Citrus Sinensis ID: 021386

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
cccccccccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccHHcccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccccHHHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHHHHHHHHccccEEEEEEHHHHHHccccHHHHHHHHHccccccHHHHHHHHcccEEEEEEccccccccccccccc
ccccccccccHHHHHHcccccHHHHHHHHHHccccccHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHEEEccccccccEEEEEccHHHHHHHHHHHHccHHHHHHHcccccccccccccccccEEEEEccHHcHHHHHHHHHHccccccccEEEEEEEEEEEccHHHHHHHHHHHHHHcccHEEEEEEHccccccccHcccccHHHHHHHHHHcccccEEEccHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccEEEEEEEccccccccccccccc
maypvadsqsnkaavqatnddasasklscvkkgymkddyihlfvrrpvrrspiinrGYFARWAALRRLLYQFLdcgsdgdkkchtkkqilslgagfdtTYFQLQaegkaphlyVELDFIEVTSKKAALIETHGELKDKVGVTASISqakgevlgdnykllpvdlrDIQMLNEVINlanmdpslptFIIAECVLiyldpdssraiVGWASKTFSTAVFFLYEQSRGcallginatpTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDamglfgdfgfpkd
maypvadsqsnkaavqatnddasasklscvkkgymkddyihlfvrrpvrrspiinRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHgelkdkvgvtasisqakgevlgdnyklLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYStfinpqerrrIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
**************************LSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIET*********************LGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGF***
*****************TNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPK*
***********************ASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
*************AVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTAS***AKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMG**GDF*****
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MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q8BYR1 686 Leucine carboxyl methyltr yes no 0.907 0.413 0.368 6e-50
Q5XIA3 686 Leucine carboxyl methyltr yes no 0.910 0.415 0.378 4e-49
O60294 686 Leucine carboxyl methyltr yes no 0.897 0.409 0.358 2e-42
Q9UIC8334 Leucine carboxyl methyltr no no 0.894 0.838 0.350 2e-42
Q3T0H0332 Leucine carboxyl methyltr yes no 0.900 0.849 0.354 7e-42
Q6P4Z6332 Leucine carboxyl methyltr no no 0.856 0.807 0.339 8e-42
P46554333 Probable leucine carboxyl yes no 0.907 0.852 0.323 3e-37
Q60YU0331 Probable leucine carboxyl N/A no 0.907 0.858 0.319 4e-36
Q4WS57398 Leucine carboxyl methyltr yes no 0.904 0.711 0.310 2e-33
O94257310 Leucine carboxyl methyltr yes no 0.884 0.893 0.297 2e-33
>sp|Q8BYR1|LCMT2_MOUSE Leucine carboxyl methyltransferase 2 OS=Mus musculus GN=Lcmt2 PE=2 SV=4 Back     alignment and function desciption
 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 112/304 (36%), Positives = 168/304 (55%), Gaps = 20/304 (6%)

Query: 9   QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRL 68
           Q     VQ+TND +S SK S    GY++D +  L V  PVRR+P+I+RGY+ R  A+R  
Sbjct: 7   QRRAGTVQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARAVRHC 66

Query: 69  LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYV-ELDFIEVTSKKAA 127
           +  FL+  S    +  T+ QILSLG+G D+ YF+L+A G      V E+DF +V+  KA 
Sbjct: 67  VRAFLELTSALPSR--TRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAE 124

Query: 128 LIETHGELKDKVGVTASISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
            IE   EL+ + G       A        +Y++L  DLR++Q L E ++ A +D + PT 
Sbjct: 125 RIEETPELRAQTGPFKIGDSASSLCFESADYRILGADLRELQRLGEALDGAGLDATSPTL 184

Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRG----------------CALLG 230
           ++AE VL YL+P S+ A++ WA++ F  A+F +YEQ +                   L G
Sbjct: 185 LLAEAVLTYLEPSSATALIAWAAQRFPDALFVIYEQMQPGDAFGQIMLQHFQRLHSPLHG 244

Query: 231 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQE 290
           +   P + A+ + FL  GW    A D+   Y   ++ +ER+R+E LE FDE+EEWH+   
Sbjct: 245 LELFPVVKAQRQRFLQAGWTACSALDLNEFYRRLLSAEERQRVETLEPFDEYEEWHLKCS 304

