensus        41 ~~~~~ikkvLIANRGEIA~Ri~rt~relgi~t~~~~~~~~~v~Va~~~d~D~~s~~v~~aD~~v~l~g~~~~~sYLn~~~  120 (170)
T d1w96a2          41 GGHTVISKILIANNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANAEYIRMADQYIEVPGGTNNNNYANVDL  120 (170)
T ss_dssp             TCCBCCCEEEECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSEEEECCCSSGGGTTTCHHH
T ss_pred             CCCcccceeeeecCcHHHHHHHHHHHHhcchhcccccccceeEEEecCccccccchhhhhhhhhccCCCCccchhhhHHH
Confidence            44567999999999999999999999999985           4445455677888899999999977777788999999


Q ss_pred             HHHHHHhcCCCEEeeccCcCcccHHHHHHHHHc--CCceeCCCHHHHHHh
Q 021372          135 VLSAAISRGCTMLHPGYGFLAENAVFVEMCREH--GINFIGPNPDSIRIM  182 (313)
Q Consensus       135 l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~--gi~~~g~~~~~i~~~  182 (313)
                      |++++++.++|+|+|||||++|+..+++.+++.  |+.|+||++++++.+
T Consensus       121 II~~A~~~~~DAIHPGYGFLSEn~~FA~~~~~a~~giiFIGPs~~~i~~m  170 (170)
T d1w96a2         121 IVDIAERADVDAVWAGWGHASENPLLPEKLSQSKRKVIFIGPPGNAMRSL  170 (170)
T ss_dssp             HHHHHHHTTCSEEECCSSTTTTCTHHHHHHHHSTTCCEESSCCHHHHHHS
T ss_pred             HHHHHHhcCCCEEEechhhhhhCHHHHHHHHHhcCCCEEECcCHHHHHhC
Confidence            999999999999999999999999999999876  999999999998753

>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.1e-18  Score=147.53  Aligned_cols=105  Identities=17%  Similarity=0.197  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      +|..+|++|+++|||+|++.  .++|.+++.++++++|||+||||..++||+||++++|.+++.++++.+.........+
T Consensus         1 sK~~~K~~l~~~gIptp~~~--~~~~~~e~~~~~~~ig~PvVvKP~~~~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~   78 (220)
T d1vkza3           1 SKVYAKRFMKKYGIRTARFE--VAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVK   78 (220)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHTTSCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCC
T ss_pred             CHHHHHHHHHHCCCCCCCeE--EeCCHHHHHHHHHHcCCCEEEEeccccccccceeeccHHHHHHHhhhhcccccccccc
Confidence            58999999999999999984  8999999999999999999999999999999999999999999999887544333345


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCEEE
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNVVH  292 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv~  292 (313)
                      ..+++|||++| .|++++++.++. .+..
T Consensus        79 ~~vliEe~i~g-~e~~v~~~~~~~-~~~~  105 (220)
T d1vkza3          79 GPVVIDEFLAG-NELSAMAVVNGR-NFVI  105 (220)
T ss_dssp             SCEEEEECCCS-EEEEEEEEEETT-EEEE
T ss_pred             ceEeeeccccc-ccceeEEEEeCC-EEEE
Confidence            78999999999 999999999843 4443

>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Acetyl-CoA carboxylase, BC-M subdomain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.1e-17  Score=147.30  Aligned_cols=121  Identities=38%  Similarity=0.675  Sum_probs=105.5

Q ss_pred             CCHHHHHHHHHHCCCCCCCCC------------------------cccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEE
Q 021372          183 GDKSTARETMKNAGVPTVPGS------------------------DGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMR  238 (313)
Q Consensus       183 ~DK~~~~~~l~~~Gip~p~~~------------------------~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~  238 (313)
                      .||..++++++++|||+.++.                        ...+.+.+++.++++++|||+||||..|+||+||.
T Consensus         1 gdK~~ak~lA~~~GVP~vp~s~~~id~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~igfPvvVKP~~~~gs~Gv~   80 (267)
T d1w96a3           1 GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIR   80 (267)
T ss_dssp             CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCSSEEEEETTCCTTTTEE
T ss_pred             CCHHHHHHHHHHhCcCCCCCCCCccchHHHHHHhhhhccccccccccccCCHHHHHHHHHhcCCCEEEEeecccCCeeEE
Confidence            489999999999999986631                        12467899999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhccccee
Q 021372          239 LAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHT  307 (313)
Q Consensus       239 ~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~  307 (313)
                      ++++.+|+.++++.+....    .+.++||||||+|.+++.+.++.++.|..+.+.++.+..++++...
T Consensus        81 iv~~~~el~~a~~~a~~~s----~~~~vlVEe~I~G~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  145 (267)
T d1w96a3          81 QVEREEDFIALYHQAANEI----PGSPIFIMKLAGRARHLEVQLLADQYGTNISLFGRDCSVQRRHQKI  145 (267)
T ss_dssp             EECSHHHHHHHHHHHHHHS----TTCCEEEEECCCSCEEEEEEEEECTTSCEEEEEEEEEEEEETTEEE
T ss_pred             eecccchhhhhhhhhhhhc----ccchhhhhhhccchhhhhhhheeccCcceeeecccccccccccccc
Confidence            9999999999999877653    4578999999999888888999999999999999999888876653

>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.6e-18  Score=151.63  Aligned_cols=115  Identities=19%  Similarity=0.349  Sum_probs=87.1

Q ss_pred             HHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcE
Q 021372          187 TARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV  266 (313)
Q Consensus       187 ~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~v  266 (313)
                      +|+++|+++|||+|++.  .+++.+++.++++++|||+||||..+.||+|+.+++|.+||.++++......    ++.++
T Consensus         1 rF~~~l~~lgi~~p~~~--~v~s~~ea~~~a~~iGfPvivKps~~~gG~G~~iv~~~~el~~~~~~a~~~~----~~~~v   74 (259)
T d1a9xa6           1 RFQHAVERLKLKQPANA--TVTAIEMAVEKAKEIGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVS----NDAPV   74 (259)
T ss_dssp             HHHHHHHHHTCCCCCEE--ECCSHHHHHHHHHHHCSSEEEEC-------CEEEECSHHHHHHHHHHCC------------
T ss_pred             ChHHHHHHCCCCCCCce--EECCHHHHHHHHHHhCCCEEEEECCCCCCCccEeecCHHHHHHHhhhhhccc----ccchh
Confidence            58899999999999995  8999999999999999999999999999999999999999999998765443    45789


Q ss_pred             EEeeccCCCcEEEEEEEEcCCCCEEEEeeccchhhcccceeEE
Q 021372          267 YLEKYVQNPRHIEFQVLADKYGNVVHFGERDCSIQVIEIHTHT  309 (313)
Q Consensus       267 lvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s~~r~~~~~ie  309 (313)
                      ++|+||+|.+|++|++++|++ .+ .++...+.++++..|..|
T Consensus        75 lie~~i~~~~Eiev~~i~Dg~-~~-~i~~i~e~i~~~gvhsgd  115 (259)
T d1a9xa6          75 LLDHFLDDAVEVDVDAICDGE-MV-LIGGIMEHIEQAGVHSGD  115 (259)
T ss_dssp             EEEBCCTTCEEEEEEEEECSS-CE-EEEEEEEESSCTTSCGGG
T ss_pred             hhhhhcCCCeEEEEEEEEeCC-cE-EEEeeeeccccCcceeEe
Confidence            999999999999999999954 33 455566777777665433

>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.4e-17  Score=142.77  Aligned_cols=106  Identities=20%  Similarity=0.301  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      +|..+|++|+++|||+|++  ..+++.+++.+++++++||+||||..+++|+||+++++.+++.++++.+.........+
T Consensus         1 SK~f~K~~~~~~~IPt~~~--~~~~~~~ea~~~~~~~~~P~VvK~~~~~~gkGv~i~~~~~e~~~a~~~~~~~~~~~~~~   78 (224)
T d1gsoa3           1 SKAFTKDFLARHKIPTAEY--QNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMTLEEAEAAVHDMLAGNAFGDAG   78 (224)
T ss_dssp             CHHHHHHHHHHTTCCBCCE--EEESSSSHHHHHHHHHCSSEEEEC------CCEEEESSHHHHHHHHTTTTCSCCTTCTT
T ss_pred             CHHHHHHHHHHcCCCCCCc--eEeCCHHHHHHHHHHcCCCEEEEeCCcccccceeeehhHHHHHHHHHHHHhcccccccC
Confidence            5889999999999999998  48899999999999999999999999999999999999999999998875432112224


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ..++|||||.| .|+++.++.|+. +++.+
T Consensus        79 ~~vliEefl~G-~E~s~~~i~dg~-~~~~~  106 (224)
T d1gsoa3          79 HRIVIEEFLDG-EEASFIVMVDGE-HVLPM  106 (224)
T ss_dssp             CCEEEEECCCE-EEEEEEEEEESS-CEEEE
T ss_pred             ceEEeeccccc-ccceeEEEeccC-ceEee
Confidence            67999999999 999999999954 66555

>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA, C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=99.65  E-value=1.5e-16  Score=136.28  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=87.9

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCC----HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHh
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQS----TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAA  259 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~----~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~  259 (313)
                      ||..++++|+++|||+|++.  .++.    .+.+.++++.+|||+|+||..|++|.||.+++|.+|+..+++.+...   
T Consensus         1 dK~~~k~~l~~~gi~tp~~~--~~~~~~~~~~~~~~~~~~~g~P~VvKP~~g~~s~GV~~~~~~~el~~~~~~~~~~---   75 (228)
T d1ehia2           1 DKALTKELLTVNGIRNTKYI--VVDPESANNWSWDKIVAELGNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQY---   75 (228)
T ss_dssp             SHHHHHHHHHTTTCCCCCEE--EECTTGGGGCCHHHHHHHHCSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTT---
T ss_pred             CHHHHHHHHHHcCCCCCCEE--EEchhhcChHHHHHHHHHhCCCEEEEEeccCCCccceeccccchhhhhhhhhccc---
Confidence            89999999999999999985  4432    23455677889999999999999999999999999999999887543   


Q ss_pred             cCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccc
Q 021372          260 AFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDC  298 (313)
Q Consensus       260 ~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~  298 (313)
                         ...+++|||+.|.+|+++.++.+.++.+..+....+
T Consensus        76 ---~~~~liee~i~g~~e~~~~~~~~~~~~~~~~~~~~~  111 (228)
T d1ehia2          76 ---DYKVLIEEAVNGARELEVGVIGNDQPLVSEIGAHTV  111 (228)
T ss_dssp             ---CSCEEEEECCCCSCEEEEEEEESSSCEEEEEEEEEC
T ss_pred             ---ccccccceEEeccceEEEEEeeCCCcceeeeeeeec
Confidence               378999999999889999888886655555544433

>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide transformylase PurT, domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: Glycinamide ribonucleotide transformylase PurT, domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=7.8e-16  Score=129.26  Aligned_cols=106  Identities=15%  Similarity=0.256  Sum_probs=87.7

Q ss_pred             CHHHHHHHH-HHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCC
Q 021372          184 DKSTARETM-KNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFG  262 (313)
Q Consensus       184 DK~~~~~~l-~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~  262 (313)
                      ||.++|+++ +++|||+|+|.  .+.+.+++.++++++|||+||||..|+||+|++++++.+|+.++++......  ...
T Consensus         1 ~~~~~rrla~~~~Gip~p~~~--~v~s~~dl~~~~~~ig~PvVvKP~~g~gs~gv~~v~~~~el~~a~~~~~~~~--~~~   76 (206)
T d1kjqa3           1 NREGIRRLAAEELQLPTSTYR--FADSESLFREAVADIGYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGG--RAG   76 (206)
T ss_dssp             SHHHHHHHHHTTSCCCBCCEE--EESSHHHHHHHHHHHCSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHS--GGG
T ss_pred             ChHHHHHHHHHHCCCCCCCCe--EECCHHHHHHHHHHhCCCEEEeeccCCccCCceEEcCHHHHHHHHHHHHhhc--ccC
Confidence            789999987 68999999994  8999999999999999999999999999999999999999999998776543  223


Q ss_pred             CCcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          263 NDGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       263 ~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ...+++|+++.+..++.+.+..+.+|.....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (206)
T d1kjqa3          77 AGRVIVEGVVKFDFEITLLTVSAVDGVHFCA  107 (206)
T ss_dssp             CCCEEEEECCCCSEEEEEEEEEETTEEEECC
T ss_pred             cceeeeeeccccceeeeeeeeecCCCceeec
Confidence            4678999999887888888888876555443

>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-ala-D-ala ligase, C-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=99.61  E-value=4e-16  Score=131.83  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCC-------HHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHH
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQS-------TEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEA  257 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~-------~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~  257 (313)
                      |.+++++|+++|||+|++.  .+.+       .++.......++||+|+||..|++|+||.++++.+++.++++....  
T Consensus         1 K~~tk~~~~~~Giptp~~~--~~~~~~~~~~~~~~~~~~~~~l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~--   76 (210)
T d1iowa2           1 KLRSKLLWQGAGLPVAPWV--ALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQ--   76 (210)
T ss_dssp             HHHHHHHHHHTTCCBCCEE--EEEHHHHHHCCCTHHHHHHHTTCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHTT--
T ss_pred             CHHHHHHHHHcCCCCCCeE--EEechhhcccchHHHHHHHHhcCCCEEEeeccccCceecccccchhhhhHHHHHhhc--
Confidence            8899999999999999984  4432       2344456678999999999999999999999999999999886543  


Q ss_pred             HhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeeccch
Q 021372          258 AAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERDCS  299 (313)
Q Consensus       258 ~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~~s  299 (313)
                          .+..+++|+|++| .|+++.++.+..+..+.+....+.
T Consensus        77 ----~~~~vlve~~i~g-~e~~~~v~~~~~~~~~~~~~~~~~  113 (210)
T d1iowa2          77 ----HDEEVLIEKWLSG-PEFTVAILGEEILPSIRIQPSGTF  113 (210)
T ss_dssp             ----TCSEEEEEECCCC-CEEEEEEETTEECCCEEEECSSSS
T ss_pred             ----cCccccccccccC-ceeEEEeecCcccceeEEecccce
Confidence                2478999999999 999999998765555555444443

>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=3.5e-16  Score=135.22  Aligned_cols=94  Identities=18%  Similarity=0.291  Sum_probs=74.6

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcC-C
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAF-G  262 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~-~  262 (313)
                      ||..+|++|+++|||+|+.+    .       .++++|||+||||..|+||+||++++|.+++.++++.+.+.....+ .
T Consensus         1 DK~~~k~~l~~~Gip~P~~~----~-------~~~~i~~PvVVKP~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~   69 (238)
T d2r7ka2           1 ERSLEGKLLREAGLRVPKKY----E-------SPEDIDGTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDED   69 (238)
T ss_dssp             CHHHHHHHHHHTTCCCCCEE----S-------SGGGCCSCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHH
T ss_pred             CHHHHHHHHHHCCCCCcccc----c-------CHhHCCCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHhhccCC
Confidence            89999999999999999863    1       2457899999999999999999999999999999998765321111 1


Q ss_pred             CCcEEEeeccCCCcEEEEEEEEcCCCC
Q 021372          263 NDGVYLEKYVQNPRHIEFQVLADKYGN  289 (313)
Q Consensus       263 ~~~vlvEe~I~G~~e~~v~v~~d~~G~  289 (313)
                      ..++++||||+| .++++.++.+..+.
T Consensus        70 ~~~v~vEe~i~G-~e~~v~~~~~~~~~   95 (238)
T d2r7ka2          70 IANAHIEEYVVG-TNFCIHYFYSPLKD   95 (238)
T ss_dssp             HHHCEEEECCCS-EEEEEEEEEETTTT
T ss_pred             CCcEEEEEeecC-ceEEEEEeeccccc
Confidence            257999999999 99999998875433

>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX ATP-binding domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Lysine biosynthesis enzyme LysX ATP-binding domain
domain: Lysine biosynthesis enzyme LysX ATP-binding domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=2.7e-16  Score=130.61  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCC
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGND  264 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~  264 (313)
                      |+.++++|+++|||+|+|+  .+.+.+++.++++++|||+|+||..|++|+||.++.+.++..........  .....+.
T Consensus         1 K~~~~~~l~~~GipvP~t~--~~~~~~~~~~~~~~~g~P~ivKP~~g~~g~gv~~~~~~~~~~~~~~~~~~--~~~~~~~   76 (192)
T d1uc8a2           1 KWATSVALAKAGLPQPKTA--LATDREEALRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV--LGGFQHQ   76 (192)
T ss_dssp             HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTT
T ss_pred             CHHHHHHHHHcCcCCCCEE--EECCHHHHHHHHHHhCCCEEEECCcCCcccceeeccccccchhhHHHHHH--HhccCCC
Confidence            8999999999999999995  88999999999999999999999999999999877666655544332211  1223457


Q ss_pred             cEEEeeccCCCcEEEEEEEEcCCCCEEEEee
Q 021372          265 GVYLEKYVQNPRHIEFQVLADKYGNVVHFGE  295 (313)
Q Consensus       265 ~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~  295 (313)
                      ++++||||+| .++++.++.. +|+++....
T Consensus        77 ~~lvqefi~g-~~~~~~v~~~-~g~~~~~~~  105 (192)
T d1uc8a2          77 LFYIQEYVEK-PGRDIRVFVV-GERAIAAIY  105 (192)
T ss_dssp             CEEEEECCCC-SSCCEEEEEE-TTEEEEEEE
T ss_pred             CEEEEEecCC-CCeeEEEEEE-CCEEEeEEE
Confidence            8999999999 5556676666 346655533

>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA, C-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: D-alanine:D-lactate ligase VanA, C-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=99.58  E-value=6.4e-16  Score=130.66  Aligned_cols=96  Identities=23%  Similarity=0.355  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      ||+.++++++++|||+|++.  .+.+.++  ..+++++||+|+||..|++|+||.++++.+|+.++++.+...      .
T Consensus         1 DK~~~~~~~~~~Gi~tP~~~--~~~~~~~--~~~~~~~fP~viKP~~gg~s~Gv~~v~~~~el~~~~~~~~~~------~   70 (211)
T d1e4ea2           1 DKSLTYIVAKNAGIATPAFW--VINKDDR--PVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQY------D   70 (211)
T ss_dssp             SHHHHHHHHHHTTCBCCCEE--EECTTCC--CCGGGSCSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTT------C
T ss_pred             CHHHHHHHHHHCCCCCCCeE--EECchhH--HHHHhcCCCEEEeeccccCcchhccccccccchhhccccccc------c
Confidence            89999999999999999985  5554333  245689999999999999999999999999999999887543      3


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCE
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNV  290 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~v  290 (313)
                      ..+++|+|++| .++++.++.+..+.+
T Consensus        71 ~~~~~e~~~~~-~~~~~~~~~~~~~~~   96 (211)
T d1e4ea2          71 SKILIEQAVSG-CEVGCAVLGNSAALV   96 (211)
T ss_dssp             SSEEEEECCCS-EEEEEEEEEETTCCE
T ss_pred             ccccccccccc-ccceeeccCCCccee
Confidence            67999999999 999999999865444

>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: BC ATP-binding domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.7e-15  Score=125.05  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      ||..||++|+++|||+|++.  .+.+.+|+.++++++|||+|+||..|++|.|+.++.+.+++......         ..
T Consensus         1 DK~~~K~~l~~~GIptp~~~--~v~s~~d~~~~~~~ig~P~vvKp~~~~~~~~~~~v~~~~~~~~~~~~---------~~   69 (198)
T d3etja3           1 DRLTQKQLFDKLHLPTAPWQ--LLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAE---------CY   69 (198)
T ss_dssp             SHHHHHHHHHHTTCCBCCEE--EECCGGGHHHHHHHHCSCEEEEESSSCBTTBSEEEECGGGGGGSCGG---------GT
T ss_pred             CHHHHHHHHHHCCcCCCCce--EECCHHHHHHHHHHcCCCeeeeecccccccceeeecchhhHHHHHhc---------cC
Confidence            89999999999999999994  89999999999999999999999988866665555555555443322         24


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCCCCEEEE
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKYGNVVHF  293 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~  293 (313)
                      ..+++|+|+.++.++++.++.+..+.+...
T Consensus        70 ~~~i~ee~i~~~~~~~~~~~~~~~~~~~~~   99 (198)
T d3etja3          70 GECIVEQGINFSGEVSLVGARGFDGSTVFY   99 (198)
T ss_dssp             TTEEEEECCCCSEEEEEEEEECTTSCEEEC
T ss_pred             ceEEEeeeccccccccceeeecccceeeee
Confidence            789999999987899999999888777654

>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.54  E-value=6.4e-15  Score=126.57  Aligned_cols=91  Identities=22%  Similarity=0.361  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCC
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGN  263 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~  263 (313)
                      ||..||++|+++|||+|+.+    +       .+++++||+||||..|+||+|++++++.+++.+.++.+....... ..
T Consensus         1 DK~~~k~~l~~~Gip~P~~~----~-------~~~~i~~P~IVKP~~g~gs~Gv~~v~~~~e~~~~~~~~~~~~~~~-~~   68 (235)
T d2r85a2           1 DRNLERKWLKKAGIRVPEVY----E-------DPDDIEKPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKE-DL   68 (235)
T ss_dssp             SHHHHHHHHHHTTCCCCCBC----S-------CGGGCCSCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGG-GC
T ss_pred             CHHHHHHHHHHcCCCCchhh----h-------CHHHcCCCEEEEECCCCCCCCeEEEechHHHHHHHHHHHhhhhhC-CC
Confidence            89999999999999999864    2       234689999999999999999999999999999998875322111 23


Q ss_pred             CcEEEeeccCCCcEEEEEEEEcCC
Q 021372          264 DGVYLEKYVQNPRHIEFQVLADKY  287 (313)
Q Consensus       264 ~~vlvEe~I~G~~e~~v~v~~d~~  287 (313)
                      ..+++|||++| .++.++.+.+..
T Consensus        69 ~~~iiee~i~G-~~~~~~~~~~~~   91 (235)
T d2r85a2          69 KNIQIQEYVLG-VPVYPHYFYSKV   91 (235)
T ss_dssp             CSEEEEECCCC-EEEEEEEEEETT
T ss_pred             cchhHHhhcCC-eEEEEEEeeccc
Confidence            68999999999 999999988754

>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Synapsin C-terminal domain
domain: Synapsin II
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.1e-13  Score=116.71  Aligned_cols=115  Identities=13%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             CCHHHHHHhCCHHHH--HHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHH
Q 021372          174 PNPDSIRIMGDKSTA--RETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQ  251 (313)
Q Consensus       174 ~~~~~i~~~~DK~~~--~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~  251 (313)
                      ++++++..|.||..+  +.++...+++.|........+..+..++....+||+|+||..|++|+||.++++.+++..++.
T Consensus         1 Ns~~si~~~~dK~~v~~~l~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~PvVvKP~~g~~g~Gv~~v~~~~~l~~~~~   80 (206)
T d1i7na2           1 NSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYYPNHREMLTLPTFPVVVKIGHAHSGMGKVKVENHYDFQDIAS   80 (206)
T ss_dssp             SCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEESSGGGGSSCCCSSEEEEESSCSTTTTEEEECSHHHHHHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHHhcccCCCccceeecccccchhHHhhhcCCceEEecCCCCCCCCeEEEeecchhhhHHH
Confidence            578999999999543  333333333333321011122223334445678999999999999999999999999999998


