Citrus Sinensis ID: 021403

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Secondary Structure (PSIPRED)
ccEEEEEEEcHHHHHHHHHHcccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccEEEEEEccccccccccccEEEEcccccccccccccccccEEEEEEccccEEEEEccEEEEccEEccccccccccccccccEEEccccEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcHHHHHHHHHHHcccEEcccccccHHHHcccccccccccccccccccccccccccHcHHHccHHHHHccccccccHHHHHHHHHHcccccccccHcccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccEEEEEEEEEEEcccccccEEEEcccHHHHHcccccccHHEEEEEEccccEEEEEccEEEEccccccccHccccccccccccEEcccccEEEc
Coil and Loop (DISEMBL)
MALRVTVNFSGYVAQNlahsagirfgfsttstrsfheclfrprvfchskktdldpppnyqpkanyrCNTLAAeifgdgacnspILMGLVSLMkstagmpgpsatsmgvfgispfkaasiipflqgskwlpcnepgtvpesdyvdkggttdkiqfsgsenlngvSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSflaeprsipsasmnptldvgDRILAEKVSYffkrpevsdivifrappilqeigfssGDVFIKRIVAtagdcvevhggkllvngvaqdedfileplayemdpvvMFPILVLFLF
Flexible Loop (DISEMBL)
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFchskktdldpppnYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQfsgsenlngVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAeprsipsasmnptlDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Low Complexity Region (SEG)
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Disordered region (IsUnstruct)
************************************ECLFRPRVFCHS*************KANYRCNTLAAEIFGDGACNSPILMGLVSLMKS**********SMGVFGISPFKAASIIPFLQGSKWLPCNEPGT***********************LNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEP*********PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFL*
Disordered Region (DISOPRED)
*ALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRV******************************************************************ISPFKAASIIPFLQGSKW****************************************************CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Disordered Region (DISEMBL)
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Disordered Region (DISPRO)
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKK*****PPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKST********T*MGVFGISPFKAASIIPFLQGSKWLPCNE***************************************WLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9M9Z2	367	Probable thylakoidal proc	yes	no	0.923	0.787	0.520	2e-78
O04348	340	Thylakoidal processing pe	no	no	0.875	0.805	0.534	2e-76
Q8H0W1	291	Chloroplast processing pe	no	no	0.437	0.470	0.576	6e-43
P72660	196	Probable signal peptidase	N/A	no	0.341	0.545	0.481	8e-22
P73157	218	Probable signal peptidase	N/A	no	0.389	0.559	0.419	8e-20
Q51876	203	Signal peptidase I OS=Pho	N/A	no	0.354	0.546	0.387	9e-19
Q10789	294	Signal peptidase I OS=Myc	yes	no	0.380	0.404	0.326	2e-10
O33021	289	Probable signal peptidase	yes	no	0.447	0.484	0.284	7e-10
P26844	284	Signal peptidase I OS=Pse	yes	no	0.316	0.348	0.363	1e-09
Q9I5G7	284	Signal peptidase I OS=Pse	no	no	0.322	0.355	0.349	1e-08

>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 165/317 (52%), Positives = 214/317 (67%), Gaps = 28/317 (8%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPP-- 57
           MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR   H++  D+ D  P  
Sbjct: 1   MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGS 58

Query: 58  -NYQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVF 109
             + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M   
Sbjct: 59  NTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGL 114

Query: 110 GISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT--DKIQFSGSENL-NGVSL 165
           GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG     K++   S+ + NG   
Sbjct: 115 GISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNG--- 171

Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
                  W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++A
Sbjct: 172 ----GNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIA 227

Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
           EKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN   
Sbjct: 228 EKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTV 287

Query: 286 QDEDFILEPLAYEMDPV 302
           Q EDF+LEP+ YEM+P+
Sbjct: 288 QAEDFVLEPIDYEMEPM 304

Cleaves the thylakoid-transfer domain from a chloroplast protein.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 8EC: 9

>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/305 (53%), Positives = 208/305 (68%), Gaps = 31/305 (10%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQ 60
           MA+R+T  +S +VA+NL    G R G          E L RPR F H  K D D  P  +
Sbjct: 1   MAIRITFTYSTHVARNLV---GTRVGPGGYC----FESLVRPRFFSH--KRDFDRSPRNR 51

Query: 61  PKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASII 120
           P + Y   ++A E+ G+G+  SP++MGL+S++KST G     +++M V G+S FKA+SII
Sbjct: 52  PASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSII 105

Query: 121 PFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNV 180
           PFLQGSKW+        P  D VDKGGT         E+ NG S        W++KLL+V
Sbjct: 106 PFLQGSKWIK-----NPPVIDDVDKGGTVCDDD-DDKESRNGGS-------GWVNKLLSV 152

Query: 181 CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDI 240
           CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDI
Sbjct: 153 CSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDI 212

Query: 241 VIFRAPPIL---QEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAY 297
           VIF+APPIL    E G+SS DVFIKRIVA+ GD VEV  GKL VN + Q+EDF+LEP++Y
Sbjct: 213 VIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSY 272

Query: 298 EMDPV 302
           EM+P+
Sbjct: 273 EMEPM 277

Cleaves the thylakoid-transfer domain from a chloroplast protein.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 104/137 (75%)

Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
           +++       + L+  SDDA+  F A+ VS  F+ F+AEPR IPS SM PT DVGDR++A
Sbjct: 96  EVEEKNRLFPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVA 155

Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
           EKVSY+F++P  +DIVIF++PP+LQE+G++  DVFIKRIVA  GD VEVH GKL+VNGVA
Sbjct: 156 EKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVA 215

Query: 286 QDEDFILEPLAYEMDPV 302
           ++E FILEP  YEM P+
Sbjct: 216 RNEKFILEPPGYEMTPI 232

Involved in the maturation of the plastid protein translocation channel. Required for the biogenesis of plastid internal membranes. May also function as a thylakoidal processing peptidase.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB1 PE=3 SV=1

 Score =  104 bits (260), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
           + F+AEPR IPS SM PTL+ GDR++ EKVSY F  P+V DI++F  P +LQ  G+  G 
Sbjct: 31  RFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQ 90

Query: 259 VFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFP 306
            FIKR++A  G  VEV+ G +  +G    E++ILEP  Y + P V  P
Sbjct: 91  AFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNL-PAVRVP 137

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB2 PE=3 SV=1

 Score = 97.8 bits (242), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 179 NVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVS 238
           N   +  K   TA+ ++   ++F+AE R IPS+SM PTL + DR++ EK+SY  + PE  
Sbjct: 19  NTWLELGKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERG 78

Query: 239 DIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYE 298
           +IV+F     L+   F   D FIKRI+   GD V V  G + VNG   DE++I  P AYE
Sbjct: 79  EIVVFNPTDALKAKNFH--DAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYE 136

Query: 299 MDPV 302
             PV
Sbjct: 137 YGPV 140

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 70/111 (63%)

Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
           ++ ++   ++F+AE R IPS SM PTL+V DR++ EK+SY F  P   DI++F     L+
Sbjct: 38  SVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALK 97

Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDP 301
           +   S  + FIKR++   G+ V+V GG++L+NG   +E++I  P  Y+  P
Sbjct: 98  QQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGP 148

Phormidium laminosum (taxid: 32059)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 31/150 (20%)

Query: 188 AFTALTVSFLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVI 242
           A  A+ + ++  +F+A P  IPS SM PTL      VGDRI+ +K+SY F  P+  D+++
Sbjct: 72  AVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIV 131

Query: 243 FRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK- 278
           FR PP                      L  IGF   D    +KR++A  G  V+      
Sbjct: 132 FRGPPSWNVGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTG 191

Query: 279 LLVNGVAQDEDFILEPLAYEMDPVVMFPIL 308
           L VNG    E + L+P     DP + +P L
Sbjct: 192 LTVNGRPLKEPY-LDPATMMADPSI-YPCL 219

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN) GN=lepB PE=3 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 39/179 (21%)

Query: 151 KIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPS 210
           ++  + +E   GVS   K S  W   +L         A  A+ + ++  +F+A P  IPS
Sbjct: 32  EVSETAAEAAIGVSEPKKRSALWEFAIL---------AVIAIGLYYVMLTFVARPYLIPS 82

Query: 211 ASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP------------------ 247
            SM PTL      VGDRI+ +K++Y F  P+  D+++F+ PP                  
Sbjct: 83  ESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRS 142

Query: 248 ---ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFILEPLAYEMD 300
               L  +GF   D    +KR++A  G  V+      L VNG    E + L P+    D
Sbjct: 143 VQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPY-LRPVTMNAD 200

Mycobacterium leprae (taxid: 1769)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|P26844|LEP_PSEFL Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 22/121 (18%)

Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVS------ 238
            K+ F  L +  + +SFL EP  IPS SM PTLDVGD IL  K SY  + P +       
Sbjct: 63  GKSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVIDKKVIEV 122

Query: 239 ------DIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDF 290
                 D+++FR P        S  +V +IKR+V   GD V     K L +NG +  E  
Sbjct: 123 GDPQRGDVMVFRYP--------SDPNVNYIKRVVGLPGDVVRYTSDKRLFINGESVAEKL 174

Query: 291 I 291
           +
Sbjct: 175 L 175

Pseudomonas fluorescens (taxid: 294)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

>sp|Q9I5G7|LEP_PSEAE Signal peptidase I OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lepB PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 22/123 (17%)

Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK----------- 233
            K+ F  L +  + +SFL EP  IPS SM PTL+VGD IL  K +Y  +           
Sbjct: 63  GKSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLEVGDFILVNKFAYGIRLPVLDTKVIPI 122

Query: 234 -RPEVSDIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDF 290
             P+  D+++FR P        S  ++ +IKR+V   GD V     K L VNG    E  
Sbjct: 123 GDPQRGDVMVFRYP--------SEPNINYIKRVVGLPGDTVRYTKEKRLYVNGELVAEKL 174

Query: 291 ILE 293
           + E
Sbjct: 175 VGE 177

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 8

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
225458489	368	PREDICTED: probable thylakoidal processi	0.932	0.793	0.609	1e-97
356510334	362	PREDICTED: probable thylakoidal processi	0.920	0.795	0.588	2e-93
356519126	362	PREDICTED: probable thylakoidal processi	0.923	0.798	0.587	3e-93
255538440	831	signal peptidase I, putative [Ricinus co	0.942	0.354	0.566	2e-90
449498740	763	PREDICTED: uncharacterized protein LOC10	0.948	0.389	0.579	2e-89
357465373	334	Thylakoidal processing peptidase [Medica	0.948	0.889	0.556	2e-88
357465371	375	Thylakoidal processing peptidase [Medica	0.948	0.792	0.556	4e-88
224136660	362	predicted protein [Populus trichocarpa]	0.932	0.806	0.570	4e-87
449447223	761	PREDICTED: uncharacterized protein LOC10	0.932	0.383	0.576	8e-87
297822765	339	chloroplast thylakoidal processing pepti	0.865	0.799	0.537	2e-77

>gi|225458489|ref|XP_002284120.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic [Vitis vinifera] gi|147810057|emb|CAN78280.1| hypothetical protein VITISV_021649 [Vitis vinifera]