Query: 291 HYCV 294
           HY +
Sbjct: 305 HYFI 308
Probable S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity). May methylate the carboxyl group of leucine residues to form alpha-leucine ester residues.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q5XIA3|LCMT2_RAT Leucine carboxyl methyltransferase 2 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1 Back     alignment and function description
>sp|O60294|LCMT2_HUMAN Leucine carboxyl methyltransferase 2 OS=Homo sapiens GN=LCMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q9UIC8|LCMT1_HUMAN Leucine carboxyl methyltransferase 1 OS=Homo sapiens GN=LCMT1 PE=1 SV=2 Back     alignment and function description
>sp|Q3T0H0|LCMT1_BOVIN Leucine carboxyl methyltransferase 1 OS=Bos taurus GN=LCMT1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P4Z6|LCMT1_RAT Leucine carboxyl methyltransferase 1 OS=Rattus norvegicus GN=Lcmt1 PE=2 SV=1 Back     alignment and function description
>sp|P46554|LCMT1_CAEEL Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis elegans GN=B0285.4 PE=3 SV=1 Back     alignment and function description
>sp|Q60YU0|LCMT1_CAEBR Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis briggsae GN=CBG18087 PE=3 SV=1 Back     alignment and function description
>sp|Q4WS57|LCMT1_ASPFU Leucine carboxyl methyltransferase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ppm1 PE=3 SV=1 Back     alignment and function description
>sp|O94257|LCMT1_SCHPO Leucine carboxyl methyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppm1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
255541044346 leucine carboxyl methyltransferase, puta 0.990 0.895 0.810 1e-153
225453390341 PREDICTED: leucine carboxyl methyltransf 1.0 0.917 0.805 1e-153
297734612337 unnamed protein product [Vitis vinifera] 0.987 0.916 0.809 1e-152
147788699328 hypothetical protein VITISV_024939 [Viti 0.952 0.908 0.805 1e-146
449445505338 PREDICTED: leucine carboxyl methyltransf 0.993 0.920 0.753 1e-143
356567004332 PREDICTED: leucine carboxyl methyltransf 0.971 0.915 0.771 1e-140
297848290334 leucine carboxyl methyltransferase famil 0.971 0.910 0.738 1e-140
356548797334 PREDICTED: leucine carboxyl methyltransf 0.984 0.922 0.734 1e-137
22329288332 Leucine carboxyl methyltransferase [Arab 0.968 0.912 0.723 1e-136
224137162306 predicted protein [Populus trichocarpa] 0.910 0.931 0.777 1e-132
>gi|255541044|ref|XP_002511586.1| leucine carboxyl methyltransferase, putative [Ricinus communis] gi|223548766|gb|EEF50255.1| leucine carboxyl methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/327 (81%), Positives = 285/327 (87%), Gaps = 17/327 (5%)

Query: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60
           MA PV DS SN+AAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGY+A
Sbjct: 1   MAKPVPDSHSNRAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYYA 60

Query: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE 120
           RWAALR+L+YQFLDC  +GD+K HTKKQILS+GAGFDTTYFQLQ EGKAP LYVELDF E
Sbjct: 61  RWAALRKLMYQFLDCEMNGDEKGHTKKQILSIGAGFDTTYFQLQDEGKAPSLYVELDFKE 120

Query: 121 VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 180
           VTSKKAA+IE+  +L++KVG +ASISQ KGEV  ++YKLLPVDLRDIQ L+E+I L NMD
Sbjct: 121 VTSKKAAIIES-SQLREKVGASASISQEKGEVFSEHYKLLPVDLRDIQKLDEIITLTNMD 179

Query: 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SR 224
           PSLPTFIIAECVLIYLDPDS+RAIVGW SKTFSTAVFFLYEQ                SR
Sbjct: 180 PSLPTFIIAECVLIYLDPDSTRAIVGWTSKTFSTAVFFLYEQIHPNDAFGQQMIRNLESR 239

Query: 225 GCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEE 284
           GCALLGI ATPTLLAKEKLFLDQGWQ+AVAWDMLRVYS FI  QERRRIERLELFDEFEE
Sbjct: 240 GCALLGIYATPTLLAKEKLFLDQGWQRAVAWDMLRVYSDFIEAQERRRIERLELFDEFEE 299

Query: 285 WHMMQEHYCVAHAINDAMGLFGDFGFP 311
           WHMMQEHYCV  AINDAMGLFG+ GFP
Sbjct: 300 WHMMQEHYCVTFAINDAMGLFGNLGFP 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453390|ref|XP_002271322.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734612|emb|CBI16663.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788699|emb|CAN69755.1| hypothetical protein VITISV_024939 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445505|ref|XP_004140513.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567004|ref|XP_003551714.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297848290|ref|XP_002892026.1| leucine carboxyl methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337868|gb|EFH68285.1| leucine carboxyl methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356548797|ref|XP_003542786.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|22329288|ref|NP_171712.2| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|42571301|ref|NP_973741.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|18377694|gb|AAL66997.1| unknown protein [Arabidopsis thaliana] gi|22136718|gb|AAM91678.1| unknown protein [Arabidopsis thaliana] gi|332189262|gb|AEE27383.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|332189263|gb|AEE27384.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224137162|ref|XP_002327049.1| predicted protein [Populus trichocarpa] gi|222835364|gb|EEE73799.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
TAIR|locus:2205619332 SBI1 "SUPPRESSOR OF BRI1" [Ara 0.968 0.912 0.723 1.1e-121
FB|FBgn0028507337 CG3793 [Drosophila melanogaste 0.881 0.818 0.385 6.9e-47
MGI|MGI:1353659 686 Lcmt2 "leucine carboxyl methyl 0.913 0.416 0.373 8.8e-47
UNIPROTKB|F1SI58 685 LCMT2 "Uncharacterized protein 0.910 0.416 0.378 2.3e-46
UNIPROTKB|O60294 686 LCMT2 "Leucine carboxyl methyl 0.910 0.415 0.368 1.1e-45
RGD|1305829 686 Lcmt2 "leucine carboxyl methyl 0.913 0.416 0.379 1.4e-45
ZFIN|ZDB-GENE-110714-2 673 lcmt2 "leucine carboxyl methyl 0.907 0.421 0.368 1.6e-45
UNIPROTKB|G3N0F1 685 LCMT2 "Uncharacterized protein 0.884 0.404 0.364 3.1e-45
ZFIN|ZDB-GENE-040912-75325 lcmt1 "leucine carboxyl methyl 0.942 0.907 0.365 1.5e-44
UNIPROTKB|E2RSZ5 685 LCMT2 "Uncharacterized protein 0.910 0.416 0.355 2.2e-44
TAIR|locus:2205619 SBI1 "SUPPRESSOR OF BRI1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 235/325 (72%), Positives = 273/325 (84%)