Q ss_pred             HHHHHHHhcCCCCcEEEeeccCCCcEEEEEEEEcCCCCEEEEeecc
Q 021372          252 QAKSEAAAAFGNDGVYLEKYVQNPRHIEFQVLADKYGNVVHFGERD  297 (313)
Q Consensus       252 ~~~~~~~~~~~~~~vlvEe~I~G~~e~~v~v~~d~~G~vv~~~~r~  297 (313)
                      .+...      +..+++||||++..|++|.++.+   +++.+..+.
T Consensus        81 ~~~~~------~~~~~vqe~I~~~~dirv~vig~---~~~~~~~~~  117 (206)
T d1i7na2          81 VVALT------QTYATAEPFIDAKYDIRVQKIGN---NYKAYMRTS  117 (206)
T ss_dssp             HHHHH------TCCEEEEECCCEEEEEEEEEETT---EEEEEEEES
T ss_pred             HHhhc------cCeEEEEEeecccceEEEEEEec---ceeEEEeec
Confidence            87665      37899999998768999998843   566665543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.1e-11  Score=93.61  Aligned_cols=98  Identities=16%  Similarity=0.210  Sum_probs=83.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      ..||+|+|+|.+|+.++.+++++|+++++++++++.  +...++++++..+       |.|.+.+.+++.++++|+|.  
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~--PA~~va~~~i~~~-------~~d~~~l~~~~~~~~~DviT--   79 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA--PAMHVAHRSHVIN-------MLDGDALRRVVELEKPHYIV--   79 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC--GGGGGSSEEEECC-------TTCHHHHHHHHHHHCCSEEE--
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC--chhhcCCeEEECC-------CCCHHHHHHHHHhhCCceEE--
Confidence            568999999999999999999999999999766664  4578899988553       78899999999999999997  


Q ss_pred             cCcCccc--HHHHHHHHHcCCceeCCCHHHHHHh
Q 021372          151 YGFLAEN--AVFVEMCREHGINFIGPNPDSIRIM  182 (313)
Q Consensus       151 ~g~~~e~--~~~~~~l~~~gi~~~g~~~~~i~~~  182 (313)
                        +..|+  ....+.+++.|+++. |++++++++
T Consensus        80 --~E~EnI~~~~L~~le~~g~~v~-Ps~~al~it  110 (111)
T d1kjqa2          80 --PEIEAIATDMLIQLEEEGLNVV-PCARATKLT  110 (111)
T ss_dssp             --ECSSCSCHHHHHHHHHTTCEES-SCHHHHHHH
T ss_pred             --EEecCcCHHHHHHHHHCCCeEC-CCHHHHHhh
Confidence              44455  677788899999987 999998875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.7e-12  Score=96.29  Aligned_cols=106  Identities=20%  Similarity=0.220  Sum_probs=91.2

Q ss_pred             ccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHH
Q 021372           71 QEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAA  139 (313)
Q Consensus        71 ~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~  139 (313)
                      .+||||+|+|++           +.+.+++|++.|+++++++++|...+.....+|+.| +.       +.+.+.+.+++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lY-fe-------plt~e~v~~Ii   75 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLY-FE-------PVTLEDVLEIV   75 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEE-CC-------CCSHHHHHHHH
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceE-Ec-------cCCHHHHHHHH
Confidence            589999999884           789999999999999999999999999889999988 43       47899999999


Q ss_pred             HhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCH
Q 021372          140 ISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDK  185 (313)
Q Consensus       140 ~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK  185 (313)
                      +.+++|+|++.+|--. ...++..|++.|++++|.+++++..+.|+
T Consensus        76 ~~E~p~~ii~~~GGQt-alnla~~L~~~gv~iLGt~~~~Id~aEDR  120 (121)
T d1a9xa4          76 RIEKPKGVIVQYGGQT-PLKLARALEAAGVPVIGTSPDAIDRAEDR  120 (121)
T ss_dssp             HHHCCSEEECSSSTHH-HHTTHHHHHHTTCCBCSSCHHHHHHHHSH
T ss_pred             HHhCCCEEEeehhhhh-HHHHHHHHHHcCCcEECCCHHHHHHHHCc
Confidence            9999999999875211 12345668899999999999999998886

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=8.7e-12  Score=95.42  Aligned_cols=105  Identities=19%  Similarity=0.182  Sum_probs=86.0

Q ss_pred             cccEEEEEcCCHh-----------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHH
Q 021372           70 RQEKILVANRGEI-----------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        70 ~~~~ILIig~g~~-----------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      ..+||||+|+|++           +.+.+++|++.|+++++++++|...+.....+|+.| +.       +.+.+.+.++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lY-fe-------Plt~e~v~~I   77 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATY-IE-------PIHWEVVRKI   77 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEE-CS-------CCCHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceee-ee-------cCCHHHHHHH
Confidence            3689999999884           789999999999999999999999999999999988 43       4889999999


Q ss_pred             HHhcCCCEEeeccCcCccc---HH--HHHHHHHcCCceeCCCHHHHHHh
Q 021372          139 AISRGCTMLHPGYGFLAEN---AV--FVEMCREHGINFIGPNPDSIRIM  182 (313)
Q Consensus       139 ~~~~~id~vip~~g~~~e~---~~--~~~~l~~~gi~~~g~~~~~i~~~  182 (313)
                      ++++++|+|++.+|--...   ..  ....+++.|++++|.+.+++..+
T Consensus        78 i~~E~pd~il~~~GGQtalnla~~L~~~giL~~~~v~iLGt~~~sId~a  126 (127)
T d1a9xa3          78 IEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKA  126 (127)
T ss_dssp             HHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHHTCEECSSCHHHHHHH
T ss_pred             HHHhCcCCeEEEeeeehHhHHHHHHHHcCcHHhcCCeEECCCHHHHHHh
Confidence            9999999999987521111   01  11235677899999999998764

>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=6.5e-10  Score=95.19  Aligned_cols=108  Identities=16%  Similarity=0.297  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC-cEEEeeccCCCC----ccEEEeCCHHHHHHHHHHHHHHHHh
Q 021372          185 KSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKATAGGGG----RGMRLAKEPDEFVKLLQQAKSEAAA  259 (313)
Q Consensus       185 K~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~~g~gg----~GV~~v~~~~el~~~~~~~~~~~~~  259 (313)
                      -+..|++|+++|||+|++.  ++.+.+++.+.++++|| |+|+|.....++    .||.++.+.+|..+....+......
T Consensus         5 E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~iG~~pvVlKaq~~~~hk~~~GGV~~~~~~~e~~~~a~~~~~~~~~   82 (238)
T d2nu7b2           5 EYQAKQLFARYGLPAPVGY--ACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLV   82 (238)
T ss_dssp             HHHHHHHHHHTTCCCCCEE--EESSHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEEC
T ss_pred             HHHHHHHHHHcCCCCCCce--EECCHHHHHHHHHHhCCCcEEEEEeecccccccceEEEeccccHHHHHHHHHHhCccee
Confidence            5788999999999999994  88999999999999995 999997433333    3788899999888777765421100


Q ss_pred             c----C---CCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEEe
Q 021372          260 A----F---GNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHFG  294 (313)
Q Consensus       260 ~----~---~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~~  294 (313)
                      .    .   .-..+++|+++++.+|+-+.+..|. .|.++.++
T Consensus        83 ~~~~~~~g~~v~~vlve~~~~~~~E~~lg~~~D~~~g~~~l~~  125 (238)
T d2nu7b2          83 TYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMA  125 (238)
T ss_dssp             CTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEE
T ss_pred             eeccccCCcccceeeecceeecccceEEEEEEeccCCceEEEE
Confidence            0    0   0236999999998899999999997 67777665

>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Succinyl-CoA synthetase, beta-chain, N-terminal domain
domain: Succinyl-CoA synthetase, beta-chain, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=7.8e-09  Score=88.73  Aligned_cols=108  Identities=20%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCC-cEEEeeccC--C---------CCccEEEeCCHHHHHHHHH
Q 021372          184 DKSTARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGF-PVMIKATAG--G---------GGRGMRLAKEPDEFVKLLQ  251 (313)
Q Consensus       184 DK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~~g--~---------gg~GV~~v~~~~el~~~~~  251 (313)
                      +-+..|++|+++|||+|++.  +++|.+++.++++++|| |+|+|+.--  .         ..-||..+.|.+|+.++.+
T Consensus         5 ~E~eaK~lL~~yGIpvp~~~--~a~s~~ea~~~a~~ig~~~vVlK~qv~~g~r~~~~~~k~~~GgV~~~~~~ee~~~~a~   82 (246)
T d1eucb2           5 QEYQSKKLMSDNGVKVQRFF--VADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAK   82 (246)
T ss_dssp             CHHHHHHHHHTTTCCCCCEE--EESSHHHHHHHHHHHTCSSEEEEECCSSSCCTTCEETTSCBCSEEEESCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCCCCee--EECCHHHHHHHHHHhCCCeEEEEEeeccccccccccccCCcceEEEecChhHHHHHhh
Confidence            57889999999999999994  88999999999999996 899998421  1         1246788999999998887


Q ss_pred             HHHHHHHhc---C----CCCcEEEeeccCCCcEEEEEEEEcC-CCCEEEE
Q 021372          252 QAKSEAAAA---F----GNDGVYLEKYVQNPRHIEFQVLADK-YGNVVHF  293 (313)
Q Consensus       252 ~~~~~~~~~---~----~~~~vlvEe~I~G~~e~~v~v~~d~-~G~vv~~  293 (313)
                      .+.......   .    .-..+++|+.++.+.|+-+.+..|. +|.++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~vlve~~~~~~~E~~vg~~~D~~~g~~~l~  132 (246)
T d1eucb2          83 QMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLV  132 (246)
T ss_dssp             TTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEEGGGTEEEEE
T ss_pred             hhhcchhhhhhccccccccccceehhcccccceeeeeeeecccccceeEE
Confidence            654211000   0    0246899999999899999999986 5655544

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=98.31  E-value=1.1e-06  Score=63.75  Aligned_cols=86  Identities=20%  Similarity=0.147  Sum_probs=67.9

Q ss_pred             cccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           70 RQEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        70 ~~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      |++||+|+.+|.+         |..+.+++++.|++++.++.+.....                             ..+
T Consensus         1 M~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~~~~~~-----------------------------~~~   51 (96)
T d1iowa1           1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVT-----------------------------QLK   51 (96)
T ss_dssp             CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGG-----------------------------GTT
T ss_pred             CCceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCccccch-----------------------------hhh
Confidence            6788999998874         78999999999999998854322110                             001


Q ss_pred             hcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCC
Q 021372          141 SRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGD  184 (313)
Q Consensus       141 ~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~D  184 (313)
                      ..++|.+++. +|...|+..+..+|+.+++|+.|++..+..++.|
T Consensus        52 ~~~~d~vF~~lHG~~GEdG~iQ~~le~l~IPytGs~~~asal~~D   96 (96)
T d1iowa1          52 SMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMD   96 (96)
T ss_dssp             TTTEEEEEECCCSTTTSSSHHHHHHHHHTCCBSSCCHHHHHHHHC
T ss_pred             ccCceeEEEeccCcchhccHHHHHHHHcCCCccCCCHHHHHHhcC
Confidence            2357888887 6888899999999999999999999999888765

>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase, C-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: ATP-binding domain of peptide synthetases
domain: Prokaryotic glutathione synthetase, C-domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.7e-06  Score=70.77  Aligned_cols=80  Identities=14%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcEEEeeccCC--Cc
Q 021372          199 TVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEKYVQN--PR  276 (313)
Q Consensus       199 ~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~I~G--~~  276 (313)
                      +|+|+  +..+.+++.++.++.| |+|+||..|++|+||.++.+.+...........    ......+++|+|++.  +.
T Consensus        13 ~P~Tl--it~~~~~~~~f~~~~g-~vV~Kpl~gs~G~gv~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~~~~~~~   85 (192)
T d1gsaa2          13 TPETL--VTRNKAQLKAFWEKHS-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLT----EHGTRYCMAQNYLPAIKDG   85 (192)
T ss_dssp             SCCEE--EESCHHHHHHHHHHHS-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHT----TTTTSCEEEEECCGGGGGC
T ss_pred             CCCeE--EECCHHHHHHHHHHcC-CeEEEEcCCCeEEEEEEeecCchhhhHHHHHHH----hcCccccccccccccccCc
Confidence            78995  8899999999999987 999999999999999999755433222222111    123467899999975  37


Q ss_pred             EEEEEEEEc
Q 021372          277 HIEFQVLAD  285 (313)
Q Consensus       277 e~~v~v~~d  285 (313)
                      ++.+.++.+
T Consensus        86 d~Rv~vv~~   94 (192)
T d1gsaa2          86 DKRVLVVDG   94 (192)
T ss_dssp             EEEEEEETT
T ss_pred             eeEEEEECC
Confidence            898888866

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=6.1e-06  Score=57.01  Aligned_cols=48  Identities=15%  Similarity=0.242  Sum_probs=39.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEc
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCI  120 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v  120 (313)
                      +|+|.|+|+|.+|+.++.+++++|+++++++++++.++  ...++..+..
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa--~~~a~dvIT~   48 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAA--VPFQQSVITA   48 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGG--SCGGGSEEEE
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcc--cccccceEEE
Confidence            58999999999999999999999999999976665444  5566666654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00027  Score=50.15  Aligned_cols=89  Identities=10%  Similarity=0.124  Sum_probs=58.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .|||+|+|-|.+|+.+++.|.+.|.+|++.|................+.+.       ..+.+.+      .++|.|+..
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------~~~d~vi~S   71 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTG-------SLNDEWL------MAADLIVAS   71 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEES-------BCCHHHH------HHCSEEEEC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeec-------ccchhhh------ccCCEEEEC
Confidence            578999999999999999999999999999875543332221112222221       1222222      247999987


Q ss_pred             cCcCcccHHHHHHHHHcCCceeC
Q 021372          151 YGFLAENAVFVEMCREHGINFIG  173 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g  173 (313)
                      .|.-..+ ...+.+.+.|++++|
T Consensus        72 PGi~~~~-~~~~~a~~~gi~iiG   93 (93)
T d2jfga1          72 PGIALAH-PSLSAAADAGIEIVG   93 (93)
T ss_dssp             TTSCTTS-HHHHHHHHTTCEEEC
T ss_pred             CCCCCCC-HHHHHHHHcCCCeEC
Confidence            7654444 445556688998875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=0.00019  Score=58.48  Aligned_cols=74  Identities=14%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .|+||+|+| .|.+|..+++.|.+.|++|+++..++..........-+.+..       +..+.+.+.+.++  ++|+|+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~g-------D~~d~~~l~~al~--~~d~vi   72 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVG-------DVLQAADVDKTVA--GQDAVI   72 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEES-------CTTSHHHHHHHHT--TCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccc-------cccchhhHHHHhc--CCCEEE
Confidence            478899999 678999999999999999999976554332211111233322       2556777777764  589888


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      ...+
T Consensus        73 ~~~g   76 (205)
T d1hdoa_          73 VLLG   76 (205)
T ss_dssp             ECCC
T ss_pred             EEec
Confidence            7654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.37  E-value=0.00026  Score=53.51  Aligned_cols=73  Identities=18%  Similarity=0.079  Sum_probs=48.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      ++|+|+|.|..|+.+++.|.+.|++|++++.+++.........+..+..+      +..+.+.+.+ +.-...|+++...
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~G------d~~~~~~l~~-~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVING------DCTKIKTLED-AGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEES------CTTSHHHHHH-TTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccC------cccchhhhhh-cChhhhhhhcccC
Confidence            58999999999999999999999999999877654432222223333232      1234444443 3335688888653

>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-alanine:D-lactate ligase VanA, N-domain
species: Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]

Probab=97.35  E-value=0.00024  Score=54.05  Aligned_cols=109  Identities=8%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             ccEEEEEcCCHh---------HHHHHHHHHHcC-CcEEEEecCCCcchhhhhhcCceEEcc----------CCCCCCCcC
Q 021372           71 QEKILVANRGEI---------AVRVIRTAHEMG-IPCVAVYSTIDKDALHVKLADESVCIG----------EAPSSQSYL  130 (313)
Q Consensus        71 ~~~ILIig~g~~---------a~~v~~al~~~G-~~vi~v~~~~~~~~~~~~~ad~~~~v~----------~~~~~~~~~  130 (313)
                      ++||.|+.+|.+         |..++++|.+.| |+|+.++.+.+................          ........ 
T Consensus         1 Kk~Iavl~GG~S~EheVSl~Sa~~v~~~L~~~~~y~v~~i~i~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (132)
T d1ehia1           1 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDP-   79 (132)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCT-
T ss_pred             CCEEEEEeCcCcchhHHHHHHHHHHHHhhhccCceeEEEEEEcCCceEEcccchhhhhhcccccccccccccccccccc-
Confidence            367777776663         889999999886 899888766542211110000000000          00000000 


Q ss_pred             CHHHHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHH
Q 021372          131 LIPNVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRI  181 (313)
Q Consensus       131 ~~~~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~  181 (313)
                       ...+...-....+|+++|. +|...|+..+..+|+..++|+.|++..+...
T Consensus        80 -~~~~~~~~~~~~~Dvvf~~lHG~~GEDG~iQglle~~~iPy~G~~~~aSAl  130 (132)
T d1ehia1          80 -LARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGAPLRGHAV  130 (132)
T ss_dssp             -TCTTGGGGTTCCCSEEEEECCSTTTSSSHHHHHHHHTTCCBSSCCHHHHHH
T ss_pred             -ccchhhhhhccCCCEEEEccCCCCccchHHHHHHHHcCCCccCCCHHHHHh
Confidence             0001111123468999997 6899999999999999999999999887654

>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: PurP ATP-binding domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=97.23  E-value=2.8e-05  Score=62.73  Aligned_cols=93  Identities=12%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             HHHHHHHHCCCCCCCCCcccCCCHHHHHHHHHHhCCcEEEeeccCCCCccEEEeCCHHHHHHHHHHHHHHHHhcCCCCcE
Q 021372          187 TARETMKNAGVPTVPGSDGLLQSTEEAVKLADELGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV  266 (313)
Q Consensus       187 ~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~gg~GV~~v~~~~el~~~~~~~~~~~~~~~~~~~v  266 (313)
                      ..+++|+++|||.|+.+    + ++++     +..-|++||-....||+|-+++.+.++.+.....          ..++
T Consensus         2 l~~k~Le~AGip~Pk~~----~-Pedi-----~~d~~ViVK~~gAkggrGyFia~~~e~~~~~~~~----------~e~~   61 (213)
T d2pbza2           2 LQDKALEGAGIPRVEVV----E-PEDA-----KPDELYFVRIEGPRGGSGHFIVEGSELEERLSTL----------EEPY   61 (213)
T ss_dssp             HHHHHHHHHTCCBCCBC----C-SCCC-----CSSCCEEEECCC------------EECSCCCC--------------CC
T ss_pred             hhHHHHHhCCCCCCccc----C-cccc-----CCCceEEEEeccccCcceEEEEcCHHHHHhhhhc----------ccce
Confidence            45789999999999753    2 3332     2357999999888899999999886644332221          2578


Q ss_pred             EEeeccCCCcEEEEEEEEcC-CCCEEEEeeccchhhcccc
Q 021372          267 YLEKYVQNPRHIEFQVLADK-YGNVVHFGERDCSIQVIEI  305 (313)
Q Consensus       267 lvEe~I~G~~e~~v~v~~d~-~G~vv~~~~r~~s~~r~~~  305 (313)
                      .|||||-| ..+.+..|.+. .++ +-+    .++.||.+
T Consensus        62 ~IeEyv~G-~~~~~~yFySpi~~~-lEl----lg~DrR~~   95 (213)
T d2pbza2          62 RVERFIPG-VYLYVHFFYSPILER-LEL----LGVDERVL   95 (213)
T ss_dssp             EEEECCCS-CEEEEEEEEETTTTE-EEE----EEEEEEEE
T ss_pred             EEEEEecc-ceeeeeeeccccccc-eee----Eeeeeeee
Confidence            99999999 88888888877 444 444    24555553

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.20  E-value=0.00078  Score=49.41  Aligned_cols=90  Identities=13%  Similarity=0.028  Sum_probs=54.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..++|||+|+|.+|.+-++.|.+.|.+|+++++.........................+.            .+.+.|+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl------------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLL------------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGG------------TTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHh------------CCCcEEee
Confidence            368999999999999999999999999999976554333221111111112111111111            34677776


Q ss_pred             ccCcCcccHHHHHHHHHcCCce
Q 021372          150 GYGFLAENAVFVEMCREHGINF  171 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~  171 (313)
                      ..+....+..+.+.+++.|+++
T Consensus        79 at~d~~~n~~i~~~a~~~~ilV  100 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESRRIFC  100 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCHHHHHHHHHHHHHcCCEE
Confidence            5432222356667777888765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.99  E-value=0.00062  Score=51.29  Aligned_cols=72  Identities=18%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      |+++|+|.|..|+.+++.|.+.|++|++++.++.............++-+       ..+.+.+.+ +.-.+.|.++...
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd-------~~~~~~l~~-a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIAN-------ATEENELLS-LGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECC-------TTCTTHHHH-HTGGGCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeee-------cccchhhhc-cCCccccEEEEEc
Confidence            56899999999999999999999999999887765544444444444322       122223333 3334578777654

>d1e4ea1 c.30.1.2 (A:2-131) D-alanine:D-lactate ligase VanA, N-domain {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-alanine:D-lactate ligase VanA, N-domain
species: Enterococcus faecium [TaxId: 1352]

Probab=96.68  E-value=0.00012  Score=55.64  Aligned_cols=110  Identities=13%  Similarity=0.044  Sum_probs=65.7

Q ss_pred             ccEEEEEcCCHh---------HHHHHHHHHHcCCcEEEEecCCCcchhhh-----h---hcCceEEccCCCCCCCcCCHH
Q 021372           71 QEKILVANRGEI---------AVRVIRTAHEMGIPCVAVYSTIDKDALHV-----K---LADESVCIGEAPSSQSYLLIP  133 (313)
Q Consensus        71 ~~~ILIig~g~~---------a~~v~~al~~~G~~vi~v~~~~~~~~~~~-----~---~ad~~~~v~~~~~~~~~~~~~  133 (313)
                      ++||.|+.+|.+         |..++++|.+.+|+++.++-+.+......     .   .......+.+.........  
T Consensus         2 K~kV~vl~GG~S~EheVSl~Sa~~v~~~L~~~~y~v~~i~i~k~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (130)
T d1e4ea1           2 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLV--   79 (130)
T ss_dssp             CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEE--
T ss_pred             CcEEEEEeCCCchhhHHHHHHHHHHHHhhcccceeEEEEEecCCCcEEecccchhhhhcccccceeecCCcccccccc--
Confidence            356777776663         78899999999999998876554211000     0   0000011111100000000  


Q ss_pred             HHHHHHHhcCCCEEeec-cCcCcccHHHHHHHHHcCCceeCCCHHHHHHh
Q 021372          134 NVLSAAISRGCTMLHPG-YGFLAENAVFVEMCREHGINFIGPNPDSIRIM  182 (313)
Q Consensus       134 ~l~~~~~~~~id~vip~-~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~  182 (313)
                      ..........+|++||. +|...|+..+..+|+..++|+.|++..+..++
T Consensus        80 ~~~~~~~~~~~DvvF~~lHG~~GEDG~iQglle~~~iPy~Gsgv~aSai~  129 (130)
T d1e4ea1          80 KKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAIC  129 (130)
T ss_dssp             EETTEEEEEECSEEEECCCSTTTTSSHHHHHHHHHTCCBSSCCHHHHHHH
T ss_pred             cccccccccccCEEEEeccCCCccchHHHHHHHHcCCCccCCCHHHHHhh
Confidence            00000012358999998 68999999999999999999999998877654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.67  E-value=0.0047  Score=45.39  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             cEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcchhhh---hh------cCceEEccCCCCCCCcCCHHHHHHH
Q 021372           72 EKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALHV---KL------ADESVCIGEAPSSQSYLLIPNVLSA  138 (313)
Q Consensus        72 ~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~~~~---~~------ad~~~~v~~~~~~~~~~~~~~l~~~  138 (313)
                      |+|.|+|.+.    .|..+++.|.+.||+|+.+.+......-..   .+      .|-.+..-      +......+++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~v------p~~~~~~~l~~   75 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVV------PPKVGLQVAKE   75 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECS------CHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEe------CHHHHHHHHHH
Confidence            6899999554    489999999999999999965443221111   11      12111110      01234455555


Q ss_pred             HHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCC
Q 021372          139 AISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN  175 (313)
Q Consensus       139 ~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~  175 (313)
                      +.+.++..++...|.  +...+.+.+++.|+.++||+
T Consensus        76 ~~~~g~k~v~~~~g~--~~~~~~~~a~~~gi~vigpn  110 (116)
T d1y81a1          76 AVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSFGR  110 (116)
T ss_dssp             HHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEECSC
T ss_pred             HHhcCCceEEeccch--hhHHHHHHHHHcCCEEEcCC
Confidence            666778877655443  34467778888888888764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.56  E-value=0.0053  Score=46.66  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             ccEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcchh---hhhhc------CceEEccCCCCCCCcCCHHHHHH
Q 021372           71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLA------DESVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        71 ~~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~~---~~~~a------d~~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      .++|.|+|++.    .+..+++.+++.|++|+.+.+......-   +..+.      |-...+-      .......+++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~v------p~~~~~~~~~   92 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFV------KPKLTMEYVE   92 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECS------CHHHHHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEe------CHHHHHHHHH
Confidence            47899999665    5999999999999999999654332211   11111      1111110      1133556666


Q ss_pred             HHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCC
Q 021372          138 AAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPN  175 (313)
Q Consensus       138 ~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~  175 (313)
                      .+.+.++..++...|..  +....+.+++.|+.++|++
T Consensus        93 e~~~~g~k~v~~~~G~~--~ee~~~~a~~~gi~vig~~  128 (139)
T d2d59a1          93 QAIKKGAKVVWFQYNTY--NREASKKADEAGLIIVANR  128 (139)
T ss_dssp             HHHHHTCSEEEECTTCC--CHHHHHHHHHTTCEEEESC
T ss_pred             HHHHhCCCEEEEecccc--CHHHHHHHHHCCCEEEcCC
Confidence            66777888888765544  3466777888999988764

>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: Lysine biosynthesis enzyme LysX, N-terminal domain
domain: Lysine biosynthesis enzyme LysX, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.50  E-value=0.0023  Score=44.70  Aligned_cols=76  Identities=21%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccCcCcccHHHHH
Q 021372           83 AVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYGFLAENAVFVE  162 (313)
Q Consensus        83 a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~  162 (313)
                      -..++++++++|+++..++.....           +.++...  .+            -..+|+|+|-.........++.
T Consensus        13 Ek~L~~a~~~rG~~~~~id~~~~~-----------~~l~~~~--~~------------~~~~D~Vi~R~~s~~~~~~v~~   67 (88)
T d1uc8a1          13 ERMLFERAEALGLPYKKVYVPALP-----------MVLGERP--KE------------LEGVTVALERCVSQSRGLAAAR   67 (88)
T ss_dssp             HHHHHHHHHHHTCCEEEEEGGGCC-----------EETTBCC--GG------------GTTCCEEEECCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCeEEEEehhhcE-----------EEccCCC--Cc------------cCCCCEEEEeccccchHHHHHH
Confidence            567999999999999999643321           2222100  00            1348999997644434467889


Q ss_pred             HHHHcCCceeCCCHHHHHHhCC
Q 021372          163 MCREHGINFIGPNPDSIRIMGD  184 (313)
Q Consensus       163 ~l~~~gi~~~g~~~~~i~~~~D  184 (313)
                      .++.+|++++ |++++++.|.|
T Consensus        68 ~lE~~Gv~v~-Ns~~aI~~c~D   88 (88)
T d1uc8a1          68 YLTALGIPVV-NRPEVIEACGD   88 (88)
T ss_dssp             HHHHTTCCEE-SCHHHHHHHHB
T ss_pred             HHHHCCCcEe-ccHHHHHhhCC
Confidence            9999999999 99999998876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.43  E-value=0.0042  Score=49.06  Aligned_cols=76  Identities=13%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|.|++|...++.++.+|.. |++.+.+........++ ++..+..    ... ....+.+.......++|+++
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~----~~~-~~~~~~~~~~~~~~G~d~vi  103 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNP----REL-DKPVQDVITELTAGGVDYSL  103 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG----GGC-SSCHHHHHHHHHTSCBSEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCC----ccc-hhhhhhhHhhhhcCCCcEEE
Confidence            57899999999999999999999996 55565555555555555 3444321    111 12456677777778999999


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       104 e~~  106 (174)
T d1e3ia2         104 DCA  106 (174)
T ss_dssp             ESS
T ss_pred             Eec
Confidence            544

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0044  Score=43.33  Aligned_cols=88  Identities=9%  Similarity=0.016  Sum_probs=53.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      +||||+|+|..-..+++++++...+++++-.++  -.  ..++   -..          +.+.+.+++...++|.++++.
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~--G~--~~~~---~~~----------~~~~~~~~~~~~~idlviIGP   63 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA--GT--KRDG---TNH----------PYEGEKTLKAIPEEDIVIPGS   63 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT--TG--GGTS---EEC----------CCCTHHHHHTSCSSCEECCSS
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc--cc--cccc---eec----------cchhhHHHHHhccceeEEECh
Confidence            589999999888889999999888877653222  11  1111   111          123456678889999999876


Q ss_pred             CcCcccHHHHHHHHHcCCceeCCCHHHHHH
Q 021372          152 GFLAENAVFVEMCREHGINFIGPNPDSIRI  181 (313)
Q Consensus       152 g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~  181 (313)
                      ...-.. -+.+    ...+++||+.++..+
T Consensus        64 E~pL~~-Gi~D----~~~~vfGP~k~aA~l   88 (90)
T d1vkza2          64 EEFLVE-GVSN----WRSNVFGPVKEVARL   88 (90)
T ss_dssp             GGGTCC----------CTTBSSCCHHHHHH
T ss_pred             HHHHHH-HHHH----hCCcccCcCHHHHhc
Confidence            311111 2223    234589998877653

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.21  E-value=0.0081  Score=47.35  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|+|.|.|.+|...++.++.+|. +|++++.+.+.......+ +++.+.    +. +.....+.+.+.....++|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in----~~-~~~~~~~~~~~~~~g~G~d~vi  104 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECIS----PK-DSTKPISEVLSEMTGNNVGYTF  104 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEEC----GG-GCSSCHHHHHHHHHTSCCCEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEEC----cc-ccchHHHHHHHHhccccceEEE
Confidence            5679999999999999999999996 688898777776666666 444442    11 1122356677777778899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       105 ~~~  107 (176)
T d1d1ta2         105 EVI  107 (176)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0072  Score=47.94  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=32.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|+|+|+|+.|+..+..|.++|++|++++..+.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            68999999999999999999999999999976544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.12  E-value=0.0048  Score=48.09  Aligned_cols=76  Identities=14%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHh---cCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAIS---RGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~---~~id~  146 (313)
                      ..+|||+|.|++|+..++.++.+|.+|++++.++........+ ++..+..+  ..   ..+.+.+.+..++   .++|.
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~--~~---~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVD--PA---KEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECC--TT---TSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEecc--cc---ccccchhhhhhhcccccCCce
Confidence            5689999999999999999999999999997766555444443 34444332  11   1234444444443   46899


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      ++-..
T Consensus       102 vid~~  106 (170)
T d1e3ja2         102 TIDCS  106 (170)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            98543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.10  E-value=0.011  Score=51.39  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=48.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .|||||+| +|.+|..+++.|.+.|++|++++...............+...+       ..+.+.+.+..  .++|.|+-
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D-------~~~~~~~~~~~--~~~d~Vih   85 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVD-------LRVMENCLKVT--EGVDHVFN   85 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECC-------TTSHHHHHHHH--TTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEee-------chhHHHHHHHh--hcCCeEee
Confidence            56799999 7779999999999999999998754433222222223334332       45667777765  46888774


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      .
T Consensus        86 ~   86 (363)
T d2c5aa1          86 L   86 (363)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0023  Score=50.79  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCc-CCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSY-LLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~-~~~~~l~~~~~~~~id~v  147 (313)
                      ..+|||+|+|++|...++.++.+|. +|++++.++.......++ ++..+..    ..++. ...+++.+.....++|.|
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~----~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNR----RETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEET----TTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEec----cccchHHHHHHHHHhhCCCCceEE
Confidence            5789999999999999999999998 578887666555544444 3444422    11111 113334444445678999


Q ss_pred             eeccC
Q 021372          148 HPGYG  152 (313)
Q Consensus       148 ip~~g  152 (313)
                      +-..|
T Consensus       105 id~vG  109 (182)
T d1vj0a2         105 LEATG  109 (182)
T ss_dssp             EECSS
T ss_pred             eecCC
Confidence            86544

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.014  Score=50.32  Aligned_cols=73  Identities=8%  Similarity=0.030  Sum_probs=48.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc----chhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK----DALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~----~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      |||||+| +|.+|..+++.|.+.|++|++++.....    ......+. +....+.     .+..+.+.+.++++..++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~Dl~d~~~l~~~~~~~~~d   75 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVE-----GDIRNEALMTEILHDHAID   75 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEE-----CCTTCHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEE-----eecCCHHHHHHHHhccCCC
Confidence            4699999 7779999999999999999998632111    11111111 2221121     1246678899999989999


Q ss_pred             EEee
Q 021372          146 MLHP  149 (313)
Q Consensus       146 ~vip  149 (313)
                      .|+-
T Consensus        76 ~ViH   79 (338)
T d1udca_          76 TVIH   79 (338)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9884

>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: PurP N-terminal domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=95.82  E-value=0.02  Score=41.81  Aligned_cols=98  Identities=10%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC-CcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI-DKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~-~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      +.-+|.++|+. +++++++-|++.|++++++.... ...-.....+|+.+.++.   -.+..+ +.+.+..++.  ++|+
T Consensus        17 ~~i~I~t~~SH-SALqIl~GAk~EGF~Tv~ic~kgR~~~Y~~f~~~De~i~~d~---f~di~~-~~~qe~L~~~--N~I~   89 (123)
T d2r7ka1          17 DEITIATLGSH-TSLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDN---FSDIKN-EEIQEKLREL--NSIV   89 (123)
T ss_dssp             TSCEEEEESST-THHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSS---GGGGGS-HHHHHHHHHT--TEEE
T ss_pred             cccEEEEEecc-hHHHHhhhHHHcCCcEEEEecCCCcchhhhccccceEEEecc---HHHHhh-HHHHHHHHHC--CEEE
Confidence            35678889876 58999999999999999987432 222233456889887741   112222 2455555543  6777


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeCC
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      ..++++.+.......-.+..+|++|+
T Consensus        90 IPhgSfv~Y~G~~~ie~~~~VP~FGn  115 (123)
T d2r7ka1          90 VPHGSFIAYCGLDNVENSFLVPMFGN  115 (123)
T ss_dssp             CCBHHHHHHHCHHHHHHTCCSCBBSC
T ss_pred             ecCCCeeeeecHHHHHhcCCCCeecC
Confidence            66655544433333323578899875

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.81  E-value=0.016  Score=44.77  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|+|||+|+|.+|..+++.|.+.|++|++++.+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            48899999999999999999999999999976554

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0047  Score=45.76  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..++++|+|+|.+|..++..++++|.+|.++..+  ...   +..|.             .-.+.+.+..++.+++...
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~--~~l---~~~D~-------------~~~~~l~~~l~~~Gv~i~~   79 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS--ILL---RGFDQ-------------DMANKIGEHMEEHGIKFIR   79 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS--SSS---TTSCH-------------HHHHHHHHHHHHTTEEEEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec--hhh---ccCCH-------------HHHHHHHHHHHHCCCEEEE
Confidence            3578999999999999999999999999999532  111   11121             1245667777777777654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0074  Score=44.58  Aligned_cols=34  Identities=12%  Similarity=0.149  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++++|+|+|.+|..++..+.++|.+|.++...
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~   55 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ   55 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEec
Confidence            4589999999999999999999999999999643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.64  E-value=0.0073  Score=44.11  Aligned_cols=34  Identities=12%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|+|.+|..++..+.++|.+|+++...
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~   54 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGA   54 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEec
Confidence            3589999999999999999999999999999643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.013  Score=45.65  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|++|...+..++.+|. +|++++.++.......++ ++..+..    ..++.......+..-...++|.++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~----~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI----SKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC----SSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc----cccccccccccccccCCCCceEEE
Confidence            5689999999999999999999999 588887666555554454 3444422    112221222223333445789998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       103 d~~  105 (171)
T d1pl8a2         103 ECT  105 (171)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.63  E-value=0.044  Score=41.48  Aligned_cols=39  Identities=15%  Similarity=0.162  Sum_probs=33.7

Q ss_pred             ccccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           67 VTCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        67 ~~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+.++||+|+| .|.+|..+++.|++.||+|.+++.+..
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            345589999999 699999999999999999999976544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.56  E-value=0.008  Score=43.79  Aligned_cols=33  Identities=15%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++++|+|+|.+|..++..++++|.+|.++...
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            578999999999999999999999999999643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.51  E-value=0.01  Score=43.53  Aligned_cols=38  Identities=13%  Similarity=0.108  Sum_probs=32.6

Q ss_pred             cccccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           66 KVTCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        66 ~~~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+...++++|+|+|.+|..++..++++|.+|.++...
T Consensus        17 ~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          17 DFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             SCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEee
Confidence            33445689999999999999999999999999999643

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.50  E-value=0.037  Score=41.06  Aligned_cols=92  Identities=11%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||.|.| .|..|+.+.+.+.+.|++++...+.....  ...-+|..+.+    +  .+.....+++.|.++++.+|+.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~--~~~~~DVvIDF----S--~p~~~~~~l~~~~~~~~p~ViGT   72 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE--ELDSPDVVIDF----S--SPEALPKTVDLCKKYRAGLVLGT   72 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE--ECSCCSEEEEC----S--CGGGHHHHHHHHHHHTCEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH--HhccCCEEEEe----c--CHHHHHHHHHHHHhcCCCEEEEc
Confidence            4699999 59999999999999999987653222211  12234544322    1  12446788899999999999988


Q ss_pred             cCcCcccHHHHHHHHHcCCcee
Q 021372          151 YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      .|+..+.....+.+ ...++++
T Consensus        73 TG~~~~~~~~i~~~-ak~~pv~   93 (128)
T d1vm6a3          73 TALKEEHLQMLREL-SKEVPVV   93 (128)
T ss_dssp             CSCCHHHHHHHHHH-TTTSEEE
T ss_pred             CCCCHHHHHHHHHH-HhhCCEE
Confidence            77555543333333 2356654

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.47  E-value=0.021  Score=41.94  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .++|+|+|+|.+|..++.+++++|.+|.++...+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            4789999999999999999999999999997543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.45  E-value=0.012  Score=48.88  Aligned_cols=57  Identities=9%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             cEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |||||+|+ |.+|..+++.|.+.|++|+.++...               +       +..+.+.+.++++..++|.|+-.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------~-------D~~d~~~~~~~l~~~~~d~vih~   59 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------L-------DITNVLAVNKFFNEKKPNVVINC   59 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------C-------CTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------c-------cCCCHHHHHHHHHHcCCCEEEee
Confidence            56999995 8899999999999999998874221               1       13456778888888889988854

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0066  Score=48.67  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=34.1

Q ss_pred             cccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           68 TCRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        68 ~~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++|.+||.|+|+|.+|..++..+...|++|++++.+++
T Consensus         1 ~~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           1 KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            46789999999999999999999999999999976554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.36  E-value=0.038  Score=41.05  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             ccEEEEEcCCH----hHHHHHHHHHHcC-CcEEEEecCCCcchh---hhhh------cCceEEccCCCCCCCcCCHHHHH
Q 021372           71 QEKILVANRGE----IAVRVIRTAHEMG-IPCVAVYSTIDKDAL---HVKL------ADESVCIGEAPSSQSYLLIPNVL  136 (313)
Q Consensus        71 ~~~ILIig~g~----~a~~v~~al~~~G-~~vi~v~~~~~~~~~---~~~~------ad~~~~v~~~~~~~~~~~~~~l~  136 (313)
                      .++|.|+|++.    .+..+++.|++.| .+|+.+.+......-   +..+      .|-.+..-      +......++
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~v------p~~~~~~~~   81 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVV------PKRFVKDTL   81 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECS------CHHHHHHHH
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEec------ChHHhHHHH
Confidence            47899999654    5888999998876 689999655432211   1111      12222111      113355666


Q ss_pred             HHHHhcCCCEEeeccCcCccc--------HHHHHHHHHcCCceeCCC
Q 021372          137 SAAISRGCTMLHPGYGFLAEN--------AVFVEMCREHGINFIGPN  175 (313)
Q Consensus       137 ~~~~~~~id~vip~~g~~~e~--------~~~~~~l~~~gi~~~g~~  175 (313)
                      +.+.+.++..++...+-+.|.        ..+.+..++.|++++||+
T Consensus        82 ~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~GPN  128 (129)
T d2csua1          82 IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPN  128 (129)
T ss_dssp             HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSS
T ss_pred             HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeCCC
Confidence            777778888655433222221        235566778899999885

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.35  E-value=0.027  Score=48.18  Aligned_cols=76  Identities=4%  Similarity=-0.116  Sum_probs=48.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh---h------hhcCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH---V------KLADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~---~------~~ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      +|++||+| +|.+|.++++.|.+.|++|+.++...+.....   .      ......+.+    ...+..+.+.+....+
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Di~~~~~~~~~~~   76 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKL----HYADLTDASSLRRWID   76 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEE----EECCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEE----EEccccCHHHHHHHHh
Confidence            47899999 77799999999999999999997533211100   0      000010100    0112456778888888


Q ss_pred             hcCCCEEeec
Q 021372          141 SRGCTMLHPG  150 (313)
Q Consensus       141 ~~~id~vip~  150 (313)
                      ..++|.|+-.
T Consensus        77 ~~~~D~Vih~   86 (339)
T d1n7ha_          77 VIKPDEVYNL   86 (339)
T ss_dssp             HHCCSEEEEC
T ss_pred             hhccchhhhc
Confidence            8899988754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.025  Score=48.69  Aligned_cols=72  Identities=17%  Similarity=0.037  Sum_probs=48.5

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcc-------hhhh---hhcC---ceEEccCCCCCCCcCCHHHH
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKD-------ALHV---KLAD---ESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~-------~~~~---~~ad---~~~~v~~~~~~~~~~~~~~l  135 (313)
                      |.|||||+| .|.+|..+++.|-+.|++|++++......       ....   .+.+   .++..       +..+.+.+
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------Dl~d~~~l   73 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM-------DILDQGAL   73 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEEC-------CTTCHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEe-------eccccccc
Confidence            568999999 77799999999999999999986311110       0000   1111   12222       35678888


Q ss_pred             HHHHHhcCCCEEe
Q 021372          136 LSAAISRGCTMLH  148 (313)
Q Consensus       136 ~~~~~~~~id~vi  148 (313)
                      .++.....++.++
T Consensus        74 ~~~~~~~~~~~i~   86 (346)
T d1ek6a_          74 QRLFKKYSFMAVI   86 (346)
T ss_dssp             HHHHHHCCEEEEE
T ss_pred             ccccccccccccc
Confidence            8988888877765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.33  E-value=0.024  Score=45.38  Aligned_cols=71  Identities=14%  Similarity=-0.037  Sum_probs=45.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      |++|||+| .|.+|..+++.|.+.|+++.+++...+.......... +.+..       +..+.+.+.++.+  ++|.|+
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~-------d~~~~~~~~~~~~--~~d~vi   73 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIG-------DITDADSINPAFQ--GIDALV   73 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEEC-------CTTSHHHHHHHHT--TCSEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEe-------eeccccccccccc--cceeeE
Confidence            78999999 6789999999999999887665433332221111111 22322       2455667776664  588887


Q ss_pred             ec
Q 021372          149 PG  150 (313)
Q Consensus       149 p~  150 (313)
                      ..
T Consensus        74 ~~   75 (252)
T d2q46a1          74 IL   75 (252)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.30  E-value=0.026  Score=43.79  Aligned_cols=76  Identities=20%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|+|+|+|..+...+..++..|-. |++++.++........+ +|+.+..    . ++....+.+.+.....++|.++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~----~-~~~~~~~~~~~~~~~~G~d~vi  103 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNP----N-DHSEPISQVLSKMTNGGVDFSL  103 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECG----G-GCSSCHHHHHHHHHTSCBSEEE
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcC----C-CcchhHHHHHHhhccCCcceee
Confidence            67899999999998888888888775 66776666555555555 5555522    1 1122356777777778899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       104 d~~  106 (175)
T d1cdoa2         104 ECV  106 (175)
T ss_dssp             ECS
T ss_pred             eec
Confidence            544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.26  E-value=0.027  Score=46.70  Aligned_cols=76  Identities=8%  Similarity=-0.004  Sum_probs=49.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~v  147 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.+............+.+|    ..+..+++.+++.+.+.  ++|.+
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~D----v~~~~~v~~~~~~~~~~~G~iDiL   80 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVD----LEDERERVRFVEEAAYALGRVDVL   80 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECC----TTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEe----CCCHHHHHHHHHHHHHhcCCCCeE
Confidence            58899999 5568999999999999999999866554333333333444432    12233455555544432  69988


Q ss_pred             eec
Q 021372          148 HPG  150 (313)
Q Consensus       148 ip~  150 (313)
                      +..
T Consensus        81 Vnn   83 (248)
T d2d1ya1          81 VNN   83 (248)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            854

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.015  Score=45.35  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+ |.+|...++.++.+|.+|+++...+........+ +|+.+.    ..+.  ...+.+.+.....++|+++
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~----~~~~--~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFN----HREV--NYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEE----TTST--THHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccc----cccc--cHHHHhhhhhccCCceEEe
Confidence            568999995 9999999999999999999887554333322222 344442    1222  2356677776677899988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       103 d~~  105 (174)
T d1yb5a2         103 EML  105 (174)
T ss_dssp             ESC
T ss_pred             ecc
Confidence            543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.22  E-value=0.02  Score=44.84  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|.|++|...++.++.+|.. |++++.+.........+-...+ ++  +...+ ...+.+.......++|.++-
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~-i~--~~~~d-~~~~~~~~~~~~~G~d~vid  103 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATEC-LN--PKDYD-KPIYEVICEKTNGGVDYAVE  103 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEE-EC--GGGCS-SCHHHHHHHHTTSCBSEEEE
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEE-Ec--CCCch-hHHHHHHHHhcCCCCcEEEE
Confidence            67899999999999999999999974 6667665555555555543333 22  11111 22556666655668999884


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      .
T Consensus       104 ~  104 (174)
T d1p0fa2         104 C  104 (174)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.014  Score=50.54  Aligned_cols=71  Identities=13%  Similarity=0.022  Sum_probs=48.5

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh----hhhhcC---ceEEccCCCCCCCcCCHHHHHHHHHhcC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL----HVKLAD---ESVCIGEAPSSQSYLLIPNVLSAAISRG  143 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~----~~~~ad---~~~~v~~~~~~~~~~~~~~l~~~~~~~~  143 (313)
                      |.|||+| +|.+|..+++.|.+.|++|++++........    .....+   +++..       +..+.+.+..+....+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~-------Dl~d~~~l~~~~~~~~   74 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV-------DLCDRKGLEKVFKEYK   74 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEEC-------CTTCHHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEe-------ecCCHHHHHHHHhccC
Confidence            4699999 6779999999999999999998632221111    111111   22222       2467888888888889


Q ss_pred             CCEEee
Q 021372          144 CTMLHP  149 (313)
Q Consensus       144 id~vip  149 (313)
                      +|.|+-
T Consensus        75 ~d~Vih   80 (347)
T d1z45a2          75 IDSVIH   80 (347)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            999984

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.19  E-value=0.011  Score=48.63  Aligned_cols=34  Identities=9%  Similarity=0.105  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..+||+|+|+|+.|+..+..|++.|++|++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            3688999999999999999999999999999643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.18  E-value=0.011  Score=46.46  Aligned_cols=35  Identities=11%  Similarity=0.100  Sum_probs=30.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~  105 (313)
                      .+||+|+|+|+.|+..+..|+++|++ |++++..+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            68999999999999999999999995 888865443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.17  E-value=0.039  Score=47.46  Aligned_cols=75  Identities=11%  Similarity=-0.035  Sum_probs=51.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh---hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH---VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~---~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .|||||+| +|.+|..+++.|.+.|++|++++.........   .+..+....+     ..+..+.+.+.++.+...+|.
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~-----~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSE-----IGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEE-----ECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEE-----EeeccChHhhhhhhhhchhhh
Confidence            48999999 67799999999999999999987544322211   1112211111     112456788999999899998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      |+..
T Consensus        83 v~~~   86 (356)
T d1rkxa_          83 VFHM   86 (356)
T ss_dssp             EEEC
T ss_pred             hhhh
Confidence            8754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.16  E-value=0.023  Score=42.37  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|+|+|+|.+|.+++..++++|++|.++...
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeec
Confidence            478999999999999999999999999999644

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.12  E-value=0.0083  Score=50.48  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |+.+|+|+|+|+.|+.++..|++.|++|++++..
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4568999999999999999999999999999643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.12  E-value=0.021  Score=44.40  Aligned_cols=76  Identities=20%  Similarity=0.100  Sum_probs=49.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEE-EecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVA-VYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~-v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+|..+...++.++.+|..+++ +++++........+ +++.+..     .+...+....+......++|.++
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~-----~~~~~~~~~~~~~~~~~g~D~vi  103 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINP-----QDFSKPIQEVLIEMTDGGVDYSF  103 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECG-----GGCSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeC-----CchhhHHHHHHHHHcCCCCcEee
Confidence            57899999999999999999999976554 44444444444444 3444421     11123455666666667899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       104 d~~  106 (176)
T d2fzwa2         104 ECI  106 (176)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.014  Score=42.55  Aligned_cols=61  Identities=13%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|+|+|+|.+|..++..++++|.+|.++...+...    ...|             ....+.+.+..++++++...
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l----~~~d-------------~~~~~~~~~~l~~~GV~~~~   81 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL----PSFD-------------PMISETLVEVMNAEGPQLHT   81 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS----TTSC-------------HHHHHHHHHHHHHHSCEEEC
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh----hhcc-------------hhhHHHHHHHHHHCCCEEEe
Confidence            4789999999999999999999999999996433211    0011             12245667777777777654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.07  E-value=0.0076  Score=47.41  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=51.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|++|...++.++.+|. +|++++.+.........+ +++.+..    ..+  ...+.+.++-...++|+++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~----~~~--~~~~~v~~~t~g~G~D~vi  101 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY----KNG--HIEDQVMKLTNGKGVDRVI  101 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG----GGS--CHHHHHHHHTTTSCEEEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc----cch--hHHHHHHHHhhccCcceEE
Confidence            5679999999999999999999998 688886655544444444 3444421    111  2245666665567799998


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       102 d~~g  105 (174)
T d1jqba2         102 MAGG  105 (174)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            6543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.019  Score=48.12  Aligned_cols=34  Identities=12%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +..||+|||+|..|+..+..|.+.|++|+++...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3678999999999999999999999999999654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.02  E-value=0.014  Score=47.48  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .+||+|||+|..|+..+..|.++|++|.+++.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            578999999999999999999999999999754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.045  Score=41.50  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=48.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh--hhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV--KLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~--~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +.+|+|+|.|..|..+++.|.+.|+++++++.+++......  .... ..+..+      +..+.+.+ +.+.-...+++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~G------d~~d~~~L-~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPG------DSNDSSVL-KKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEES------CTTSHHHH-HHHTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEc------cCcchHHH-HHhccccCCEE
Confidence            46799999999999999999999999999987765322111  1122 222222      23444444 44444568888


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +...
T Consensus        76 i~~~   79 (153)
T d1id1a_          76 LALS   79 (153)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            8654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.00  E-value=0.018  Score=42.38  Aligned_cols=33  Identities=12%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|+|+|+|.+|..++.++.++|.+|+++...
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~   62 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL   62 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence            578999999999999999999999999999654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.93  E-value=0.013  Score=43.27  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=44.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..++++|+|+|.+|+.++..++++|.+|.++...+....    ..|             ..-.+.+.+..++.+++...
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~----~~d-------------~~~~~~l~~~l~~~GI~i~~   85 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP----TMD-------------AEIRKQFQRSLEKQGMKFKL   85 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST----TSC-------------HHHHHHHHHHHHHSSCCEEC
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc----hhh-------------hcchhhhhhhhhcccceEEc
Confidence            458999999999999999999999999999964432110    111             12245666777777777664

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.93  E-value=0.053  Score=42.11  Aligned_cols=70  Identities=10%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .-+|+|+|+|-.|+..++.++++|..|.++|.+....... ..+.......        +.+.+.+.+.+++  .|+|+.
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~--------~~~~~~l~~~~~~--aDivI~  101 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL--------YSNSAEIETAVAE--ADLLIG  101 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE--------ECCHHHHHHHHHT--CSEEEE
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee--------hhhhhhHHHhhcc--CcEEEE
Confidence            5789999999999999999999999999998765543221 1222222222        2445667776654  788886


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      +
T Consensus       102 a  102 (168)
T d1pjca1         102 A  102 (168)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=94.92  E-value=0.014  Score=43.99  Aligned_cols=96  Identities=18%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             ccEEEEEcCCH----hHHHHHHHHHHcCCcEEEEecCCCcchhh-----hhh------cCceEEccCCCCCCCcCCHHHH
Q 021372           71 QEKILVANRGE----IAVRVIRTAHEMGIPCVAVYSTIDKDALH-----VKL------ADESVCIGEAPSSQSYLLIPNV  135 (313)
Q Consensus        71 ~~~ILIig~g~----~a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~~~------ad~~~~v~~~~~~~~~~~~~~l  135 (313)
                      .++|.|+|++.    .|..+++.|++.|++++.+...+......     ..+      .|-...+-+      ......+
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p------~~~v~~~   86 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP------PSALMDH   86 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC------HHHHTTT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc------HHHHHHH
Confidence            47899999665    48999999999999999986543211100     000      111111000      1112233


Q ss_pred             HHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCC
Q 021372          136 LSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       136 ~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      ++.+.+.++..++...|..  +..+.+.+++.|+.++++
T Consensus        87 v~~~~~~g~k~i~~q~G~~--~~e~~~~a~~~Gi~vV~~  123 (136)
T d1iuka_          87 LPEVLALRPGLVWLQSGIR--HPEFEKALKEAGIPVVAD  123 (136)
T ss_dssp             HHHHHHHCCSCEEECTTCC--CHHHHHHHHHTTCCEEES
T ss_pred             HHHHHhhCCCeEEEecCcc--CHHHHHHHHHcCCEEEcC
Confidence            4444455677666554433  345666777777777654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.92  E-value=0.031  Score=49.09  Aligned_cols=71  Identities=10%  Similarity=-0.018  Sum_probs=47.7

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC--------------cchhh------hhhcC---ceEEccCCCCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID--------------KDALH------VKLAD---ESVCIGEAPSSQ  127 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~--------------~~~~~------~~~ad---~~~~v~~~~~~~  127 (313)
                      |||||+| +|.+|..+++.|.+.|++|+++|.-..              .....      ....+   +++..       
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------   74 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVG-------   74 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEES-------
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEc-------
Confidence            7899999 777999999999999999999962100              00000      00111   12211       


Q ss_pred             CcCCHHHHHHHHHhcCCCEEee
Q 021372          128 SYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus       128 ~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +..+.+.+.++++..++|.|+-
T Consensus        75 Dl~d~~~l~~~~~~~~~d~ViH   96 (393)
T d1i24a_          75 DICDFEFLAESFKSFEPDSVVH   96 (393)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEE
T ss_pred             cCCCHHHHHHHHHhhcchheec
Confidence            3456788888888889998874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.89  E-value=0.014  Score=49.21  Aligned_cols=34  Identities=6%  Similarity=0.127  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+||+|||+|..|+..+..|.+.|++|++++...
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5799999999999999999999999999997543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.88  E-value=0.016  Score=42.50  Aligned_cols=33  Identities=12%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++++|+|+|.+|..++.+|.++|.+|+++...
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecc
Confidence            478999999999999999999999999999643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.86  E-value=0.012  Score=48.65  Aligned_cols=33  Identities=9%  Similarity=0.086  Sum_probs=30.2

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |||+|||+|..|+..+..|++.|++|++++..+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            789999999999999999999999999997543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.83  E-value=0.12  Score=35.99  Aligned_cols=88  Identities=15%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             cccEEEEEcCCHhHH-HHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           70 RQEKILVANRGEIAV-RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        70 ~~~~ILIig~g~~a~-~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..++|-++|-|.+|. .+++.|+++|++|...|....+.........-.+..+..        .+.+      .+.|.|+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~--------~~~i------~~~d~vV   72 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHA--------EEHI------EGASVVV   72 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCC--------GGGG------TTCSEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCc--------cccC------CCCCEEE
Confidence            378999999666664 468999999999998875544443332222222323211        1111      2478888


Q ss_pred             eccCcCcccHHHHHHHHHcCCcee
Q 021372          149 PGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      -+.+...++..+.+ +.+.|++++
T Consensus        73 ~S~AI~~~npel~~-A~~~gipii   95 (96)
T d1p3da1          73 VSSAIKDDNPELVT-SKQKRIPVI   95 (96)
T ss_dssp             ECTTSCTTCHHHHH-HHHTTCCEE
T ss_pred             ECCCcCCCCHHHHH-HHHcCCCEE
Confidence            77654445555544 457788864

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.81  E-value=0.058  Score=46.92  Aligned_cols=74  Identities=12%  Similarity=-0.007  Sum_probs=45.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEE-EecCCCcchh--hhhh--cCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVA-VYSTIDKDAL--HVKL--ADESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~-v~~~~~~~~~--~~~~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      |||||+| +|.+|..+++.|.+.|+++++ ++........  ...+  .+....+     ..+..+.+.+.++.+..++|
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~Dl~d~~~l~~~~~~~~~d   75 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFE-----HADICDSAEITRIFEQYQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEE-----ECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEE-----EccCCCHHHHHHHHHhCCCC
Confidence            3799999 677999999999999998654 4322111110  0000  0111111     11245677888888888999


Q ss_pred             EEeec
Q 021372          146 MLHPG  150 (313)
Q Consensus       146 ~vip~  150 (313)
                      +|+-.
T Consensus        76 ~Vihl   80 (361)
T d1kewa_          76 AVMHL   80 (361)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99853

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.80  E-value=0.038  Score=42.95  Aligned_cols=77  Identities=21%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+|..+...+..++..|. +|++++.+.........+. ++.+..   .+  .....+.+.+.....++|+++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~---~~--~~~~~~~~~~~~~~~G~D~vi  103 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNP---QD--YKKPIQEVLTEMSNGGVDFSF  103 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECG---GG--CSSCHHHHHHHHTTSCBSEEE
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEec---CC--chhHHHHHHHHHhcCCCCEEE
Confidence            5789999999999999999999986 6666665555555444443 333311   11  113466777777778899998


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..+
T Consensus       104 d~~G  107 (176)
T d2jhfa2         104 EVIG  107 (176)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            5543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.79  E-value=0.017  Score=42.23  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|+|+|+|.+|..++..++++|.+|+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeeh
Confidence            47899999999999999999999999999964

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.77  E-value=0.031  Score=47.45  Aligned_cols=71  Identities=17%  Similarity=0.036  Sum_probs=48.1

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-----hhhcC-ceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----VKLAD-ESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~~~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      ||||+| .|.+|..+++.|.+.|++|++++.-.......     ..... +++..       +..+.+.+.++.+..++|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~-------Di~~~~~l~~~~~~~~~d   74 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHG-------DIRNKNDVTRLITKYMPD   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEEC-------CTTCHHHHHHHHHHHCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEc-------ccCCHHHHHHHHHhcCCc
Confidence            799999 77799999999999999999986321111110     01111 22222       246678888888888999


Q ss_pred             EEeec
Q 021372          146 MLHPG  150 (313)
Q Consensus       146 ~vip~  150 (313)
                      .|+-.
T Consensus        75 ~Vih~   79 (338)
T d1orra_          75 SCFHL   79 (338)
T ss_dssp             EEEEC
T ss_pred             eEEee
Confidence            99754

>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: PurP N-terminal domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.68  E-value=0.085  Score=36.85  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh--hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK--LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~--~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      |+-+|.++|+. +++++++-|++.|++++++...... ..+.+  ..++.+.++      .+. .+.+.+      -++|
T Consensus         1 m~i~I~tl~SH-SALqI~~GAK~EGF~Tv~vc~~~r~-~~Y~~~f~v~d~~i~~------~~~-~e~L~~------~N~I   65 (99)
T d2r85a1           1 MKVRIATYASH-SALQILKGAKDEGFETIAFGSSKVK-PLYTKYFPVADYFIEE------KYP-EEELLN------LNAV   65 (99)
T ss_dssp             CCSEEEEESST-THHHHHHHHHHTTCCEEEESCGGGH-HHHHTTSCCCSEEECS------SCC-HHHHHH------TTEE
T ss_pred             CceEEEEEech-hHHHHhccHHHcCCcEEEEEcCCCC-cchhhhhhhcceeeee------hHH-HHHHHH------CCEE
Confidence            45678899876 5899999999999999998644322 22222  233344232      121 233332      3677


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      +..++++.+.... +.+++..+|++|+
T Consensus        66 ~IPhgSfv~Y~G~-d~ie~~~VP~FGn   91 (99)
T d2r85a1          66 VVPTGSFVAHLGI-ELVENMKVPYFGN   91 (99)
T ss_dssp             ECCCTTHHHHHCH-HHHHTCCSCBBSC
T ss_pred             EecCCCEEEEEcH-HHHhcCCCCcccC
Confidence            7766665554333 4456788888875

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.61  E-value=0.041  Score=45.38  Aligned_cols=76  Identities=9%  Similarity=0.006  Sum_probs=47.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+....... ..+..+.+.+|    ..+..+++.+++.+.+.  ++|.
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~D----v~~~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMD----VADPASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECC----TTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEe----cCCHHHHHHHHHHHHHhcCCceE
Confidence            58899999 45589999999999999999987554322211 11223334332    12233455555554432  6998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        81 lVnn   84 (242)
T d1ulsa_          81 VVHY   84 (242)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8854

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.023  Score=41.94  Aligned_cols=32  Identities=16%  Similarity=0.227  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|+|+|+|.+|+.++..++++|.+|+++..
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~   53 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIR   53 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEee
Confidence            47899999999999999999999999999964

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.054  Score=46.35  Aligned_cols=73  Identities=7%  Similarity=-0.092  Sum_probs=49.1

Q ss_pred             cEE-EEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh---hhhhc-------C--ceEEccCCCCCCCcCCHHHHHH
Q 021372           72 EKI-LVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLA-------D--ESVCIGEAPSSQSYLLIPNVLS  137 (313)
Q Consensus        72 ~~I-LIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~---~~~~a-------d--~~~~v~~~~~~~~~~~~~~l~~  137 (313)
                      ||| ||+| .|.+|..+++.|.+.|++|++++..+.....   .....       .  +++.       .+..+.+.+.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Dl~d~~~~~~   73 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY-------GDLTDSTCLVK   73 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEE-------CCTTCHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEE-------eecCCchhhHH
Confidence            578 9999 6679999999999999999999754332110   00000       0  1111       12457788889


Q ss_pred             HHHhcCCCEEeecc
Q 021372          138 AAISRGCTMLHPGY  151 (313)
Q Consensus       138 ~~~~~~id~vip~~  151 (313)
                      +..+.+++.++...
T Consensus        74 ~~~~~~~~~v~~~~   87 (347)
T d1t2aa_          74 IINEVKPTEIYNLG   87 (347)
T ss_dssp             HHHHHCCSEEEECC
T ss_pred             HHhhcccceeeeee
Confidence            99888988887553

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.45  E-value=0.025  Score=41.83  Aligned_cols=33  Identities=18%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ..++++|+|+|.+|..++..++++|.+|+++..
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~   57 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEM   57 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEe
Confidence            358899999999999999999999999999954

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.43  E-value=0.027  Score=45.98  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=31.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|+|+|+|+.|+..+..|+++|++|++++...
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            47899999999999999999999999999996544

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.035  Score=46.96  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +|||||+| +|.+|..+++.|.+.|+.+++++....              +       +..+.+.+.++.....+|.|+-
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~-------~~~~~~~~~~~~~~~~~d~v~~   60 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------L-------NLLDSRAVHDFFASERIDQVYL   60 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------C-------CTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------c-------cccCHHHHHHHHhhcCCCEEEE
Confidence            57999999 777999999999999999887642211              1       1345677878888888998885


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      .
T Consensus        61 ~   61 (315)
T d1e6ua_          61 A   61 (315)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.05  Score=45.06  Aligned_cols=78  Identities=12%  Similarity=0.022  Sum_probs=47.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh--cCCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS--RGCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~--~~id~v  147 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.+..............+.  -+..+..+++.+.+.+.+  -++|.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~--~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFIL--CDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEE--CCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEE--ccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            68899999 5568999999999999999998754432221111112222221  112223445566555543  269988


Q ss_pred             eec
Q 021372          148 HPG  150 (313)
Q Consensus       148 ip~  150 (313)
                      +..
T Consensus        84 Vnn   86 (250)
T d1ydea1          84 VNN   86 (250)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.11  E-value=0.027  Score=43.91  Aligned_cols=74  Identities=11%  Similarity=0.144  Sum_probs=46.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEe-cCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY-STIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~-~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||+|+|.+|...++.++.+|.+++++. .++.......++ +++.+..    ..++  ..+.+.++. ..++|.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~----~~~~--~~~~i~~~t-~gg~D~vi  101 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS----KTQD--PVAAIKEIT-DGGVNFAL  101 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET----TTSC--HHHHHHHHT-TSCEEEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC----CCcC--HHHHHHHHc-CCCCcEEE
Confidence            6789999999999999999999999876654 333333433444 3444421    1122  244555543 34789988


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       102 d~~  104 (174)
T d1f8fa2         102 EST  104 (174)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.09  E-value=0.025  Score=48.59  Aligned_cols=35  Identities=20%  Similarity=0.163  Sum_probs=31.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|||+|+|+|..|+..+..|.+.|++|.++.....
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999999999999999999999999999976544

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.07  E-value=0.35  Score=33.09  Aligned_cols=86  Identities=10%  Similarity=-0.007  Sum_probs=52.6

Q ss_pred             cEEEEEcCCHhHH-HHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAV-RVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~-~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      +||-++|-|.+|. .+++.|+++|+.|..-|..............-.++.+.  +.   .+   +      .++|.|+.+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh--~~---~~---i------~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPH--SA---DN---W------YDPDLVIKT   67 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSC--CT---TS---C------CCCSEEEEC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeee--cc---cc---c------CCCCEEEEe
Confidence            5799999666665 57899999999999987654444433333333343331  11   11   1      358888876


Q ss_pred             cCcCcccHHHHHHHHHcCCcee
Q 021372          151 YGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ...-.++..+ ..+.+.|+|++
T Consensus        68 sAI~~~npel-~~A~~~gIpv~   88 (89)
T d1j6ua1          68 PAVRDDNPEI-VRARMERVPIE   88 (89)
T ss_dssp             TTCCTTCHHH-HHHHHTTCCEE
T ss_pred             cCcCCCCHHH-HHHHHcCCCcc
Confidence            6433345554 44567888875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.059  Score=42.15  Aligned_cols=34  Identities=15%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .+.++|+|+|+|+.|+..+..|.+.|.+|++++.
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEe
Confidence            3467899999999999999999999999999963

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.036  Score=45.13  Aligned_cols=37  Identities=11%  Similarity=0.211  Sum_probs=29.7

Q ss_pred             ccccEEEEEc-CCHhHHHHHHHHHHcCC--cEEEEecCCC
Q 021372           69 CRQEKILVAN-RGEIAVRVIRTAHEMGI--PCVAVYSTID  105 (313)
Q Consensus        69 ~~~~~ILIig-~g~~a~~v~~al~~~G~--~vi~v~~~~~  105 (313)
                      |+.++|||+| .|.+|..+++.|.+.|.  +|+++..++.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~   51 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   51 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh
Confidence            3467899999 77789999999988885  7888865443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.68  E-value=0.091  Score=41.30  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=38.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESV  118 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~  118 (313)
                      .-+|+|+|+|-.|+..++.++.+|-.|.++|.+.........+..+++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i   76 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI   76 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceE
Confidence            468999999999999999999999999999877765544444444443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.064  Score=46.46  Aligned_cols=76  Identities=7%  Similarity=-0.084  Sum_probs=48.2

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh--------hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH--------VKLADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~--------~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      |++||+| +|.+|..+++.|.+.|++|++++.........        .......+.+    ...+..+.+.+.++.+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Dl~d~~~~~~~~~~~   77 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL----HYGDLSDTSNLTRILREV   77 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEE----CCCCSSCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEE----EEeecCCHHHHHHHHhcc
Confidence            6789999 77799999999999999999986432211100        0011111111    112346788899999999


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      ++|.|+-..
T Consensus        78 ~~d~v~h~a   86 (357)
T d1db3a_          78 QPDEVYNLG   86 (357)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEEee
Confidence            999998653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.61  E-value=0.065  Score=42.60  Aligned_cols=77  Identities=12%  Similarity=0.003  Sum_probs=52.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|+|++|+..+..++.+|. +|++++.++.......++-...+ +.  +..++  ..+.+.++....++|.++-
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~-~~--~~~~~--~~~~i~~~t~g~g~D~vid  100 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIA-DL--SLDTP--LHEQIAALLGEPEVDCAVD  100 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEE-ET--TSSSC--HHHHHHHHHSSSCEEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEE-Ee--CCCcC--HHHHHHHHhCCCCcEEEEE
Confidence            6789999999999999999999988 56666655555555455543333 22  22222  2567777776778999986


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..|
T Consensus       101 ~vG  103 (195)
T d1kola2         101 AVG  103 (195)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            544

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=0.021  Score=43.48  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|+|||+|+|..|.+-++.+.+.|.+|+++.++.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            36899999999999999999999999999997543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.53  E-value=0.031  Score=45.99  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++|+|||+|..|+..+..|.+.|++|+++...+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            469999999999999999999999999997543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.11  Score=42.58  Aligned_cols=73  Identities=22%  Similarity=0.155  Sum_probs=46.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhc-CceEEccCCCCCCCcCCHHHHHHHHHhc-CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLA-DESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+........ .+. ...+.+|       ..+.+.+.++..+. ++|.
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~D-------v~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVD-------LGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECC-------TTCHHHHHHHHTTCCCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEe-------CCCHHHHHHHHHHhCCceE
Confidence            68999999 555899999999999999999875433221111 111 1223332       34455666666554 5898


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        80 lVnn   83 (244)
T d1pr9a_          80 LVNN   83 (244)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8854

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=93.47  E-value=0.057  Score=45.35  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=48.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+.... ...+......+.  .+..+..+.+.+++.+.+.  ++|.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~--~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIV--GDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEE--CCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEe--cccccHHHHHHHHHHHHHHhCCccc
Confidence            58999999 5568999999999999999999765433221 122233333332  1122223345555544433  6998


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      ++..-
T Consensus        83 lvnnA   87 (276)
T d1bdba_          83 LIPNA   87 (276)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            88643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.44  E-value=0.039  Score=42.14  Aligned_cols=34  Identities=9%  Similarity=0.058  Sum_probs=29.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC--cEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI--PCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~--~vi~v~~~~  104 (313)
                      .|||+|+|+|..|+.++..|+++|.  +|++++.++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4799999999999999999999885  678886544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.33  E-value=0.11  Score=43.32  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=29.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++.+.+.
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            58999999 66689999999999999999886543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.32  E-value=0.17  Score=41.97  Aligned_cols=34  Identities=18%  Similarity=0.490  Sum_probs=29.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ++||||+| .|.+|..++++|.+.|++|+++..+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            57799999 58899999999999999999886443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.22  E-value=0.17  Score=42.47  Aligned_cols=72  Identities=14%  Similarity=-0.006  Sum_probs=47.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhh--cC--ceEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKL--AD--ESVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~--ad--~~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      |+|||+| .|.+|..+++.|.+.|++|+.++........  ...+  ..  .++..|       ..+.+.+.+.......
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D-------l~d~~~~~~~~~~~~~   73 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGD-------MADACSVQRAVIKAQP   73 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECC-------TTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEcc-------ccChHHhhhhhccccc
Confidence            6899999 6779999999999999999998754332111  0011  11  123222       4567778887777777


Q ss_pred             CEEeec
Q 021372          145 TMLHPG  150 (313)
Q Consensus       145 d~vip~  150 (313)
                      +.++..
T Consensus        74 ~~~~~~   79 (321)
T d1rpna_          74 QEVYNL   79 (321)
T ss_dssp             SEEEEC
T ss_pred             cccccc
Confidence            777643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.21  E-value=0.31  Score=41.50  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      +|+|||+| +|.+|..+++.|.+.|++|+++..++..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~   39 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG   39 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch
Confidence            68899999 6889999999999999999999765544

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.16  E-value=0.12  Score=42.31  Aligned_cols=72  Identities=10%  Similarity=0.021  Sum_probs=47.0

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      +.|++||+| ++.+|+.+++.|.+.|++|++++.+......     -..+.+|    ..+..+++.+.+.+.++  ++|.
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~-----~~~~~~D----v~~~~~v~~~~~~~~~~~g~iDi   76 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-----LFGVEVD----VTDSDAVDRAFTAVEEHQGPVEV   76 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-----SEEEECC----TTCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcC-----ceEEEEe----cCCHHHHHHHHHHHHHhcCCceE
Confidence            468999999 4558999999999999999999765443221     1122222    11233455555555543  6998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        77 LVnn   80 (237)
T d1uzma1          77 LVSN   80 (237)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.041  Score=46.70  Aligned_cols=35  Identities=3%  Similarity=0.059  Sum_probs=31.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |..|+|+|+|..|+.+++.|.+.|++|.++.....
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            56899999999999999999999999999975443

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.13  E-value=0.093  Score=43.20  Aligned_cols=79  Identities=10%  Similarity=0.019  Sum_probs=48.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh--hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL--HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCT  145 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~--~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id  145 (313)
                      .|.+||+| ++.+|+.+++.|.+.|++|++.+.+......  ......+.+.+.  -+..+..+++.+.+.+.+.  ++|
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~--~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVK--CDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEE--CCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEE--eeCCCHHHHHHHHHHHHHHcCCCC
Confidence            57899999 4558999999999999999998765432211  111222333232  1222334455666555443  699


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      .++..-
T Consensus        83 ilVnnA   88 (247)
T d2ew8a1          83 ILVNNA   88 (247)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.055  Score=41.16  Aligned_cols=34  Identities=15%  Similarity=0.073  Sum_probs=30.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |||+|+|.|.+|..++..|.+.|++|.+++.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            5899999999999999999999999999976544

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.09  E-value=0.098  Score=42.95  Aligned_cols=80  Identities=10%  Similarity=0.099  Sum_probs=44.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCC--cEEEEecCCCcchhhhhhc-CceEEccCCCCCCCcCCHHHHHHHHHh----c
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGI--PCVAVYSTIDKDALHVKLA-DESVCIGEAPSSQSYLLIPNVLSAAIS----R  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~--~vi~v~~~~~~~~~~~~~a-d~~~~v~~~~~~~~~~~~~~l~~~~~~----~  142 (313)
                      .|+|||+| ++.+|+.+++.|.+.|.  .|++...+.+......... .....+.  -+..+...++.+.+.+.+    .
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~--~Dvs~~~~v~~~~~~i~~~~~~~   80 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLP--LTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEE--CCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEE--EecCCHHHHHHHHHHHHHHhCCC
Confidence            48999999 55589999999999996  4555544433222111111 2222221  112223345555555543    3


Q ss_pred             CCCEEeeccC
Q 021372          143 GCTMLHPGYG  152 (313)
Q Consensus       143 ~id~vip~~g  152 (313)
                      ++|.++..-|
T Consensus        81 ~idilinnAG   90 (250)
T d1yo6a1          81 GLSLLINNAG   90 (250)
T ss_dssp             CCCEEEECCC
T ss_pred             CeEEEEEcCc
Confidence            5999987544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=93.06  E-value=0.073  Score=41.54  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+ |..|...++.++..|.+|+.+..+++.......+ +++.+..    .  +....+.+++.....++|+|+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~----~--~~~~~~~~~~~~~~~Gvd~v~  103 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNY----K--TVNSLEEALKKASPDGYDCYF  103 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEET----T--SCSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhccc----c--cccHHHHHHHHhhcCCCceeE
Confidence            578999995 6689999999999999999987655443333333 3444421    1  223466777777778899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       104 D~v  106 (182)
T d1v3va2         104 DNV  106 (182)
T ss_dssp             ESS
T ss_pred             Eec
Confidence            544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.02  E-value=0.12  Score=40.53  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=29.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|+|+|+|+.|+..+..|.++|.++++++.
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            58899999999999999999999999999964

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.052  Score=42.13  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.| +|..|..+++.++..|.+|++++.+.........+ +++.+.    ...++  ..+.+.++....++|+++
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~----~~~~d--~~~~v~~~t~g~g~d~v~  102 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVIN----YREED--LVERLKEITGGKKVRVVY  102 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEE----TTTSC--HHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEE----CCCCC--HHHHHHHHhCCCCeEEEE
Confidence            57899997 55589999999999999999997666544443444 344442    22222  256676666667789888


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       103 d~~  105 (179)
T d1qora2         103 DSV  105 (179)
T ss_dssp             ECS
T ss_pred             eCc
Confidence            543

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.99  E-value=0.11  Score=44.26  Aligned_cols=32  Identities=9%  Similarity=0.076  Sum_probs=26.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcC-CcEEEEecC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMG-IPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G-~~vi~v~~~  103 (313)
                      |||||+| .|.+|..+++.|.+.| ++|++++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3799999 6778999999999998 578888643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.98  E-value=0.064  Score=38.81  Aligned_cols=32  Identities=16%  Similarity=0.092  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .++|+|+|+|.+|..++..++++|.+|.++..
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~   53 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVR   53 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeec
Confidence            57899999999999999999999999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.95  E-value=0.051  Score=42.27  Aligned_cols=75  Identities=12%  Similarity=0.143  Sum_probs=49.4

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+ |.+|...++-++..|.+++++...+........ -++..+.    ...  ....+.+.+.....++|+++
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~----~~~--~~~~~~v~~~t~~~g~d~v~   99 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGD----SRS--VDFADEILELTDGYGVDVVL   99 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEE----TTC--STHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeeccccccccccccccccccc----CCc--cCHHHHHHHHhCCCCEEEEE
Confidence            578999885 899999999999999999988755433322222 2343332    111  12346666666667899998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -+.
T Consensus       100 d~~  102 (183)
T d1pqwa_         100 NSL  102 (183)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.86  E-value=0.079  Score=43.95  Aligned_cols=78  Identities=13%  Similarity=0.041  Sum_probs=47.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+.... ...+......+.  -+..+..+++.+.+.+.+.  ++|.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQH--LDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEE--CCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEE--cccCCHHHHHHHHHHHHHHcCCccE
Confidence            58899999 4558999999999999999998754432221 112223333222  1112233455555555432  6998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        83 lVnn   86 (254)
T d1hdca_          83 LVNN   86 (254)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8864

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=92.85  E-value=0.072  Score=44.08  Aligned_cols=60  Identities=12%  Similarity=0.087  Sum_probs=42.4

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      |||||+| .|.+|..+++.|.+.|+.| .++.....           +       ..+..+.+.+.+++++.++|.|+-.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~-----------~-------~~Dl~~~~~~~~~i~~~~~D~Vih~   61 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE-----------F-------CGDFSNPKGVAETVRKLRPDVIVNA   61 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS-----------S-------CCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc-----------c-------cCcCCCHHHHHHHHHHcCCCEEEEe
Confidence            4699999 6889999999999999744 44322110           1       1124567788888888899998853

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.094  Score=43.45  Aligned_cols=79  Identities=18%  Similarity=0.114  Sum_probs=48.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhhc-----CceEEccCCCCCCCcCCHHHHHHHHHhc-
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKLA-----DESVCIGEAPSSQSYLLIPNVLSAAISR-  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~a-----d~~~~v~~~~~~~~~~~~~~l~~~~~~~-  142 (313)
                      .|.+||+| ++.+|..+++.|.+.|++|++.+.+.+..... ..+.     ...+.+.  -+..+..+++.+++.+.+. 
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~--~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR--CDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEE--CCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEE--ccCCCHHHHHHHHHHHHHhc
Confidence            57899999 55589999999999999999987554322111 1111     1222221  1122234566666666554 


Q ss_pred             -CCCEEeecc
Q 021372          143 -GCTMLHPGY  151 (313)
Q Consensus       143 -~id~vip~~  151 (313)
                       ++|.++..-
T Consensus        88 g~iD~lVnnA   97 (257)
T d1xg5a_          88 SGVDICINNA   97 (257)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCCEEEecc
Confidence             699888653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.83  E-value=0.53  Score=34.79  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=57.4

Q ss_pred             EEEEEc-CCHhHHHHHHHHHH-cCCcEEEEecCCCcchhh-hhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           73 KILVAN-RGEIAVRVIRTAHE-MGIPCVAVYSTIDKDALH-VKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~-~G~~vi~v~~~~~~~~~~-~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ||.|+| .|.+|..+++++.+ .+++++...+..+..... ..-+|..+.+.      ........++.|.+.++.+|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~~~~DvvIDFS------~p~~~~~~~~~~~~~~~~~ViG   74 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFT------HPDVVMGNLEFLIDNGIHAVVG   74 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHTTTCSEEEECC------CTTTHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhccccCCEEEEcc------cHHHHHHHHHHHHhcCCCEEEe
Confidence            699999 69999999998766 577776544332222221 22344444321      1244678888899999999998


Q ss_pred             ccCcCcccHH-HHHH-HHHcCCcee
Q 021372          150 GYGFLAENAV-FVEM-CREHGINFI  172 (313)
Q Consensus       150 ~~g~~~e~~~-~~~~-l~~~gi~~~  172 (313)
                      +.|+..+... +.+. ++..+++++
T Consensus        75 TTG~~~~~~~~l~~~~~~~~~ipil   99 (135)
T d1yl7a1          75 TTGFTAERFQQVESWLVAKPNTSVL   99 (135)
T ss_dssp             CCCCCHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccchhHHHHHHHHHHhcCCCCEE
Confidence            7776544332 2232 234567654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.81  E-value=0.068  Score=44.28  Aligned_cols=79  Identities=9%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+... ....+......+.  -+..+..+++.+.+.+.+.  ++|.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~--~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIA--LDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEE--CCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEE--eeCCCHHHHHHHHHHHHHHhCCccE
Confidence            58899999 556899999999999999999875433221 1122223333332  1122233455555555432  6999


Q ss_pred             Eeecc
Q 021372          147 LHPGY  151 (313)
Q Consensus       147 vip~~  151 (313)
                      ++..-
T Consensus        83 lVnnA   87 (256)
T d1k2wa_          83 LVNNA   87 (256)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            88653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.79  E-value=0.058  Score=41.35  Aligned_cols=32  Identities=22%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +||.|+|.|..|..+++.|++.|++|++++.+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            47999999999999999999999999988544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.74  E-value=0.1  Score=43.21  Aligned_cols=78  Identities=9%  Similarity=0.116  Sum_probs=48.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-----hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-----VKLADESVCIGEAPSSQSYLLIPNVLSAAISR--  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.......     ..+..+...+.  -+..+..+++.+++.+.+.  
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQ--CDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEE--CCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEE--ccCCCHHHHHHHHHHHHHHhC
Confidence            68999999 45589999999999999999998665433211     11222333222  1122233455666555443  


Q ss_pred             CCCEEeec
Q 021372          143 GCTMLHPG  150 (313)
Q Consensus       143 ~id~vip~  150 (313)
                      ++|.++..
T Consensus        87 ~iDilVnn   94 (260)
T d1h5qa_          87 PISGLIAN   94 (260)
T ss_dssp             SEEEEEEC
T ss_pred             CCcEeccc
Confidence            58888764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.70  E-value=0.048  Score=45.10  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=30.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ++||||+| .|.+|..++++|.+.|++|++++..+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            68899999 577999999999999999999875443

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.67  E-value=0.13  Score=42.16  Aligned_cols=79  Identities=5%  Similarity=0.042  Sum_probs=47.9

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHH---HcCCcEEEEecCCCcchhhhh---hcCceEEccCCCCCCCcCCHHHHHHHHH---
Q 021372           71 QEKILVANR-GEIAVRVIRTAH---EMGIPCVAVYSTIDKDALHVK---LADESVCIGEAPSSQSYLLIPNVLSAAI---  140 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~---~~G~~vi~v~~~~~~~~~~~~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~---  140 (313)
                      ||+|||+|+ +.+|+.+++.|-   +.|++|++.+.+.........   .......+.  -+..+...++.+.+.++   
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~Dvs~~~~v~~~~~~i~~~~   79 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILE--IDLRNFDAYDKLVADIEGVT   79 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEE--CCTTCGGGHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEE--EEeccHHHHHHHHhhhHHHh
Confidence            678999994 558999999885   579999998766554322111   112232232  12223345667766553   


Q ss_pred             -hcCCCEEeecc
Q 021372          141 -SRGCTMLHPGY  151 (313)
Q Consensus       141 -~~~id~vip~~  151 (313)
                       ..++|.++..-
T Consensus        80 ~~~~iDiLvnNA   91 (248)
T d1snya_          80 KDQGLNVLFNNA   91 (248)
T ss_dssp             GGGCCSEEEECC
T ss_pred             hcCCcceEEeec
Confidence             24699988653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.63  E-value=0.12  Score=39.39  Aligned_cols=48  Identities=23%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESV  118 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~  118 (313)
                      ..+|||+|.|.+|...++.++.+|.+|++++.++........+ +|+.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i   76 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV   76 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc
Confidence            5789999999999999999999999999997665554444444 34444

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.60  E-value=0.033  Score=43.39  Aligned_cols=31  Identities=13%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEE
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAV  100 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v  100 (313)
                      |+.+|+|+|+|..|..++..|+++|.++.++
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEE
Confidence            5677999999999999999999999876544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.58  E-value=0.095  Score=40.52  Aligned_cols=71  Identities=28%  Similarity=0.335  Sum_probs=47.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .++|||.| +|.+|...++.++.+|.+|+++...+........+ +|..+.         +.+  ...+.-...++|+|+
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~---------~~~--~~~~~~~~~g~D~v~   96 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAAT---------YAE--VPERAKAWGGLDLVL   96 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEE---------GGG--HHHHHHHTTSEEEEE
T ss_pred             CCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeee---------hhh--hhhhhhccccccccc
Confidence            57899999 48999999999999999999887655544433333 343332         222  233344456799998


Q ss_pred             eccC
Q 021372          149 PGYG  152 (313)
Q Consensus       149 p~~g  152 (313)
                      -..|
T Consensus        97 d~~G  100 (171)
T d1iz0a2          97 EVRG  100 (171)
T ss_dssp             ECSC
T ss_pred             cccc
Confidence            6544

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.54  E-value=0.057  Score=43.09  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      +|+|||+|..|+..+..|+++|+ +|++++...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            69999999999999999999998 599886543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.52  E-value=0.084  Score=40.62  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESV  118 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~  118 (313)
                      ..+|||+|+|.+|...++.++.+|.+|++++.++.......++ +|+.+
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i   76 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYI   76 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEe
Confidence            5789999999999999999999999999998776655554554 35554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.52  E-value=0.13  Score=42.42  Aligned_cols=79  Identities=13%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-----hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-----HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-----~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+....     ......+.+.+.  -+..+..+++.+.+.+.+.  
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFR--CDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEE--CCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEE--ccCCCHHHHHHHHHHHHHHcC
Confidence            58899999 5558999999999999999998755432211     111122333221  1122234455555555443  


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      ++|.++..-
T Consensus        83 ~iDiLVnnA   91 (251)
T d1vl8a_          83 KLDTVVNAA   91 (251)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            699998643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.49  E-value=0.15  Score=41.77  Aligned_cols=73  Identities=21%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh-hcC-ceEEccCCCCCCCcCCHHHHHHHHHhc-CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK-LAD-ESVCIGEAPSSQSYLLIPNVLSAAISR-GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~-~ad-~~~~v~~~~~~~~~~~~~~l~~~~~~~-~id~  146 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+....... ... ..+.+|       ..+.+.+.++..+. ++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~D-------v~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVD-------LGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECC-------TTCHHHHHHHHTTCCCCSE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEe-------CCCHHHHHHHHHHcCCCeE
Confidence            58899999 5558999999999999999998754332211111 111 223232       34455666666555 5898


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++..
T Consensus        78 lVnn   81 (242)
T d1cyda_          78 LVNN   81 (242)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.48  E-value=0.071  Score=40.94  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=27.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |++|+|+|.|-+|..++++|++.|+.+.++..|.+
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            56899999999999999999999975433322444

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.48  E-value=0.062  Score=46.04  Aligned_cols=35  Identities=9%  Similarity=-0.049  Sum_probs=29.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcC--CcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMG--IPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G--~~vi~v~~~~  104 (313)
                      .+|||+|||+|..|+..+..|.+.|  ++|+++....
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            3789999999999999999998766  5888886543

>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: Nitrogenase iron-molybdenum protein
domain: Nitrogenase iron-molybdenum protein, alpha chain
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.43  E-value=0.27  Score=44.49  Aligned_cols=88  Identities=11%  Similarity=0.081  Sum_probs=60.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----hhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTM  146 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~  146 (313)
                      .+++.|.+++.....+++.++++|.+++.+...........    .+.+....++       ..+...+.+.+++.++|+
T Consensus       345 Gkrv~i~~~~~~~~~l~~~l~elGmevv~~~~~~~~~~d~~~~~~~~~~~~~i~~-------d~~~~el~~~i~~~~pDL  417 (477)
T d1m1na_         345 GKRVMLYIGGLRPRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMKEMGDSTLLYD-------DVTGYEFEEFVKRIKPDL  417 (477)
T ss_dssp             TCEEEECBSSSHHHHTHHHHHTTTCEEEEEEESSCCHHHHHTTTTTSCTTCEEEE-------SCBHHHHHHHHHHHCCSE
T ss_pred             CCcEEEecCchhHHHHHHHHHHCCCEEEEEeecCCChHHHHHHHHhcCCCcEEec-------CCCHHHHHHHHHhcCCCE
Confidence            57899999888999999999999999998865443322111    2333334332       235678889999999999


Q ss_pred             EeeccCcCcccHHHHHHHHHcCCcee
Q 021372          147 LHPGYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       147 vip~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ++.+.       .......++|++++
T Consensus       418 ~ig~~-------~~k~~a~k~gIP~~  436 (477)
T d1m1na_         418 IGSGI-------KEKFIFQKMGIPFR  436 (477)
T ss_dssp             EEECH-------HHHHHHHHTTCCEE
T ss_pred             EEECc-------hhHHHHHHcCCCcc
Confidence            98542       22334567899875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.079  Score=40.74  Aligned_cols=71  Identities=24%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|.|.+|...++.++.+|.++++++..........++ +|..+.         +.+.+...  ....++|.++-
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~---------~~~~~~~~--~~~~~~D~vid   99 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVN---------SRNADEMA--AHLKSFDFILN   99 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEE---------TTCHHHHH--TTTTCEEEEEE
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEE---------CchhhHHH--HhcCCCceeee
Confidence            5789999999999999999999999999887665544433343 354442         12222221  12356888886


Q ss_pred             ccC
Q 021372          150 GYG  152 (313)
Q Consensus       150 ~~g  152 (313)
                      ..+
T Consensus       100 ~~g  102 (168)
T d1uufa2         100 TVA  102 (168)
T ss_dssp             CCS
T ss_pred             eee
Confidence            543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.40  E-value=0.074  Score=43.77  Aligned_cols=31  Identities=13%  Similarity=0.014  Sum_probs=28.8

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|+|||+|..|..++..|.++|.+|++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4999999999999999999999999999754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.24  E-value=0.12  Score=42.39  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHh--cCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAIS--RGCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~--~~id  145 (313)
                      ..|++||+| ++.+|+.+++.|.+.|++|++.+.+.+... ....+.+....+.  -+..+..+++.+++.+.+  -++|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVH--LDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEE--CCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEE--eecCCHHHHHHHHHHHHHHhCCCe
Confidence            368899999 555899999999999999999875543221 1122233333332  111222334555554443  2599


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      .++..-
T Consensus        83 ilinnA   88 (244)
T d1nffa_          83 VLVNNA   88 (244)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            888653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=92.12  E-value=0.41  Score=39.27  Aligned_cols=83  Identities=10%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh---hcC--ceEEccCCCCCCCcCCHHHHHHHHHh--c
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LAD--ESVCIGEAPSSQSYLLIPNVLSAAIS--R  142 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~---~ad--~~~~v~~~~~~~~~~~~~~l~~~~~~--~  142 (313)
                      .|+|||+|+ +.+|+.+++.+.+.|.+|+++....+.......   ...  ....+ +.....+....+.+.+.+.+  -
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFH-TYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEE-ECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEE-EeecCCCHHHHHHHHHHHHHHcC
Confidence            688999994 458999999999999999988765443221111   111  22212 11111122234555555543  3


Q ss_pred             CCCEEeeccCcC
Q 021372          143 GCTMLHPGYGFL  154 (313)
Q Consensus       143 ~id~vip~~g~~  154 (313)
                      ++|.++..-|..
T Consensus        84 ~iDilvnnAG~~   95 (254)
T d1sbya1          84 TVDILINGAGIL   95 (254)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEeCCCCC
Confidence            599998765533

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.99  E-value=0.11  Score=42.97  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-hhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-LHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCT  145 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id  145 (313)
                      ..|++||+| ++.+|+.+++.|.+.|++|++.+.+..... ....+..+.+.+.  .+..+..+.+.+.+.+.+.  ++|
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~~~~~~~~~~~~~g~iD   82 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVR--HDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEEC--CCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEE--eecCCHHHHHHHHHHHHHHhCCCC
Confidence            368899999 555899999999999999998865433221 1222334444442  1222334456666655443  689


Q ss_pred             EEeeccC
Q 021372          146 MLHPGYG  152 (313)
Q Consensus       146 ~vip~~g  152 (313)
                      .++..-|
T Consensus        83 ilVnnAG   89 (253)
T d1hxha_          83 VLVNNAG   89 (253)
T ss_dssp             EEEECCC
T ss_pred             eEEeccc
Confidence            8886543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.92  E-value=0.16  Score=41.59  Aligned_cols=78  Identities=18%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hhcCceEEccCCCCCCCcCCHHHHHHHHHh--cCCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KLADESVCIGEAPSSQSYLLIPNVLSAAIS--RGCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~--~~id~  146 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++.+.+........ .+-.+.+.+.-  +..+..+++++++.+.+  -++|.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVA--DVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEEC--CTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEe--cCCCHHHHHHHHHHHHHHhCCccE
Confidence            68899999 455899999999999999999875543222111 12233333321  11223345555555544  25998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++-.
T Consensus        83 Linn   86 (241)
T d2a4ka1          83 VAHF   86 (241)
T ss_dssp             EEEG
T ss_pred             eccc
Confidence            8864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.92  E-value=0.19  Score=41.55  Aligned_cols=79  Identities=10%  Similarity=0.125  Sum_probs=47.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hh---hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LH---VKLADESVCIGEAPSSQSYLLIPNVLSAAISR--  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~---~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.....  ..   .....+.+.+.  -+..+..+++.+.+.+.++  
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~--~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVK--GDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEE--CCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEE--ccCCCHHHHHHHHHHHHHHhC
Confidence            58899999 556899999999999999999875432111  10   11112223222  1122233455555555443  


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      ++|.++-.-
T Consensus        85 ~iDiLVnnA   93 (261)
T d1geea_          85 KLDVMINNA   93 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEeeccc
Confidence            699988653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.91  E-value=0.13  Score=42.87  Aligned_cols=78  Identities=4%  Similarity=0.017  Sum_probs=47.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh------cCceEEccCCCCCCCcCCHHHHHHHHHhc
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL------ADESVCIGEAPSSQSYLLIPNVLSAAISR  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~------ad~~~~v~~~~~~~~~~~~~~l~~~~~~~  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+...... .+      ..+.+.+.  -+..+..+++.+++.+.+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~--~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVV--ADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEE--CCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEE--ccCCCHHHHHHHHHHHHHH
Confidence            58899999 555899999999999999999975543221111 11      11222221  1112233455556555443


Q ss_pred             --CCCEEeec
Q 021372          143 --GCTMLHPG  150 (313)
Q Consensus       143 --~id~vip~  150 (313)
                        ++|.++..
T Consensus        83 ~g~iDilvnn   92 (272)
T d1xkqa_          83 FGKIDVLVNN   92 (272)
T ss_dssp             HSCCCEEEEC
T ss_pred             hCCceEEEeC
Confidence              69998865

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.86  E-value=0.14  Score=37.40  Aligned_cols=70  Identities=9%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeecc
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGY  151 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~  151 (313)
                      |+++|+|.|..|..+++.|++  .++++++.+++........ +..+..+      +..+.+.|.+ +.-...+.++...
T Consensus         1 kHivI~G~g~~g~~l~~~L~~--~~i~vi~~d~~~~~~~~~~-~~~~i~G------d~~~~~~L~~-a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRG--SEVFVLAEDENVRKKVLRS-GANFVHG------DPTRVSDLEK-ANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCG--GGEEEEESCTTHHHHHHHT-TCEEEES------CTTSHHHHHH-TTCTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHcC--CCCEEEEcchHHHHHHHhc-Ccccccc------ccCCHHHHHH-hhhhcCcEEEEec
Confidence            569999999999999999965  4567777666644433322 3333232      2334444444 4445577888654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.86  E-value=0.16  Score=41.76  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=45.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcCceEEccCCCCCCCcCCHHHHHHHHHh-c-CC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-R-GC  144 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~-~i  144 (313)
                      |.+||+| ++.+|+.+++.|.+.|++|++.+.+.+.....    ...-.+.+.+.  -+..+...++.+++.+.+ . ++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVK--VDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE--eeCCCHHHHHHHHHHHHHHhCCc
Confidence            4468999 45589999999999999999987554322111    11112333232  112223345555555543 2 59


Q ss_pred             CEEeec
Q 021372          145 TMLHPG  150 (313)
Q Consensus       145 d~vip~  150 (313)
                      |.++..
T Consensus        80 DilVnn   85 (255)
T d1gega_          80 DVIVNN   85 (255)
T ss_dssp             CEEEEC
T ss_pred             cEEEec
Confidence            988854

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.80  E-value=0.1  Score=44.72  Aligned_cols=31  Identities=13%  Similarity=0.081  Sum_probs=26.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      ||||||+| +|.+|..+++.|.+.|++|.++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~   33 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV   33 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            68899999 77799999999999998865553

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.77  E-value=0.095  Score=40.24  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=27.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .++|+|+|+|..|..++.+++++|.++.++.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            4789999999999999999999999876654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.69  E-value=0.073  Score=45.58  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ++|+|||+| .|.+|..+++.|.+.|++|+.++.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            367999999 777899999999999999999864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.68  E-value=0.2  Score=38.22  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=26.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAV  100 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v  100 (313)
                      .++|||+|.|.+|..+++.|...|++ +.++
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~   54 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVA   54 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcCCcEEEEE
Confidence            68899999999999999999999996 5555

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.65  E-value=0.089  Score=42.62  Aligned_cols=35  Identities=14%  Similarity=0.096  Sum_probs=30.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |..-|+|+|+|+.|+..+..|.+.|++|++++..+
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            45569999999999999999999999999997544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.64  E-value=0.23  Score=38.48  Aligned_cols=121  Identities=15%  Similarity=0.089  Sum_probs=68.1

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeec
Q 021372           72 EKILVANRGEIAVRVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPG  150 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~  150 (313)
                      .||.|+|.|..|...+++++.. +++++.+. +.+... ...++.+.- ++  ....-|.+.++++   ...++|+|+..
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~-d~~~~~-~~~~~~~~~-~~--~~~~~~~~~~~ll---~~~~iD~v~I~   73 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVA-SRSLEK-AKAFATANN-YP--ESTKIHGSYESLL---EDPEIDALYVP   73 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEE-CSSHHH-HHHHHHHTT-CC--TTCEEESSHHHHH---HCTTCCEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEE-eCCccc-cccchhccc-cc--cceeecCcHHHhh---hccccceeeec
Confidence            5799999999999999999886 77777665 333221 112222111 11  1111134555544   46789999876


Q ss_pred             cCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          151 YGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       151 ~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      .. .......+..+.+.|.+++.--|-+ ....+=..+.++.++.|+..--.
T Consensus        74 tp-~~~h~~~~~~~l~~g~~v~~EKP~~-~~~~e~~~l~~~~~~~~~~~~v~  123 (184)
T d1ydwa1          74 LP-TSLHVEWAIKAAEKGKHILLEKPVA-MNVTEFDKIVDACEANGVQIMDG  123 (184)
T ss_dssp             CC-GGGHHHHHHHHHTTTCEEEECSSCS-SSHHHHHHHHHHHHTTTCCEEEC
T ss_pred             cc-chhhcchhhhhhhccceeecccccc-cCHHHHHHHHHHHHhhCCEEEEE
Confidence            42 2234566666667898876321111 11122234556777788765433

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.33  Score=39.63  Aligned_cols=36  Identities=11%  Similarity=0.044  Sum_probs=30.4

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+| ++.+|+.+++.|.+.|++|++++.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            358899999 566899999999999999999976543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.45  E-value=0.11  Score=42.30  Aligned_cols=33  Identities=24%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~  104 (313)
                      .+|+|+|+|+.|+.++..|++.|+ +|.++...+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            479999999999999999999997 777776443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.44  E-value=0.19  Score=42.00  Aligned_cols=34  Identities=9%  Similarity=0.226  Sum_probs=29.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++++.+.
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            48899999 66689999999999999999997654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.11  Score=42.71  Aligned_cols=78  Identities=13%  Similarity=0.063  Sum_probs=46.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchh-hhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL-HVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTM  146 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~-~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~  146 (313)
                      .|++||+| ++.+|+.+++.+.+.|++|++.+.+.+.... ...+......+.  -+..+...++.+++.+.+.  ++|.
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLM--LNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEE--CCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEE--EEecCHHHhhhhhhhhhcccCCcce
Confidence            57899999 5558999999999999999988755432211 111222222221  1112233455555555433  5998


Q ss_pred             Eeec
Q 021372          147 LHPG  150 (313)
Q Consensus       147 vip~  150 (313)
                      ++-.
T Consensus        82 lVnn   85 (243)
T d1q7ba_          82 LVNN   85 (243)
T ss_dssp             EEEC
T ss_pred             ehhh
Confidence            8854

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.094  Score=44.42  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      +|||||+| +|.+|..+++.|.+.|++|++++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            47899999 667899999999999999999863

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.24  E-value=0.092  Score=40.53  Aligned_cols=33  Identities=12%  Similarity=-0.072  Sum_probs=30.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |||.|+|+|..|..++..|.+.|++|.+++.++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            789999999999999999999999999996543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.20  E-value=0.074  Score=41.95  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+| ++.+|..+++.+.+.|.+|++++.+.+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            368999999 677999999999999999999876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.20  E-value=0.17  Score=41.90  Aligned_cols=79  Identities=11%  Similarity=0.026  Sum_probs=46.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh---cCceEEccCCCCCCCcCCHHHHHHHHHhc--C
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL---ADESVCIGEAPSSQSYLLIPNVLSAAISR--G  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~---ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~  143 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+........ .+   ..+.+.+.  -+..+..+++.+++.+.+.  +
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYV--CDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEE--CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE--ccCCCHHHHHHHHHHHHHHhCC
Confidence            68899999 455899999999999999999875543221111 11   11222221  1112223455555554432  6


Q ss_pred             CCEEeecc
Q 021372          144 CTMLHPGY  151 (313)
Q Consensus       144 id~vip~~  151 (313)
                      +|.++..-
T Consensus        83 iDilVnna   90 (260)
T d1zema1          83 IDFLFNNA   90 (260)
T ss_dssp             CCEEEECC
T ss_pred             CCeehhhh
Confidence            99888643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.20  E-value=0.27  Score=40.61  Aligned_cols=80  Identities=10%  Similarity=0.104  Sum_probs=46.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-hh--cCceEEccCCCCCCCcCCHHHHHHHHHhc--C
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-KL--ADESVCIGEAPSSQSYLLIPNVLSAAISR--G  143 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~~--ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~  143 (313)
                      ..|++||+| ++.+|+.+++.|.+.|++|++++.+........ .+  ......+.  -+..+..+++.+++.+.+.  +
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVH--CDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEE--CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEE--ccCCCHHHHHHHHHHHHHHcCC
Confidence            368899999 555899999999999999999875433211111 11  11121121  1122233455555544433  6


Q ss_pred             CCEEeecc
Q 021372          144 CTMLHPGY  151 (313)
Q Consensus       144 id~vip~~  151 (313)
                      +|.++..-
T Consensus        83 iD~lVnnA   90 (268)
T d2bgka1          83 LDIMFGNV   90 (268)
T ss_dssp             CCEEEECC
T ss_pred             cceecccc
Confidence            99988643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.13  E-value=0.09  Score=40.44  Aligned_cols=33  Identities=9%  Similarity=0.091  Sum_probs=28.7

Q ss_pred             cEEEEE-cCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVA-NRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIi-g~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +||.|+ |.|.+|..+++.|.+.|++|++.+.++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468898 679999999999999999999996554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=91.11  E-value=0.37  Score=37.21  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             ccEEEEEcCCHhHHH-HHHHHHHcC--CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVR-VIRTAHEMG--IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~-v~~al~~~G--~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      +.||.|+|.|..|.. .++++++.+  ++++.+. +++... ...+++..- .     ..-|.+.++   ++...++|+|
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~-d~~~~~-~~~~~~~~~-~-----~~~~~~~~e---ll~~~~id~v   71 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVT-SRTRSH-AEEFAKMVG-N-----PAVFDSYEE---LLESGLVDAV   71 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEE-CSSHHH-HHHHHHHHS-S-----CEEESCHHH---HHHSSCCSEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEE-eccHhh-hhhhhcccc-c-----cceeeeeec---ccccccccee
Confidence            458999999999876 578888864  4566554 333211 112222110 0     001344444   4456789998


Q ss_pred             eeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHH---HHHHHHHCCCCCC
Q 021372          148 HPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKST---ARETMKNAGVPTV  200 (313)
Q Consensus       148 ip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~---~~~~l~~~Gip~p  200 (313)
                      +.... ...+..++..+.+.|.+++.--|-    +.+...   +.++.++.|+..-
T Consensus        72 ~I~tp-~~~h~~~~~~al~~gk~V~~EKPl----~~~~~e~~~l~~~~~~~~~~~~  122 (181)
T d1zh8a1          72 DLTLP-VELNLPFIEKALRKGVHVICEKPI----STDVETGKKVVELSEKSEKTVY  122 (181)
T ss_dssp             EECCC-GGGHHHHHHHHHHTTCEEEEESSS----SSSHHHHHHHHHHHHHCSSCEE
T ss_pred             ecccc-ccccccccccccccchhhhcCCCC----cCCHHHHHHHHHHHHHhCCeEE
Confidence            86542 223455666666789887631111    223333   4566677887653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=91.07  E-value=0.17  Score=38.89  Aligned_cols=33  Identities=12%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEM-GIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~~  103 (313)
                      +.||.|+|.|.+|..+++++++. +++++.+.+.
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~   36 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSR   36 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEES
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEec
Confidence            46899999999999999999885 7888776543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.26  Score=41.62  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=29.9

Q ss_pred             cccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..|++||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            368899999 55589999999999999999987554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.23  Score=40.75  Aligned_cols=80  Identities=11%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh-hhh-----cCceEEccCCCCCCCcCCHHHHHHHHHh-c
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH-VKL-----ADESVCIGEAPSSQSYLLIPNVLSAAIS-R  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~-~~~-----ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~  142 (313)
                      .|++||+| ++.+|+.+++.+.+.|.+|++++.+.+..... ..+     ......+.  -+..+..+++.+++.+.+ +
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ--CDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEE--CCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEE--eecCCHHHHHHHHHHHHHHc
Confidence            57899999 45589999999999999999987554322111 111     11222221  112223445555555543 2


Q ss_pred             -CCCEEeeccC
Q 021372          143 -GCTMLHPGYG  152 (313)
Q Consensus       143 -~id~vip~~g  152 (313)
                       ++|.++..-+
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence             5999887644

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.00  E-value=0.16  Score=38.88  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=48.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCC-cEEEEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGI-PCVAVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~-~vi~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      ..+|||+| +|.+|...++.++.+|. +|++++.++.......++ ++..+..    ..+  ...+.+.+.....++|++
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~----~~~--~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINA----SMQ--DPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEET----TTS--CHHHHHHHHTTTSCEEEE
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeecc----CCc--CHHHHHHHHhhcccchhh
Confidence            57899999 59999999999999996 666665555444443444 3443321    112  225566666555678888


Q ss_pred             eecc
Q 021372          148 HPGY  151 (313)
Q Consensus       148 ip~~  151 (313)
                      +-..
T Consensus       102 id~~  105 (170)
T d1jvba2         102 IDLN  105 (170)
T ss_dssp             EESC
T ss_pred             hccc
Confidence            8543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.85  E-value=0.2  Score=38.50  Aligned_cols=74  Identities=18%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEE-EEecCCCcchhhhhh-cCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCV-AVYSTIDKDALHVKL-ADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi-~v~~~~~~~~~~~~~-ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      ..+|||.|+|.+|...++.++.+|..++ +++.++........+ +++.+..    .   ..+.+.+.+.....++|.++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~----~---~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDA----R---RDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEET----T---SCHHHHHHHHTTTCCEEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecC----c---ccHHHHHHHhhCCCCceEEE
Confidence            5789999999999999999999987554 454444333333333 4444421    1   12356666666667799998


Q ss_pred             ecc
Q 021372          149 PGY  151 (313)
Q Consensus       149 p~~  151 (313)
                      -..
T Consensus       106 d~~  108 (172)
T d1h2ba2         106 DFV  108 (172)
T ss_dssp             ESS
T ss_pred             Eec
Confidence            554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.84  E-value=0.13  Score=40.51  Aligned_cols=33  Identities=9%  Similarity=0.002  Sum_probs=29.6

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .-|+|||+|..|+..+..|.+.|++|.+++...
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            349999999999999999999999999997654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=90.82  E-value=0.08  Score=41.88  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=30.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|+||.|+|+|..|..++..|.+.|++|.++..+
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            3678999999999999999999999999998644

>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/glutamate racemase
family: Aspartate/glutamate racemase
domain: Glutamate racemase
species: Aquifex pyrophilus [TaxId: 2714]

Probab=90.78  E-value=0.21  Score=35.35  Aligned_cols=90  Identities=11%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      +||+|..+|--|+.+++++++.  +.+++-+.++.. .....+..++..           .....+.++..++++|+++.
T Consensus         1 mkIgifDSGiGGLtVl~~l~~~lP~~~~iY~~D~a~-~PYG~ks~~~I~-----------~~~~~~~~~l~~~~~~~iVi   68 (105)
T d1b74a1           1 MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTAR-VPYGIRSKDTII-----------RYSLECAGFLKDKGVDIIVV   68 (105)
T ss_dssp             CEEEEEESSSTHHHHHHHHHHHSSSCEEEEEECGGG-CCGGGSCHHHHH-----------HHHHHHHHHHHTTTCSEEEE
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHCCCCCEEEEecCCC-CCCCCCCHHHHH-----------HHHHHHHHHHHHcCCCEEEE
Confidence            4699999999999999999886  444444432211 111111111111           22445667778889999997


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      .+.+.+- ..+..+-++..+|++|-
T Consensus        69 ACNTaS~-~al~~lr~~~~~PiiGv   92 (105)
T d1b74a1          69 ACNTASA-YALERLKKEINVPVFGV   92 (105)
T ss_dssp             CCHHHHH-HHHHHHHHHSSSCEEES
T ss_pred             ecCcHHH-HHHHHHHHHCCCCEEEe
Confidence            7632211 12223334567888873

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.71  E-value=0.19  Score=41.43  Aligned_cols=79  Identities=14%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhh----hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--C
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALH----VKLADESVCIGEAPSSQSYLLIPNVLSAAISR--G  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~  143 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.+.....    .....+.+.+.  -+..+..+++.+.+.+.+.  +
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~--~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR--CDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE--ccCCCHHHHHHHHHHHHHHcCC
Confidence            58899999 55689999999999999999987543322111    11112233232  1122233455666555443  6


Q ss_pred             CCEEeecc
Q 021372          144 CTMLHPGY  151 (313)
Q Consensus       144 id~vip~~  151 (313)
                      +|.++..-
T Consensus        89 iDilvnnA   96 (255)
T d1fmca_          89 VDILVNNA   96 (255)
T ss_dssp             CCEEEECC
T ss_pred             CCEeeeCC
Confidence            99888754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.69  E-value=0.15  Score=43.16  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .-.|+|||+|..|+..+..|++.|+++++++..+.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            45799999999999999999999999999976443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.64  E-value=1.4  Score=35.54  Aligned_cols=120  Identities=11%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc-EEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP-CVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~-vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||+|.|.+|-.++..|.+.|+. ++++|.|.-..   +.+...+.+-   ..+-...-.+.+.+.+++..++.-+-
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~---sNL~RQ~l~~---~~diG~~K~~~a~~~l~~~np~~~i~  103 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSL---SNLQRQTLHS---DATVGQPKVESARDALTRINPHIAIT  103 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCG---GGGGTCTTCC---GGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccch---hhhhhhcccc---HhhcCchHHHHHHHHHHHhhcccchh
Confidence            57899999999999999999999995 55664433221   2333333211   11111233667777777777776665


Q ss_pred             ccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhCCHHHHHHHHHHCCCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFIGPNPDSIRIMGDKSTARETMKNAGVPTVP  201 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~DK~~~~~~l~~~Gip~p~  201 (313)
                      .+............+....+-+-..+...     .+....+.+.++++|...
T Consensus       104 ~~~~~~~~~~~~~~~~~~divid~~d~~~-----~~~~in~~~~~~~ip~i~  150 (247)
T d1jw9b_         104 PVNALLDDAELAALIAEHDLVLDCTDNVA-----VRNQLNAGCFAAKVPLVS  150 (247)
T ss_dssp             EECSCCCHHHHHHHHHTSSEEEECCSSHH-----HHHHHHHHHHHHTCCEEE
T ss_pred             hhhhhhhhccccccccccceeeeccchhh-----hhhhHHHHHHHhCCCccc
Confidence            44322122233344444444333222222     244455666777777553

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.64  E-value=0.12  Score=39.41  Aligned_cols=33  Identities=9%  Similarity=0.052  Sum_probs=29.8

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |+||.|+|-|.+|..+++.|.+.|++|.+++.+
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            568999999999999999999999999998544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.59  E-value=0.21  Score=41.52  Aligned_cols=34  Identities=6%  Similarity=0.034  Sum_probs=29.3

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58899999 55589999999999999999987544

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.57  E-value=0.11  Score=41.31  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=30.6

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |...|+|+|+|+.|+..+..|.++|.+|.+++..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4667999999999999999999999999999643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.40  E-value=0.21  Score=41.07  Aligned_cols=78  Identities=12%  Similarity=0.020  Sum_probs=47.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhh---hcCceEEccCCCCCCCcCCHHHHHHHHHhc--CC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVK---LADESVCIGEAPSSQSYLLIPNVLSAAISR--GC  144 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~i  144 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+.......   .......+.  -+..+..+++.+++.+.++  ++
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQ--HDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEE--CCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEE--ccCCCHHHHHHHHHHHHHHhCCc
Confidence            68899999 5558999999999999999998754432211111   112222221  1122233455555555442  69


Q ss_pred             CEEeec
Q 021372          145 TMLHPG  150 (313)
Q Consensus       145 d~vip~  150 (313)
                      |.++..
T Consensus        84 DiLVnn   89 (251)
T d1zk4a1          84 STLVNN   89 (251)
T ss_dssp             CEEEEC
T ss_pred             eEEEec
Confidence            988864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.37  E-value=0.079  Score=41.73  Aligned_cols=35  Identities=11%  Similarity=0.087  Sum_probs=31.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .+||.|+|+|.+|..++..+...|++|++++.+++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            68899999999999999999999999999976554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=90.29  E-value=0.3  Score=40.23  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=29.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+| ++.+|..+++.+.+.|++|++++.+.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            68899999 55689999999999999999987554

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.22  E-value=0.17  Score=41.17  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=28.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ||.|||+| ++.+|+.+++.|.+.|++|++++.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~   34 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIR   34 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999 5568999999999999999998754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.22  E-value=0.29  Score=40.27  Aligned_cols=78  Identities=9%  Similarity=0.040  Sum_probs=46.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch--hh----hhhcCceEEccCCCCCCCcCCHHHHHHHHHh-c
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA--LH----VKLADESVCIGEAPSSQSYLLIPNVLSAAIS-R  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~--~~----~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.....  ..    .....+.+.+.  -+..+..+++.+.+.+.+ +
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG--ADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEEC--CCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEE--CCCCCHHHHHHHHHHHHHHh
Confidence            57899999 555899999999999999999864322111  11    11222333332  122223345555554433 2


Q ss_pred             -CCCEEeec
Q 021372          143 -GCTMLHPG  150 (313)
Q Consensus       143 -~id~vip~  150 (313)
                       ++|.++..
T Consensus        82 G~iDiLVnn   90 (260)
T d1x1ta1          82 GRIDILVNN   90 (260)
T ss_dssp             SCCSEEEEC
T ss_pred             CCCcEEEee
Confidence             59998864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.16  Score=39.06  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=29.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .++|||+|+|..++.++-+|.++|.++.++..+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            688999999999999999999999997777543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=90.06  E-value=0.29  Score=40.29  Aligned_cols=34  Identities=12%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             ccEEEEEcC-CHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-GEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+|+ +.+|+.+++.|.+.|++|++.+.+.
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            688999994 5589999999999999999987543

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.11  Score=41.46  Aligned_cols=77  Identities=18%  Similarity=0.117  Sum_probs=47.1

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchh---hhhhcCc----eEEccCCCCCCCcCCHHHHHHHHHhcCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDAL---HVKLADE----SVCIGEAPSSQSYLLIPNVLSAAISRGC  144 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~---~~~~ad~----~~~v~~~~~~~~~~~~~~l~~~~~~~~i  144 (313)
                      +||+++|.+..+..+++.|.+.|++|+.|.+.++....   ...++.+    .+...  ...........+++..++.++
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~--~~~~~~~~~~~~~~~l~~~~~   78 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYS--RWRAKGQALPDVVAKYQALGA   78 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECS--CCEETTEECHHHHHHHHTTCC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccc--cccccccccHHHHHHHHHhCC
Confidence            57999999999999999999999999877654332211   1112211    12111  111111223456777788889


Q ss_pred             CEEeec
Q 021372          145 TMLHPG  150 (313)
Q Consensus       145 d~vip~  150 (313)
                      |.++..
T Consensus        79 Dliv~~   84 (203)
T d2bw0a2          79 ELNVLP   84 (203)
T ss_dssp             SEEEES
T ss_pred             CceEEe
Confidence            987754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.03  E-value=0.22  Score=35.56  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=26.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHH---cCCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHE---MGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~---~G~~vi~v~~  102 (313)
                      ..++++|+|+|.+|..++..+.+   .|.+|.++..
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~   52 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYR   52 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecc
Confidence            35899999999999998876555   4889998864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.02  E-value=0.18  Score=41.07  Aligned_cols=35  Identities=6%  Similarity=0.077  Sum_probs=30.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ...|+|||+|+.|+..+..|.++|++|.+++..+.
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            34599999999999999999999999999975543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.99  E-value=0.092  Score=42.01  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .++|+|-|-|..|..+++.|.+.|.+|++.+.+..
T Consensus        27 gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~   61 (201)
T d1c1da1          27 GLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTE   61 (201)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHH
Confidence            68899999999999999999999999998865543

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.53  Score=37.26  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +||+++|.+..|+.++++|.+.|+++..|.+.+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~   33 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHT   33 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            478888999999999999999999998776543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.82  E-value=0.2  Score=38.97  Aligned_cols=74  Identities=9%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      ..+|||.| +|..|...++-++.+|.+|+...+.+........+..... ++..   +   +.++........++|+|+-
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v-i~~~---~---~~~~~~~~~~~~gvD~vid  104 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV-LARE---D---VMAERIRPLDKQRWAAAVD  104 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE-EECC---------------CCSCCEEEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee-eecc---h---hHHHHHHHhhccCcCEEEE
Confidence            56799999 6778999999999999999998877666655555543333 2211   1   1123333334567898885


Q ss_pred             cc
Q 021372          150 GY  151 (313)
Q Consensus       150 ~~  151 (313)
                      ..
T Consensus       105 ~v  106 (176)
T d1xa0a2         105 PV  106 (176)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.79  E-value=0.16  Score=38.23  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +||.|+|.|..|..+++.|.+.|+++++.+.++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4799999999999999999999999988764443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.76  E-value=0.18  Score=39.40  Aligned_cols=32  Identities=6%  Similarity=-0.023  Sum_probs=26.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~  103 (313)
                      +||+|+|+|..|..++..|+++  +.+|++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            5799999999999999999998  4567777643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.57  E-value=0.64  Score=35.04  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=59.4

Q ss_pred             cEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .||.|+|.|..|.. .+.+++.. +++++.+.+ ++... ...++..+ .++      -+.+.+.++     .++|+|+.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d-~~~~~-~~~~~~~~-~~~------~~~~~~~l~-----~~~D~V~I   67 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWS-PTRAK-ALPICESW-RIP------YADSLSSLA-----ASCDAVFV   67 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEEC-SSCTT-HHHHHHHH-TCC------BCSSHHHHH-----TTCSEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEe-chhHh-hhhhhhcc-ccc------ccccchhhh-----hhcccccc
Confidence            57999999998875 67888775 778776653 22211 11222211 111      123344543     35999886


Q ss_pred             ccCcCcccHHHHHHHHHcCCcee-----CCCHHHHHHhCCHHHHHHHHHHCCCCC
Q 021372          150 GYGFLAENAVFVEMCREHGINFI-----GPNPDSIRIMGDKSTARETMKNAGVPT  199 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~-----g~~~~~i~~~~DK~~~~~~l~~~Gip~  199 (313)
                      .. ........+..+.+.|.+++     +.+.+.+.      .+.+++++.|+..
T Consensus        68 ~t-p~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~------~l~~~a~~~~~~~  115 (164)
T d1tlta1          68 HS-STASHFDVVSTLLNAGVHVCVDKPLAENLRDAE------RLVELAARKKLTL  115 (164)
T ss_dssp             CS-CTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHH------HHHHHHHHTTCCE
T ss_pred             cc-cchhccccccccccccceeeccccccCCHHHHH------HHHHHHHHcCCcE
Confidence            54 22233555666667888874     23333322      2345667777654

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.43  E-value=0.8  Score=39.33  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             cEEEEEc-CCHhHHHHHHHH-HHcCCcEEEEe
Q 021372           72 EKILVAN-RGEIAVRVIRTA-HEMGIPCVAVY  101 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al-~~~G~~vi~v~  101 (313)
                      |||||+| +|.+|..+++.| ++.|++|+++|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            4899999 677999999888 45799999986

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.41  E-value=0.35  Score=39.75  Aligned_cols=35  Identities=9%  Similarity=0.065  Sum_probs=29.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            57899999 555899999999999999999875543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.37  E-value=0.65  Score=34.88  Aligned_cols=43  Identities=26%  Similarity=0.249  Sum_probs=34.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhh
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKL  113 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~  113 (313)
                      ..+|||.|+|++|...++.++..|.+|++++.+.+.......+
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            5789999999999999999999999998887655544443344

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.32  E-value=0.28  Score=40.50  Aligned_cols=34  Identities=6%  Similarity=-0.008  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|.+||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           5 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            57899999 55689999999999999999987544

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.22  E-value=0.25  Score=39.24  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=29.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..-|+|||+|+.|+..+..|.++|.+|.+++..
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            345999999999999999999999999999754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.19  Score=38.66  Aligned_cols=35  Identities=11%  Similarity=0.116  Sum_probs=31.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|+++|+|-|.+|+.+++.++..|.+|++++.+|.
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            68999999999999999999999999999966543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.32  Score=39.74  Aligned_cols=79  Identities=9%  Similarity=-0.095  Sum_probs=46.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----hhcCceEEccCCCCCCCcCCHHHHHHHHHh-c-C
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAIS-R-G  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~-~  143 (313)
                      .|.+||+| ++.+|+.+++.+.+.|++|++++.+.+......    ....+.+.+.  -+..+...++.+++.+.+ . .
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~--~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFV--VDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE--eeCCCHHHHHHHHHHHHHHcCC
Confidence            57899999 455899999999999999999876543221111    1111222221  112223345555555533 3 4


Q ss_pred             CCEEeecc
Q 021372          144 CTMLHPGY  151 (313)
Q Consensus       144 id~vip~~  151 (313)
                      +|.++..-
T Consensus        85 idilinna   92 (244)
T d1yb1a_          85 VSILVNNA   92 (244)
T ss_dssp             CSEEEECC
T ss_pred             CceeEeec
Confidence            88887653

>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: PurP N-terminal domain-like
domain: 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=89.01  E-value=0.37  Score=33.20  Aligned_cols=84  Identities=12%  Similarity=0.076  Sum_probs=50.9

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC-cchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTID-KDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG  152 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~-~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g  152 (313)
                      |.++|+. +++++++-||+.|++++++..... ..-.....+|+.+.++      ++.+   ++      +-++|+..++
T Consensus         2 I~tl~SH-SALqI~~GAK~EGF~T~~v~~~~r~~~Y~~f~~~De~i~~d------~~~~---i~------~~naI~IPhg   65 (96)
T d2pbza1           2 VSTIASH-SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAE------EMTS---IL------NDDGIVVPHG   65 (96)
T ss_dssp             EEEESST-THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECS------CSCC---TT------CCSSBCCCBT
T ss_pred             EEEEcch-hHHHHhccHHHcCCcEEEEEcCCCcchhHhCCcceEEEEeh------hHHH---Hh------HCCeEEEcCC
Confidence            4455544 699999999999999987764433 2333345789988664      1222   11      1245665555


Q ss_pred             cCcccHHHHHHHHHcCCceeCC
Q 021372          153 FLAENAVFVEMCREHGINFIGP  174 (313)
Q Consensus       153 ~~~e~~~~~~~l~~~gi~~~g~  174 (313)
                      ++.+... .+.+++..+|++|+
T Consensus        66 Sfv~Y~G-~~~ie~~~VP~FGN   86 (96)
T d2pbza1          66 SFVAYLG-IEAIEKAKARFFGN   86 (96)
T ss_dssp             THHHHSC-HHHHHTCCSCCBSC
T ss_pred             CEEEEec-HHHHhhCCCCcccC
Confidence            4444322 24456778888875

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.01  E-value=0.16  Score=41.69  Aligned_cols=73  Identities=12%  Similarity=0.012  Sum_probs=44.4

Q ss_pred             EEEEEcCC-HhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--CCCEEee
Q 021372           73 KILVANRG-EIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISR--GCTMLHP  149 (313)
Q Consensus        73 ~ILIig~g-~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~id~vip  149 (313)
                      ++||+|++ .+|+.+++.|.+.|++|++.+.+................++    ..+..+.+++++.+.+.  ++|.++.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~d----v~~~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLK----PMSEQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSE----ECCCCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEec----cCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            58999944 48999999999999999988654332221111111111111    11234566777665543  6998885

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.21  Score=41.83  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |+|||+|..|+..+..|++.|++|++++...
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            8999999999999999999999999997543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.94  E-value=0.33  Score=39.96  Aligned_cols=79  Identities=8%  Similarity=-0.065  Sum_probs=46.8

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh-h---hcCceEEccCCCCCCCcCCHHHHHHHHH-hc--
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV-K---LADESVCIGEAPSSQSYLLIPNVLSAAI-SR--  142 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~-~---~ad~~~~v~~~~~~~~~~~~~~l~~~~~-~~--  142 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+........ .   ...+...+.  -+..+..+++.+++.+. ++  
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~~~~~~~~~~~g   85 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSV--CDASLRPEREKLMQTVSSMFGG   85 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEe--ccCCCHHHHHHHHHHHHHHhCC
Confidence            68899999 555899999999999999999875543221111 1   111222221  11122334555555543 33  


Q ss_pred             CCCEEeecc
Q 021372          143 GCTMLHPGY  151 (313)
Q Consensus       143 ~id~vip~~  151 (313)
                      .+|.++..-
T Consensus        86 ~idilvnnA   94 (259)
T d1xq1a_          86 KLDILINNL   94 (259)
T ss_dssp             CCSEEEEEC
T ss_pred             Ccccccccc
Confidence            489988654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.93  E-value=0.39  Score=39.37  Aligned_cols=78  Identities=14%  Similarity=0.088  Sum_probs=45.7

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhh----hhcCceEEccCCCCCCCcCCHHHHHHHHHh-c-C
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHV----KLADESVCIGEAPSSQSYLLIPNVLSAAIS-R-G  143 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~----~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~-~-~  143 (313)
                      .|.+||+| ++.+|+.+++.|.+.|++|++++.+.+......    ....+...+.  -+..+..+++.+++.+.+ + +
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~--~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT--CDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEE--CCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEE--eecCCHHHHHHHHHHHHHHhCC
Confidence            36779999 555899999999999999999875433211111    1112222221  112223345555555543 3 5


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|.++..
T Consensus        80 iDilVnn   86 (257)
T d2rhca1          80 VDVLVNN   86 (257)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEec
Confidence            9988864

>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: "Helical backbone" metal receptor
family: Nitrogenase iron-molybdenum protein
domain: Nitrogenase iron-molybdenum protein, alpha chain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.87  E-value=1.3  Score=40.23  Aligned_cols=32  Identities=6%  Similarity=0.047  Sum_probs=28.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .||+.|.+++.....+++.++++|.+++.+.+
T Consensus       335 GKrv~i~~g~~~~~~~~~~l~elGmevv~~g~  366 (525)
T d1mioa_         335 GKTACLYVGGSRSHTYMNMLKSFGVDSLVAGF  366 (525)
T ss_dssp             TCEEEEEESSSHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCceEEecCchHHHHHHHHHHHcCCeEEEeee
Confidence            47899999998999999999999999998764

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.4  Score=31.81  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=29.2

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..+|||.| +|..|...++-++.+|++|+++...++
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            57799988 577899999999999999998865544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.59  E-value=0.27  Score=40.20  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+|++   .+|+.+++.|.+.|++|++.+.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            5889999954   48999999999999999887654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.53  E-value=0.33  Score=39.75  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=29.1

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|.+||+| ++.+|+.+++.|.+.|++|++++.+.
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            67899999 45689999999999999999987543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.31  E-value=0.25  Score=39.38  Aligned_cols=34  Identities=9%  Similarity=-0.016  Sum_probs=28.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHc--CCcEEEEecCCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEM--GIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~--G~~vi~v~~~~~  105 (313)
                      .||.|||+|+.|+..++.|.+.  |++|++++..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4899999999999999998775  789999865543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.27  E-value=0.25  Score=38.91  Aligned_cols=32  Identities=9%  Similarity=0.183  Sum_probs=29.0

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .-|+|||+|+.|+..+..+.++|.+|++++..
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            45999999999999999999999999999753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.25  E-value=0.26  Score=40.45  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .-|+|+|+|..|..++..|.++|++|++++..
T Consensus         4 yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            45999999999999999999999999999754

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.24  Score=37.84  Aligned_cols=30  Identities=13%  Similarity=0.148  Sum_probs=27.9

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      -|+|+|+|+.|+..+..+.++|.+|.+++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEE
Confidence            589999999999999999999999999964

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.11  E-value=0.19  Score=40.09  Aligned_cols=35  Identities=9%  Similarity=-0.036  Sum_probs=29.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcC-------CcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMG-------IPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G-------~~vi~v~~~~~  105 (313)
                      ..||+|+|+|+.|+..+..|.++|       ++|.+++..+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            368999999999999999999988       46888876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.26  Score=38.86  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=29.0

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .-|+|||+|+.|+..+..|.++|.+|.+++.+
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            45999999999999999999999999999643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.03  E-value=0.29  Score=39.64  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|+|||+| ++.+|+.+++.+.+.|++|++++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            58999999 56689999999999999999986544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.02  E-value=0.22  Score=37.49  Aligned_cols=31  Identities=6%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .||+|+|+|..|..++..|++ +.+|++++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            379999999999999999965 7799998643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=0.3  Score=35.98  Aligned_cols=33  Identities=9%  Similarity=0.272  Sum_probs=27.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHH----HHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTA----HEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al----~~~G~~vi~v~~~  103 (313)
                      .++++|+|+|.+|..++.++    ++.|.+|+++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            47899999999988888776    4579999998643

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=87.68  E-value=0.33  Score=41.29  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=28.9

Q ss_pred             cccccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEe
Q 021372           68 TCRQEKILVAN-RGEIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        68 ~~~~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~  101 (313)
                      .+..++|||+| +|.+|..+++.|-+.|++|+++.
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~v   42 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA   42 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            34478999999 66689999999999999998764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.62  E-value=0.24  Score=37.98  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=27.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEec
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYS  102 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~  102 (313)
                      .++|||+|+|..++.++.+|+++|+ ++.++..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5789999999999999999999998 4566543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.51  E-value=0.49  Score=39.91  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=28.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~   40 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLG   40 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            68899999 5558999999999999999988644

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.45  E-value=0.42  Score=39.18  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=28.0

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|++||+| ++.+|..+++.|.+.|++|++.+..
T Consensus         6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            57899999 5558999999999999999876543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.42  E-value=0.27  Score=39.43  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=29.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      |++||+| ++.+|+.+++.|.+.|++|++++.+.+
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            6899999 566899999999999999999875543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.40  E-value=0.24  Score=37.65  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=29.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +||.|+|-|.+|..+++.|.+.|++|++++.++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            469999999999999999999999999885443

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.36  E-value=0.39  Score=35.93  Aligned_cols=61  Identities=11%  Similarity=0.015  Sum_probs=42.0

Q ss_pred             ccEEEEE--cCCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVA--NRGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIi--g~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .+.++|+  |+|.+|..++..+.++|.+|.++...+....   .       ++       ......+.+..++.+++.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~---~-------~~-------~~~~~~~~~~l~~~GV~i~~  101 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY---M-------HF-------TLEYPNMMRRLHELHVEELG  101 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH---H-------HH-------TTCHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc---c-------cc-------hhHHHHHHHHHhhccceEEe
Confidence            4567776  7899999999999999999999965432111   1       11       13355677777777776554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.31  E-value=0.47  Score=37.46  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             ccccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           69 CRQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        69 ~~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      -..++|+|+|-|.+|..+++.++..|.+|+.++...
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            347899999999999999999999999999886443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.97  E-value=0.95  Score=37.16  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=29.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ..++|+|-|-|..|..+++.|.++|.+++.+.+
T Consensus        35 ~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          35 VGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            468999999999999999999999999998753

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.85  E-value=0.084  Score=42.28  Aligned_cols=28  Identities=18%  Similarity=0.219  Sum_probs=24.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEE
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVA   99 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~   99 (313)
                      +||+|+|+|..|+..+..|.+.|++|++
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceE
Confidence            4799999999999999999999987643

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.65  E-value=0.34  Score=38.02  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=29.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..-|+|+|+|+.|+..+..|.+.|.+|.+++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            456999999999999999999999999999643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.63  E-value=0.34  Score=40.39  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=29.5

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      --|||||+|..|+..+..|.+.|.+|++++..+
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            359999999999999999999999999996543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=86.59  E-value=0.3  Score=37.39  Aligned_cols=34  Identities=6%  Similarity=0.136  Sum_probs=31.4

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|+++|+|-|..|+.++++|+.+|.+|+++..||
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            6899999999999999999999999999996655

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.58  E-value=0.31  Score=38.45  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=29.7

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      |||.|+|.|..|+.++-.+.+.|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            579999999999999999999999999996543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.29  E-value=0.32  Score=40.92  Aligned_cols=33  Identities=9%  Similarity=0.131  Sum_probs=27.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHH-----HcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAH-----EMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~-----~~G~~vi~v~~~~  104 (313)
                      .-|+|+|+|+.|+.++..|.     +.|++|++++..+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            56999999999999998884     6799999996543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.20  E-value=0.5  Score=34.36  Aligned_cols=31  Identities=3%  Similarity=0.034  Sum_probs=25.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH-cCCcEEEEe
Q 021372           71 QEKILVANRGEIAVRVIRTAHE-MGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~-~G~~vi~v~  101 (313)
                      ..+|+|+|+|..|..+++++.. .|++++.+-
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fi   34 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFF   34 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEE
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEE
Confidence            4589999999999999987754 588877654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.19  E-value=0.37  Score=38.83  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .||||+| ++.+|+.+++.|.+.|++|++++.+..
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5799999 566899999999999999999876544

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.06  E-value=0.44  Score=37.08  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|-|.+|..+++.++..|.+|++++..
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~   74 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT   74 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cCceEEEeccccccccceeeeecccccccccccc
Confidence            4689999999999999999999999999998644

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.04  E-value=0.44  Score=37.44  Aligned_cols=31  Identities=29%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      -|+|+|+|+.|+..+..|.++|.+|.+++..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=85.98  E-value=0.47  Score=35.97  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             cEEEEEcCCHhHHH-HHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           72 EKILVANRGEIAVR-VIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        72 ~~ILIig~g~~a~~-v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .||.|+|.|..|.. .+.++++. ++++++++.++..   ...+++.+- +.  .   -+.+.+.+++    .++|+|+.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~---~~~~~~~~~-~~--~---~~~~~~~ll~----~~iD~V~I   68 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKV---LGTLATRYR-VS--A---TCTDYRDVLQ----YGVDAVMI   68 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHH---HHHHHHHTT-CC--C---CCSSTTGGGG----GCCSEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHH---HHHHHHhcc-cc--c---ccccHHHhcc----cccceecc
Confidence            58999999998865 67788776 5566655433221   122222211 10  0   1222333332    46999886


Q ss_pred             ccCcCcccHHHHHHHHHcCCcee
Q 021372          150 GYGFLAENAVFVEMCREHGINFI  172 (313)
Q Consensus       150 ~~g~~~e~~~~~~~l~~~gi~~~  172 (313)
                      ... .......+..+.+.|.+++
T Consensus        69 ~tp-~~~H~~~~~~al~~gk~V~   90 (167)
T d1xeaa1          69 HAA-TDVHSTLAAFFLHLGIPTF   90 (167)
T ss_dssp             CSC-GGGHHHHHHHHHHTTCCEE
T ss_pred             ccc-ccccccccccccccccccc
Confidence            542 1223455555557788775

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.91  E-value=0.59  Score=36.88  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=30.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      ..++|.|+|-|.+|..+++.|+..|.+|++++.
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   76 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP   76 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cceeeeeeecccccccccccccccceeeeccCC
Confidence            368999999999999999999999999999864

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.90  E-value=0.8  Score=37.14  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=44.0