 Score =  362 bits (928), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/320 (60%), Positives = 238/320 (74%), Gaps = 28/320 (8%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPP-PNY 59
           MA+++TV +SGYVAQNLA SAGIR G    + RS HEC  R R FC S+K ++D P P+ 
Sbjct: 1   MAIKLTVTYSGYVAQNLASSAGIRVG----NCRSIHECWVRSRFFCPSQKPEVDSPVPSR 56

Query: 60  QPKANYR-----C---------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATS 105
             +A+YR     C         +TLA E+FGD +C +P+++GL+SLMKS+ G+   S +S
Sbjct: 57  AYQADYRRPKANCWAKVSTSAYSTLAGEVFGD-SCRNPLIVGLISLMKSSTGV---SESS 112

Query: 106 MGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNG-VS 164
           +GVFG+SP KA SI+PFL GSKWLPCNEP      D VDKGGT    Q    E ++  + 
Sbjct: 113 VGVFGVSPLKATSILPFLPGSKWLPCNEPIQGSVGDEVDKGGT----QCCDVEVISKPLD 168

Query: 165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
            ++    +WLSKLLN CS+DA+A FTA+TVS LF+S LAEPRSIPSASM PTLDVGDRIL
Sbjct: 169 RKVLERSNWLSKLLNCCSEDARAVFTAVTVSLLFRSPLAEPRSIPSASMYPTLDVGDRIL 228

Query: 225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
           AEKVSY F+ PEVSDIVIF+ PPILQEIG+S+GDVFIKRIVA AGD VEV  GKL+VNGV
Sbjct: 229 AEKVSYVFRNPEVSDIVIFKVPPILQEIGYSAGDVFIKRIVAKAGDYVEVSEGKLMVNGV 288

Query: 285 AQDEDFILEPLAYEMDPVVM 304
           AQ+EDFILEPLAY MDPV++
Sbjct: 289 AQEEDFILEPLAYNMDPVLV 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510334|ref|XP_003523894.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like [Glycine max]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/316 (58%), Positives = 229/316 (72%), Gaps = 28/316 (8%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLD------ 54
           MA+RVT +FSGYVAQ+LA SAG+R      ++R   EC  R R+   ++KTDLD      
Sbjct: 1   MAIRVTFSFSGYVAQSLASSAGVRVA----NSRCVQECWIRTRLSGATQKTDLDSSAGGV 56

Query: 55  -----PPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVF 109
                P PN   ++ Y  +TL  E  GDG C SPI++GL+S+MKSTAG+ G SA + G+F
Sbjct: 57  RNFAGPKPNCWAQSTY--STLTGEFLGDG-CKSPIILGLISIMKSTAGVSGSSAAAAGIF 113

Query: 110 GISPFKAASIIPFLQGSKWLPCNEPGTVPESDY-VDKGGTTDKIQFSGSENLNGVSLQLK 168
           GISPFK  SI+PFL GSKWLPCNE    P + + VDKGGT   +  + S          K
Sbjct: 114 GISPFKTTSIVPFLPGSKWLPCNESVPDPTTSWEVDKGGTRRVVSDTESN-------FAK 166

Query: 169 TSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKV 228
           TS  WLS+L+NVCS+DAKAAFTA+TVS LFKS LAEPRSIPS+SM PTL+VGDR+L EKV
Sbjct: 167 TS--WLSRLMNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKV 224

Query: 229 SYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDE 288
           S+FF++P+VSDIVIF+APP L+E GFSS DVFIKRIVA AGD VEV  GKLLVNG A++ 
Sbjct: 225 SFFFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLVNGAAEER 284

Query: 289 DFILEPLAYEMDPVVM 304
            F++EPLAYEMDP+V+
Sbjct: 285 QFVVEPLAYEMDPMVV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519126|ref|XP_003528225.1| PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic-like [Glycine max]

 Score =  347 bits (891), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 185/315 (58%), Positives = 228/315 (72%), Gaps = 26/315 (8%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFC-HSKKTDLDPP--- 56
           MA+RVT +FSGYVAQ+LA SAG+R      ++R   EC  R R+F   ++KTDLD     
Sbjct: 1   MAIRVTFSFSGYVAQSLASSAGVR----VANSRCVQECWIRTRLFGGATQKTDLDSSAGG 56

Query: 57  -------PNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVF 109
                  PN   ++ Y  ++LA E  GDG   SPI++GL+S+MKST G+ G SA + G+F
Sbjct: 57  GVRNFARPNCWAQSTY--SSLAGEFLGDGCSKSPIILGLISIMKSTVGVSGSSAAAAGIF 114

Query: 110 GISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKT 169
           GISPFK  SIIPFL GSKWLPCNE    P S  VDKGGT   +  + S N   +S     
Sbjct: 115 GISPFKTTSIIPFLPGSKWLPCNESVPDPTSWEVDKGGTRRVVSETES-NFAKIS----- 168

Query: 170 SGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVS 229
              WLS+L+NVCS+DAKAAFTALTVS LFKS LAEPRSIPS+SM PTL+VGDR+L EKVS
Sbjct: 169 ---WLSRLMNVCSEDAKAAFTALTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVS 225

Query: 230 YFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDED 289
           +FF++P+VSDIVIF+APP L+E GFSS DVFIKRIVA AGD VEV  GKLL+NG A++++
Sbjct: 226 FFFRKPDVSDIVIFKAPPWLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLINGAAEEQE 285

Query: 290 FILEPLAYEMDPVVM 304
           F+LE LAYEMDP+V+
Sbjct: 286 FVLEALAYEMDPMVV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538440|ref|XP_002510285.1| signal peptidase I, putative [Ricinus communis] gi|223550986|gb|EEF52472.1| signal peptidase I, putative [Ricinus communis]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/337 (56%), Positives = 231/337 (68%), Gaps = 42/337 (12%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCH--SKKTDLDPPP- 57
           MA+RVT  +SGYVAQ++A  AGIR G    + RS HEC  R R+F    ++  DL+PP  
Sbjct: 1   MAIRVTFTYSGYVAQSIASCAGIRVG----NCRSLHECFVRSRIFASPTNQNVDLEPPAP 56

Query: 58  ---------NYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGV 108
                     Y+  +    +T+A EIFG+  C SPI +GL+ LMKSTAG+ G S  S GV
Sbjct: 57  RPSRVFQSGGYRKSSTSLYSTIAGEIFGNN-CKSPIAVGLIELMKSTAGV-GVSG-STGV 113

Query: 109 FGISPFKAASIIPFLQGSKWLPCNEPG---------TVPESDYVDKGGTTDKIQFSGSE- 158
           FGISP KA+SI+P LQGS+WLPCNEP          T   S  VD+GGT   ++   S  
Sbjct: 114 FGISPLKASSILPVLQGSRWLPCNEPSPGQKNNEPSTRQNSSDVDRGGTVKCVKNGSSSS 173

Query: 159 -----------NLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRS 207
                       +NG   +L   GSWLS++L+  S+DAKA FTA TV+FLF+S LAEPRS
Sbjct: 174 CCTTATTTVTLEINGN--ELDKGGSWLSRVLSSFSEDAKAIFTAATVNFLFRSALAEPRS 231

Query: 208 IPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267
           IPS SM PTLDVGDR+LAEKVS+ F++PEVSDIVIF+APPILQEIG+SSGDVFIKRIVAT
Sbjct: 232 IPSTSMCPTLDVGDRVLAEKVSFIFRQPEVSDIVIFKAPPILQEIGYSSGDVFIKRIVAT 291

Query: 268 AGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVM 304
           AGD VEV  GKL VNGV Q EDFILEPLAYEM+PV++
Sbjct: 292 AGDIVEVREGKLYVNGVIQHEDFILEPLAYEMEPVLV 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498740|ref|XP_004160620.1| PREDICTED: uncharacterized protein LOC101229456 [Cucumis sativus]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/319 (57%), Positives = 223/319 (69%), Gaps = 22/319 (6%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPP---P 57
           MA+RVTV+FSGYVAQNLA SAGIR G    + R+ HEC  R R+F  ++K + DP     
Sbjct: 1   MAIRVTVSFSGYVAQNLASSAGIRVG----NCRAVHECWIRSRLFGSNQKPEFDPSGSVR 56

Query: 58  NYQPK---ANYRC---------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATS 105
           NY      +N RC          T+A EI  D +C +PI++GL+SLMKS  G    S  +
Sbjct: 57  NYHSAVLPSNSRCWVKNSASALGTIAGEIV-DESCRNPIVLGLISLMKSAVGTSVSSPMA 115

Query: 106 MGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSL 165
           MGVFG+S F+A+SIIPFLQGSK +  NE  +    D ++  G  D +   G       S 
Sbjct: 116 MGVFGVSSFEASSIIPFLQGSKTVTGNESVSGSTGDEIESYGVFDCVMDEGMSQPPDPSK 175

Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
             K+S  W+S+ LN CS+DAKA  TALTVS LF+S LAEPRSIPS+SM PTLDVGDRILA
Sbjct: 176 LEKSS--WISRFLNNCSEDAKAIATALTVSVLFRSSLAEPRSIPSSSMYPTLDVGDRILA 233

Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
           EKVSYFF+RP VSDIVIF+APPILQ+IG+ S DVFIKRIVA AGDCVEV  GKLLVNGVA
Sbjct: 234 EKVSYFFRRPSVSDIVIFKAPPILQKIGYKSNDVFIKRIVAKAGDCVEVRDGKLLVNGVA 293

Query: 286 QDEDFILEPLAYEMDPVVM 304
           Q+E FILEPL+Y MDPV++
Sbjct: 294 QNEKFILEPLSYNMDPVLV 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465373|ref|XP_003602968.1| Thylakoidal processing peptidase [Medicago truncatula] gi|355492016|gb|AES73219.1| Thylakoidal processing peptidase [Medicago truncatula]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 228/320 (71%), Gaps = 23/320 (7%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQ 60
           MA+RVT +FSGYVAQNL  SAG+R      ++R   EC    R+F  + K DL+    ++
Sbjct: 1   MAIRVTFSFSGYVAQNLVSSAGVR----VANSRCVQECCILSRLFGSNPKPDLERSGGFR 56

Query: 61  PKANYR------------CNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGV 108
            +  Y              +TLA EI  + +CN+PI++GL+S+MKSTA + G ++ +MG 
Sbjct: 57  NRNLYSDFTKPRNSPVSVYSTLAGEILSE-SCNNPIILGLISMMKSTA-ISGSTSAAMGA 114

Query: 109 FGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQ----FSGSENLNGVS 164
            GISPFK +SIIPFLQGSKWLPCNE      +  VDKGGT  + Q     S  E+   ++
Sbjct: 115 MGISPFKTSSIIPFLQGSKWLPCNESVPTATTWEVDKGGTRIQSQPVSVSSDKESRLDLN 174

Query: 165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
            +  T+G W+SKLLNVCS+DAKA FTA+TVS LFKSFLAEP+SIPSASM PTL+VGDR+L
Sbjct: 175 QKENTNG-WISKLLNVCSEDAKAVFTAVTVSLLFKSFLAEPKSIPSASMYPTLEVGDRVL 233