Query:     5 VADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAA 64
             +A+S+SN+AAVQATNDDASASKLSCVKKGYMKDDY+HLFV+RPVRRSPIINRGYF+RWAA
Sbjct:     1 MAESRSNRAAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFSRWAA 60

Query:    65 LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK 124
              R+L+ QFL  G+       +KKQILSLGAGFDTTYFQL  EG  P+LYVELDF EVTSK
Sbjct:    61 FRKLMSQFLLSGTS------SKKQILSLGAGFDTTYFQLLDEGNGPNLYVELDFKEVTSK 114

Query:   125 KAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP 184
             KAA+I+   +L+DK+G  ASIS  +G+VL D+YKLLPVDLRDI  L +VI+ A+MD SLP
Sbjct:   115 KAAVIQNSSQLRDKLGANASISIDEGQVLSDHYKLLPVDLRDIPKLRDVISFADMDLSLP 174

Query:   185 TFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SRGCAL 228
             TFIIAECVLIYLDPDSSRAIV W+SKTFSTAVFFLYEQ                SRGCAL
Sbjct:   175 TFIIAECVLIYLDPDSSRAIVNWSSKTFSTAVFFLYEQIHPDDAFGHQMIRNLESRGCAL 234

Query:   229 LGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMM 288
             L I+A+PTLLAKE+LFLD GWQ+AVAWDML+VY +F++ QE+RRIERLELFDEFEEWHMM
Sbjct:   235 LSIDASPTLLAKERLFLDNGWQRAVAWDMLKVYGSFVDTQEKRRIERLELFDEFEEWHMM 294

Query:   289 QEHYCVAHAINDAMGLFGDFGFPKD 313
             QEHYCV +A+NDAMG+FGDFGF ++
Sbjct:   295 QEHYCVTYAVNDAMGIFGDFGFTRE 319
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA;ISS
GO:0048573 "photoperiodism, flowering" evidence=RCA
FB|FBgn0028507 CG3793 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1353659 Lcmt2 "leucine carboxyl methyltransferase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI58 LCMT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O60294 LCMT2 "Leucine carboxyl methyltransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305829 Lcmt2 "leucine carboxyl methyltransferase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110714-2 lcmt2 "leucine carboxyl methyltransferase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3N0F1 LCMT2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-75 lcmt1 "leucine carboxyl methyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSZ5 LCMT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P46554LCMT1_CAEEL2, ., 1, ., 1, ., 2, 3, 30.32380.90730.8528yesno
Q3T0H0LCMT1_BOVIN2, ., 1, ., 1, ., 2, 3, 30.35480.90090.8493yesno
Q6C997LCMT1_YARLI2, ., 1, ., 1, ., 2, 3, 30.32510.86900.8395yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_100016.1
annotation not avaliable (334 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__2849__AT4G08960.1
annotation not avaliable (391 aa)
    • • 0.431

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
pfam04072175 pfam04072, LCM, Leucine carboxyl methyltransferase 4e-20
COG3315297 COG3315, COG3315, O-Methyltransferase involved in 1e-08
TIGR00027260 TIGR00027, mthyl_TIGR00027, methyltransferase, TIG 4e-06
>gnl|CDD|217872 pfam04072, LCM, Leucine carboxyl methyltransferase Back     alignment and domain information 
 Score = 85.3 bits (212), Expect = 4e-20
 Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 14  AVQATNDDASASKLSCVKKGYMKDDYIHLFVRR--------PVRRSPIINRGYFARWAAL 65
           A+      A  S+        + D Y    VR             +P +N G  AR    
Sbjct: 1   ALITAAARALESRRP---DPLLDDPYAAELVRAIDYDFSKLRPGGAPQLNLGIAARTRFF 57

