Citrus Sinensis ID: 021384

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDNERERSLIRSNMVPGQVVSRALIQRSLILCAIC
Secondary Structure (PSIPRED)
ccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEEccccEEEEEccccEEEEEEEcccEEEEcccccccEEEEEEEccccEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccEEEEEEEEEEEccEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccccEEEEHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEEcccccHHHcccccccccccccHcHccHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccHHHcccEEEEEEEEEcccccEEEEEccccEEEEEEcccccccccccccccEEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHccccEEEcHHHHHHcccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgslqgpvfcpavrarqgglyntvpstgpvmkarffrselwgfkgltaVKTKVGVFTrqqnarkckivqctfssssngngsmaenfnendedfvNSSVVEAVevksgadgfmikmrdgrhlrcvhnnpqgghlpdyaphpaIVLKmedgtglllPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTkvgnetecvsfdlrpsdainIAVRCKVPIqvnkylaysdgmrviesgklsthspgsdgllftelDNERERSLIrsnmvpgqVVSRALIQRSLILCAIC
Flexible Loop (DISEMBL)
MGSLQGPVFCPAvrarqgglyntvpstgpvMKARFFRSELWGFKGLTAVKTKVGvftrqqnarkckivqctfssssngngSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGklsthspgsdgLLFTELDNERERSLirsnmvpgqvvsraliqRSLILCAIC
Low Complexity Region (SEG)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAenfnendedfVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDNERERSLIRSNMVPGQVVSRALIQRSLILCAIC
Disordered region (IsUnstruct)
*******VFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTF*************************VVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE**************LF***********IRSNMVPGQVVSRALIQRSLILCAI*
Disordered Region (DISOPRED)
****QGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTK**************************************EDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLM*********RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM***************************************QVVSRALIQRSLILCAIC
Disordered Region (DISEMBL)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDNERERSLIRSNMVPGQVVSRALIQRSLILCAIC
Disordered Region (DISPRO)
***LQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSS**************NDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES***********GLLFTELDNERERSLIRSNMVPGQVVSRALIQRSLILCAIC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDNERERSLIRSNMVPGQVVSRALIQRSLILCAIC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9FWS6	325	Bifunctional nuclease 1 O	yes	no	0.865	0.833	0.759	1e-120
Q93VH2	329	Bifunctional nuclease 2 O	no	no	0.926	0.881	0.683	1e-116
Q6YZM6	325	Bifunctional nuclease 2 O	yes	no	0.869	0.836	0.576	7e-89
Q09LL3	331	Bifunctional nuclease OS=	N/A	no	0.888	0.839	0.496	3e-67
Q5N8J3	331	Bifunctional nuclease 1 O	no	no	0.888	0.839	0.496	7e-67
B8A8D2	331	Bifunctional nuclease 1 O	N/A	no	0.888	0.839	0.496	4e-66
Q50604	164	Uncharacterized protein R	yes	no	0.361	0.689	0.225	0.0002

>sp|Q9FWS6|BBD1_ARATH Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 238/283 (84%), Gaps = 12/283 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQD 274

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q93VH2|BBD2_ARATH Bifunctional nuclease 2 OS=Arabidopsis thaliana GN=BBD2 PE=2 SV=1

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/300 (68%), Positives = 241/300 (80%), Gaps = 10/300 (3%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + R+ K ++C FSS S+G GS AENFNENDED+V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct: 59  HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct: 119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct: 179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD--------NERERSLIRSNM 292
           KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD        + +E  L+R+ M
Sbjct: 239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVRNMM 298

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6YZM6|BBD2_ORYSJ Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica GN=BBD2 PE=2 SV=1

 Score =  327 bits (838), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 162/281 (57%), Positives = 219/281 (77%), Gaps = 9/281 (3%)

Query: 3   SLQGPVFCPAVRARQ---GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           +++GP+ C AV   +     + N++  +G +  A  F   +  ++ +T + + +    ++
Sbjct: 2   AMEGPILCRAVMQAKLPVTMISNSLTKSGQLGTA--FLGCVCKYRNITRLISPIYQPAQK 59

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
             A  C     +FSSSS+GNG MA NF+E+DED+VNS+V+EAVEV+SGA+G++IKMRDG+
Sbjct: 60  NFATVCG----SFSSSSDGNGYMAGNFSESDEDYVNSTVLEAVEVRSGAEGYVIKMRDGK 115