Query: 225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
            EK S+FF++P+VSDIVIF+AP  L+  GFSS DVFIKR+VA AGD VEV  GKLLVNGV
Sbjct: 234 TEKFSFFFRKPDVSDIVIFKAPSWLKAYGFSSSDVFIKRVVAKAGDVVEVRDGKLLVNGV 293

Query: 285 AQDEDFILEPLAYEMDPVVM 304
           A+DE+F+LEPLAYE+ P+V+
Sbjct: 294 AEDEEFVLEPLAYELAPMVV 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465371|ref|XP_003602967.1| Thylakoidal processing peptidase [Medicago truncatula] gi|355492015|gb|AES73218.1| Thylakoidal processing peptidase [Medicago truncatula]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/320 (55%), Positives = 228/320 (71%), Gaps = 23/320 (7%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQ 60
           MA+RVT +FSGYVAQNL  SAG+R      ++R   EC    R+F  + K DL+    ++
Sbjct: 1   MAIRVTFSFSGYVAQNLVSSAGVR----VANSRCVQECCILSRLFGSNPKPDLERSGGFR 56

Query: 61  PKANYR------------CNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGV 108
            +  Y              +TLA EI  + +CN+PI++GL+S+MKSTA + G ++ +MG 
Sbjct: 57  NRNLYSDFTKPRNSPVSVYSTLAGEILSE-SCNNPIILGLISMMKSTA-ISGSTSAAMGA 114

Query: 109 FGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQ----FSGSENLNGVS 164
            GISPFK +SIIPFLQGSKWLPCNE      +  VDKGGT  + Q     S  E+   ++
Sbjct: 115 MGISPFKTSSIIPFLQGSKWLPCNESVPTATTWEVDKGGTRIQSQPVSVSSDKESRLDLN 174

Query: 165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
            +  T+G W+SKLLNVCS+DAKA FTA+TVS LFKSFLAEP+SIPSASM PTL+VGDR+L
Sbjct: 175 QKENTNG-WISKLLNVCSEDAKAVFTAVTVSLLFKSFLAEPKSIPSASMYPTLEVGDRVL 233

Query: 225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
            EK S+FF++P+VSDIVIF+AP  L+  GFSS DVFIKR+VA AGD VEV  GKLLVNGV
Sbjct: 234 TEKFSFFFRKPDVSDIVIFKAPSWLKAYGFSSSDVFIKRVVAKAGDVVEVRDGKLLVNGV 293

Query: 285 AQDEDFILEPLAYEMDPVVM 304
           A+DE+F+LEPLAYE+ P+V+
Sbjct: 294 AEDEEFVLEPLAYELAPMVV 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136660|ref|XP_002326914.1| predicted protein [Populus trichocarpa] gi|222835229|gb|EEE73664.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/333 (57%), Positives = 225/333 (67%), Gaps = 41/333 (12%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCH------SKKTDLD 54
           MA+RVT +FSGYVAQNL    G+R G    + R  +EC  R R+F        +  +D++
Sbjct: 1   MAIRVTFSFSGYVAQNL----GVRVG----NCRYLNECFIRSRIFASPATTTTTHNSDIE 52

Query: 55  PP--------PNYQPKANYR-----CNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGP 101
           PP             K NY       +T+A EIFGD    S I +GLVSLMKSTAG+   
Sbjct: 53  PPGPRTGTDFRRRNLKRNYSNSAAMYSTMAGEIFGDNCKGSAIAVGLVSLMKSTAGV--- 109

Query: 102 SATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGT-TDKIQFSGSENL 160
           S ++MG  GISPFKA SI+PFLQGS+WLPCNE      S  VD+GGT T K     SE+ 
Sbjct: 110 SCSNMGACGISPFKAVSILPFLQGSRWLPCNEAVLGSRSPEVDRGGTGTVKSVEKVSES- 168

Query: 161 NGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVG 220
                    S SW S++ NVCS+DAKA FTA TVS LF+S LAEPRSIPS+SM+PTLDVG
Sbjct: 169 --------KSRSWFSRVFNVCSEDAKAMFTAATVSLLFRSTLAEPRSIPSSSMSPTLDVG 220

Query: 221 DRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLL 280
           DRILAEKVSY F++PEVSDIVIF+APPILQE GFSSGDVFIKRIVA AGD VEV  GKL 
Sbjct: 221 DRILAEKVSYVFRKPEVSDIVIFKAPPILQEFGFSSGDVFIKRIVAKAGDYVEVREGKLY 280

Query: 281 VNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF 313
           VNGV QDE+FI EPLAYEM+ +V+ P   +F+ 
Sbjct: 281 VNGVVQDEEFIKEPLAYEME-LVLVPEGYVFVM 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447223|ref|XP_004141368.1| PREDICTED: uncharacterized protein LOC101221060, partial [Cucumis sativus]

 Score =  326 bits (836), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 181/314 (57%), Positives = 218/314 (69%), Gaps = 22/314 (7%)

Query: 6   TVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPP---PNYQPK 62
           TV+FSGYVAQNLA SAGIR G    + R+ HEC  R R+F  ++K + DP     NY   
Sbjct: 1   TVSFSGYVAQNLASSAGIRVG----NCRAVHECWIRSRLFGSNQKPEFDPSGSVRNYHSA 56

Query: 63  ---ANYRC---------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFG 110
              +N RC          T+A EI  D +C +PI++GL+SLMKS  G    S  +MGVFG
Sbjct: 57  VLPSNSRCWVKNSASALGTIAGEIV-DESCRNPIVLGLISLMKSAVGTSVSSPMAMGVFG 115

Query: 111 ISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTS 170
           +S F+A+SIIPFLQGSK +  NE  +    D ++  G  D +   G       S   K+S
Sbjct: 116 VSSFEASSIIPFLQGSKTVTGNESVSGSTGDEIESYGVFDCVMDEGMSQPPDPSKLEKSS 175

Query: 171 GSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY 230
             W+S+ LN CS+DAKA  TALTVS LF+S LAEPRSIPS+SM PTLDVGDRILAEKVSY
Sbjct: 176 --WISRFLNNCSEDAKAIATALTVSVLFRSSLAEPRSIPSSSMYPTLDVGDRILAEKVSY 233

Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDF 290
           FF+RP VSDIVIF+APPILQ+IG+ S DVFIKRIVA AGDCVEV  GKLLVNGVAQ+E F
Sbjct: 234 FFRRPSVSDIVIFKAPPILQKIGYKSNDVFIKRIVAKAGDCVEVRDGKLLVNGVAQNEKF 293

Query: 291 ILEPLAYEMDPVVM 304
           ILEPL+Y MDPV++
Sbjct: 294 ILEPLSYNMDPVLV 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822765|ref|XP_002879265.1| chloroplast thylakoidal processing peptidase [Arabidopsis lyrata subsp. lyrata] gi|297325104|gb|EFH55524.1| chloroplast thylakoidal processing peptidase [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 165/307 (53%), Positives = 213/307 (69%), Gaps = 36/307 (11%)

Query: 1   MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQ 60
           MA+R+T  +S +VA+NL    GIR G      R   E   RPR F H  K D D    Y+
Sbjct: 1   MAIRITFTYSTHVARNLV---GIRPG---GDLRCCFESFVRPRFFTH--KRDFDKSSRYR 52

Query: 61  PKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASII 120
           P + Y   ++A E+ G+G+ N P++MGL+S+++ST+ +P  S+T+M V G+S FKA+SII
Sbjct: 53  PPSMY--GSIAKELIGEGSQN-PLVMGLISILRSTS-VP-ESSTTMNVLGVSSFKASSII 107

Query: 121 PFLQGSKWLPCNEPGTVPESDYVDKGGT-----TDKIQFSGSENLNGVSLQLKTSGSWLS 175
           PFLQGSKW+        PE D VDKGGT      DK   SG                W++
Sbjct: 108 PFLQGSKWM-----KNPPEVDDVDKGGTLCDDDDDKESRSGG-------------SGWVN 149

Query: 176 KLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRP 235
           KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++AEKVSYFF++P
Sbjct: 150 KLLNICSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDVGDRVMAEKVSYFFRKP 209

Query: 236 EVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPL 295
           EVSDIVIF+APPIL +  +SS DVFIKRIVA+ G+ VEV  GKLLVN + Q+EDF+LEP+
Sbjct: 210 EVSDIVIFKAPPILLDYDYSSNDVFIKRIVASEGNWVEVRDGKLLVNDIVQEEDFVLEPM 269

Query: 296 AYEMDPV 302
           +YEM+P+
Sbjct: 270 SYEMEPM 276

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2033108	367	Plsp2A "plastidic type I signa	0.920	0.784	0.528	6.5e-74
TAIR|locus:2064337	340	TPP "thylakoid processing pept	0.654	0.602	0.602	2.3e-62
TAIR|locus:2091717	291	PLSP1 "plastidic type i signal	0.399	0.429	0.632	8.7e-40
UNIPROTKB|Q10789	294	lepB "Signal peptidase I" [Myc	0.226	0.241	0.402	4.7e-10
TIGR_CMR|CHY_1360	184	CHY_1360 "signal peptidase I"	0.402	0.684	0.297	5.1e-10
TIGR_CMR|DET_1192	192	DET_1192 "signal peptidase I"	0.271	0.442	0.362	2.6e-08
TIGR_CMR|BA_3977	183	BA_3977 "signal peptidase I S"	0.309	0.530	0.320	2e-07
TIGR_CMR|VC_2462	298	VC_2462 "signal peptidase I" [	0.402	0.422	0.326	4.3e-07
TIGR_CMR|SO_2924	220	SO_2924 "signal peptidase I fa	0.332	0.472	0.319	9.2e-07
TIGR_CMR|CBU_1504	256	CBU_1504 "signal peptidase I"	0.341	0.417	0.267	2.3e-06

TAIR|locus:2033108 Plsp2A "plastidic type I signal peptidase 2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 168/318 (52%), Positives = 217/318 (68%)

Query:     1 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFC-HSKKTDL-DPPPN 58
             MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR FC H++  D+ D  P 
Sbjct:     1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPR-FCGHNQIPDIVDKSPG 57

Query:    59 ---YQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGV 108
                + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M  
Sbjct:    58 SNTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTG 113

Query:   109 FGISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT-D-KIQFSGSENL-NGVS 164
              GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG   D K++   S+ + NG  
Sbjct:   114 LGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNG-- 171

Query:   165 LQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRIL 224
                     W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++
Sbjct:   172 -----GNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVI 226

Query:   225 AEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284
             AEKVSYFF++PEVSDIVIF+APPIL E G+S  DVFIKRIVA+ GD VEV  GKLLVN  
Sbjct:   227 AEKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDT 286

Query:   285 AQDEDFILEPLAYEMDPV 302
              Q EDF+LEP+ YEM+P+
Sbjct:   287 VQAEDFVLEPIDYEMEPM 304

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2064337 TPP "thylakoid processing peptide" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 135/224 (60%), Positives = 168/224 (75%)

Query:    82 SPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESD 141
             SP++MGL+S++KST G     +++M V G+S FKA+SIIPFLQGSKW+    P   P  D
Sbjct:    70 SPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSIIPFLQGSKWI--KNP---PVID 121

Query:   142 YVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSF 201
              VDKGGT         E+ NG S        W++KLL+VCS+DAKAAFTA+TVS LF+S 
Sbjct:   122 DVDKGGTVCDDD-DDKESRNGGS-------GWVNKLLSVCSEDAKAAFTAVTVSILFRSA 173