Query: 66  RRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK 125
              L  FL             +Q++ LGAG DT  ++L         + E+D  EV   K
Sbjct: 58  DDFLRAFLAAHPGA-------RQVVILGAGLDTRAYRL-DWPAGGVRWFEVDLPEVIEFK 109

Query: 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPT 185
             L+   G                        + + VDLRD     + +  A  DPS PT
Sbjct: 110 RRLLPEAGAR-----------------PPARRRYVAVDLRD-DDWLDALRAAGFDPSRPT 151

Query: 186 FIIAECVLIYLDPDSSRAIVGW 207
             +AE +L+YL  ++  A++  
Sbjct: 152 LFVAEGLLMYLTEEAVDALLRR 173

Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence. Length = 175
>gnl|CDD|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG2918335 consensus Carboxymethyl transferase [Posttranslati 100.0
TIGR00027260 mthyl_TIGR00027 methyltransferase, putative, TIGR0 100.0
PF04072183 LCM: Leucine carboxyl methyltransferase; InterPro: 100.0
COG3315297 O-Methyltransferase involved in polyketide biosynt 100.0
PF04672267 Methyltransf_19: S-adenosyl methyltransferase; Int 98.02
TIGR00740239 methyltransferase, putative. A simple BLAST search 97.57
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 97.49
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.0
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 96.91
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 96.74
TIGR00452314 methyltransferase, putative. Known examples to dat 96.61
PF12147311 Methyltransf_20: Putative methyltransferase; Inter 96.28
PRK15068322 tRNA mo(5)U34 methyltransferase; Provisional 96.19
TIGR03438301 probable methyltransferase. This model represents 95.86
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 95.76
PLN02244340 tocopherol O-methyltransferase 95.49
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 94.87
PLN03075296 nicotianamine synthase; Provisional 94.69
PLN02490340 MPBQ/MSBQ methyltransferase 94.59
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 94.58
PRK07580230 Mg-protoporphyrin IX methyl transferase; Validated 94.37
PLN02585315 magnesium protoporphyrin IX methyltransferase 94.1
smart00828224 PKS_MT Methyltransferase in polyketide synthase (P 94.0
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 93.61
PLN02336 475 phosphoethanolamine N-methyltransferase 93.55
PF08003315 Methyltransf_9: Protein of unknown function (DUF16 93.53
PF06080204 DUF938: Protein of unknown function (DUF938); Inte 93.03
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 92.75
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 92.66
PLN02336475 phosphoethanolamine N-methyltransferase 92.25
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 91.78
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 91.31
PLN02233261 ubiquinone biosynthesis methyltransferase 91.06
KOG2361264 consensus Predicted methyltransferase [General fun 90.54
PRK12335287 tellurite resistance protein TehB; Provisional 90.38
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 90.24
PRK06202232 hypothetical protein; Provisional 89.57
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 89.02
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 88.74
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 88.24
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 88.07
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 88.02
PRK11207197 tellurite resistance protein TehB; Provisional 87.85
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 86.18
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 85.14
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 84.03
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 83.38
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 81.1
PLN02366308 spermidine synthase 81.01
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-83  Score=584.08  Aligned_cols=295  Identities=38%  Similarity=0.673  Sum_probs=269.3

Q ss_pred             cCcccchhhhhhcHHHHHhhhhhhhcCCCCchhHHhhhc-CCCcCCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 021386            7 DSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHT   85 (313)
Q Consensus         7 ~~~~~d~~Vq~T~~~a~~sk~sav~~gy~~Dpfa~~fv~-~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~   85 (313)
                      ...+.|.+||+||+||+.||++++..||+.|||+.+|+. +..||+|.||||||+|+.+|+..|.+||.+..+       
T Consensus        15 ~~~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~-------   87 (335)
T KOG2918|consen   15 RGKSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDG-------   87 (335)
T ss_pred             cccCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCC-------
Confidence            345788999999999999999999999999999999998 677899999999999999999999999999665       


Q ss_pred             cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccch---hhhcccccccccCCcccCCCeEEEe
Q 021386           86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELK---DKVGVTASISQAKGEVLGDNYKLLP  161 (313)
Q Consensus        86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~---~~~g~~~~~~~~~~~l~s~~y~lv~  161 (313)
                      ++||||||||+||++|||...+ ..++.|||||||+++++|..++.+.|.++   ++.+++ ....+++.+++.+|+++|
T Consensus        88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g  166 (335)
T KOG2918|consen   88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIG  166 (335)
T ss_pred             ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeec
Confidence            8999999999999999998875 57899999999999999996655555532   222333 455677789999999999


Q ss_pred             ccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec----------------ccC
Q 021386          162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SRG  225 (313)
Q Consensus       162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~----------------~rg  225 (313)
                      ||||+.+.++++|..+|+|.+.|||||+||||+||+|+++..||+|+++.|+++.||+|||                .||
T Consensus       167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~  246 (335)
T KOG2918|consen  167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG  246 (335)
T ss_pred             cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999                899