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           +LRCVHNN QG ++P+ AP PAIVL++EDG+  LLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 116 NLRCVHNNSQGRNIPESAPQPAIVLRIEDGSETLLPIIVLEMPSVLLMAAIRNVHIARPT 175

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           +YQVVKEMI+KMGYEV+LVR+ KR+ EAY A+L+LTKVG+ TE ++FDLRPSDAINIAVR
Sbjct: 176 IYQVVKEMIDKMGYEVKLVRINKRIQEAYCAELFLTKVGDHTESITFDLRPSDAINIAVR 235

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           CKVPIQV++ LAYSDG+R +E  +++  +  SDGLLFTELD
Sbjct: 236 CKVPIQVHRSLAYSDGIRSVEPARMAIAAGMSDGLLFTELD 276

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q09LL3|BBD_ORYMI Bifunctional nuclease OS=Oryza minuta GN=BBD PE=2 SV=1

 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/284 (49%), Positives = 201/284 (70%), Gaps = 6/284 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVYCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLD 282

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza minuta (taxid: 63629)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5N8J3|BBD1_ORYSJ Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica GN=BBD1 PE=2 SV=1

 Score =  254 bits (648), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 141/284 (49%), Positives = 201/284 (70%), Gaps = 6/284 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           A RCKVPIQVN+ +AY++G++V++     ++   SD   +T LD
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQYTRLD 282

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B8A8D2|BBD1_ORYSI Bifunctional nuclease 1 OS=Oryza sativa subsp. indica GN=BBD1 PE=3 SV=1

 Score =  251 bits (642), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 141/284 (49%), Positives = 200/284 (70%), Gaps = 6/284 (2%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKG--LTAVKTKVGVFTR 58
           M  + GPV         G L +    +G +++    R    G +G    A +   G F  
Sbjct: 1   MEIINGPVLPRYAAPATGALTSDAKISGQLLRRVHLRRRACGLQGDHYRAARRFFG-FPS 59

Query: 59  QQNARKCKI--VQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
           +++AR   +  V C++ SSS+G+G+ A +++ + E+FVNSSV+EAVE++S +DGF+IKMR
Sbjct: 60  ERHARSGWVWPVCCSYGSSSDGDGAAAADYDASGEEFVNSSVMEAVELRSVSDGFVIKMR 119

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DG++LRCV NNP+   L D APH AIVLKMEDG+ LLLPIIV+E PS++L+AA+RN++I 
Sbjct: 120 DGKNLRCVQNNPRVLRLRDSAPHHAIVLKMEDGSDLLLPIIVMETPSIMLLAALRNIRIP 179

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+Y VVKEM E+MGY VRLVR+T+ VH+AY+++LYL K+GNE E +S DL+PSDAINI
Sbjct: 180 RPTIYNVVKEMTERMGYAVRLVRITEMVHDAYYSRLYLAKIGNEEETISLDLKPSDAINI 239

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           A RCKVPIQVN+ +AY++G++V++     ++   SD    T LD
Sbjct: 240 AFRCKVPIQVNRRIAYNNGLKVVQPTPSESYV-SSDQFQCTRLD 282

Bifunctional nuclease with both RNase and DNase activites. Involved in basal defense response. Participates in abscisic acid-derived callose deposition following infection by a necrotrophic pathogen.

Oryza sativa subsp. indica (taxid: 39946)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q50604|Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 OS=Mycobacterium tuberculosis GN=Rv1829 PE=4 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 139 HPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLV 198
            P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ V
Sbjct: 17  QPVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEV 75

Query: 199 RVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258
           R+       ++A L   +       +    RPSD++ IA+R  VPI V + +    G+ +
Sbjct: 76  RIVDLQEGTFYADLIFDR------NIKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
224062099	326	predicted protein [Populus trichocarpa]	0.878	0.843	0.832	1e-134
359492154	327	PREDICTED: uncharacterized protein LOC10	0.891	0.853	0.810	1e-132
255538728	327	conserved hypothetical protein [Ricinus	0.881	0.844	0.846	1e-132
302142539	355	unnamed protein product [Vitis vinifera]	0.891	0.785	0.810	1e-132
224085706	328	predicted protein [Populus trichocarpa]	0.942	0.899	0.747	1e-126
449511603	327	PREDICTED: bifunctional nuclease 1-like	0.952	0.911	0.704	1e-123
255635435	328	unknown [Glycine max]	0.881	0.841	0.779	1e-122
449460235	327	PREDICTED: bifunctional nuclease 1-like	0.952	0.911	0.701	1e-122
15222221	325	bifunctional nuclease in basal defense r	0.865	0.833	0.759	1e-118
297842281	324	hypothetical protein ARALYDRAFT_476684 [	0.859	0.830	0.757	1e-118