Query:   202 LAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPIL---QEIGFSSGD 258
             LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDIVIF+APPIL    E G+SS D
Sbjct:   174 LAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSND 233

Query:   259 VFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPV 302
             VFIKRIVA+ GD VEV  GKL VN + Q+EDF+LEP++YEM+P+
Sbjct:   234 VFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSYEMEPM 277

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0006465 "signal peptide processing" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2091717 PLSP1 "plastidic type i signal peptidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 79/125 (63%), Positives = 100/125 (80%)

Query:   178 LNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEV 237
             L+  SDDA+  F A+ VS  F+ F+AEPR IPS SM PT DVGDR++AEKVSY+F++P  
Sbjct:   108 LDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCA 167

Query:   238 SDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAY 297
             +DIVIF++PP+LQE+G++  DVFIKRIVA  GD VEVH GKL+VNGVA++E FILEP  Y
Sbjct:   168 NDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARNEKFILEPPGY 227

Query:   298 EMDPV 302
             EM P+
Sbjct:   228 EMTPI 232

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS;IMP

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009526 "plastid envelope" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0051604 "protein maturation" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

UNIPROTKB|Q10789 lepB "Signal peptidase I" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 141 (54.7 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 31/77 (40%), Positives = 46/77 (59%)

Query:   185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSD 239
             A  A  A+ + ++  +F+A P  IPS SM PTL      VGDRI+ +K+SY F  P+  D
Sbjct:    69 AVLAVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGD 128

Query:   240 IVIFRAPPILQEIGFSS 256
             +++FR PP    +G+ S
Sbjct:   129 VIVFRGPPSWN-VGYKS 144

GO:0005576 "extracellular region" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|CHY_1360 CHY_1360 "signal peptidase I" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 148 (57.2 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 41/138 (29%), Positives = 70/138 (50%)

Query:   170 SGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVS 229
             S SW +++    S    AA  A+ ++F+ K+F+ +   +P+ SM PT+   DR++  K  
Sbjct:    12 SFSWKNEIKEFIS----AAIWAVILAFIIKTFIFQLTYVPTGSMIPTILPNDRVVVLKFW 67

Query:   230 YFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDED 289
             Y  K  E   IV+F  PP       ++   FIKR++   G+ +E+    + +NG    E+
Sbjct:    68 YKIKPIERGQIVVFD-PP-----NSANSPPFIKRVIGLPGETLEIKNNTVYINGKPLKEN 121

Query:   290 FILEPLAYEMDPVVMFPI 307
             ++  P   EM+P   F I
Sbjct:   122 YL--PAKMEMEPFGPFKI 137

GO:0006465 "signal peptide processing" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|DET_1192 DET_1192 "signal peptidase I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 138 (53.6 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query:   208 IPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267
             +  +SM+PTL    R+L  K++Y F  P+  DI++F  PP  Q   +S  + FIKRI+  
Sbjct:    42 VDGSSMDPTLKDEQRLLVNKLAYLFGEPQRGDIIVF--PPPEQ---YSYENDFIKRIIGL 96

Query:   268 AGDCVEV-HGGKLLVNGVAQDEDFILEPLAY 297
              GD VEV   G + +N     E +++ P A+
Sbjct:    97 PGDSVEVKEDGTVYINDQPLSEPYVVYPKAF 127

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|BA_3977 BA_3977 "signal peptidase I S" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 131 (51.2 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 34/106 (32%), Positives = 52/106 (49%)

Query:   186 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRA 245
             KA   A+ ++ + + F   P  +   SM  TL   DR++  K+ Y    P+  DI++FRA
Sbjct:    13 KAILIAVVLAGVIRQFFFAPILVDGVSMASTLHDRDRMIVNKIGYHIGDPKRFDIIVFRA 72

Query:   246 PPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
                         D +IKRI+   GD +E    KL VNG A +E ++
Sbjct:    73 T--------EDKD-YIKRIIGLPGDEIEYRNDKLYVNGKAYEEPYL 109

GO:0006508 "proteolysis" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|VC_2462 VC_2462 "signal peptidase I" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 49/150 (32%), Positives = 70/150 (46%)

Query:   148 TTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNVCS-----DDAKAAFTALTVSFLFKSFL 202
             T +K+ ++         LQ +T     S L  V +     +++ + F  +    + +SF+
Sbjct:    21 TLEKLVWAKKRQQKQAHLQAQTPDMPASALDKVVAQPWWIENSVSIFPVIAFVLVLRSFI 80

Query:   203 AEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFRAPPILQ 250
              EP  IPS SM PTL VGD IL EK +Y  K            +PE  DIV+F+ P +  
Sbjct:    81 YEPFQIPSGSMMPTLLVGDFILVEKYAYGLKDPVWRTQLVETGKPERGDIVVFKYP-VNP 139

Query:   251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLL 280
             EI +      IKR+V   GD V    GK L
Sbjct:   140 EIDY------IKRVVGMPGDTVRYSAGKEL 163

GO:0006465 "signal peptide processing" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|SO_2924 SO_2924 "signal peptidase I family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 133 (51.9 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 38/119 (31%), Positives = 64/119 (53%)

Query:   192 LTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQE 251
             +++  +F+S +A+  ++P+ SM PT+  GDRIL  K++Y  + P     ++  A P+  +
Sbjct:    19 ISLMLVFRSAVADWNTVPTGSMLPTIVEGDRILVNKMAYDVRVPFTHIALVKLADPVRGD 78

Query:   252 IG-FSSGDV---FIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFP 306
             I  F S +     IKR++A  GD V +   +L +NG         EPLAY+  P  + P
Sbjct:    79 IVVFDSKNADKRLIKRVIAVPGDTVMMRDNRLYLNG---------EPLAYK--PQALSP 126

GO:0006508 "proteolysis" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

TIGR_CMR|CBU_1504 CBU_1504 "signal peptidase I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 30/112 (26%), Positives = 58/112 (51%)

Query:   185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFR 244
             AK  F  L + ++ +SF+ +P  +P+ S+ PT+  GD I  E+ +Y  + P ++  ++  
Sbjct:    44 AKTFFPVLLIVWVVRSFIIQPYHVPTGSLEPTVMPGDFIAVEQFAYGLRLPVLNKKILPI 103

Query:   245 APPILQEIGFSSGD-----VFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
             + P   +I           VF+KR++   GD +     +L +NG  Q ++F+
Sbjct:   104 SEPKRGQIALFRWPKDPKIVFVKRVIGLPGDHIVYKNKRLYINGQEQKQNFL 155

GO:0006465 "signal peptide processing" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M9Z2	TPP2_ARATH	3, ., 4, ., 2, 1, ., 8, 9	0.5205	0.9233	0.7874	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.921
3rd Layer	3.4.21.89	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014743001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (345 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019235001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (603 aa)	•						•		0.509

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
TIGR02227	163	TIGR02227, sigpep_I_bact, signal peptidase I, bact	1e-24
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	4e-16
PRK10861	324	PRK10861, PRK10861, signal peptidase I; Provisiona	2e-11
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	2e-11
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	2e-08
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	2e-07
pfam10502	138	pfam10502, Peptidase_S26, Signal peptidase, peptid	2e-05

>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type

 Score = 97.3 bits (243), Expect = 1e-24
 Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 7/106 (6%)

Query: 186 KAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRA 245
            +   A+ ++ L ++F+  P  +P  SM PTL  GDRIL  K +Y    P+  DIV+F+ 
Sbjct: 3   LSLLIAILLALLIRTFVFFPYKVPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKD 62

Query: 246 PPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
           P         + +++IKR++   GD VE   GKL +NG   DE ++
Sbjct: 63  PD-------DNKNIYIKRVIGLPGDKVEFRDGKLYINGKKIDEPYL 101

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 204 EPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKR 263
           EP  +P  SM PTL  GD +L  K+SY F+ P+  D+V+F++P          G   IKR
Sbjct: 1   EPVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPG-------DPGKPIIKR 53

Query: 264 IVA--TAGD 270
           ++     GD
Sbjct: 54  VIGYFVLGD 62

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 37/98 (37%), Positives = 48/98 (48%), Gaps = 23/98 (23%)

Query: 189 FTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPE 236
           F  L +  + +SF+ EP  IPS SM PTL +GD IL EK +Y  K             P+
Sbjct: 68  FPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPITQTTLIETGHPK 127

Query: 237 VSDIVIFRAP--PILQEIGFSSGDVFIKRIVATAGDCV 272
             DIV+F+ P  P L          +IKR+V   GD V
Sbjct: 128 RGDIVVFKYPEDPKLD---------YIKRVVGLPGDKV 156

Length = 324

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 11/129 (8%)

Query: 172 SWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYF 231
             L K L + S    A   AL +      F+ EP  +PS SM PTL+VGDR+L +K SY 
Sbjct: 2   KRLLKFLELISSLLIAIILALIIGVRT--FVFEPVVVPSGSMEPTLNVGDRVLVKKFSYG 59

Query: 232 FKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
           F + +V DI++                  IKR++   GD V     +L V  +      +
Sbjct: 60  FGKLKVPDIIVL---------PAVVEGDLIKRVIGLRGDIVVFKDDRLYVVPIIPRVYGL 110

Query: 292 LEPLAYEMD 300
           +E    +  
Sbjct: 111 VEKDNGKHL 119

Length = 166

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 208 IPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267
           +   SM PT+  GD +L +K SY    P+  DIV+FR P          G++ +KR++  
Sbjct: 5   VEGDSMEPTIPDGDLVLVDKSSY---EPKRGDIVVFRLP---------GGELTVKRVIGL 52

Query: 268 AG-DCVEVHG 276
            G     + G
Sbjct: 53  PGEGHYFLLG 62

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 17/80 (21%)

Query: 208 IPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT 267
           +   SM PT+  GD +L +K       P+  DIV+ R             +  +KR++  
Sbjct: 2   VKGDSMEPTIPDGDLLLVDK----TSEPKRGDIVVARLDG---------EEATVKRLIGL 48

Query: 268 AGDCVEVH----GGKLLVNG 283
            GD + +        + +NG
Sbjct: 49  PGDIILLPSNPEYPPIYING 68

Length = 69

>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 234 RPEVSDIVIFRAPP----ILQEIGF-SSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
           RPEV D+V    P        E G+   G   +KR++A  G  V +  G + ++GV 
Sbjct: 21  RPEVGDLVAVCPPEPAAFFAAERGYLPRGVPLLKRVLALPGQRVCIRDGLVTIDGVP 77

This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	99.96
PRK10861	324	signal peptidase I; Provisional	99.93
KOG0171	176	consensus Mitochondrial inner membrane protease, s	99.82
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.66
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.58
PRK13884	178	conjugal transfer peptidase TraF; Provisional	99.51
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	99.51
KOG1568	174	consensus Mitochondrial inner membrane protease, s	99.46
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.43
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	99.28
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.27
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.25
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.09
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	98.64
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	98.59
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	98.31
COG2932	214	Predicted transcriptional regulator [Transcription	98.24
PRK00215	205	LexA repressor; Validated	97.69
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	97.58
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	97.57
PRK12423	202	LexA repressor; Provisional	97.56
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	97.5
COG1974	201	LexA SOS-response transcriptional repressors (RecA	94.4
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	92.17
PF12518	34	DUF3721: Protein of unknown function; InterPro: IP	80.35