Q ss_pred             CccccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHHHHHHHhhccCCCcHHHHHHHhcCcEEEEEecCCcccc
Q 021386          226 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLF  305 (313)
Q Consensus       226 ~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~a~~~~~~~~  305 (313)
                      +||+|++.|+|+|+|++||.++||+.|.+.||+++|+.++|.+||+|+++||||||+|||+++|+|||+++|+++ ....
T Consensus       247 ~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~Eel~~l~~HYcL~~A~~~-~~~~  325 (335)
T KOG2918|consen  247 CPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDELEELHLLCQHYCLCHATKG-VFKG  325 (335)
T ss_pred             CCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhHHHHHHHHHHheeeeeecc-cccC
Confidence            999999999999999999999999999999999999989999999999999999999999999999999999998 3333


Q ss_pred             cccCC
Q 021386          306 GDFGF  310 (313)
Q Consensus       306 ~~~~~  310 (313)
                      ..+++
T Consensus       326 ~~l~l  330 (335)
T KOG2918|consen  326 IELGL  330 (335)
T ss_pred             ceecc
Confidence            33444

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family Back     alignment and domain information
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues Back     alignment and domain information
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>TIGR00452 methyltransferase, putative Back     alignment and domain information
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length Back     alignment and domain information
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PLN03075 nicotianamine synthase; Provisional Back     alignment and domain information
>PLN02490 MPBQ/MSBQ methyltransferase Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>KOG2361 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02366 spermidine synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3o7w_A294 The Crystal Structure Of Human Leucine Carboxyl Met 4e-43
3iei_A334 Crystal Structure Of Human Leucine Carboxylmethyltr 7e-43
2zw9_A 695 Crystal Structure Of Trna Wybutosine Synthesizing E 2e-20
2ob1_A319 Ppm1 With 1,8-Ans Length = 319 3e-16
1rjd_A334 Structure Of Ppm1, A Leucine Carboxy Methyltransfer 4e-16
2ob2_A327 Ppm1 In The Absence Of 1,8-Ans (Cf 1jd) Length = 32 9e-15
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl Methyltransferase 1 Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (433), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 106/291 (36%), Positives = 153/291 (52%), Gaps = 20/291 (6%)
Query: 11  NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
           N   V+ T +DAS  K   V  GY  D YI  FVR    R++P INRGYFAR   + +L+
Sbjct: 6   NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 65
Query: 70  YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
             FL        +CH   QI++LGAG DTT+++L+ E   P  Y E+DF  + ++K   I
Sbjct: 66  KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSI 118
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
           +    L   +    S    Q  G +L    Y ++  DLRD+  L E +   NM+  LPT 
Sbjct: 119 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 178
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLD 246
           +IAECVL+Y+ P+ S  ++ WA+ +F  A+F  YEQ        +N   +L ++++  L 
Sbjct: 179 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQ--------VNEGKSLESQKERLLS 230
Query: 247 QGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 297
            GW+ A A DM+ +Y+      E  RIE LE  DE E    +  HYC+  A
Sbjct: 231 NGWETASAVDMMELYNRLPRA-EVSRIESLEFLDEMELLEQLMRHYCLCWA 280
>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine Carboxylmethyltransferase-1 In Complex With S-Adenosyl Homocysteine Length = 334 Back     alignment and structure
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme Tyw4 Length = 695 Back     alignment and structure
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans Length = 319 Back     alignment and structure
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase Involved In The Regulation Of Protein Phosphatase 2a Activity Length = 334 Back     alignment and structure
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd) Length = 327 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 3e-96
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 4e-87
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 6e-78
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 1e-07
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Length = 334 Back     alignment and structure
 Score =  286 bits (734), Expect = 3e-96
 Identities = 105/320 (32%), Positives = 155/320 (48%), Gaps = 28/320 (8%)

Query: 6   ADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR-PVRRSPIINRGYFARWAA 64
           +    N   V+ T +DAS  K   V  GY  D YI  FVR    R++P INRGYFAR   
Sbjct: 17  SSMDENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHG 76

Query: 65  LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK 124
           + +L+  FL       +K     QI++LGAG DTT+++L+ E      Y E+DF  + ++
Sbjct: 77  VSQLIKAFL-------RKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTR 129

Query: 125 KAALIETHGELKDKVGVTAS---ISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDP 181
           K   I+    L   +    S   +      +    Y ++  DLRD+  L E +   NM+ 
Sbjct: 130 KLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNT 189

Query: 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SRG 225
            LPT +IAECVL+Y+ P+ S  ++ WA+ +F  A+F  YEQ                 R 
Sbjct: 190 QLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQ 249

Query: 226 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEW 285
           C L G+    +L ++++  L  GW+ A A DM+ +Y+  +   E  RIE LE  DE E  
Sbjct: 250 CDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEVSRIESLEFLDEMELL 308

Query: 286 HMMQEHYCVAHAINDAMGLF 305
             +  HYC+  A      L 
Sbjct: 309 EQLMRHYCLCWATKGGNELG 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Length = 334 Back     alignment and structure
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Length = 310 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 100.0
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 100.0
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 100.0
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 100.0
3giw_A277 Protein of unknown function DUF574; rossmann-fold 98.78
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 98.52
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 98.13
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 97.58
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 97.48
3dtn_A234 Putative methyltransferase MM_2633; structural gen 97.45
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 97.24
3lcc_A235 Putative methyl chloride transferase; halide methy 97.21
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 97.12
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 97.12
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 97.11
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 97.1
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 97.09
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 97.09
2r3s_A335 Uncharacterized protein; methyltransferase domain, 97.01
3ocj_A305 Putative exported protein; structural genomics, PS 96.99
3dp7_A363 SAM-dependent methyltransferase; structural genomi 96.99
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 96.93
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 96.93
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 96.72
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 96.68
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 96.61
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 96.56
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 96.54
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 96.48
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 96.35
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 96.34
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 96.28
3dh0_A219 SAM dependent methyltransferase; cystal structure, 96.26
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 96.23
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 96.17
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 96.16
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 96.15
3hnr_A220 Probable methyltransferase BT9727_4108; structural 96.14
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 96.13
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 96.1
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 96.04
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 96.02
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 95.95
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 95.86
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 95.85
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 95.81
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 95.72
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 95.71
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 95.51
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 95.47
3f4k_A257 Putative methyltransferase; structural genomics, P 95.33
2kw5_A202 SLR1183 protein; structural genomics, northeast st 95.3
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.2
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 95.16
2p7i_A250 Hypothetical protein; putative methyltransferase, 95.14
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 95.14
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 95.12
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 95.12
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 94.8
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 94.72
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 94.5
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.85
3gu3_A284 Methyltransferase; alpha-beta protein, structural 93.78
1vl5_A260 Unknown conserved protein BH2331; putative methylt 93.71
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 93.64
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 93.55
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 93.51
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.28
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 93.28
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 92.51
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 92.07
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.02
2i62_A265 Nicotinamide N-methyltransferase; structural genom 91.93
3ege_A261 Putative methyltransferase from antibiotic biosyn 91.85
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 91.81
1vlm_A219 SAM-dependent methyltransferase; possible histamin 91.75
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 91.63
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 91.63
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.81
2pxx_A215 Uncharacterized protein MGC2408; structural genomi 90.8
2y1w_A 348 Histone-arginine methyltransferase CARM1; histone 90.72
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 90.71
3o4f_A294 Spermidine synthase; aminopropyltransferase, polya 90.55
4df3_A233 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 90.07
4hc4_A376 Protein arginine N-methyltransferase 6; HRMT1L6, S 89.76
3i9f_A170 Putative type 11 methyltransferase; structural gen 89.66
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 89.29
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 89.12
1wzn_A252 SAM-dependent methyltransferase; structural genomi 89.07
2fyt_A340 Protein arginine N-methyltransferase 3; structural 88.97
3cc8_A230 Putative methyltransferase; structural genomics, j 88.77
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 87.18
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 87.05
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 86.43
3e05_A204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 85.77
4e2x_A 416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 84.79
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 84.64
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 84.45
3r0q_C 376 Probable protein arginine N-methyltransferase 4.2; 84.07
2g72_A289 Phenylethanolamine N-methyltransferase; HET: SAM F 83.08
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 82.67
2a14_A263 Indolethylamine N-methyltransferase; SGC,INMT, str 81.61
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 81.42
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Back     alignment and structure
Probab=100.00  E-value=8.3e-84  Score=611.11  Aligned_cols=292  Identities=35%  Similarity=0.617  Sum_probs=264.7

Q ss_pred             cccchhhhhhcHHHHHhhhhhhhcCCCCchhHHhhhcCC-CcCCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 021386            9 QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRP-VRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKK   87 (313)
Q Consensus         9 ~~~d~~Vq~T~~~a~~sk~sav~~gy~~Dpfa~~fv~~~-~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~   87 (313)
                      .++|.+||+||+||++||+|||++|||+|||+++||++. .||+|+||||||+|+++||.+|++||+++++       .+
T Consensus        20 ~~~d~~V~~T~~da~~sk~sav~~gY~~Dpf~~~Fv~~~~~rr~P~inrG~~~Rt~~iD~~v~~fl~~~~~-------~~   92 (334)
T 3iei_A           20 DENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTEC-------HC   92 (334)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHTSSCCSSGGGTSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTT-------CS
T ss_pred             CCchhhhhcccHHHHHHHHHHHHcCCCCCHHHHHHcCcccCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-------CC
Confidence            357899999999999999999999999999999999876 7999999999999999999999999998743       68