>gi|224062099|ref|XP_002300754.1| predicted protein [Populus trichocarpa] gi|222842480|gb|EEE80027.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/280 (83%), Positives = 253/280 (90%), Gaps = 5/280 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CP VRA+Q G +   P TGP++KAR  RSELWGFKG    KTKVG+ +RQ 
Sbjct: 1   MVSLQGPVICPTVRAKQAGKH-AFPMTGPLVKARLVRSELWGFKGY---KTKVGLTSRQL 56

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C  VQC+ SSSS+GNGS AENFNENDED+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 57  KARRCNTVQCSLSSSSDGNGSTAENFNENDEDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 116

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 117 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 176

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVK+M+EKMG+EV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 177 YQVVKDMVEKMGFEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 236

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           KVPIQVNKYLAYSDGMRVIESGK    SP SDG+LFTELD
Sbjct: 237 KVPIQVNKYLAYSDGMRVIESGK-PIQSPASDGILFTELD 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492154|ref|XP_003634371.1| PREDICTED: uncharacterized protein LOC100855103 [Vitis vinifera]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/280 (81%), Positives = 249/280 (88%), Gaps = 1/280 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 1   MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 120 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 180 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD
Sbjct: 240 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELD 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538728|ref|XP_002510429.1| conserved hypothetical protein [Ricinus communis] gi|223551130|gb|EEF52616.1| conserved hypothetical protein [Ricinus communis]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/280 (84%), Positives = 252/280 (90%), Gaps = 4/280 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           M SLQGPV CPAVRA+Q G Y T+P   P+ KAR  RS LW FKG++  KTK+  F+ QQ
Sbjct: 1   MTSLQGPVICPAVRAKQAGTY-TLPLNVPLFKARLVRSGLWRFKGISDYKTKLTGFSPQQ 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR   + QC  SSSSNGNG+ AENFN NDED+V+SSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 60  -ARNTTL-QCCLSSSSNGNGNTAENFNVNDEDYVHSSVVEAVEVKSGADGFMIKMRDGRH 117

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           +RCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 118 VRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 177

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNET+CVSFDLRPSDAINIAVRC
Sbjct: 178 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETQCVSFDLRPSDAINIAVRC 237

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           KVPIQVNKYLAYSDGMRVIESGK+ THSPGSDGLLFTELD
Sbjct: 238 KVPIQVNKYLAYSDGMRVIESGKI-THSPGSDGLLFTELD 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142539|emb|CBI19742.3| unnamed protein product [Vitis vinifera]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/280 (81%), Positives = 249/280 (88%), Gaps = 1/280 (0%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MG+LQGPV CP VRA++ G+Y T+P + P+ K + FRS  WGF+G    +TK G    Q 
Sbjct: 29  MGTLQGPVICPTVRAKEAGVY-TLPVSLPLKKTKIFRSGFWGFRGNCGGRTKAGSVPHQL 87

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
           + RKCK +QC+FSSSS+GNGSMAENFNENDED+VNSSVVEAVEVKSGADGFMIKMRDGRH
Sbjct: 88  HTRKCKTLQCSFSSSSDGNGSMAENFNENDEDYVNSSVVEAVEVKSGADGFMIKMRDGRH 147

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGH+PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPTL
Sbjct: 148 LRCVHNNPQGGHMPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTL 207

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQV+KEMI+KMGY V+LVRVTKRVHEAYFAQLYLTKVGNE E VSFDLRPSDAINIAVRC
Sbjct: 208 YQVMKEMIDKMGYAVKLVRVTKRVHEAYFAQLYLTKVGNEKESVSFDLRPSDAINIAVRC 267