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=99.96  E-value=7.5e-28  Score=210.40  Aligned_cols=122  Identities=34%  Similarity=0.574  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHheeeeEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEE
Q 021403          185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRI  264 (313)
Q Consensus       185 ~~~l~ial~v~lllr~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRV  264 (313)
                      ++.++++++++++++.|++++++|+|+||+|||++||+|+++|..|...++++||+|+|+.|..       .++.+||||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~-------~~~~~iKRV   74 (163)
T TIGR02227         2 ILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDD-------NKNIYVKRV   74 (163)
T ss_pred             HHHHHHHHHHHHHHHhhEEEEEEECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCC-------CCceeEEEE
Confidence            4567778888899999999999999999999999999999999988778999999999998752       567899999


Q ss_pred             EEeCCCEEEEECCEEEECCEEcCccccccccc--------CCCCCEEecCCeEEEeC
Q 021403          265 VATAGDCVEVHGGKLLVNGVAQDEDFILEPLA--------YEMDPVVMFPILVLFLF  313 (313)
Q Consensus       265 IGlPGDtV~I~dg~vyVNGk~l~E~yi~~~~~--------~~~~~~tVPeGeyFVL~  313 (313)
                      +|+|||+|+++++.+||||+.++|+|+.+...        ....+++||+|+||||+
T Consensus        75 ig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlG  131 (163)
T TIGR02227        75 IGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLG  131 (163)
T ss_pred             EecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEEC
Confidence            99999999999999999999999988654311        22456799999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>PRK10861 signal peptidase I; Provisional

Probab=99.93  E-value=2.8e-25  Score=213.97  Aligned_cols=95  Identities=36%  Similarity=0.562  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHheeeeEEECCCCCccCCCCCCEEEEEeeeccC------------CCCCcCcEEEEecCCcccc
Q 021403          184 DAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFF------------KRPEVSDIVIFRAPPILQE  251 (313)
Q Consensus       184 ~~~~l~ial~v~lllr~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~------------~~p~rGDIVVF~~P~~~~~  251 (313)
                      ++..++++++++++++.|+++++.|+|+||+|||++||+|+++|+.|++            .+|+|||||+|+.|.+   
T Consensus        63 ~~~~~~~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~GD~IlVnK~~yg~~~p~~~~~~~~~~~p~RGDIVVF~~P~~---  139 (324)
T PRK10861         63 TGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKYPED---  139 (324)
T ss_pred             HHHHHHHHHhHHHHHHhhEEEEEEECCCcCcCcccCCCEEEEEEeecCccCccccccccccCCCCCCCEEEEecCCC---
Confidence            3466778888899999999999999999999999999999999999864            5799999999999863   


Q ss_pred             cCCCCCceeEEEEEEeCCCEEEEE--CCEEEECCEE
Q 021403          252 IGFSSGDVFIKRIVATAGDCVEVH--GGKLLVNGVA  285 (313)
Q Consensus       252 ~g~~~~~~~VKRVIGlPGDtV~I~--dg~vyVNGk~  285 (313)
                          +++.+||||||+|||+|+++  ++++||||+.
T Consensus       140 ----~~~~yIKRVIGlPGD~I~~~~~~~~l~iNg~~  171 (324)
T PRK10861        140 ----PKLDYIKRVVGLPGDKVTYDPVSKEVTIQPGC  171 (324)
T ss_pred             ----CCCcEEEEeeecCCcEEEEEeCCCEEEEcCcc
Confidence                56789999999999999998  8999999974

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.9e-20  Score=164.27  Aligned_cols=105  Identities=41%  Similarity=0.589  Sum_probs=89.1

Q ss_pred             HHHHHHHHHheeeeEEECCCCCccCCCC-CCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCC
Q 021403          192 LTVSFLFKSFLAEPRSIPSASMNPTLDV-GDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGD  270 (313)
Q Consensus       192 l~v~lllr~fv~~~~~I~g~SMePTL~~-GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGD  270 (313)
                      .+++++...|++++..++|.||+|||++ ||+++.+|++|.++++++||||+++.|..       +.+.+||||+|+|||
T Consensus        22 ~~f~h~t~~yl~e~~~~~gpSM~PTl~~~gd~l~aEkls~~f~~~~~gDIVi~~sP~~-------~~~~~cKRIva~eGD   94 (176)
T KOG0171|consen   22 AAFTHVTHEYLGEFVMCSGPSMEPTLHDGGDVLLAEKLSYRFRKPQVGDIVIAKSPPD-------PKEHICKRIVAMEGD   94 (176)
T ss_pred             HHHHHHHHHHhcceeeccCCCcCceecCCCcEEehhhhhHhhcCCCCCCEEEEeCCCC-------chhhhhheeeccCCc
Confidence            3444556679999999999999998887 56666699999999999999999999984       678899999999999


Q ss_pred             EEEEECCEEEECCEEcCcccccccccCCCCCEEecCCeEEEeC
Q 021403          271 CVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLFLF  313 (313)
Q Consensus       271 tV~I~dg~vyVNGk~l~E~yi~~~~~~~~~~~tVPeGeyFVL~  313 (313)
                      .|++.++.+.+|+..  |.+.        .+++||+|++||++
T Consensus        95 ~v~v~~~~~~~n~~~--e~~~--------~~i~VP~GhVfv~G  127 (176)
T KOG0171|consen   95 LVEVHDGPLVVNDLV--EKFS--------TPIRVPEGHVFVEG  127 (176)
T ss_pred             eEEEecCCcccchhh--hhcc--------ceeeccCceEEEec
Confidence            999999999888754  4332        66799999999974

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.66  E-value=1.3e-15  Score=135.69  Aligned_cols=102  Identities=19%  Similarity=0.191  Sum_probs=73.9

Q ss_pred             eeEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCccc-----ccCCC-------CCceeEEEEEEeCCCE
Q 021403          204 EPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ-----EIGFS-------SGDVFIKRIVATAGDC  271 (313)
Q Consensus       204 ~~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~-----~~g~~-------~~~~~VKRVIGlPGDt  271 (313)
                      .-++++-..-.|       +.++++.+..++++|||+|+|+.|+...     +++|-       ....+||||+|+|||+
T Consensus        27 ~~~~~N~T~S~p-------ig~y~~~~~~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~   99 (176)
T PRK13838         27 GGYRINLTPSEP-------LGLWRIEALDRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQR   99 (176)
T ss_pred             CceEEECCCCCE-------EEEEEEeccCCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcE
Confidence            335555444344       7888887666899999999999886421     12221       1246999999999999


Q ss_pred             EEEECCEEEECCEEcCcccccccccC-----CCCCEEecCCeEEEeC
Q 021403          272 VEVHGGKLLVNGVAQDEDFILEPLAY-----EMDPVVMFPILVLFLF  313 (313)
Q Consensus       272 V~I~dg~vyVNGk~l~E~yi~~~~~~-----~~~~~tVPeGeyFVL~  313 (313)
                      |++++ ++||||+.++|+|+.+....     ...+.+||+|+||||.
T Consensus       100 V~i~~-~v~iNg~~~~~~~~~~~~~~g~~l~~~~~~~vp~g~~fvlg  145 (176)
T PRK13838        100 VEIGG-SVSIDGRPLPSSSVRRRDGEGRPLTPFPGGVVPPGHLFLHS  145 (176)
T ss_pred             EEECC-EEEECCEEccccccccccccCCcCCCCCccCcCCCeEEEEC
Confidence            99984 89999999999887654321     1234589999999984

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.58  E-value=9.8e-15  Score=125.06  Aligned_cols=91  Identities=35%  Similarity=0.609  Sum_probs=79.9

Q ss_pred             hhHHHHHHHHHHHHHHH--HHheeeeEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCce
Q 021403          182 SDDAKAAFTALTVSFLF--KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDV  259 (313)
Q Consensus       182 ~~~~~~l~ial~v~lll--r~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~  259 (313)
                      .+++..++.++++++++  +.|+++++.|+|+||+|||+.||+|+++|..|....+..+|++  ..|.       .....
T Consensus         8 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~GD~v~v~k~~~~~~~~~~~~~~--~~~~-------~~~~~   78 (166)
T COG0681           8 LELISSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLNVGDRVLVKKFSYGFGKLKVPDII--VLPA-------VVEGD   78 (166)
T ss_pred             HHHHHHHHHHHHHhheeeeEEEEEEEEEECCCccccccccCCEEEEEeccccccCCccceee--ecCC-------CCCcc
Confidence            45667777788888888  8999999999999999999999999999999988889999988  3332       26788


Q ss_pred             eEEEEEEeCCCEEEEECCEEEE
Q 021403          260 FIKRIVATAGDCVEVHGGKLLV  281 (313)
Q Consensus       260 ~VKRVIGlPGDtV~I~dg~vyV  281 (313)
                      ++||+++++||.|.++++..++
T Consensus        79 ~~kr~~~~~GD~i~~~~~~~~~  100 (166)
T COG0681          79 LIKRVIGLRGDIVVFKDDRLYV  100 (166)
T ss_pred             eEEEeccCCCCEEEEECCEEEe
Confidence            9999999999999999999887

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=99.51  E-value=3.8e-13  Score=120.11  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=59.2

Q ss_pred             CCCCcCcEEEEecCCcc-----cccCCC------C-CceeEEEEEEeCCCEEEEECCEEEECCEEcCcccccc--cc---
Q 021403          233 KRPEVSDIVIFRAPPIL-----QEIGFS------S-GDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE--PL---  295 (313)
Q Consensus       233 ~~p~rGDIVVF~~P~~~-----~~~g~~------~-~~~~VKRVIGlPGDtV~I~dg~vyVNGk~l~E~yi~~--~~---  295 (313)
                      ..+++||+|+|+.|+..     .+++|-      . ...+||||+|+|||+|+++++.+||||+.+.+.....  ..   
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~~l~VNG~~v~~~~~~~~d~~g~~  128 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDDGVRVNGELLPLSKPILADGAGRP  128 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECCEEEECCEEccccccccccccCCc
Confidence            57999999999987632     123331      1 1479999999999999999999999999986543221  11   


Q ss_pred             --cCCCCCEEecCCeEEEeC
Q 021403          296 --AYEMDPVVMFPILVLFLF  313 (313)
Q Consensus       296 --~~~~~~~tVPeGeyFVL~  313 (313)
                        .+....++||+|+||||.
T Consensus       129 l~~~~~~~~~lp~g~~fvlg  148 (178)
T PRK13884        129 LPRYQANSYTLGESELLLMS  148 (178)
T ss_pred             ccccCCCceEECCCEEEEEC
Confidence              122234699999999984