Q ss_pred             eEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhccc---ccccccCCcccCCCeEEEeccC
Q 021386           88 QILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVT---ASISQAKGEVLGDNYKLLPVDL  164 (313)
Q Consensus        88 QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~---~~~~~~~~~l~s~~y~lv~~DL  164 (313)
                      ||||||||||||+|||.+++.++++|||||+|+|++.|+++|.+++.|++.+|..   .....++..+++++|++|++||
T Consensus        93 QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL  172 (334)
T 3iei_A           93 QIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADL  172 (334)
T ss_dssp             EEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEECCT
T ss_pred             EEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEcccc
Confidence            9999999999999999886335799999999999999999999999988877642   1122334456799999999999


Q ss_pred             CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec----------------ccCCcc
Q 021386          165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SRGCAL  228 (313)
Q Consensus       165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~----------------~rg~~l  228 (313)
                      ++.+||.+.|.++|+|++.|||||+|||||||+++++++||+++++.||+++++.|||                ++|+||
T Consensus       173 ~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~~~g~pl  252 (334)
T 3iei_A          173 RDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDL  252 (334)
T ss_dssp             TCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHHTTTCCC
T ss_pred             ccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998                799999


Q ss_pred             ccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHHHHHHHhhccCCCcHHHHHHHhcCcEEEEEecCCccc-ccc
Q 021386          229 LGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGL-FGD  307 (313)
Q Consensus       229 ~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~a~~~~~~~-~~~  307 (313)
                      +|+..|||+++|.+||.++||+.+.+.||+++|+. +|.+||+||++||+|||||||+++|+||||+||+++...+ +.+
T Consensus       253 ~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~~-l~~~e~~ri~~lE~fDE~EE~~l~~~HY~i~~a~~~~~~~~~~~  331 (334)
T 3iei_A          253 AGVETCKSLESQKERLLSNGWETASAVDMMELYNR-LPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKE  331 (334)
T ss_dssp             TTGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHHHT-SCHHHHHHHHHHSCCCCHHHHHHHHTTEEEEEEEESCTTTTGGG
T ss_pred             cccccCCCHHHHHHHHHHcCCCcceeecHHHHHHh-CCHHHHHHHHhccccccHHHHHHHhCceEEEEEECCCCCCchhh
Confidence            99999999999999999999999999999999975 8999999999999999999999999999999999987654 554


Q ss_pred             c
Q 021386          308 F  308 (313)
Q Consensus       308 ~  308 (313)
                      +
T Consensus       332 ~  332 (334)
T 3iei_A          332 I  332 (334)
T ss_dssp             C
T ss_pred             c
Confidence            4
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} Back     alignment and structure
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Back     alignment and structure
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1rjda_328 c.66.1.37 (A:) Leucine carboxy methyltransferase P 4e-89
d2uyoa1297 c.66.1.57 (A:14-310) Putative methyltransferase ML 1e-14
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  267 bits (683), Expect = 4e-89
 Identities = 64/336 (19%), Positives = 121/336 (36%), Gaps = 63/336 (18%)

Query: 13  AAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR-------------------------- 46
             +Q T+ DA + KL+ +  GY+    +                                
Sbjct: 2   RIIQQTDYDALSCKLAAISVGYLPSSGLQRLSVDLSKKYTEWHRSYLITLKKFSRRAFGK 61

Query: 47  ----PVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
                    P++N G + R   +   + +FL          + K Q+++LG G D     
Sbjct: 62  VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 113

Query: 103 LQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVG-VTASISQAKGEVLGDNYKLLP 161
           L         YV++D+ E    K +++     L+  +G      +++   +    YKL  
Sbjct: 114 LLQMF-PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 172

Query: 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221
            DL DI     +++       +PT +I+EC+L Y+  + S+ ++      FS  ++  Y+
Sbjct: 173 CDLNDITETTRLLD-VCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD 231

Query: 222 Q--------------------SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 261
                                SR   +  +    +       +        +  DM  ++
Sbjct: 232 PIGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMWEIF 289

Query: 262 STFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 297
           +  I   ER+R+  L+  DE EE  +MQ HY +  A
Sbjct: 290 NAQIPESERKRLRSLQFLDELEELKVMQTHYILMKA 325
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Length = 297 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1rjda_328 Leucine carboxy methyltransferase Ppm1 {Baker's ye 100.0
d2uyoa1297 Putative methyltransferase ML2640 {Mycobacterium l 100.0
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 98.08
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 97.96
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 97.55
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 97.19
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 97.06
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 96.42
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 96.4
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 96.35
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 95.78
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.65
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.26
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 95.09
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 95.05
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 94.39
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 93.67
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 93.65
d1g8sa_230 Fibrillarin homologue {Archaeon Methanococcus jann 93.46
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 93.1
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 91.73
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 91.58
d1kpga_285 CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} 90.99
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 90.37
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 89.93
d1inla_295 Spermidine synthase {Thermotoga maritima [TaxId: 2 87.58
d1nt2a_209 Fibrillarin homologue {Archaeon Archaeoglobus fulg 87.14
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 84.35
d1xj5a_290 Spermidine synthase {Thale cress (Arabidopsis thal 83.94
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 83.82
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 82.9
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 82.27
d2g72a1263 Phenylethanolamine N-methyltransferase, PNMTase {H 82.03
d2a14a1257 Indolethylamine N-methyltransferase, INMT {Human ( 81.18
d1iy9a_274 Spermidine synthase {Bacillus subtilis [TaxId: 142 80.55
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-81  Score=588.44  Aligned_cols=276  Identities=23%  Similarity=0.379  Sum_probs=252.0