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           KVPIQVNKYLAYSDGMRVIES K+S  +  SDGLLFTELD
Sbjct: 268 KVPIQVNKYLAYSDGMRVIESAKVSVQASSSDGLLFTELD 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085706|ref|XP_002307674.1| predicted protein [Populus trichocarpa] gi|222857123|gb|EEE94670.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/309 (74%), Positives = 259/309 (83%), Gaps = 14/309 (4%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV  PAVRA+Q G Y + P TGP++K    RSEL GFKGL+  K+KV + +RQ 
Sbjct: 1   MGSLQGPVIYPAVRAKQAGTY-SFPMTGPLVKGWLIRSELRGFKGLSGCKSKVVLTSRQL 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
            AR+C +VQC+ SSSS+GNGS AENFNEN  D+VNSSVVEAVEVKSG+DGF+IKMRDGRH
Sbjct: 60  KARRCSVVQCSLSSSSDGNGSTAENFNENHGDYVNSSVVEAVEVKSGSDGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNPQGGHLPD APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNVQIARPT+
Sbjct: 120 LRCVHNNPQGGHLPDNAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEM+EKMGYEV+LVRVTKRVHEAYFAQLYLTK+GNETECVSFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMVEKMGYEVKLVRVTKRVHEAYFAQLYLTKIGNETECVSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHS-PGSDGLLFTELD--------NERERSLIRSN 291
           KVPIQVNKYLAYSDGMRV+    L  +S P  +GLLFTELD        + +E  L+R N
Sbjct: 240 KVPIQVNKYLAYSDGMRVMN---LKANSVPCFNGLLFTELDRPTGQPCLDTKEFDLVR-N 295

Query: 292 MVPGQVVSR 300
           M+   +  R
Sbjct: 296 MLTAAIEER 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511603|ref|XP_004164003.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 254/308 (82%), Gaps = 10/308 (3%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD--------NERERSLIRSNM 292
           +VPIQVNKYLAYSDGMRV+ESGKLST +  +DGLLFTELD          +E +L+R NM
Sbjct: 240 QVPIQVNKYLAYSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVR-NM 298

Query: 293 VPGQVVSR 300
           +   V  R
Sbjct: 299 LIAAVEER 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635435|gb|ACU18070.1| unknown [Glycine max]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/281 (77%), Positives = 238/281 (84%), Gaps = 5/281 (1%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPV-MKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
           M S+QGPV CP+VRA+Q G + ++P  G V M  R  RSE WG  G    K K G  +  
Sbjct: 1   MSSVQGPVVCPSVRAKQVG-FCSIPMIGAVKMNVRRIRSEFWGLNG---AKAKPGFLSCH 56

Query: 60  QNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGR 119
            N RKCK V CTF+S SN +GS A+NFNE DED+V SSV+EAVEVKSGADGF+IKMRDGR
Sbjct: 57  INTRKCKTVHCTFNSPSNDSGSTADNFNEKDEDYVISSVIEAVEVKSGADGFIIKMRDGR 116

Query: 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPT 179
           HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT
Sbjct: 117 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAIRNVPIARPT 176

Query: 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVR 239
           LYQVVKEMI+KMGYEV+ VRVT+RVHEAYFAQLYLTKVGN+ E VSFDLRPSDAINIAVR
Sbjct: 177 LYQVVKEMIDKMGYEVKFVRVTRRVHEAYFAQLYLTKVGNDAEYVSFDLRPSDAINIAVR 236

Query: 240 CKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           CKVPIQVNKYLAYSDGMRVIESGKLST  PG DG LFTE+D
Sbjct: 237 CKVPIQVNKYLAYSDGMRVIESGKLSTQFPGMDGRLFTEMD 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460235|ref|XP_004147851.1| PREDICTED: bifunctional nuclease 1-like [Cucumis sativus]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/308 (70%), Positives = 254/308 (82%), Gaps = 10/308 (3%)

Query: 1   MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
           MGSLQGPV CP + A+Q G + ++P    +M   F R +LWGF G+  +  K+   + ++
Sbjct: 1   MGSLQGPVVCPTICAKQAG-FCSLPINRSLMAFSFRRGQLWGFTGINGLNAKLPAISLKR 59

Query: 61  NARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             RKCK ++C+FSSSS+ NGS AENFNE +E++V SSVVEAVEVKSGADGF+IKMRDGRH
Sbjct: 60  CTRKCKTLRCSFSSSSDDNGSTAENFNEKNEEYVESSVVEAVEVKSGADGFVIKMRDGRH 119

Query: 121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
           LRCVHNNP GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+RNV IARPT+
Sbjct: 120 LRCVHNNPHGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVPIARPTM 179

Query: 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
           YQVVKEMI+KMGYEV+LVRVTKRVHEAYFAQLYL+K+G ET+C+SFDLRPSDAINIAVRC
Sbjct: 180 YQVVKEMIDKMGYEVKLVRVTKRVHEAYFAQLYLSKIGCETDCLSFDLRPSDAINIAVRC 239

Query: 241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD--------NERERSLIRSNM 292
           +VPIQVNKYLA+SDGMRV+ESGKLST +  +DGLLFTELD          +E +L+R NM
Sbjct: 240 QVPIQVNKYLAFSDGMRVVESGKLSTQALATDGLLFTELDRPSGQPCVEAKEFNLVR-NM 298

Query: 293 VPGQVVSR 300
           +   V  R
Sbjct: 299 LIAAVEER 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222221|ref|NP_177671.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699096|ref|NP_849890.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|30699098|ref|NP_849891.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|75172895|sp|Q9FWS6.1|BBD1_ARATH RecName: Full=Bifunctional nuclease 1; Short=AtBBD1 gi|10120446|gb|AAG13071.1|AC023754_9 Unknown protein [Arabidopsis thaliana] gi|15809929|gb|AAL06892.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|17978881|gb|AAL47412.1| At1g75380/F1B16_15 [Arabidopsis thaliana] gi|21593016|gb|AAM64965.1| wound-responsive protein, putative [Arabidopsis thaliana] gi|332197588|gb|AEE35709.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197589|gb|AEE35710.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana] gi|332197590|gb|AEE35711.1| bifunctional nuclease in basal defense response 1 [Arabidopsis thaliana]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/283 (75%), Positives = 238/283 (84%), Gaps = 12/283 (4%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWG--FKGLTAVKTKVGVFT 57
           M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG   KG+ +  T   +  
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNRTKGVKSQGTTTTITL 55

Query: 58  RQQNARKCKIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMRD 117
           R  N    K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMRD
Sbjct: 56  RLCN----KSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRD 111

Query: 118 GRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIAR 177
           GR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIAR
Sbjct: 112 GRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 171

Query: 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIA 237
           PT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIA
Sbjct: 172 PTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIA 231

Query: 238 VRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           VRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D
Sbjct: 232 VRCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQD 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842281|ref|XP_002889022.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata] gi|297334863|gb|EFH65281.1| hypothetical protein ARALYDRAFT_476684 [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/284 (75%), Positives = 236/284 (83%), Gaps = 15/284 (5%)

Query: 1   MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFK--GLTAVKTKVGVFT 57
           M SLQ PV CPA+R RQ G   + V  TG   + +F+ +   GFK  G T +        
Sbjct: 1   MRSLQAPVVCPAIRPRQVGACASLVNYTGLKPRRQFWGNRTKGFKSQGTTTI-------- 52

Query: 58  RQQNARKC-KIVQCTFSSSSNGNGSMAENFNENDEDFVNSSVVEAVEVKSGADGFMIKMR 116
                R C K ++C FSS S+GNGS AENFNENDE++VNSSVVEAVEVKSGADGFM+KMR
Sbjct: 53  ---TLRLCDKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMR 109

Query: 117 DGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIA 176
           DGR LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIA
Sbjct: 110 DGRQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIA 169

Query: 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINI 236
           RPT+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQLYL+KVGN +ECVSFDLRPSDAINI
Sbjct: 170 RPTMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLYLSKVGNASECVSFDLRPSDAINI 229

Query: 237 AVRCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
           AVRCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D
Sbjct: 230 AVRCKIPIQVNKYLAYSDGMRVIESGKISTPTPASDGLLFTEQD 273

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2018422	325	BBD1 "AT1G75380" [Arabidopsis	0.869	0.836	0.737	3e-101
TAIR|locus:2013164	329	BBD2 "bifunctional nuclease in	0.888	0.844	0.685	1.8e-96
TAIR|locus:2156842	340	AT5G66050 [Arabidopsis thalian	0.517	0.476	0.333	6.5e-15
UNIPROTKB|Q50604	164	MT1877 "Uncharacterized protei	0.402	0.768	0.238	5.4e-05

TAIR|locus:2018422 BBD1 "AT1G75380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
 Identities = 208/282 (73%), Positives = 229/282 (81%)

Query:     1 MGSLQGPVFCPAVRARQ-GGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQ 59
             M S+Q PV CPA+R RQ G   + V  TG  +K R   S+ WG +    VK++ G  T  
Sbjct:     1 MRSVQAPVVCPAIRPRQVGACASLVNYTG--LKPR---SQFWGNR-TKGVKSQ-GT-TTT 52

Query:    60 QNARKC-KIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDG 118
                R C K ++C FSS S+GNGS A          VNSSVVEAVEVKSGADGFM+KMRDG
Sbjct:    53 ITLRLCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDG 112

Query:   119 RHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARP 178
             R LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARP
Sbjct:   113 RQLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARP 172

Query:   179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAV 238
             T+YQVVKEM++KMGYEVRLVRVTKRVHEAYFAQL+L+KVGN +ECVSFDLRPSDAINIAV
Sbjct:   173 TMYQVVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAV 232

Query:   239 RCKVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
             RCK+PIQVNKYLAYSDGMRVIESGK+ST +P SDGLLFTE D
Sbjct:   233 RCKIPIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQD 274

GO:0004518 "nuclease activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0031063 "regulation of histone deacetylation" evidence=IGI

GO:0043565 "sequence-specific DNA binding" evidence=IDA;IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

TAIR|locus:2013164 BBD2 "bifunctional nuclease in basal defense response 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 192/280 (68%), Positives = 223/280 (79%)

Query:     1 MGSLQGPVFCPAVRARQGGLYNTVPSTGPVMKARFFRSELWGFKGLTAVKTKVGVFTRQQ 60
             M SLQ PV CP+VR RQ G+   + +   V K R  R + WG +     K++      + 
Sbjct:     1 MRSLQAPVVCPSVRPRQLGVSALLVNCS-VSKTRSLRKQFWGNQTKND-KSQAATVNLRL 58

Query:    61 NARKCKIVQCTFSSSSNGNGSMAXXXXXXXXXXVNSSVVEAVEVKSGADGFMIKMRDGRH 120
             + R+ K ++C FSS S+G GS A          V SSV+EAVEVKSG DGFM+KM+DGR 
Sbjct:    59 HLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKDGRQ 118

Query:   121 LRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTL 180
             LRCVHNNPQGG+LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAAM NVQIARPT+
Sbjct:   119 LRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTM 178

Query:   181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRC 240
             YQVVK+M++KMGYEVRLVRVT RVHEAYFA+LYL+KVG++++CVSFDLRPSDAINIAVRC
Sbjct:   179 YQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIAVRC 238

Query:   241 KVPIQVNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELD 280
             KVPIQVNKYLAYSDGMRVI+SGKLS  +P SDGLLFTELD
Sbjct:   239 KVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELD 278

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0006289 "nucleotide-excision repair" evidence=IEA

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2156842 AT5G66050 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 6.5e-15, P = 6.5e-15
 Identities = 57/171 (33%), Positives = 89/171 (52%)

Query:   128 PQG-GHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAMRNVQIARPTLYQVVK 185
             P G G L  +   P I LK+      LLP+IV +     LL   ++      P  +Q V 
Sbjct:   132 PIGLGFLRQFK-QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVS 190

Query:   186 EMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQ 245
              +++K+GYEV++V++T R+   Y+A L L K G + E +  D RPSDAIN+A  C+ PI 
Sbjct:   191 AVVDKLGYEVKMVKLTGRIVNTYYASLCLGKPG-DIEAICIDSRPSDAINVARACQAPIY 249

Query:   246 VNKYLAYSDGMRVIESGKLSTHSPGSDGLLFTELDN----ERERSLIRSNM 292
             VNK +   + +++   G+  +  P  + +L +  D       E  L+R NM
Sbjct:   250 VNKAIVLEEAIKIGYGGRPQSAKPVFNVILDSAPDGPDPLSEELKLVR-NM 299

GO:0003677 "DNA binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA

UNIPROTKB|Q50604 MT1877 "Uncharacterized protein Rv1829/MT1877" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 112 (44.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 32/134 (23%), Positives = 67/134 (50%)

Query:   140 PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199
             P ++L+  +G   L PI + +  +  +    + V+  RP  + +++++I  +G+ ++ VR
Sbjct:    18 PVLLLREANGDRYL-PIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVR 76

Query:   200 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259
             +       ++A L   +  N    +    RPSD++ IA+R  VPI V + +    G+ + 
Sbjct:    77 IVDLQEGTFYADLIFDR--N----IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLIP 130

Query:   260 -ESGKLSTHSPGSD 272
              ES + +T +   D
Sbjct:   131 DESDEEATTAVRED 144


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      313       303   0.00097  115 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.72u 0.08s 22.80t   Elapsed:  00:00:01
  Total cpu time:  22.72u 0.08s 22.80t   Elapsed:  00:00:01
  Start:  Thu May  9 15:18:45 2013   End:  Thu May  9 15:18:46 2013

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FWS6	BBD1_ARATH	3, ., 1, ., -, ., -	0.7597	0.8658	0.8338	yes	no
Q6YZM6	BBD2_ORYSJ	3, ., 1, ., -, ., -	0.5765	0.8690	0.8369	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0003027102 hypothetical protein (326 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam02577	132	pfam02577, DNase-RNase, Bifunctional nuclease	6e-17
COG1259	151	COG1259, COG1259, Uncharacterized conserved protei	5e-14

>gnl|CDD|217117 pfam02577, DNase-RNase, Bifunctional nuclease

 Score = 75.3 bits (186), Expect = 6e-17
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 137 APHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVR 196
           +  P ++L+ EDG   +LPI +    +  +  A+  V+  RP  + ++K+++E +G +V 
Sbjct: 12  SGAPVVLLRDEDG-ERVLPIWIGPAEAQAIALALEGVEPPRPLTHDLLKDVLEALGAKVE 70

Query: 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
            V +       ++A+L L   G E      D RPSDAI +A+R   PI V +
Sbjct: 71  RVVIDDLKDGTFYARLVLRDGGEEE----IDARPSDAIALALRTGAPIYVTE 118

This family is a bifunctional nuclease, with both DNase and RNase activity. It forms a wedge-shaped dimer, with each monomer being triangular in shape. A large groove at the thick end of the wedge contains a possible active site. Length = 132

>gnl|CDD|224179 COG1259, COG1259, Uncharacterized conserved protein [Function unknown]

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 135 DYAPH--PAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMG 192
                  P +VL +E G   +LPI +    ++ +  A+  V+  RP  + ++ E+ E++G
Sbjct: 13  FVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELG 72

Query: 193 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
             V  V +   +   Y+A L L +   + +    D RPSDAI +A+R   PI V +
Sbjct: 73  ARVEKVVIDDLIDNTYYATLILEQDDGKIQ---IDARPSDAIALALRVGAPIYVAE 125

Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PF02577	135	DNase-RNase: Bifunctional nuclease; InterPro: IPR0	100.0
COG1259	151	Uncharacterized conserved protein [Function unknow	100.0

>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function

Probab=100.00  E-value=7.9e-36  Score=252.80  Aligned_cols=126  Identities=29%  Similarity=0.465  Sum_probs=105.5

Q ss_pred             CccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 021384          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (313)
Q Consensus       130 ~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFy  209 (313)
                      +..++...++|+++|++++++ +.|||||+..||.+|+.++.|.+++||+|||||.++++++|.++++|+|+++++|+||
T Consensus         5 gi~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~   83 (135)
T PF02577_consen    5 GISVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY   83 (135)
T ss_dssp             EEEEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred             EEEEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence            345566667899999999976 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021384          210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI  259 (313)
Q Consensus       210 ArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~  259 (313)
                      |+|++++++   +++++|+||||||+||+|+|+||||+++|++++++...
T Consensus        84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~  130 (135)
T PF02577_consen   84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVE  130 (135)
T ss_dssp             EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--
T ss_pred             EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCc
Confidence            999999776   47899999999999999999999999999999999876

The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.

>COG1259 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-34  Score=251.34  Aligned_cols=127  Identities=27%  Similarity=0.445  Sum_probs=118.0

Q ss_pred             CccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 021384          130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF  209 (313)
Q Consensus       130 ~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFy  209 (313)
                      +-++.+..+.|++++...+++++.|||||+.+||.+|+.++++.+++||+||||+.++++.+|.+|++|+|++++++|||
T Consensus        10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy   89 (151)
T COG1259          10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY   89 (151)
T ss_pred             EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence            45667777888777777777778999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021384          210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI  259 (313)
Q Consensus       210 ArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~  259 (313)
                      |+|+++++++   .+.+||||||||+||+|.|+||||.|+|+++++++..
T Consensus        90 A~L~~~~~~~---~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~  136 (151)
T COG1259          90 ATLILEQDDG---KIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIE  136 (151)
T ss_pred             EEEEEEcCCc---eEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCc
Confidence            9999999885   5899999999999999999999999999999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	4e-23

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A Length = 164

 Score = 92.5 bits (229), Expect = 4e-23
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%)

Query: 112 MIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMR 171
           M K      ++ +  +            P ++L   +GT  +LPI +       L  AM 
Sbjct: 13  MRKAW----VKTLALDRVSNT-------PVVILG-IEGTNRVLPIWIGACEGHALALAME 60

Query: 172 NVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL------TKVGNETECVS 225
            ++  RP  + ++  ++E +   V  V +       ++A L +       +   E   + 
Sbjct: 61  KMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALID 120

Query: 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260
            D RPSDAI +AV+   PI V+  L     + +  
Sbjct: 121 IDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELEV 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1vjl_A	164	Hypothetical protein TM0160; structural genomics,	100.0

>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A

Probab=100.00  E-value=1e-40  Score=292.33  Aligned_cols=137  Identities=24%  Similarity=0.363  Sum_probs=124.1

Q ss_pred             eeEEeecCCCCccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEE
Q 021384          120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR  199 (313)
Q Consensus       120 ~l~~~~~~~~~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~  199 (313)
                      ++|...+  +++++|+++++|+|||++++++ +.|||||+..||.+|+.+++|.+++||+|||||.++++++|+++++|+
T Consensus        12 ~~~~~~v--~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~   88 (164)
T 1vjl_A           12 HMRKAWV--KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVI   88 (164)
T ss_dssp             CEEEEEE--EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEE
T ss_pred             ceeEEEE--EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEE
Confidence            4455555  6899999999999999998876 799999999999999999999999999999999999999999999999


Q ss_pred             EEeEECCEEEEEEEEE------ecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021384          200 VTKRVHEAYFAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI  259 (313)
Q Consensus       200 It~~~dGtFyArL~L~------k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~  259 (313)
                      |+++++|||||+|+|+      +++++.+.+++|+|||||||||+|+|+||||+|+|++++|+.+.
T Consensus        89 I~~l~dgtfyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~  154 (164)
T 1vjl_A           89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE  154 (164)
T ss_dssp             EEEEETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred             EEEeECCEEEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCc
Confidence            9999999999999999      66533357899999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1vjla_	151	d.257.1.1 (A:) Hypothetical protein TM0160 {Thermo	3e-27

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 135 DYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYE 194
           D   +  +V+   +GT  +LPI +       L  AM  ++  RP  + ++  ++E +   
Sbjct: 13  DRVSNTPVVILGIEGTNRVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEAR 72

Query: 195 VRLVRVTKRVHEAYFAQLYL------TKVGNETECVSFDLRPSDAINIAVRCKVPIQVNK 248
           V  V +       ++A L +       +   E   +  D RPSDAI +AV+   PI V+ 
Sbjct: 73  VDKVIIHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSD 132

Query: 249 YLAYSDGMRVIES 261
            L     + +  +
Sbjct: 133 NLVEKHSIELEVN 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1vjla_	151	Hypothetical protein TM0160 {Thermotoga maritima [	100.0

>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein TM0160
superfamily: Hypothetical protein TM0160
family: Hypothetical protein TM0160
domain: Hypothetical protein TM0160
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5e-40  Score=281.87  Aligned_cols=130  Identities=24%  Similarity=0.361  Sum_probs=119.8

Q ss_pred             CCccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEE
Q 021384          129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY  208 (313)
Q Consensus       129 ~~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtF  208 (313)
                      ++.+++..+++|+|+|++++++ +.||||||..||.+|+.+++|.+++||+|||||.++++++|++|++|+|+++++|||
T Consensus         8 ~~i~~~~~~~~pvvlL~~~~~~-~~LPI~Ig~~EA~~I~~~l~~~~~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~f   86 (151)
T d1vjla_           8 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF   86 (151)
T ss_dssp             EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred             EEEEEecCCCCcEEEEEECCCC-eEEEEEEChHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCe
Confidence            5678888999999999998876 799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEecCc------eeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021384          209 FAQLYLTKVGN------ETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI  259 (313)
Q Consensus       209 yArL~L~k~g~------e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~  259 (313)
                      ||+|+|+++..      +.+.+++||||||||+||+|+++||||+++|++++|+.+.
T Consensus        87 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlr~~~PI~v~~~Vl~~a~i~~~  143 (151)
T d1vjla_          87 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE  143 (151)
T ss_dssp             EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred             EEEEEEecCcccccccccCceeEeccChhHHHHHHHhhCCCEEEcHHHHHhcCCCCC
Confidence            99999986431      1257899999999999999999999999999999999765