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=99.51  E-value=3.5e-13  Score=119.66  Aligned_cols=104  Identities=23%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             HheeeeEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCccc-----ccCC-CCC------ceeEEEEEEe
Q 021403          200 SFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ-----EIGF-SSG------DVFIKRIVAT  267 (313)
Q Consensus       200 ~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~-----~~g~-~~~------~~~VKRVIGl  267 (313)
                      .|......-.++||-..+    +. +.+    .++++|||+|+|+.|+...     .+++ ..+      ..+||||+|+
T Consensus        21 ~~~~~~~~N~T~S~P~g~----Y~-~~~----~~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRVigl   91 (171)
T TIGR02771        21 LYCVGARINTTKSLPLGL----YW-TTS----SKPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGL   91 (171)
T ss_pred             cceeeEEEECCCCCcceE----EE-eCC----CCCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEe
Confidence            344333444566666543    22 222    2689999999999875321     1122 111      3799999999


Q ss_pred             CCCEEEEECCEEEECCEEcCccccccccc-----CCCCCEEecCCeEEEeC
Q 021403          268 AGDCVEVHGGKLLVNGVAQDEDFILEPLA-----YEMDPVVMFPILVLFLF  313 (313)
Q Consensus       268 PGDtV~I~dg~vyVNGk~l~E~yi~~~~~-----~~~~~~tVPeGeyFVL~  313 (313)
                      |||+|+++++.++|||+.+++.+......     ....+.+||+| ||+|.
T Consensus        92 pGD~V~i~~~~v~INg~~~~~~~~~~~~~~g~~l~~~~~~~vp~g-yf~lg  141 (171)
T TIGR02771        92 PGDRVTVRADVVAINGQLLPYSKPLATDSSGRPLPPFPEGVIPPG-FFVVH  141 (171)
T ss_pred             CCCEEEEECCEEEECCEEcccccccccccCCCccccCCCcEECCC-EEEEC
Confidence            99999999999999999988765432211     12346899999 88773

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=7.6e-14  Score=122.68  Aligned_cols=88  Identities=27%  Similarity=0.416  Sum_probs=71.8

Q ss_pred             HHHHHheeeeEEECCCCCccCCCCC------CEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC
Q 021403          196 FLFKSFLAEPRSIPSASMNPTLDVG------DRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG  269 (313)
Q Consensus       196 lllr~fv~~~~~I~g~SMePTL~~G------D~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG  269 (313)
                      +-+...+.....|.|.||+|||+++      |+|+++|+....+...|||||+|+.|.+       +++++||||+|+||
T Consensus        24 ~t~~DrV~~va~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~-------p~~~~iKRv~aleg   96 (174)
T KOG1568|consen   24 LTFSDRVVHVAQVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPND-------PDKVIIKRVAALEG   96 (174)
T ss_pred             eeeeeeEEEEeEEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCC-------hhheeeeeeecccc
Confidence            3445567788999999999999984      9999999976556789999999999984       88999999999999


Q ss_pred             CEEEE----------ECCEEEECCEEcCccc
Q 021403          270 DCVEV----------HGGKLLVNGVAQDEDF  290 (313)
Q Consensus       270 DtV~I----------~dg~vyVNGk~l~E~y  290 (313)
                      |.+.-          ..|++||.|....+.|
T Consensus        97 d~~~t~~~k~~~v~vpkghcWVegDn~~hs~  127 (174)
T KOG1568|consen   97 DIMVTEDEKEEPVVVPKGHCWVEGDNQKHSY  127 (174)
T ss_pred             cEeccCCCCCCceecCCCcEEEecCCccccc
Confidence            98865          2577777776554443

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.43  E-value=7.1e-13  Score=116.38  Aligned_cols=53  Identities=25%  Similarity=0.467  Sum_probs=46.2

Q ss_pred             ECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCC
Q 021403          208 IPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGD  270 (313)
Q Consensus       208 I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGD  270 (313)
                      |.|+||+|||++||.+++++..+  .++++||+|+|+.|.        ..+.++|||+++.++
T Consensus        36 V~g~SM~Ptl~~GD~vlv~~~~~--~~~~~GDIVvf~~~~--------~~~~iihRVi~v~~~   88 (158)
T TIGR02228        36 VLSGSMEPTFNTGDLILVTGADP--NDIQVGDVITYKSPG--------FNTPVTHRVIEINNS   88 (158)
T ss_pred             EcCCCCcCCccCCCEEEEEeccc--CCCCCCCEEEEEECC--------CCccEEEEEEEEECC
Confidence            99999999999999999998543  689999999999875        237899999999754

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.28  E-value=8.5e-13  Score=113.15  Aligned_cols=80  Identities=28%  Similarity=0.368  Sum_probs=9.9

Q ss_pred             CCCcCcEEEEecCCccc----ccCC-CCCceeEEEEEEeCCCEEEEECCEEEECCEEcCcccccccccC----CCCCEEe
Q 021403          234 RPEVSDIVIFRAPPILQ----EIGF-SSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAY----EMDPVVM  304 (313)
Q Consensus       234 ~p~rGDIVVF~~P~~~~----~~g~-~~~~~~VKRVIGlPGDtV~I~dg~vyVNGk~l~E~yi~~~~~~----~~~~~tV  304 (313)
                      .++|||+|+|+.|....    +++| ..+..++|||+|+|||+|+++++.++|||+++.+.+..+....    ...+.+|
T Consensus        21 ~~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~g~~l~~~~~~~~v  100 (138)
T PF10502_consen   21 KIERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSDGRPLPQFSGSGTV  100 (138)
T ss_dssp             --------------------------------------------------------------------S-T----TEEE-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceEe
Confidence            48999999999986322    3344 3456999999999999999999999999988887665433222    2246799


Q ss_pred             cCCeEEEeC
Q 021403          305 FPILVLFLF  313 (313)
Q Consensus       305 PeGeyFVL~  313 (313)
                      |+|+||||.
T Consensus       101 p~g~~~v~g  109 (138)
T PF10502_consen  101 PEGEYFVLG  109 (138)
T ss_dssp             -TTEEEEE-
T ss_pred             CCCEEEEec
Confidence            999999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.27  E-value=1.2e-11  Score=92.19  Aligned_cols=57  Identities=28%  Similarity=0.540  Sum_probs=47.1

Q ss_pred             EECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          207 SIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       207 ~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      +|.|+||+|+|++||+|++++.    ..++.||+|+|..+..        ...++||+++.+|+.+.+.
T Consensus         1 ~V~GdSM~P~i~~Gd~v~v~~~----~~~~~gdivv~~~~~~--------~~~~iKrv~~~~~~~~~~~   57 (70)
T PF00717_consen    1 RVEGDSMEPTIKDGDIVLVDPS----SEPKDGDIVVVKIDGD--------EELYIKRVVGEPGGIILIS   57 (70)
T ss_dssp             EEESSTTGGTSSTTEEEEEEET----S---TTSEEEEEETTE--------ESEEEEEEEEETTEEEEE-
T ss_pred             CeECcCcccCeeCCCEEEEEEc----CCCccCeEEEEEECCc--------eeeEEEEEEEeCCCEEEEe
Confidence            5899999999999999999987    4899999999998641        1389999999999999987

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.25  E-value=3.3e-11  Score=94.97  Aligned_cols=62  Identities=29%  Similarity=0.480  Sum_probs=50.8

Q ss_pred             EECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          207 SIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       207 ~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      .|.|+||+|||++||+|+++++......+++||+|+|+.|..       +++.++||+++++++.+.+.
T Consensus         2 ~V~g~SM~P~l~~GD~vlv~~~~~~~~~~~~Gdivv~~~~~~-------~~~~~vkRv~~~~~~~~~l~   63 (90)
T TIGR02754         2 KVTGVSMSPTLPPGDRIIVVPWLKIFRVPPIGNVVVVRHPLQ-------PYGLIIKRLAAVDDNGLFLL   63 (90)
T ss_pred             EeeCCCccCccCCCCEEEEEEccccCCCCCCCeEEEEecCCC-------CcceEEEEeeEEcCCeEEEe
Confidence            689999999999999999998654335567899999998752       46899999999987766554

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.09  E-value=4.9e-10  Score=86.95  Aligned_cols=55  Identities=42%  Similarity=0.810  Sum_probs=47.7

Q ss_pred             eEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEE
Q 021403          205 PRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA  266 (313)
Q Consensus       205 ~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIG  266 (313)
                      .+.|.|+||+||+++||++++++....+..+++||+|+|+.+..       .++.++|||++
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~v~~~~~~~~~~~~GDiv~~~~~~~-------~~~~~vkRv~~   56 (85)
T cd06530           2 PVVVPGGSMEPTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGD-------PGKPIIKRVIG   56 (85)
T ss_pred             eeEEcCCCCcCcccCCCEEEEEEeecccCCCCCCCEEEEeCCCC-------CCCEEEEEEEE
Confidence            57899999999999999999999864444799999999998751       35799999999

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=98.64  E-value=1.8e-07  Score=70.99  Aligned_cols=59  Identities=34%  Similarity=0.598  Sum_probs=49.5

Q ss_pred             eEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC-CEEEEE
Q 021403          205 PRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG-DCVEVH  275 (313)
Q Consensus       205 ~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG-DtV~I~  275 (313)
                      .+.+.|+||+|++++||.+++++..   ..++.||+|+++.+         .+..++||+...++ +++.+.
T Consensus         2 ~~~v~g~SM~P~i~~gd~v~i~~~~---~~~~~G~iv~~~~~---------~~~~~ikrl~~~~~~~~~~l~   61 (84)
T cd06462           2 ALRVEGDSMEPTIPDGDLVLVDKSS---YEPKRGDIVVFRLP---------GGELTVKRVIGLPGEGHYFLL   61 (84)
T ss_pred             eeEEcCCCccCcccCCCEEEEEecC---CCCcCCEEEEEEcC---------CCcEEEEEEEEECCCCEEEEE
Confidence            4689999999999999999999864   24899999999984         23799999999987 565554

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=98.59  E-value=2.2e-07  Score=70.68  Aligned_cols=57  Identities=28%  Similarity=0.488  Sum_probs=49.4

Q ss_pred             eEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          205 PRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       205 ~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      .++|.|+||+|++++||.+++++.    ..++.||++++..+          ++.++||+...+++.+.+.
T Consensus         2 ~~~v~g~sM~p~i~~gd~lii~~~----~~~~~g~i~~~~~~----------~~~~ikr~~~~~~~~~~L~   58 (81)
T cd06529           2 ALRVKGDSMEPTIPDGDLVLVDPS----DTPRDGDIVVARLD----------GELTVKRLQRRGGGRLRLI   58 (81)
T ss_pred             EEEEECCCcCCccCCCCEEEEcCC----CCCCCCCEEEEEEC----------CEEEEEEEEECCCCcEEEE
Confidence            368999999999999999999986    35999999999973          4789999999997766665

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.31  E-value=3.5e-06  Score=74.14  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             CCCCcCcEEEEecCCcc----cccCC-CCCceeEEEEEEeCCCEEEEECCEEEECCEEcCcccccccccCC----CCCEE
Q 021403          233 KRPEVSDIVIFRAPPIL----QEIGF-SSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYE----MDPVV  303 (313)
Q Consensus       233 ~~p~rGDIVVF~~P~~~----~~~g~-~~~~~~VKRVIGlPGDtV~I~dg~vyVNGk~l~E~yi~~~~~~~----~~~~t  303 (313)
                      ..+.+||+|+++.|+..    ..+|| .....++|||.|+|||+|++.++.+-|||+.+......+.....    .+.-.
T Consensus        52 ~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D~~GR~lp~~~gcR~  131 (173)
T COG4959          52 APVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVDRVGRALPRWQGCRY  131 (173)
T ss_pred             CCcccCCEEEECCCchHhHhHhhcCccccccHHHHHHhcCCCCcEEEecceEEECCEEeeeeccccccCCcCCcccCCce
Confidence            34599999999999742    24677 45678899999999999999999999999987654433332222    22235


Q ss_pred             ecCCeEEEe
Q 021403          304 MFPILVLFL  312 (313)
Q Consensus       304 VPeGeyFVL  312 (313)
                      +-++|+|+|
T Consensus       132 l~~~el~lL  140 (173)
T COG4959         132 LAPSELLLL  140 (173)
T ss_pred             ecCCeEEEE
Confidence            788888887

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.24  E-value=2.4e-06  Score=77.54  Aligned_cols=59  Identities=20%  Similarity=0.385  Sum_probs=49.5

Q ss_pred             eeEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          204 EPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       204 ~~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ....|.|+||+|++++||.++|+.-    .+..+||.|++..-         .++.+|||+...+|-.+.+.
T Consensus       124 ~~i~V~GDSMeP~~~~Gd~ilVd~~----~~~~~gd~v~v~~~---------g~~~~VK~l~~~~~~~~~l~  182 (214)
T COG2932         124 FALRVTGDSMEPTYEDGDTLLVDPG----VNTRRGDRVYVETD---------GGELYVKKLQREPGGLLRLV  182 (214)
T ss_pred             EEEEEeCCcccccccCCCEEEECCC----CceeeCCEEEEEEe---------CCeEEEEEEEEecCCeEEEE
Confidence            3479999999999999999999976    47788997777652         46899999999998888554

>PRK00215 LexA repressor; Validated

Probab=97.69  E-value=0.00013  Score=65.43  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             eeEEECCCCCc-cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          204 EPRSIPSASMN-PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       204 ~~~~I~g~SMe-PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ..++|.|+||. |++.+||+|++++.    ..++.||+|++..          +++.++||+.-. ++.+.+.
T Consensus       119 ~~~~V~GdSM~~~~i~~Gd~v~v~~~----~~~~~G~ivv~~~----------~~~~~vKrl~~~-~~~~~L~  176 (205)
T PRK00215        119 FLLRVRGDSMIDAGILDGDLVIVRKQ----QTARNGQIVVALI----------DDEATVKRFRRE-GGHIRLE  176 (205)
T ss_pred             EEEEEccCCCCCCCcCCCCEEEEeCC----CCCCCCCEEEEEE----------CCEEEEEEEEEe-CCEEEEE
Confidence            45889999995 79999999999975    4678999999986          347899999865 4444443

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.00018  Score=63.42  Aligned_cols=53  Identities=23%  Similarity=0.347  Sum_probs=42.9

Q ss_pred             eEEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEe
Q 021403          205 PRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT  267 (313)
Q Consensus       205 ~~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGl  267 (313)
                      .+.|-++||||.++.||.++.....  ....+.||||+|+.+.        .+-.+|+||+-+
T Consensus        50 iVVVLSgSMePaF~RGDlLfL~N~~--~~p~~vGdivVf~veg--------R~IPiVHRviK~  102 (180)
T KOG3342|consen   50 IVVVLSGSMEPAFHRGDLLFLTNRN--EDPIRVGDIVVFKVEG--------REIPIVHRVIKQ  102 (180)
T ss_pred             EEEEEcCCcCcccccccEEEEecCC--CCcceeccEEEEEECC--------ccCchhHHHHHH
Confidence            5788899999999999999987543  2356889999999875        456789998854

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=97.57  E-value=0.0003  Score=60.12  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             eeEEECCCCCc-cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEe
Q 021403          204 EPRSIPSASMN-PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVAT  267 (313)
Q Consensus       204 ~~~~I~g~SMe-PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGl  267 (313)
                      ...+|.|+||. |++++||++++++-    .+++.||+|++..          +++..+||+.-.
T Consensus        52 f~l~V~GdSM~~~~I~~GD~liVd~~----~~~~~Gdivv~~~----------~g~~~vKrl~~~  102 (139)
T PRK10276         52 YFVKASGDSMIDAGISDGDLLIVDSA----ITASHGDIVIAAV----------DGEFTVKKLQLR  102 (139)
T ss_pred             EEEEEecCCCCCCCCCCCCEEEEECC----CCCCCCCEEEEEE----------CCEEEEEEEEEC
Confidence            34899999998 68999999999975    3678999999875          456889999853

>PRK12423 LexA repressor; Provisional

Probab=97.56  E-value=0.00025  Score=64.21  Aligned_cols=56  Identities=25%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             eEEECCCCCc-cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          205 PRSIPSASMN-PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       205 ~~~I~g~SMe-PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ..+|.|+||. |+|.+||.|++++.    .+++.||+|++..          +++.++||+.-. ++.+.+.
T Consensus       116 ~l~V~GdSM~~~~i~~Gd~viv~~~----~~~~~Gdivv~~~----------~~~~~vKrl~~~-~~~~~L~  172 (202)
T PRK12423        116 LLQVQGDSMIDDGILDGDLVGVHRS----PEARDGQIVVARL----------DGEVTIKRLERS-GDRIRLL  172 (202)
T ss_pred             EEEEecCcCCCCCcCCCCEEEEeCC----CcCCCCCEEEEEE----------CCEEEEEEEEEe-CCEEEEE
Confidence            4799999997 79999999999975    4788999999986          357899999855 4555554

>TIGR00498 lexA SOS regulatory protein LexA

Probab=97.50  E-value=0.00038  Score=62.23  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=46.2

Q ss_pred             eeeEEECCCCCc-cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          203 AEPRSIPSASMN-PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       203 ~~~~~I~g~SMe-PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ...++|.|+||. |++.+||++++++.    ..++.||+|++..          +++.++||+.-. |+.+.+.
T Consensus       111 ~f~~~V~GdSM~~~~i~~Gd~v~v~~~----~~~~~G~ivvv~~----------~~~~~vKrl~~~-~~~i~L~  169 (199)
T TIGR00498       111 VFLLKVMGDSMVDAGICDGDLLIVRSQ----KDARNGEIVAAMI----------DGEVTVKRFYKD-GTKVELK  169 (199)
T ss_pred             EEEEEecCCCCCCCCCCCCCEEEEecC----CCCCCCCEEEEEE----------CCEEEEEEEEEE-CCEEEEE
Confidence            355899999996 68999999999975    4789999999986          457899998754 4444443

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=94.40  E-value=0.18  Score=46.34  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=45.5

Q ss_pred             eeEEECCCCCcc-CCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          204 EPRSIPSASMNP-TLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       204 ~~~~I~g~SMeP-TL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ...+|.|+||.. .+.+||.|+|++-    ...+.||||+...+         +++..+||..- .|+.|...
T Consensus       113 f~L~V~GdSM~~~gi~dGDlvvV~~~----~~a~~GdiVvA~i~---------g~e~TvKrl~~-~g~~i~L~  171 (201)
T COG1974         113 FFLRVSGDSMIDAGILDGDLVVVDPT----EDAENGDIVVALID---------GEEATVKRLYR-DGNQILLK  171 (201)
T ss_pred             EEEEecCCccccCcCCCCCEEEEcCC----CCCCCCCEEEEEcC---------CCcEEEEEEEE-eCCEEEEE
Confidence            347999999965 7888999999976    58899999999974         35588999874 45555543

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=92.17  E-value=0.2  Score=42.58  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=24.2

Q ss_pred             CceeEEEEEEeCCCEEEEECCEEEECCEE
Q 021403          257 GDVFIKRIVATAGDCVEVHGGKLLVNGVA  285 (313)
Q Consensus       257 ~~~~VKRVIGlPGDtV~I~dg~vyVNGk~  285 (313)
                      ...++||++++|||.+...+..+++||++
T Consensus       137 ~~~~~~~~~~~~gd~~~~~~~~~~~~g~~  165 (166)
T COG0681         137 KKDYIKRVIGLPGDNILYTDDDLPINGKP  165 (166)
T ss_pred             ccccccceEEeeccceeeccCceeecCCC
Confidence            46789999999999999986558888864

>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length

Probab=80.35  E-value=0.73  Score=31.05  Aligned_cols=9  Identities=56%  Similarity=1.782  Sum_probs=7.9

Q ss_pred             cCccccCCC
Q 021403          125 GSKWLPCNE  133 (313)
Q Consensus       125 ~~~w~~c~~  133 (313)
                      ++||+||++
T Consensus        23 g~~WMPC~~   31 (34)
T PF12518_consen   23 GDKWMPCSN   31 (34)
T ss_pred             cCccccCcc
Confidence            689999985

There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	313
1kn9_A	249	Crystal Structure Of A Bacterial Signal Peptidase A		1e-06
1t7d_A	250	Crystal Structure Of Escherichia Coli Type I Signal		1e-06
1b12_A	248	Crystal Structure Of Type 1 Signal Peptidase From E		2e-06

>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo- Enzyme, Implications For Signal Peptide Binding And The Ser-Lys Dyad Mechanism. Length = 249

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 23/90 (25%)
Query: 197 LFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFR 244
           + +SF+ EP  IPS SM PTL +GD IL EK +Y  K             P+  DIV+F+
Sbjct: 1   MVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFK 60
Query: 245 AP--PILQEIGFSSGDVFIKRIVATAGDCV 272
            P  P L          +IKR V   GD V
Sbjct: 61  YPEDPKLD---------YIKRAVGLPGDKV 81

>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal Peptidase In Complex With A Lipopeptide Inhibitor Length = 250

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 23/91 (25%)
Query: 196 FLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIF 243
            + +SF+ EP  IPS SM PTL +GD IL EK +Y  K             P+  DIV+F
Sbjct: 1   MIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVF 60
Query: 244 RAP--PILQEIGFSSGDVFIKRIVATAGDCV 272
           + P  P L          +IKR V   GD V
Sbjct: 61  KYPEDPKLD---------YIKRAVGLPGDKV 82

>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From Escherichia Coli In Complex With A Beta-Lactam Inhibitor Length = 248

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 23/88 (26%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFRAP 246
           +SF+ EP  IPS SM PTL +GD IL EK +Y  K             P+  DIV+F+ P
Sbjct: 2   RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYP 61
Query: 247 --PILQEIGFSSGDVFIKRIVATAGDCV 272
             P L          +IKR V   GD V
Sbjct: 62  EDPKLD---------YIKRAVGLPGDKV 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 19/103 (18%)

Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSY------------FFKRPEVSDIVIFRAP 246
           +SF+ EP  IPS SM PTL +GD IL EK +Y                P+  DIV+F+ P
Sbjct: 2   RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYP 61

Query: 247 PILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDED 289
                        +IKR V   GD V        +        
Sbjct: 62  E-------DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSS 97

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 21/151 (13%), Positives = 44/151 (29%), Gaps = 50/151 (33%)

Query: 196 FLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPE-VSDIVIFRAPPILQEIGF 254
            LF + L++   +    +   L +  + L   +    ++P  ++ + I +   +     +
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-----Y 120