Q ss_pred             chhhhhhcHHHHHhhhhhhhcCCCCchhHHhhhc------------------------------CCCcCCccccchhHHH
Q 021386           12 KAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR------------------------------RPVRRSPIINRGYFAR   61 (313)
Q Consensus        12 d~~Vq~T~~~a~~sk~sav~~gy~~Dpfa~~fv~------------------------------~~~rr~P~inrG~~~R   61 (313)
                      |.+||+||+||++||+||+++||++|||+.+|+.                              +..|++|+||||||+|
T Consensus         1 D~~Vq~T~~da~~sK~SAv~~GY~~d~~~~~f~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~PlINrGy~~R   80 (328)
T d1rjda_           1 ERIIQQTDYDALSCKLAAISVGYLPSSGLQRLSVDLSKKYTEWHRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLR   80 (328)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHTSCCCTTTTTCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CchhhcccHHHHHHHHHHHHcCCCCchhHHHhhhhccccccccccccccccccccccccccccccccccCCchhhhHHHH
Confidence            6899999999999999999999999999999973                              1236789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcc
Q 021386           62 WAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGV  141 (313)
Q Consensus        62 ~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~  141 (313)
                      +++||.+|++||++++        ++||||||||||||+|||.+. .++++|||||||++++.|+++|++++.|+..+|.
T Consensus        81 t~~id~~v~~Fl~~~~--------~~QVV~LGaG~DTr~~Rl~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~  151 (328)
T d1rjda_          81 TVGIDAAILEFLVANE--------KVQVVNLGCGSDLRMLPLLQM-FPHLAYVDIDYNESVELKNSILRESEILRISLGL  151 (328)
T ss_dssp             HHHHHHHHHHHHHHCS--------SEEEEEETCTTCCTHHHHHHH-CTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCC--------CcEEEEeCCccchHHHHhhcc-CCCcEEEECCcHHHHHHHHHHHHhchhhhhhccc
Confidence            9999999999998875        589999999999999999765 3789999999999999999999999999988875


Q ss_pred             ccc-ccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEE
Q 021386          142 TAS-ISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY  220 (313)
Q Consensus       142 ~~~-~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~y  220 (313)
                      ... ...+...+++++|++++|||++.+++..+ ..+|+|++.|||||+||||+||+++++++||+|+++.||++.||+|
T Consensus       152 ~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l-~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~Y  230 (328)
T d1rjda_         152 SKEDTAKSPFLIDQGRYKLAACDLNDITETTRL-LDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISY  230 (328)
T ss_dssp             CSSCCCCTTEEEECSSEEEEECCTTCHHHHHHH-HHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             cccccccccccCCCCCeEEEecCCCCcHhhHHH-HHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            421 22233357799999999999998887765 4669999999999999999999999999999999999999999999


Q ss_pred             ec--------------------ccCCccccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHHHHHHHhhccCCC
Q 021386          221 EQ--------------------SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFD  280 (313)
Q Consensus       221 e~--------------------~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~er~ri~~lE~fD  280 (313)
                      ||                    .||++|+|+..|||+++|.+||+  ||..+.+.||+++|+.++|++||+||++||+||
T Consensus       231 E~i~~~~p~D~FG~~M~~nl~~~r~~~l~~~~~~~t~~~~~~r~~--~~~~~~~~dm~~~~~~~i~~~er~ri~~LE~fD  308 (328)
T d1rjda_         231 DPIGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWS--AAPNVIVNDMWEIFNAQIPESERKRLRSLQFLD  308 (328)
T ss_dssp             EECCCCSTTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGT--TSSEEEEEEHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred             ccCCCCCCCChHHHHHHHHHHHhcCCCCCccccCCCHHHHHHHHh--cCCccchhhHHHHHHhhCCHHHHHHHhcCccCc
Confidence            98                    37999999999999999999994  999999999999999999999999999999999


Q ss_pred             cHHHHHHHhcCcEEEEEec
Q 021386          281 EFEEWHMMQEHYCVAHAIN  299 (313)
Q Consensus       281 E~Ee~~l~~~HY~i~~a~~  299 (313)
                      |||||+++|+||||++|..
T Consensus       309 E~EE~~l~~~HY~i~~A~~  327 (328)
T d1rjda_         309 ELEELKVMQTHYILMKAQW  327 (328)
T ss_dssp             CHHHHHHHHTTEEEEEEEE
T ss_pred             cHHHHHHHhCCeEEEEEec
Confidence            9999999999999999974
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure