Citrus Sinensis ID: 021467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEASIFSFC
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEccccccccccccEEEEEEccccccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHEEEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccccccEEEHHHEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHccHHcccccccccccccccccccEEEEEEEcccccccccccEEEEEHHHcccccccEEEcHHHHHHHHHHcccEEEEEccHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
msvlpiprselthhRLYEFAKTALIKiyshpyvtvcdlycgagvdvdKWETALIANYIgidvatsgigearDTWENQRKNFIAEffeadpcaenFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSllkpggyflgitpdsSTIWAKYQKNVEAyhnrsssmkpnlvpncirsesyvITFEveeekfplfgkKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMsagpnlidprgrllprsydvlGLYStfifqkpdpdvapplatpllqdneasifsfc
Flexible Loop (DISEMBL)
msvlpiprseltHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHnrsssmkpnlvpncIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLAtpllqdneASIFSFC
Low Complexity Region (SEG)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEASIFSFC
Disordered region (IsUnstruct)
**********LTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN*******NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK*************************
Disordered Region (DISOPRED)
***********THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF*********************SYDVLGLYSTFIFQKP******************SIFSFC
Disordered Region (DISEMBL)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEASIFSFC
Disordered Region (DISPRO)
**VLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVE******SSMKP*LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEASIFSFC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNEASIFSFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q5HZ60	354	mRNA cap guanine-N7 methy	yes	no	0.955	0.841	0.696	1e-128
Q6K833	339	mRNA cap guanine-N7 methy	yes	no	0.926	0.852	0.692	1e-122
Q6Z9U7	369	mRNA cap guanine-N7 methy	no	no	0.814	0.688	0.309	3e-23
Q9VJQ4	427	mRNA cap guanine-N7 methy	yes	no	0.644	0.470	0.290	1e-21
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.762	0.595	0.251	4e-20
Q9LHQ7	370	mRNA cap guanine-N7 methy	no	no	0.676	0.570	0.316	8e-20
Q9I8S2	402	mRNA cap guanine-N7 methy	N/A	no	0.634	0.492	0.271	9e-18
Q28FT4	405	mRNA cap guanine-N7 methy	yes	no	0.631	0.486	0.268	3e-17
P32783	436	mRNA cap guanine-N7 methy	yes	no	0.692	0.495	0.311	5e-17
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.785	0.575	0.311	7e-17

>sp|Q5HZ60|MCES2_ARATH mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1

 Score =  458 bits (1178), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 209/300 (69%), Positives = 253/300 (84%), Gaps = 2/300 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 239 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 298

mRNA capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6K833|MCES2_ORYSJ mRNA cap guanine-N7 methyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os02g0780600 PE=2 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/293 (69%), Positives = 235/293 (80%), Gaps = 4/293 (1%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HHRLYEFAKTALIKI++ PY TVCDLYC  GVD DKW  A I +YIGID + SG+ +AR+
Sbjct: 6   HHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGVNDARE 65

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
            WE+++K F +EF E DP A++FE QMQEK  QAD+VCC QHLQ+CFE+EE A++LL NV
Sbjct: 66  LWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQKLLNNV 125

Query: 133 SSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE 192
           SSLLKPGGYF+GI PDSSTIW KYQKNVEA HN+        VPN IRSE+YVITFEVEE
Sbjct: 126 SSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKT----VPNSIRSENYVITFEVEE 181

Query: 193 EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFA 252
           EKFP FGKKYQLKFAN+   E  CLVHFPS +RLAREAGLEYVEIQNL EFYDDNR  FA
Sbjct: 182 EKFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNRTQFA 241

Query: 253 GMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQDNE 305
            +L   G +L+DPRG+L+ RS+D+LGLYSTF+FQKPDPD  PP+ TP L D E
Sbjct: 242 PLLGGYGSSLVDPRGKLVARSFDILGLYSTFVFQKPDPDAMPPIVTPELHDPE 294

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 37/291 (12%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR--- 71
           +L  + K+ LI++Y+HP   V DL CG G D+ KW+ A +  Y+G+D+A   I +     
Sbjct: 68  KLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSIKDCMTRY 127

Query: 72  --DTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---DLVCCFQHLQMCFETEERAR 126
             DT + +RK F   F     CA+ +E ++ E   +    D+  C   L   + TE RAR
Sbjct: 128 NGDTDQQRRKKF--SFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWSTEARAR 185

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           + L NVS+LL+PGG F+G  PD++ I  + ++        +  M+         +  Y I
Sbjct: 186 QALANVSALLRPGGVFIGTMPDANVIIKRLRE--------TDGME-------FGNGVYWI 230

Query: 187 TF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241
           +F  E  E+KFP    FG KY+    + +    + +V F     LA E  LE V  +N +
Sbjct: 231 SFGEEYAEKKFPASRPFGIKYKFHLEDAVDC-PEWVVPFHLFKLLAEEYDLELVLTKNFH 289

Query: 242 EFYDD--NRALFAGMLMSAGPNLIDPR---GRLLPRSYDVLGLYSTFIFQK 287
           EF  +   +  FA ++   G  L D R     L    ++V  LY  F+ +K
Sbjct: 290 EFVHEYLQKPEFAELMRRLGA-LGDGRQDQSTLSQDEWEVAYLYLAFVLRK 339

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9VJQ4|MCES_DROME mRNA cap guanine-N7 methyltransferase OS=Drosophila melanogaster GN=l(2)35Bd PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 23/224 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QR-------KNFIA 83
           + V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F A
Sbjct: 137 LRVLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTA 196