Query: 255 SSGDVFIKRIV---------------ATAGDCVEVHG----GK-LLVNGVAQDEDF---- 290
           +   VF K  V                     V + G    GK  +   V          
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 291 --------------------ILEPLAYEMDP 301
                               +L+ L Y++DP
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	99.9
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	98.56
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	98.51
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	98.4
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	98.33
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	97.96
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	97.92
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	90.28

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=99.90  E-value=7.6e-24  Score=194.48  Aligned_cols=79  Identities=42%  Similarity=0.578  Sum_probs=72.1

Q ss_pred             HHHheeeeEEECCCCCccCCCCCCEEEEEeeeccC------------CCCCcCcEEEEecCCcccccCCCCCceeEEEEE
Q 021403          198 FKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFF------------KRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV  265 (313)
Q Consensus       198 lr~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~------------~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVI  265 (313)
                      ++.|+++++.|+|+||+|||++||+|+++|..|++            ++++|||||+|+.|..       ++..+||||+
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi   73 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV   73 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred             CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence            46799999999999999999999999999998753            6899999999998852       5678999999


Q ss_pred             EeCCCEEEEECC--EEEECC
Q 021403          266 ATAGDCVEVHGG--KLLVNG  283 (313)
Q Consensus       266 GlPGDtV~I~dg--~vyVNG  283 (313)
                      |+|||+|+++++  .|||||
T Consensus        74 glpGD~v~i~~~~~~l~ING   93 (248)
T 1b12_A           74 GLPGDKVTYDPVSKELTIQP   93 (248)
T ss_dssp             ECTTCEEEEETTTTEEEEET
T ss_pred             eeCCCEEEEEcCceEEEECC
Confidence            999999999999  999999

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=98.56  E-value=1.2e-07  Score=76.60  Aligned_cols=51  Identities=20%  Similarity=0.251  Sum_probs=44.5

Q ss_pred             eeEEECCCCCcc-CCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeC
Q 021403          204 EPRSIPSASMNP-TLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATA  268 (313)
Q Consensus       204 ~~~~I~g~SMeP-TL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlP  268 (313)
                      ..++|.|+||+| ||++||.|++++.    .+++.||+|++..          +++.+|||++..+
T Consensus        28 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~gdivv~~~----------~~~~~vKr~~~~~   79 (116)
T 1umu_A           28 YFVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAV----------DGEFTVKKLQLRP   79 (116)
T ss_dssp             EEEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEE----------TTEEEEEEEECSS
T ss_pred             EEEEECCCCcCCCCCCCCCEEEEEcC----CCCCCCCEEEEEE----------CCEEEEEEEEeCC
Confidence            458999999999 8999999999986    4689999999987          3478999999865

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=98.51  E-value=3e-07  Score=74.14  Aligned_cols=52  Identities=23%  Similarity=0.332  Sum_probs=44.6

Q ss_pred             eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC
Q 021403          205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG  269 (313)
Q Consensus       205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG  269 (313)
                      .++|.|+||+      |+|++||+|++++.    .+++.||+|++..+         .++.+|||++..+|
T Consensus        15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~   72 (109)
T 1kca_A           15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRDSG   72 (109)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECS---------TTCEEEEEEEEETT
T ss_pred             EEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEEC---------CCeEEEEEEEEeCC
Confidence            5789999999      99999999999986    46999999999873         24789999998644

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=98.40  E-value=6.7e-07  Score=78.16  Aligned_cols=57  Identities=23%  Similarity=0.302  Sum_probs=49.1

Q ss_pred             eeEEECCCCCccC-CCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          204 EPRSIPSASMNPT-LDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       204 ~~~~I~g~SMePT-L~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      ..++|.|+||+|+ |.+||.|++++.    .+++.||+|++..          +++.+|||+. .+|+.+.+.
T Consensus       111 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l~  168 (202)
T 1jhf_A          111 FLLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVELL  168 (202)
T ss_dssp             EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEEE
T ss_pred             EEEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEEE
Confidence            3588999999999 999999999876    4689999999986          3578999999 688877775

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=98.33  E-value=1.3e-06  Score=72.28  Aligned_cols=52  Identities=19%  Similarity=0.261  Sum_probs=44.3

Q ss_pred             eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC
Q 021403          205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG  269 (313)
Q Consensus       205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG  269 (313)
                      .++|.|+||+      |+|++||+|++++.    .+++.||+|+++..         .++.+|||++-.+|
T Consensus        46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~  103 (133)
T 2hnf_A           46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRDSG  103 (133)
T ss_dssp             EEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEETT
T ss_pred             EEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEeCC
Confidence            5789999999      99999999999985    47899999999863         24789999996543

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=97.96  E-value=2.4e-05  Score=68.39  Aligned_cols=51  Identities=20%  Similarity=0.253  Sum_probs=43.5

Q ss_pred             eeEEECCCCC-ccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeC
Q 021403          204 EPRSIPSASM-NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATA  268 (313)
Q Consensus       204 ~~~~I~g~SM-ePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlP  268 (313)
                      ..++|.|+|| +|++.+||+|++++.    ..++.||+|++..          +++.+|||+.-.+
T Consensus       110 f~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~----------~~~~~vKr~~~~~  161 (196)
T 3k2z_A          110 FLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMV----------DGEVTLAKFYQRG  161 (196)
T ss_dssp             EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEE----------TTEEEEEEEEEET
T ss_pred             EEEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEE----------CCcEEEEEEEEEC
Confidence            4589999999 699999999999986    4789999999986          3579999997543

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=97.92  E-value=1.3e-05  Score=70.87  Aligned_cols=55  Identities=22%  Similarity=0.313  Sum_probs=45.9

Q ss_pred             eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEE
Q 021403          205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCV  272 (313)
Q Consensus       205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV  272 (313)
                      .++|.|+||+      |+|.+||+|+|++.    .+++.||+|++...         .++.+|||+.-.+|..+
T Consensus       142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~----~~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~~~  202 (236)
T 3bdn_A          142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRGSGQVF  202 (236)
T ss_dssp             EEECCSSSSCCCSSCSSCCCSSCEEEECCS----SCCCTTSEEEEEST---------TTCCCCEEEECCSSSCE
T ss_pred             EEEEeCCCcCCCCCCCCcCCCCCEEEECCC----CCCCCCcEEEEEEC---------CCeEEEEEEEEcCCcEE
Confidence            4789999999      99999999999875    37899999999862         35789999997665544

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=90.28  E-value=0.41  Score=40.31  Aligned_cols=43  Identities=14%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             CCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021403          218 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH  275 (313)
Q Consensus       218 ~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~  275 (313)
                      .+||.|+|++.     .+..|+++++..          +++.+|||+.-.+|+.+.+.
T Consensus       120 ~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~  162 (189)
T 2fjr_A          120 SEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA  162 (189)
T ss_dssp             ETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred             eCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence            89999999874     266799999986          45799999998888877665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	6e-18

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 79.6 bits (195), Expect = 6e-18
 Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 200 SFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSS--- 256
           SF+ EP  IPS SM PTL +GD IL EK +Y  K P     +I    P   +I       
Sbjct: 2   SFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE 61

Query: 257 --GDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFP 306
                +IKR V   GD V        +              A  +    + P
Sbjct: 62  DPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEP 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	99.85
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	98.14
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	98.13
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	97.7

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.4e-22  Score=177.76  Aligned_cols=77  Identities=43%  Similarity=0.574  Sum_probs=67.4

Q ss_pred             HHheeeeEEECCCCCccCCCCCCEEEEEeeeccCC------------CCCcCcEEEEecCCcccccCCCCCceeEEEEEE
Q 021403          199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------RPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA  266 (313)
Q Consensus       199 r~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~~------------~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIG  266 (313)
                      |.|+++++.|||+||+|||+.||+|+|+|++|+++            .+++||+|+|+.|..       ....+||||+|
T Consensus         1 R~f~~~~f~IPs~SMePTL~~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~-------~~~~~ikR~ig   73 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAVG   73 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEEE
T ss_pred             CEEEEEEEEeCcccccchhccCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCC-------CCccccccccC
Confidence            46899999999999999999999999999998765            459999999999873       66789999999


Q ss_pred             eCCCEEEEECCEEEEC
Q 021403          267 TAGDCVEVHGGKLLVN  282 (313)
Q Consensus       267 lPGDtV~I~dg~vyVN  282 (313)
                      +|||+|++.+...++|
T Consensus        74 ~pGD~i~~~~~~~~i~   89 (247)
T d1b12a_          74 LPGDKVTYDPVSKELT   89 (247)
T ss_dssp             CTTCEEEEETTTTEEE
T ss_pred             CCCCeEEEecccceEE
Confidence            9999999985544443

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=3.3e-06  Score=67.70  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             eEEECCCCCccC-CCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEE
Q 021403          205 PRSIPSASMNPT-LDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEV  274 (313)
Q Consensus       205 ~~~I~g~SMePT-L~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I  274 (313)
                      ..+|.|+||+|+ +++||++++++.    .+++.||+|++..          +++.++||+.-.+ +.+..
T Consensus        40 ~lrV~GdSM~~~~i~~gd~viv~~~----~~~~~G~ivv~~~----------~ge~~vKrl~~~~-~~~~L   95 (126)
T d1jhfa2          40 LLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLKKQG-NKVEL   95 (126)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEEEET-TEEEE
T ss_pred             EEEEcCCcccCcccCCCEEEEEecc----ccccCCCEEEEEE----------CCEEEEEEEEEcC-CEEEE
Confidence            479999999998 999999999986    5899999999997          4679999998653 34444

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=98.13  E-value=3.9e-06  Score=64.99  Aligned_cols=53  Identities=23%  Similarity=0.333  Sum_probs=43.7

Q ss_pred             eEEECCCCC------ccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCC
Q 021403          205 PRSIPSASM------NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGD  270 (313)
Q Consensus       205 ~~~I~g~SM------ePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGD  270 (313)
                      ..+|.|+||      +|+|++||+|++++.    .+++.||+|++...         .++.++||+.-.+|.
T Consensus         7 ~l~V~GdSM~~~~~~ep~i~~Gd~viVd~~----~~~~~g~ivva~~~---------~~~~~vKr~~~~~~~   65 (101)
T d1f39a_           7 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRDSGQ   65 (101)
T ss_dssp             EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECT---------TSCEEEEEEEEETTE
T ss_pred             EEEEeCCccCCCcccCCCcCCCCEEEEEec----CccCCCCEEEEEEC---------CCeEEEEEEEEcCCE
Confidence            478999999      899999999999975    58999999988763         356789999865443

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.8e-05  Score=60.79  Aligned_cols=47  Identities=21%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             eEEECCCCC-ccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEE
Q 021403          205 PRSIPSASM-NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV  265 (313)
Q Consensus       205 ~~~I~g~SM-ePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVI  265 (313)
                      ..+|.|+|| .|.+.+||.+++++.    .+++.||+|++..          +++.++||..
T Consensus        22 ~~rV~GdSM~~~gI~~GDlliVd~~----~~~~~g~ivva~i----------~ge~~vKrl~   69 (105)
T d1umua_          22 FVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAV----------DGEFTVKKLQ   69 (105)
T ss_dssp             EEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEE----------TTEEEEEEEE
T ss_pred             EEEEcCCccccCccCCCCEEEEEcc----cccccCcEEEEEE----------CCEEEEEEEE
Confidence            589999999 588999999999986    5789999999997          5679999975