Q ss_pred             cEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcch-h-h---hhhcCceEEccCCCCCCCcCCHHHHHHHHHhc--C
Q 021372           72 EKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDA-L-H---VKLADESVCIGEAPSSQSYLLIPNVLSAAISR--G  143 (313)
Q Consensus        72 ~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~-~-~---~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~--~  143 (313)
                      +.|||+| ++.+|+.+++.|.+.|++|++.+....... . .   .....+.+.+.  -+..+..+++.+.+.+.+.  +
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~--~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFG--GDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEE--CCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHHHHHHcCC
Confidence            3588999 555899999999999999988654322111 0 0   11122333232  1122233455555554443  5


Q ss_pred             CCEEeec
Q 021372          144 CTMLHPG  150 (313)
Q Consensus       144 id~vip~  150 (313)
                      +|.++..
T Consensus        80 iDiLVnn   86 (244)
T d1edoa_          80 IDVVVNN   86 (244)
T ss_dssp             CSEEEEC
T ss_pred             CCccccc
Confidence            9988854

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.86  E-value=0.55  Score=35.37  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.2

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAV  100 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v  100 (313)
                      .++|+|+|+|.+|...+..+.++|.+.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~v   74 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFL   74 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeE
Confidence            578999999999999999999999885543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=85.86  E-value=0.49  Score=37.90  Aligned_cols=118  Identities=11%  Similarity=0.023  Sum_probs=63.2

Q ss_pred             ccEEEEEcCCHhHH-HHHHHHHHc-CCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEe
Q 021372           71 QEKILVANRGEIAV-RVIRTAHEM-GIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLH  148 (313)
Q Consensus        71 ~~~ILIig~g~~a~-~v~~al~~~-G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vi  148 (313)
                      .-+|.|+|.|..+. .++.+++.. +++++.+. +.+.... ..++.++ .++ ......|.+.+++   +...++|+|+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~-d~~~~~a-~~~~~~~-~i~-~~~~~~~~d~~el---l~~~~iD~V~  105 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALV-SGNAEKA-KIVAAEY-GVD-PRKIYDYSNFDKI---AKDPKIDAVY  105 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEE-CSCHHHH-HHHHHHT-TCC-GGGEECSSSGGGG---GGCTTCCEEE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEe-cCCHHHH-HHHHHhh-ccc-cccccccCchhhh---cccccceeee
Confidence            45899999999986 466777765 78888665 3332211 1222211 010 0001113333333   3456799998


Q ss_pred             eccCcCcccHHHHHHHHHcCCceeC-----CCHHHHHHhCCHHHHHHHHHHCCCCCCCC
Q 021372          149 PGYGFLAENAVFVEMCREHGINFIG-----PNPDSIRIMGDKSTARETMKNAGVPTVPG  202 (313)
Q Consensus       149 p~~g~~~e~~~~~~~l~~~gi~~~g-----~~~~~i~~~~DK~~~~~~l~~~Gip~p~~  202 (313)
                      .... ...+..++..+.+.|++++.     .+.+.+      ..+.++.++.|+.+--.
T Consensus       106 I~tp-~~~H~~~~~~al~~gk~v~~EKPla~~~~e~------~~l~~~a~~~~~~~~v~  157 (221)
T d1h6da1         106 IILP-NSLHAEFAIRAFKAGKHVMCEKPMATSVADC------QRMIDAAKAANKKLMIG  157 (221)
T ss_dssp             ECSC-GGGHHHHHHHHHHTTCEEEECSSCCSSHHHH------HHHHHHHHHHTCCEEEC
T ss_pred             eccc-hhhhhhHHHHhhhcchhhhcCCCccCCHHHH------HHHHHHHHhcCCcEEEe
Confidence            6542 22345555555678988853     222222      24456667777766433

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=85.66  E-value=0.47  Score=37.73  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=29.0

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .-|+|||+|+.|+..+..|.++|.+|.+++..
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~   38 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERY   38 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            45999999999999999999999999999643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.49  E-value=0.39  Score=39.83  Aligned_cols=31  Identities=10%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCC-cEEEEecC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGI-PCVAVYST  103 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~  103 (313)
                      +|+|||+|..|..++..|.++|+ +|++++.+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            69999999999999999999997 58898654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.49  E-value=0.69  Score=32.85  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=40.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcC---CcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEE
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMG---IPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTML  147 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G---~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~v  147 (313)
                      .++++|+|+|.+|..++..++++|   .+|+++...+...    +..|             ..-.+.+.+..++++++..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL----~~~d-------------~~~~~~l~~~l~~~GV~v~   82 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL----RGFD-------------HTLREELTKQLTANGIQIL   82 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS----TTSC-------------HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh----cccc-------------hHHHHHHHHHHHhcCcEEE
Confidence            478999999999999997776665   5688886432110    0011             1124566777777888776


Q ss_pred             e
Q 021372          148 H  148 (313)
Q Consensus       148 i  148 (313)
                      .
T Consensus        83 ~   83 (117)
T d1aoga2          83 T   83 (117)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.39  E-value=0.45  Score=39.48  Aligned_cols=36  Identities=11%  Similarity=0.112  Sum_probs=30.0

Q ss_pred             ccccccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEec
Q 021372           67 VTCRQEKILVANRG---EIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        67 ~~~~~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .....|++||+|++   .+|+.+++.|.+.|.+|++.+.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            33447899999964   5899999999999999988764

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.99  E-value=0.38  Score=36.93  Aligned_cols=33  Identities=15%  Similarity=0.147  Sum_probs=29.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      +||.|+|-|..|..+++.|.+.|++|.+++.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999986443

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.94  E-value=1.5  Score=33.49  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             EEEEEcCCH-hHHHHHHHHHHcCCcEEEEecC
Q 021372           73 KILVANRGE-IAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        73 ~ILIig~g~-~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .|+|+.-|. ..+.++++++++|+++.++..+
T Consensus         2 mI~iiD~g~~~~~~i~~~L~~~G~~~~v~~~~   33 (188)
T d1wl8a1           2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNT   33 (188)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHTTCEEEEEETT
T ss_pred             EEEEEECCCcHHHHHHHHHHHCCCeEEEEeCC
Confidence            388888554 4678999999999999988543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.75  E-value=0.52  Score=36.91  Aligned_cols=32  Identities=9%  Similarity=0.122  Sum_probs=28.9

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      .-|+|||+|+.|+..+..|.+.|.+|.+++..
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            45999999999999999999999999999743

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=84.67  E-value=0.51  Score=36.19  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      +.+|.|+|-|.+|..+++.|.+.|++|++++.++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            46799999999999999999999999999865543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=84.65  E-value=0.48  Score=39.84  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=27.8

Q ss_pred             EEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           74 ILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        74 ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      |||+|+|..|+..+-.|.+.|.+|+++...
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            999999999999999999999999999644

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.49  E-value=0.62  Score=37.63  Aligned_cols=36  Identities=6%  Similarity=0.003  Sum_probs=30.6

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCc
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDK  106 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~  106 (313)
                      .|.+||+| ++.+|..+++.|.+.|++|++++.+.+.
T Consensus         5 GKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           5 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            58899999 5558999999999999999999765543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=84.48  E-value=0.55  Score=36.28  Aligned_cols=35  Identities=6%  Similarity=0.082  Sum_probs=28.5

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEE-EEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCV-AVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi-~v~~~~~  105 (313)
                      .++|||+|+|..++.++.++.++|.+-+ +++.++.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            5899999999999999999999999655 4444433

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.31  E-value=1  Score=36.35  Aligned_cols=77  Identities=9%  Similarity=-0.037  Sum_probs=42.3

Q ss_pred             EEEEEc-CCHhHHHHHHHHHHcCCc-------EEEEecCCCcchhhh-hh---cCceEEccCCCCCCCcCCHHHHHHHHH
Q 021372           73 KILVAN-RGEIAVRVIRTAHEMGIP-------CVAVYSTIDKDALHV-KL---ADESVCIGEAPSSQSYLLIPNVLSAAI  140 (313)
Q Consensus        73 ~ILIig-~g~~a~~v~~al~~~G~~-------vi~v~~~~~~~~~~~-~~---ad~~~~v~~~~~~~~~~~~~~l~~~~~  140 (313)
                      .|||+| ++.+|+.+++.|.+.|++       |++++.+........ .+   ......+.  -+..+...++.+.+.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~--~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT--ADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEE--CCTTSHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE--ecCCCHHHHHHHHHHHH
Confidence            478999 455899999999999998       566544332211111 11   11222221  11222334555555554


Q ss_pred             hc--CCCEEeecc
Q 021372          141 SR--GCTMLHPGY  151 (313)
Q Consensus       141 ~~--~id~vip~~  151 (313)
                      +.  ++|.++..-
T Consensus        81 ~~~g~iDilvnnA   93 (240)
T d2bd0a1          81 ERYGHIDCLVNNA   93 (240)
T ss_dssp             HHTSCCSEEEECC
T ss_pred             HHcCCcceeeccc
Confidence            43  599888643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=84.26  E-value=0.74  Score=36.10  Aligned_cols=35  Identities=17%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      ..++|.|+|-|.+|..+++.++..|.+|+..+...
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   82 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL   82 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccCcc
Confidence            36899999999999999999999999999886543

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=5.1  Score=29.75  Aligned_cols=112  Identities=8%  Similarity=0.048  Sum_probs=65.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHc--CCcEEEEecCCCcchh---hhhhcCceEEccCC--------------CCCCCcC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEM--GIPCVAVYSTIDKDAL---HVKLADESVCIGEA--------------PSSQSYL  130 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~--G~~vi~v~~~~~~~~~---~~~~ad~~~~v~~~--------------~~~~~~~  130 (313)
                      ||+|.|+| .|.+|...++-.++.  .++|+.+....+....   ...+..+.+.+...              ....-+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            57899999 777888888877776  6888888766653322   22333444434210              0011122


Q ss_pred             CHHHHHHHHHhcCCCEEeeccCcCcccHHHHHHHHHcCCceeCCCHHHHHHhC
Q 021372          131 LIPNVLSAAISRGCTMLHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRIMG  183 (313)
Q Consensus       131 ~~~~l~~~~~~~~id~vip~~g~~~e~~~~~~~l~~~gi~~~g~~~~~i~~~~  183 (313)
                      ..+.+.+++...+.|.|+....-..-......++ +.|..+.-.+-|++-...
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~ai-k~gk~iaLANKEslV~aG  132 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAI-RAGKTILLANKDMRTPIA  132 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHH-HTTCEEEECCHCTHHHHH
T ss_pred             ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHH-hcCCeEEEEccHHHHhHH
Confidence            4567777777778999887642111112223333 567777657777766655

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.79  E-value=0.49  Score=35.38  Aligned_cols=32  Identities=13%  Similarity=0.096  Sum_probs=26.8

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcC-CcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMG-IPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G-~~vi~v~~~  103 (313)
                      +||.++|.|.+|..+++.+.+.| +++++.+.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            57999999999999999988877 788777443

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.49  E-value=0.62  Score=37.49  Aligned_cols=69  Identities=10%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCCEEee
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHP  149 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip  149 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++.+.+.+.   ......+.+..|  .    ...++.+.+..  -++|.++.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~---l~~~~~~~~~~D--v----~~~~~~~~~~~--g~iD~lVn   72 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL---LKRSGHRYVVCD--L----RKDLDLLFEKV--KEVDILVL   72 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHTCSEEEECC--T----TTCHHHHHHHS--CCCSEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHhcCCcEEEcc--h----HHHHHHHHHHh--CCCcEEEe
Confidence            58899999 4558999999999999999998654321   123344444332  1    12244444422  35998886


Q ss_pred             c
Q 021372          150 G  150 (313)
Q Consensus       150 ~  150 (313)
                      .
T Consensus        73 n   73 (234)
T d1o5ia_          73 N   73 (234)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.37  E-value=0.52  Score=36.40  Aligned_cols=31  Identities=6%  Similarity=-0.025  Sum_probs=28.6

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      |||.|+|+|..|..++..|.+.|++|.++..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            5899999999999999999999999999854

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.19  E-value=0.49  Score=38.93  Aligned_cols=34  Identities=6%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHH-cCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHE-MGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~-~G~~vi~v~~~~  104 (313)
                      -.-|+|+|+|+.|+..+..|.+ .|++|.+++..+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            3459999999999999988765 699999998654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.04  E-value=0.79  Score=36.17  Aligned_cols=34  Identities=15%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCc--EEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIP--CVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~--vi~v~~~~  104 (313)
                      ...++|+|+|..|..++.+|+++|..  |++++.++
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            56799999999999999999998875  77776544

>d1gsaa1 c.30.1.3 (A:1-122) Prokaryotic glutathione synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: Prokaryotic glutathione synthetase, N-terminal domain
domain: Prokaryotic glutathione synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=0.54  Score=34.10  Aligned_cols=97  Identities=11%  Similarity=0.026  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHcCCcEEEEecCCCcchhhhhhcCc-eEEccCCCCCCCcCCHHHHHHHHHhcCCCEEeeccC--cCccc-
Q 021372           82 IAVRVIRTAHEMGIPCVAVYSTIDKDALHVKLADE-SVCIGEAPSSQSYLLIPNVLSAAISRGCTMLHPGYG--FLAEN-  157 (313)
Q Consensus        82 ~a~~v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~-~~~v~~~~~~~~~~~~~~l~~~~~~~~id~vip~~g--~~~e~-  157 (313)
                      +...+++++.++|++|..+....-........+.. .+.+. .....-|...+. .. ..-..+|+|+.--+  +..+. 
T Consensus        20 TT~~Lm~eAq~Rg~~v~~~~~~dL~~~~~~v~a~~~~v~~~-~~~~~~~~~~~~-~~-~~L~~fd~i~mRkDPPfd~~Yl   96 (122)
T d1gsaa1          20 SSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVK-QNYEEWFSFVGE-QD-LPLADLDVILMRKDPPFDTEFI   96 (122)
T ss_dssp             HHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEEC-SCSSCCEEEEEE-EE-EEGGGSSEEEECCCCCCCHHHH
T ss_pred             hHHHHHHHHHHCCCeEEEEecCceEEeCCcEEEEEeecccc-ccCccceeeeee-EE-cccccccEEEEecCCCCcHHHH
Confidence            48899999999999999885433222211111111 11111 111111100000 00 01135888886543  11111 


Q ss_pred             --HHHHHHHHHcCCceeCCCHHHHHHh
Q 021372          158 --AVFVEMCREHGINFIGPNPDSIRIM  182 (313)
Q Consensus       158 --~~~~~~l~~~gi~~~g~~~~~i~~~  182 (313)
                        ..+.+.+++.|..++ +++.+++.|
T Consensus        97 ~~T~lL~~~~~~g~~Vi-N~P~~lRnc  122 (122)
T d1gsaa1          97 YATYILERAEEKGTLIV-NKPQSLRDC  122 (122)
T ss_dssp             HHHHHHHHHHHTTCEEE-SCHHHHHHC
T ss_pred             HHHHHHHhhhhcCCEEE-cCcHHhcCC
Confidence              246677778899998 899998765

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=82.99  E-value=0.85  Score=35.56  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             ccEEEEEcCC-HhHHHHHHHHHHcCCcEEEEe
Q 021372           71 QEKILVANRG-EIAVRVIRTAHEMGIPCVAVY  101 (313)
Q Consensus        71 ~~~ILIig~g-~~a~~v~~al~~~G~~vi~v~  101 (313)
                      |+||||+..| .....+++.++++|+++.++-
T Consensus         1 m~ki~iiD~g~~~~~~i~r~l~~lg~~~~i~~   32 (196)
T d2a9va1           1 MLKIYVVDNGGQWTHREWRVLRELGVDTKIVP   32 (196)
T ss_dssp             CCBEEEEEESCCTTCHHHHHHHHTTCBCCEEE
T ss_pred             CCEEEEEECCCcHHHHHHHHHHHCCCeEEEEe
Confidence            5788888844 346788999999999988774

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.99  E-value=0.54  Score=38.70  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=29.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+| ++.+|+.+++.|.+.|++|++++.+.+
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            58999999 455899999999999999999976543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=82.95  E-value=0.54  Score=39.43  Aligned_cols=33  Identities=9%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .-|+|+|+|..|+..+..|.+.|++|+++...+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            349999999999999999999999999997543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.72  E-value=0.54  Score=35.23  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      +||.|+|.|.+|..+++.+.+.|+++++.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            47999999999999999999999999887543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.40  E-value=0.53  Score=37.39  Aligned_cols=31  Identities=6%  Similarity=0.104  Sum_probs=28.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEec
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~  102 (313)
                      .-|+|||+|+.|+..+..|.++|.+|.+++.
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCCCEEEECC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3589999999999999999999999999964

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.22  E-value=0.73  Score=37.46  Aligned_cols=36  Identities=28%  Similarity=0.239  Sum_probs=29.4

Q ss_pred             cccEEEEEcC-C--HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           70 RQEKILVANR-G--EIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        70 ~~~~ILIig~-g--~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      ..|++||+|+ |  .+|+.+++.|.+.|.+|++.+.+..
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            4688999994 3  3899999999999999998865543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.08  E-value=0.74  Score=35.94  Aligned_cols=30  Identities=10%  Similarity=0.165  Sum_probs=24.9

Q ss_pred             ccEEEEEc-CCHhHHHHHHHHHHcCCcEEEE
Q 021372           71 QEKILVAN-RGEIAVRVIRTAHEMGIPCVAV  100 (313)
Q Consensus        71 ~~~ILIig-~g~~a~~v~~al~~~G~~vi~v  100 (313)
                      .|||||+| .|.+|..+++.|.+.|+.+.++
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            48999999 5889999999999999854433

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=81.96  E-value=4.4  Score=29.50  Aligned_cols=55  Identities=11%  Similarity=0.088  Sum_probs=36.6

Q ss_pred             ccEEEEEc-CC---HhHHH-HHHHHHHcCCcEEEEecCCCcchhhhhhcCceEEccCCCCCCCcCCHHHHHHHHHhcCCC
Q 021372           71 QEKILVAN-RG---EIAVR-VIRTAHEMGIPCVAVYSTIDKDALHVKLADESVCIGEAPSSQSYLLIPNVLSAAISRGCT  145 (313)
Q Consensus        71 ~~~ILIig-~g---~~a~~-v~~al~~~G~~vi~v~~~~~~~~~~~~~ad~~~~v~~~~~~~~~~~~~~l~~~~~~~~id  145 (313)
                      ++|||+.. .+   .+|.. +...|+..||+|+-+..+                +          ..+.+++.++++++|
T Consensus         3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~----------------~----------p~e~iv~a~~~~~~d   56 (137)
T d1ccwa_           3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL----------------S----------PQELFIKAAIETKAD   56 (137)
T ss_dssp             CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE----------------E----------CHHHHHHHHHHHTCS
T ss_pred             CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccc----------------c----------CHHHHHHHHHhcCCC
Confidence            46777754 22   24554 556778899999987532                2          156778888888888


Q ss_pred             EEeecc
Q 021372          146 MLHPGY  151 (313)
Q Consensus       146 ~vip~~  151 (313)
                      +|....
T Consensus        57 ~v~lS~   62 (137)
T d1ccwa_          57 AILVSS   62 (137)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            877543

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=81.81  E-value=2.9  Score=32.60  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=29.0

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .+||+++|++..+..++++|.+.|+++..|-+.+
T Consensus         3 ~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~   36 (206)
T d1fmta2           3 SLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQP   36 (206)
T ss_dssp             CCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            4679999999999999999999999988766544

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.77  E-value=0.73  Score=37.28  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             ccEEEEEcCC---HhHHHHHHHHHHcCCcEEEEecCCC
Q 021372           71 QEKILVANRG---EIAVRVIRTAHEMGIPCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g---~~a~~v~~al~~~G~~vi~v~~~~~  105 (313)
                      .|++||+|++   .+|..+++.|.+.|++|++.+.+..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            6889999965   3789999999999999998876543

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.59  E-value=3.2  Score=31.55  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=28.3

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHc-CCcEEEEec
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEM-GIPCVAVYS  102 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~-G~~vi~v~~  102 (313)
                      |+.||.|.|-|.+|+.++|++.+. .++++.+..
T Consensus         1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEec
Confidence            678999999999999999999875 578887764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.52  E-value=0.85  Score=36.97  Aligned_cols=31  Identities=16%  Similarity=0.180  Sum_probs=28.3

Q ss_pred             EEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           73 KILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        73 ~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      -++|+|+|+.|+..+..|.++|.+|.+++.+
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            3899999999999999999999999999753

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.51  E-value=0.69  Score=38.78  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.4

Q ss_pred             cEEEEEcCCHhHHHHHHHHHHcCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .-|+|+|+|..|+..+..|.+.|.+|++++..+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            459999999999999999999999999996543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.30  E-value=0.8  Score=37.41  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=29.5

Q ss_pred             ccEEEEEcC-C--HhHHHHHHHHHHcCCcEEEEecCC
Q 021372           71 QEKILVANR-G--EIAVRVIRTAHEMGIPCVAVYSTI  104 (313)
Q Consensus        71 ~~~ILIig~-g--~~a~~v~~al~~~G~~vi~v~~~~  104 (313)
                      .|++||+|+ |  .+|..+++.|.+.|++|++++.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            688999995 3  489999999999999999998654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.09  E-value=4.8  Score=30.77  Aligned_cols=34  Identities=18%  Similarity=0.165  Sum_probs=30.8

Q ss_pred             cccEEEEEcCCHhHHHHHHHHHHcCCcEEEEecC
Q 021372           70 RQEKILVANRGEIAVRVIRTAHEMGIPCVAVYST  103 (313)
Q Consensus        70 ~~~~ILIig~g~~a~~v~~al~~~G~~vi~v~~~  103 (313)
                      ..++|+|+|-|.+|..+++.++..|.+|+..+..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE   76 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeecccc
Confidence            4689999999999999999999999999998644

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=80.93  E-value=1.2  Score=33.51  Aligned_cols=35  Identities=11%  Similarity=0.004  Sum_probs=28.3

Q ss_pred             ccEEEEEcCCHhHHHHHHHHHHcCC-cEEEEecCCC
Q 021372           71 QEKILVANRGEIAVRVIRTAHEMGI-PCVAVYSTID  105 (313)
Q Consensus        71 ~~~ILIig~g~~a~~v~~al~~~G~-~vi~v~~~~~  105 (313)
                      ++||.|+|+|..|..++..+...|+ +++++|.+.+
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            6899999999999888888888776 6777765543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.15  E-value=1.6  Score=37.70  Aligned_cols=33  Identities=6%  Similarity=0.162  Sum_probs=27.3

Q ss_pred             cEEEEEcCCHhHHHHHHHHHH------cCCcEEEEecCC
Q 021372           72 EKILVANRGEIAVRVIRTAHE------MGIPCVAVYSTI  104 (313)
Q Consensus        72 ~~ILIig~g~~a~~v~~al~~------~G~~vi~v~~~~  104 (313)
                      --|+|+|+|+.|...+..|.+      .|++|.+++...
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            469999999998888877765      899999996543

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.03  E-value=5.6  Score=27.64  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=24.0

Q ss_pred             cEEEEEcCCHh-HHHHHHHHHHcCCcEEEEec
Q 021372           72 EKILVANRGEI-AVRVIRTAHEMGIPCVAVYS  102 (313)
Q Consensus        72 ~~ILIig~g~~-a~~v~~al~~~G~~vi~v~~  102 (313)
                      |||||+.-.+. ...+.+.|++.||+|..+.+
T Consensus         1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a~~   32 (117)
T d2a9pa1           1 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFN   32 (117)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCEEEEESS
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECC
Confidence            68999997775 45566888999999887643