Query: 84  EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           EFF  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+
Sbjct: 197 EFFACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFI 256

Query: 144 GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQ 203
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ
Sbjct: 257 ATMPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQ 303

Query: 204 LKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct: 304 FHLEGVVDC-PEFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 56/294 (19%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-------NFIAEF 85
           VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct: 122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct: 182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query: 146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
           TPD+  +  + +++                 N   +E + +TF+ + E +PLFG +Y   
Sbjct: 242 TPDAYELVKRLEES---------------DSNSFGNEVFSVTFQKKGE-YPLFGCQYDFS 285

Query: 206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD------NRALFA------- 252
               ++   + LV+FP  + +A++  +  V  +   EF+++      N+ L         
Sbjct: 286 LEGVVNV-PEFLVYFPLFVEMAKKYNMRLVYKKTFKEFFEEKVKDGKNKDLMQWMQALEQ 344

Query: 253 ------GMLMSAGPNLID-------------PRGRLLPRSYDVLGLYSTFIFQK 287
                 G L S+GP   D             P G L    ++   +Y  ++F+K
Sbjct: 345 YPPDERGQLSSSGPGEYDHAKRKAADPAVRRPLGTLSKSEWEATSIYLVYVFEK 398

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/243 (31%), Positives = 114/243 (46%), Gaps = 32/243 (13%)

Query: 15  RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I + R  +
Sbjct: 68  KLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSIEDCRTRY 127

Query: 75  ------ENQRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERA 125
                   +RK F   F     C + FE ++    E+    D+  C   +   + TE RA
Sbjct: 128 NGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWTTEARA 185

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           RR L NVS+LL+PGG F+G  PD++ I  K  +  E                 I +  Y 
Sbjct: 186 RRALANVSALLRPGGVFIGTMPDANVIIKKL-REAEGLE--------------IGNSVYW 230

Query: 186 ITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE V ++N 
Sbjct: 231 IRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDC-PEWIVPFNVFKSLAEEYDLELVFVKNS 289

Query: 241 NEF 243
           +EF
Sbjct: 290 HEF 292

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q9I8S2|MCES_XENLA mRNA cap guanine-N7 methyltransferase OS=Xenopus laevis GN=rnmt PE=2 SV=1

 Score = 91.3 bits (225), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 23/221 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW    I+  +  D+A   + +    +++ ++       F AEF 
Sbjct: 125 ITVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEQRYKDMKRKSRNERIFEAEFL 184

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            +D   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 185 TSDSTKELLSEKYIDPEIKFDICSCQFVYHYSFETYEQADTMLRNACERLCPGGFFIGTT 244

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y +TFE ++ K+PLFG KY    
Sbjct: 245 PDGFELV----KRLEASDT-----------NSFGNDVYTVTFE-KKGKYPLFGCKYDFSL 288

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
              ++   + LV+FP L+ +A++  ++ +  +   EF+++ 
Sbjct: 289 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEEK 328

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q28FT4|MCES_XENTR mRNA cap guanine-N7 methyltransferase OS=Xenopus tropicalis GN=rnmt PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 23/220 (10%)

Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           + V DL CG G D+ KW    I+  +  D+A   + +  + +++ ++       F AEF 
Sbjct: 128 IAVLDLGCGKGGDLLKWRKGGISKLVCTDIADVSVKQCEERYKDLKRKSRNERVFEAEFL 187

Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    +  +   + D+  C       FET E+A  +L+N    L PGG+F+G T
Sbjct: 188 TADSTKELLSEKYNDPEIKFDICSCQFVYHYSFETYEQADMMLRNACERLCPGGFFIGTT 247

Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           PD   +     K +EA              N   ++ Y + FE ++ K+PLFG KY    
Sbjct: 248 PDGFELV----KRLEASDT-----------NSFGNDVYTVKFE-KKGKYPLFGCKYDFSL 291

Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              ++   + LV+FP L+ +A++  ++ +  +   EF+++
Sbjct: 292 EEVVNV-PEFLVYFPVLVEMAKKYQMKLIYKKTFREFFEE 330

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P32783|MCES_YEAST mRNA cap guanine-N7 methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ABD1 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 104/231 (45%), Gaps = 15/231 (6%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct: 154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query: 80  NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
           ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct: 214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query: 137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
           K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct: 274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFT------ 327

Query: 194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct: 328 --SPYGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

Responsible for methylating the 5'-cap structure of mRNAs.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 129/292 (44%), Gaps = 47/292 (16%)

Query: 21  KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
           K  LI  ++     V +L CG G D+ K+  A I+ +IGID++ + I EA   + + +  
Sbjct: 151 KYILIDKFTRAGDVVLELACGKGGDLRKYGAAGISQFIGIDISNASITEALKRYHSMKNL 210

Query: 80  NFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
            +       D   E+    ++   E     D+V C   L   FETEE+ARR+L NV   L
Sbjct: 211 EYQVILITGDCFGESLGVAVESFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSL 270

Query: 137 KPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---- 192
           K GGYF G  PDS  I  K  K  E      S  KP+   N I    Y +TF   E    
Sbjct: 271 KIGGYFFGTIPDSEFIRYKMNKIPE------SVEKPSW-GNSI----YKVTFSNNEYQKN 319

Query: 193 -EKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRAL 250
             +FP  FG+ Y     + I    + ++ F S   LA E G+E    +  NEF+      
Sbjct: 320 GNEFPSPFGQMYTFWLEDAIDNVPEYVIPFESFRSLADEYGMELELQKGFNEFF------ 373

Query: 251 FAGMLMSAGPNLID---PRGRL-LPRS---YDVLGL--------YSTFIFQK 287
                +   PN ++   P+ R  L RS   Y V G+        Y+TF F+K
Sbjct: 374 -----VEEIPNWVNRFSPKMREGLKRSDGRYGVEGVEKEPAAYFYTTFAFRK 420

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
224109904	287	predicted protein [Populus trichocarpa]	0.919	1.0	0.815	1e-143
449449401	354	PREDICTED: mRNA cap guanine-N7 methyltra	0.964	0.850	0.767	1e-140
296090379	319	unnamed protein product [Vitis vinifera]	0.964	0.943	0.745	1e-137
225449657	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.964	0.838	0.745	1e-137
356516035	346	PREDICTED: mRNA cap guanine-N7 methyltra	0.942	0.849	0.759	1e-135
356507590	359	PREDICTED: mRNA cap guanine-N7 methyltra	0.942	0.818	0.759	1e-135
357463871	359	mRNA cap guanine-N7 methyltransferase [M	0.932	0.810	0.736	1e-130
42565855	354	mRNA cap guanine-N7 methyltransferase 2	0.955	0.841	0.696	1e-126
79314795	355	mRNA cap guanine-N7 methyltransferase 2	0.958	0.842	0.693	1e-126
51968952	355	putative protein [Arabidopsis thaliana]	0.958	0.842	0.69	1e-125

>gi|224109904|ref|XP_002315350.1| predicted protein [Populus trichocarpa] gi|222864390|gb|EEF01521.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/287 (81%), Positives = 264/287 (91%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS  PIPR+E  HHRLYEFAK+A+IKI++HPY TVCDLYCG GVD++KW+ A I +YIGI
Sbjct: 1   MSGFPIPRTESAHHRLYEFAKSAIIKIFAHPYATVCDLYCGGGVDIEKWDAAQITHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           DVA+SGI E ++TWE+ +KN+ A+FF+ADPC+ENFETQ+QEKANQADLVCC Q+LQ+CFE
Sbjct: 61  DVASSGISEVKETWESLKKNYTADFFQADPCSENFETQLQEKANQADLVCCLQNLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE AR+LL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS SMKPN+VPNCIR
Sbjct: 121 TEESARKLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGSMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFEVEEEKFPLFGKKYQLKFA+DISAET CLVHFPSLIRLAREAGLEYVEIQNL
Sbjct: 181 SESYMITFEVEEEKFPLFGKKYQLKFAHDISAETHCLVHFPSLIRLAREAGLEYVEIQNL 240

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQK 287
            EFYDDNR  FAGM+M+AG NL+DPRGRLLPRSYDVLGLY+TFIFQK
Sbjct: 241 TEFYDDNRTQFAGMIMNAGLNLVDPRGRLLPRSYDVLGLYTTFIFQK 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449401|ref|XP_004142453.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus] gi|449513235|ref|XP_004164269.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 231/301 (76%), Positives = 260/301 (86%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS L  PR E THHRL +FAKTALIKI+SHPYVTVCDLYC  G D +KW+   I++YIGI
Sbjct: 1   MSQLVPPRGEWTHHRLCDFAKTALIKIFSHPYVTVCDLYCARGADAEKWDETQISHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D +TSGIG+ R+ WE+Q+K + AEFFE DPC EN ETQ+++K    D VCC QHLQMCFE
Sbjct: 61  DESTSGIGQMREAWESQKKAYTAEFFEVDPCVENIETQLKDKTETVDRVCCLQHLQMCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEERARRLL NVS+LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS+ MKPN+VPNCIR
Sbjct: 121 TEERARRLLHNVSALLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSAGMKPNIVPNCIR 180

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+I+FEVEEEKFPLFGKKYQLKFAND SAET CLVHFPS IRLAREAGLEY+EIQNL
Sbjct: 181 SESYMISFEVEEEKFPLFGKKYQLKFANDPSAETHCLVHFPSFIRLAREAGLEYIEIQNL 240

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            EF+DD+RA  A MLM+ G N++DPRGRLLPRSYDVLGLY+TFIFQKPDPD+ PP+ TPL
Sbjct: 241 TEFFDDHRAQLADMLMNFGQNILDPRGRLLPRSYDVLGLYTTFIFQKPDPDITPPIMTPL 300

Query: 301 L 301
           L
Sbjct: 301 L 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090379|emb|CBI40198.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/302 (74%), Positives = 260/302 (86%), Gaps = 1/302 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATP 299
           L +FYDDNRA FAGML+++GPNL+DPRGRLLPRSYDVLGLY+TFIFQK DPD+ PPL +P
Sbjct: 241 LTDFYDDNRAQFAGMLLNSGPNLVDPRGRLLPRSYDVLGLYTTFIFQKVDPDIVPPLTSP 300

Query: 300 LL 301
            +
Sbjct: 301 FI 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449657|ref|XP_002263006.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Vitis vinifera]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 225/302 (74%), Positives = 260/302 (86%), Gaps = 1/302 (0%)

Query: 1   MSVLPIPRS-ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIG 59
           M+ +P PR+ E THHRL+EFAKTALIKI+  PY TVCDLY GAG D DKW+ A I +YIG
Sbjct: 1   MTSIPAPRTAESTHHRLFEFAKTALIKIFVSPYATVCDLYAGAGSDADKWDEAQIGHYIG 60

Query: 60  IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF 119
           IDV++SGI   ++ WE+QRK++ A+F+E DP  EN E  +Q+K N AD+VCC QHLQ+ F
Sbjct: 61  IDVSSSGISHTKEVWESQRKSYNADFYELDPSMENLELNLQDKCNTADVVCCLQHLQLGF 120

Query: 120 ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI 179
           E E++ RRLL NV+SLLKPGGYF GITPDSSTIWAKYQKNVEAYHNR SSMKPN+VPNCI
Sbjct: 121 ENEDKGRRLLHNVASLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRGSSMKPNIVPNCI 180

Query: 180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN 239
           RSESY+ITFEVEEEKFP FGKKYQLKF+ND SAET CLVHFPSLIRLAREAGLEYVEIQN
Sbjct: 181 RSESYMITFEVEEEKFPFFGKKYQLKFSNDTSAETYCLVHFPSLIRLAREAGLEYVEIQN 240

Query: 240 LNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATP 299
           L +FYDDNRA FAGML+++GPNL+DPRGRLLPRSYDVLGLY+TFIFQK DPD+ PPL +P
Sbjct: 241 LTDFYDDNRAQFAGMLLNSGPNLVDPRGRLLPRSYDVLGLYTTFIFQKVDPDIVPPLTSP 300

Query: 300 LL 301
            +
Sbjct: 301 FI 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516035|ref|XP_003526702.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/295 (75%), Positives = 252/295 (85%), Gaps = 1/295 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I+ HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQPTQQRLYDFAKMALINIFVHPYATVCDLYCG-DADADKWAHAQIGHYIGIDAPSSGID 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+TWE  RK++ AEFFE DPC EN ET ++EK N  D+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Query: 249 ALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD 303
           A  AG+L    PNL+DPRGRLLPRSYD LGLY+TFIFQKPDP++APP+ TPLL D
Sbjct: 241 AQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIPTPLLPD 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507590|ref|XP_003522547.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Glycine max]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 224/295 (75%), Positives = 254/295 (86%), Gaps = 1/295 (0%)

Query: 9   SELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68
           S+ T  RLY+FAK ALI I++HPY TVCDLYCG   D DKW  A I +YIGID  +SGI 
Sbjct: 2   SQSTQQRLYDFAKMALINIFAHPYATVCDLYCG-DADADKWVDAQIGHYIGIDAPSSGIE 60

Query: 69  EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRL 128
           + R+ WE  RK++ AEFFE DPC +N ET ++EK N AD+VCC QHLQ+CFETEE+AR+L
Sbjct: 61  QMREAWEIHRKSYTAEFFELDPCTKNTETHLEEKTNVADVVCCLQHLQLCFETEEKARKL 120

Query: 129 LQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188
           L NVSSLLKPGGYFLGITPDSSTIWAKYQ+NVEAYHN+SSSMKPN+VPNCIR+E+Y+ITF
Sbjct: 121 LHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITF 180

Query: 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR 248
           EVEEEKFPLFGKKYQLKFAND+SAET CLVHFPS IRLAREAGLEYVEIQNL EFYDDNR
Sbjct: 181 EVEEEKFPLFGKKYQLKFANDVSAETHCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNR 240

Query: 249 ALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD 303
           A  AG+L    PNL+DPRGRLLPRSYD LGLY+TFIFQKPDP++APP+ATPLL D
Sbjct: 241 AQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIATPLLPD 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463871|ref|XP_003602217.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355491265|gb|AES72468.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/292 (73%), Positives = 247/292 (84%), Gaps = 1/292 (0%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           H RLY+FAK ALIKI++HPY TVC+LYCG   D  KW  + IANYIGIDV++S I + R 
Sbjct: 18  HQRLYDFAKMALIKIFAHPYATVCELYCGEASDAHKWLDSQIANYIGIDVSSSAIQQIRQ 77

Query: 73  TW-ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
           +  +N  K+    FF  DP  E+ E ++++K N  D VCC QHLQ+CFETEE+ARRLLQN
Sbjct: 78  SLGDNNNKSCTTHFFHLDPSTESIEIRLEDKTNTVDFVCCLQHLQLCFETEEKARRLLQN 137

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           VSSLLKPGGYFLGITPDSSTIWAKYQKNVE+YHNRSSSMKPN+VPNCIR+E+Y I FEVE
Sbjct: 138 VSSLLKPGGYFLGITPDSSTIWAKYQKNVESYHNRSSSMKPNIVPNCIRTENYTIAFEVE 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF 251
           EEKFPLFGKKYQLKFAND+SAET CLVHFPSLIRLAREAGLEYVEIQNL EFYDDNRA  
Sbjct: 198 EEKFPLFGKKYQLKFANDVSAETHCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNRAQL 257

Query: 252 AGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPLLQD 303
           AG+L +  PNL+D RG+LLPRSYDVLGLY+TFIFQKPDP++APP+ TP+LQD
Sbjct: 258 AGLLTNYAPNLLDTRGKLLPRSYDVLGLYTTFIFQKPDPEIAPPITTPILQD 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565855|ref|NP_190789.3| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|75105185|sp|Q5HZ60.1|MCES2_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 2; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 2; AltName: Full=mRNA cap methyltransferase 2 gi|57222116|gb|AAW38965.1| At3g52210 [Arabidopsis thaliana] gi|58531336|gb|AAW78590.1| At3g52210 [Arabidopsis thaliana] gi|332645393|gb|AEE78914.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 209/300 (69%), Positives = 253/300 (84%), Gaps = 2/300 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
           D  +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  DT-SSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 120 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 178

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 179 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 238

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 239 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79314795|ref|NP_001030844.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana] gi|332645395|gb|AEE78916.1| mRNA cap guanine-N7 methyltransferase 2 [Arabidopsis thaliana]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/300 (69%), Positives = 252/300 (84%), Gaps = 1/300 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+  EFFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVEFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 240 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968952|dbj|BAD43168.1| putative protein [Arabidopsis thaliana]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 207/300 (69%), Positives = 251/300 (83%), Gaps = 1/300 (0%)

Query: 1   MSVLPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGI 60
           MS   + + E +HHRL++FAKTA+I I++HPY TVC+LYCG   + DKWE A I +YIGI
Sbjct: 1   MSGFVVSKPEQSHHRLFDFAKTAIINIFAHPYATVCELYCGGAPETDKWEAAPIGHYIGI 60

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
              +SGI   R+ WE+QRKN+   FFEADP  ++FE Q+Q+K  QADLV C++HLQ+CFE
Sbjct: 61  VDTSSGISSVREAWESQRKNYDVGFFEADPSKDDFEIQLQKKLEQADLVSCWRHLQLCFE 120

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR 180
           TEE ARRLL NV+ LLKPGGYF GITPDSSTIWAKYQKNVEAYHNRS + KPN+ PN IR
Sbjct: 121 TEESARRLLTNVACLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSGA-KPNVFPNYIR 179

Query: 181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240
           SESY+ITFE+EEEKFPLFGK+YQLKF+ D ++E  CLVHFPSLIRLAREAGLE+VEIQ+L
Sbjct: 180 SESYMITFELEEEKFPLFGKRYQLKFSGDNASEDHCLVHFPSLIRLAREAGLEFVEIQSL 239

Query: 241 NEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAPPLATPL 300
            +FYDDNRA FA +LM+AGPN +DPRG+LLPR++D+LGLY+TFIFQKPDPD+ PPL TP+
Sbjct: 240 TDFYDDNRAQFASLLMNAGPNFVDPRGKLLPRAFDLLGLYATFIFQKPDPDIEPPLTTPI 299

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
FB|FBgn0001974	427	l(2)35Bd "lethal (2) 35Bd" [Dr	0.637	0.466	0.292	4.8e-21
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.836	0.705	0.285	6.8e-21
WB|WBGene00006447	380	tag-72 [Caenorhabditis elegans	0.685	0.563	0.308	2.9e-19
UNIPROTKB|Q9XVS1	380	tag-72 "mRNA cap guanine-N7 me	0.685	0.563	0.308	2.9e-19
ZFIN|ZDB-GENE-041008-25	400	rnmt "RNA (guanine-7-) methylt	0.493	0.385	0.316	4.3e-19
MGI|MGI:1915147	465	Rnmt "RNA (guanine-7-) methylt	0.493	0.331	0.295	2.7e-16
SGD|S000000440	436	ABD1 "Methyltransferase" [Sacc	0.692	0.495	0.316	2.9e-16
UNIPROTKB|F1MHQ5	477	RNMT "mRNA cap guanine-N7 meth	0.493	0.322	0.299	7e-16
POMBASE|SPCC330.10	360	pcm1 "P-TEFb-cap methyltransfe	0.830	0.719	0.258	6.8e-14
UNIPROTKB|Q9I8S2	402	rnmt "mRNA cap guanine-N7 meth	0.573	0.445	0.302	1e-12

FB|FBgn0001974 l(2)35Bd "lethal (2) 35Bd" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 65/222 (29%), Positives = 108/222 (48%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN--QRKN-------FIAEF 85
             V D+ CG G D+ KWE A I++ I  D+A   + + +  +++  QR         F AEF
Sbjct:   139 VLDMCCGKGGDLLKWEKAAISHLICTDIAEVSVEQCQRRYQDILQRSEKSKFANKFTAEF 198

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             F  D        + ++ + Q +LV C      CFE+  +A  +++N +  LKPGG+F+  
Sbjct:   199 FACDSTLVRLRERYKDPSLQLNLVSCQFAFHYCFESMAQADCMMRNAAECLKPGGFFIAT 258

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLK 205
              PD+  I  +          R++        N +    Y I F+ E +  PLFG KYQ  
Sbjct:   259 MPDAYEIIRRL---------RAAGPDARRFGNDV----YSIEFDCETDPLPLFGAKYQFH 305

Query:   206 FANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247
                 +    + LVHFP+L++L R+ GL+ ++     ++Y +N
Sbjct:   306 LEGVVDCP-EFLVHFPTLVKLGRKYGLQLLKRSTFADYYKEN 346

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 85/298 (28%), Positives = 140/298 (46%)

Query:     9 SELTH-HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
             S + H  +L  + K+ LI++Y+ P   V DL CG G D+ KW+ A I  Y+GID+A   I
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:    68 GEARDTWEN------QRKNFIAEFFEADPCAENFETQMQ---EKANQADLVCCFQHLQMC 118
              + R  +        +RK F   F     C + FE ++    E+    D+  C   +   
Sbjct:   121 EDCRTRYNGDADHHQRRKKF--SFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYS 178

Query:   119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
             + TE RARR L NVS+LL+PGG F+G  PD++ I  K ++        +  ++   + N 
Sbjct:   179 WTTEARARRALANVSALLRPGGVFIGTMPDANVIIKKLRE--------AEGLE---IGNS 227

Query:   179 IRSESYVITF--EVEEEKFPL---FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
             +    Y I F  E  ++KF     FG +Y     + +    + +V F     LA E  LE
Sbjct:   228 V----YWIRFGEEYSQKKFKSSSPFGIEYVFHLEDAVDCP-EWIVPFNVFKSLAEEYDLE 282

Query:   234 YVEIQNLNEFYDD--NRALFAGMLMSAGP--NLIDPRGRLLPRSYDVLGLYSTFIFQK 287
              V ++N +EF  +   +  F  ++   G   +  + +  L    ++   LY +F+ +K
Sbjct:   283 LVFVKNSHEFVHEYMKKPEFVELMRRLGALGDGSNDQSTLSADEWEAAYLYLSFVLRK 340

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

WB|WBGene00006447 tag-72 [Caenorhabditis elegans (taxid:6239)]

 Score = 233 (87.1 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 73/237 (30%), Positives = 109/237 (45%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQN----LNEFYDDNRALFAGML-MSAGPN 261
             ++   + L +FP +  L  E  +E + + N    +N++ +  R L   M  +   PN
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAEAINKWLEPGRRLLESMTGLETYPN 281

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA

UNIPROTKB|Q9XVS1 tag-72 "mRNA cap guanine-N7 methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 233 (87.1 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 73/237 (30%), Positives = 109/237 (45%)

Query:    35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---RKN--FIAEFFEAD 89
             V DL CG G D+ KW+ A   + +  DVA   I +A + ++     +KN  F  +F  AD
Sbjct:    58 VLDLACGKGGDLKKWDIAGAKDVVMADVADVSIQQAEERYKQMFGYKKNNIFTVQFIVAD 117

Query:    90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149
                EN E +++ K +  DLV C   L   F  E  AR  L+N   +LKPGG F+G  PD+
Sbjct:   118 CTKENLEDRIENK-DPFDLVSCQFALHYSFVDEASARIFLKNAVGMLKPGGVFIGTLPDA 176

Query:   150 STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFAND 209
               I       V +  N  +    N V  C    +Y    E+ E K PLFG K+       
Sbjct:   177 DRI-------VWSMRNGENGQFANEV--C--KITYENVEELAEGKVPLFGAKFHFSLDEQ 225

Query:   210 ISAETQCLVHFPSLIRLAREAGLEYVEIQN----LNEFYDDNRALFAGML-MSAGPN 261
             ++   + L +FP +  L  E  +E + + N    +N++ +  R L   M  +   PN
Sbjct:   226 VNCP-EFLAYFPLVKHLLEELDMELLFVHNFAEAINKWLEPGRRLLESMTGLETYPN 281

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)]

 Score = 191 (72.3 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
 Identities = 56/177 (31%), Positives = 86/177 (48%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-------FIAEF 85
             VTV DL CG G D+ KW+   I   +  D+A   I + +  + + R+        F AEF
Sbjct:   122 VTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYNDVRRRGHPNDRTFSAEF 181

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
               AD   E    ++Q+   Q D+  C       FE+E +A  +L+N    L+PGG+F+G 
Sbjct:   182 ITADCSRELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGT 241

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             TPD+  +     K +E     S S       N   +E + +TF+ + E +PLFG +Y
Sbjct:   242 TPDAYEL----VKRLE----ESDS-------NSFGNEVFSVTFQKKGE-YPLFGCQY 282

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

MGI|MGI:1915147 Rnmt "RNA (guanine-7-) methyltransferase" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
 Identities = 52/176 (29%), Positives = 83/176 (47%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN---QRKN---FIAEFF 86
             +TV DL CG G D+ KW    I+  +  D+A   + + +  +E+   +R N   F AEF 
Sbjct:   188 ITVLDLGCGKGGDLLKWRKGRISRLVCADIADISMKQCQQRYEDMRCRRDNEHIFSAEFI 247

Query:    87 EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
              AD   E    + ++     D+  C       FE++ +A  +L+N    L PGGYF+G T
Sbjct:   248 TADCSKELLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNACGRLNPGGYFIGTT 307

Query:   147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             P+S  +     + +EA    S             +E Y + F+ ++  +PLFG KY
Sbjct:   308 PNSFELI----RRLEASETESFG-----------NEIYTVKFQ-KKGNYPLFGCKY 347

GO:0003723 "RNA binding" evidence=ISO

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

GO:0080009 "mRNA methylation" evidence=ISO

SGD|S000000440 ABD1 "Methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 219 (82.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 73/231 (31%), Positives = 105/231 (45%)

Query:    21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK- 79
             K  LI  Y+ P   V +L CG G D+ K+  A I+ +IGID++ + I EA   + + R  
Sbjct:   154 KYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAGISQFIGIDISNASIQEAHKRYRSMRNL 213

Query:    80 NFIAEFFEADPCAENFETQMQEKAN---QADLVCCFQHLQMCFETEERARRLLQNVSSLL 136
             ++       D   E+    ++   +     D+V     L   FETEE+ARR L NV+  L
Sbjct:   214 DYQVVLITGDCFGESLGVAVEPFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSL 273

Query:   137 KPGGYFLGITPDSSTI---WAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEE 193
             K GG+F G  PDS  I     K+ K VE     +S  K     N  +   Y  T      
Sbjct:   274 KIGGHFFGTIPDSEFIRYKLNKFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFTS----- 328

Query:   194 KFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFY 244
               P +G+ Y     + I    + +V F +L  LA E GLE V     N+F+
Sbjct:   329 --P-YGQMYTYWLEDAIDNVPEYVVPFETLRSLADEYGLELVSQMPFNKFF 376

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IPI

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|F1MHQ5 RNMT "mRNA cap guanine-N7 methyltransferase" [Bos taurus (taxid:9913)]

 Score = 174 (66.3 bits), Expect = 7.0e-16, Sum P(3) = 7.0e-16
 Identities = 53/177 (29%), Positives = 83/177 (46%)

Query:    33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ----RKN---FIAEF 85
             +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+     R N   F AEF
Sbjct:   199 ITVLDLGCGKGGDLLKWKKGRIDKLVCTDIADVSVRQCQQRYEDMKNRCRDNEYIFSAEF 258

Query:    86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
               AD   E    + +++    D+  C       FE+ E+A  +L+N    L PGGYF+G 
Sbjct:   259 ITADCSKELLTDKFRDREMCFDICSCQFVCHYSFESYEQADVMLRNACERLSPGGYFIGT 318

Query:   146 TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY 202
             TP+S  +     + +EA    S             +E Y + F+ + + +PLFG KY
Sbjct:   319 TPNSFELI----RRLEASETESFG-----------NEIYTVKFQKKGD-YPLFGCKY 359

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

POMBASE|SPCC330.10 pcm1 "P-TEFb-cap methyltransferase Pcm1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 199 (75.1 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 73/282 (25%), Positives = 126/282 (44%)

Query:    15 RLYEFAKTALIKIYS-HP--Y-VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA 70
             R   + K+ LI+ ++ H   Y + V D+ CG G D+ KW+ A I  YIGID+A   + +A
Sbjct:    90 RFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGDLIKWDKAGIDGYIGIDIAEVSVNQA 149

Query:    71 RDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
             +  +     +F A F+  D  + +    +     + D+V     +   FE+EE+ R LL 
Sbjct:   150 KKRYREMHASFDALFYAGDCFSSSINELLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLG 209

Query:   131 NVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF-E 189
             NVS  L  GG  +G  P+S  I  K+ K           +KP        ++ Y + F E
Sbjct:   210 NVSKCLPRGGVMIGTIPNSDVI-VKHIK----------MLKPG--EKEWGNDIYKVRFPE 256

Query:   190 VEEEKF-PLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN-LNEFYDDN 247
                  F P +G +Y     + ++   + +V F +   +A    LE + ++  L+   ++ 
Sbjct:   257 SPPRSFRPPYGIQYYFYLEDAVTDVPEYVVPFEAFRAVAEGYNLELIWVKPFLDILNEEK 316

Query:   248 RALFAGMLMSAGPNLIDPRGR--LLPRSYDVLGLYSTFIFQK 287
              +   G LM     ++D  G   +  +  +  G Y  F F+K
Sbjct:   317 NSETYGPLMDR-MKVVDNEGHRGIGGQEKEAAGFYLAFAFEK 357

GO:0001510 "RNA methylation" evidence=IC

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IGI

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IGI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0032153 "cell division site" evidence=IDA

GO:0070693 "P-TEFb-cap methyltransferase complex" evidence=IDA

UNIPROTKB|Q9I8S2 rnmt "mRNA cap guanine-N7 methyltransferase" [Xenopus laevis (taxid:8355)]

 Score = 186 (70.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
 Identities = 63/208 (30%), Positives = 100/208 (48%)

Query:     8 RSELTHHRLYE-FAKTALI-----KIYSHPY-VTVCDLYCGAGVDVDKWETALIANYIGI 60
             +S + H R +  + K+ALI     K+      +TV DL CG G D+ KW    I+  +  
Sbjct:    93 QSRIFHLRNFNNWMKSALIGEFVEKVQQRTRNITVLDLGCGKGGDLLKWRKGGISKLVCT 152

Query:    61 DVATSGIGEARDTWEN-QRKN-----FIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114
             D+A   + +    +++ +RK+     F AEF  +D   E    +  +   + D+  C   
Sbjct:   153 DIADVSVKQCEQRYKDMKRKSRNERIFEAEFLTSDSTKELLSEKYIDPEIKFDICSCQFV 212

Query:   115 LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNL 174
                 FET E+A  +L+N    L PGG+F+G TPD   +     K +EA    S +     
Sbjct:   213 YHYSFETYEQADTMLRNACERLCPGGFFIGTTPDGFEL----VKRLEA----SDT----- 259

Query:   175 VPNCIRSESYVITFEVEEEKFPLFGKKY 202
               N   ++ Y +TFE ++ K+PLFG KY
Sbjct:   260 --NSFGNDVYTVTFE-KKGKYPLFGCKY 284

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5HZ60	MCES2_ARATH	2, ., 1, ., 1, ., 5, 6	0.6966	0.9551	0.8418	yes	no
Q6K833	MCES2_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.6928	0.9262	0.8525	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.963
4th Layer	2.1.1.56	0.946
4th Layer	2.1.1.145	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0022048701 hypothetical protein (288 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	2e-33
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	4e-08
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-07
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	6e-06
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	4e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	7e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.003

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  124 bits (314), Expect = 2e-33
 Identities = 79/294 (26%), Positives = 129/294 (43%), Gaps = 41/294 (13%)

Query: 21  KTALIKIY-SH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW 74
           K+ LI +Y S      P   V DL CG G D++K+    I+  IG D+A   I +A++ +
Sbjct: 47  KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERY 106

Query: 75  E------NQRKN---FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
                    +     FIAEF   D    +     +    + D+V     +   FE+EE+A
Sbjct: 107 NDLNSRSKSKYYKFDFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKA 166

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
           R +L+N++ LL  GG F+G TPD   I  K           +     +   N I    Y 
Sbjct: 167 RTMLRNLAELLASGGKFIGTTPDGDFIIKKLT--------ATFVEHKSF-GNSI----YY 213

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           ++FE ++   P FG KY     + ++   + LV F +L+ LA E GLE V+ +  ++ Y+
Sbjct: 214 VSFE-KDPPRPPFGIKYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFHDIYN 272

Query: 246 DN-RALFAGMLM---------SAGPNLIDPRGRLLPRSYDV--LGLYSTFIFQK 287
           +  +   + ML+          A    ++          +   L LY  F+F+K
Sbjct: 273 EEIKKYRSKMLINRMSGLESRPATYFELNRLALGTLEGDEWEALLLYLVFVFEK 326

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 33  VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFI--AEFFEA 88
           + V DL CG G         L   A  +GID++   I +A+   EN +K      EF + 
Sbjct: 5   IKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAK---ENAKKLGYENVEFIQG 61

Query: 89  DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148
           D   E      Q + N  D+V   + L    + ++    +L+ +  +LKPGG  +   P 
Sbjct: 62  D--IEELPQL-QLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKPGGVLIVSDPV 114

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V DL CG G       +   A   G+D++   +  AR        + + E  + D    
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNV-EVLKGD---- 55

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
             E    E     D++             E   R L+    LLKPGG  +
Sbjct: 56  -AEELPPEADESFDVIISD---PPLHHLVEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 9/106 (8%)

Query: 35  VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94
           + DL CG G  +     A  ++  G+D++   +  A++    + K     F  AD     
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKER--LRDKGPKVRFVVADA---- 54

Query: 95  FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG 140
               +  +    DLV C          ++  R LL+  + LL+PGG
Sbjct: 55  --RDLPFEEGSFDLVICAGLSLDYLSPKQ-LRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 37  DLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96
           D+ CG G+  +       A   G+D++   +  AR     +R     +F   D     F 
Sbjct: 2   DVGCGTGLLAEALARRGGARVTGVDLSPEMLALAR-----KRAPR--KFVVGDAEDLPFP 54

Query: 97  TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                     D+V                 R L+ ++ +LKPGG  +
Sbjct: 55  ------DESFDVVVSSL----VLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 27/126 (21%), Positives = 38/126 (30%), Gaps = 26/126 (20%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            V D+ CG G+ +         +  G+D                     + F   DP   
Sbjct: 25  RVLDIGCGTGILLRLLRERG-FDVTGVD------------PSPAAVLIFSLFDAPDP--- 68

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
                    A + DL+  F       E       LLQ +  LLKPGG  L  TP +    
Sbjct: 69  ------AVLAGKYDLITAF----EVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDA 118

Query: 154 AKYQKN 159
             +   
Sbjct: 119 RLFANW 124

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 37  DLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95
           D+ CG G  +     AL    Y G+D++ + +  A +          A     D      
Sbjct: 2   DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAER-LAALGLLDAVRVRLDVLDAID 60

Query: 96  ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                      D+V     L          R +L+N+  LLKPGG  
Sbjct: 61  L-----DPGSFDVVVASNVLH-HLAD---PRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 29/118 (24%)

Query: 34  TVCDLYCGAGVDVDKWETALIA------NYIGIDVATSGIGEARDTWENQRKNFIA--EF 85
            V D+ CG G          +A         G+D++   +  AR   EN +        F
Sbjct: 4   RVLDIGCGTG-----SLAIELARLFPGARVTGVDLSPEMLELAR---ENAKLALGPRITF 55

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
            + D  A +    ++      D V          E       LL  ++SLLKPGG  +
Sbjct: 56  VQGD--APDALDLLEG----FDAVFIGGGGGDLLE-------LLDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	100.0
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.88
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.87
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.79
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.78
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.77
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.76
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.76
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.75
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.74
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.74
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.74
PLN02244	340	tocopherol O-methyltransferase	99.74
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.74
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.69
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.69
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.69
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.69
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.68
PRK05785	226	hypothetical protein; Provisional	99.68
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.68
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.67
PRK11207	197	tellurite resistance protein TehB; Provisional	99.66
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.65
KOG1271	227	consensus Methyltransferases [General function pre	99.64
PLN02336	475	phosphoethanolamine N-methyltransferase	99.63
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.63
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.63
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.61
PLN02490	340	MPBQ/MSBQ methyltransferase	99.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.59
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.59
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.59
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.59
PRK12335	287	tellurite resistance protein TehB; Provisional	99.59
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.58
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.57
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.57
KOG4300	252	consensus Predicted methyltransferase [General fun	99.56
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.56
TIGR03438	301	probable methyltransferase. This model represents	99.56
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.55
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.55
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.55
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.54
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.54
PRK06202	232	hypothetical protein; Provisional	99.54
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.52
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.52
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.52
PRK06922	677	hypothetical protein; Provisional	99.51
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.51
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.51
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.5
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.5
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.49
PLN03075	296	nicotianamine synthase; Provisional	99.49
PRK08317	241	hypothetical protein; Provisional	99.48
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.48
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.48
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.48
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.47
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.47
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.47
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.47
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.43
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.42
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.41
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.41
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
PRK14967	223	putative methyltransferase; Provisional	99.4
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.39
PRK04266	226	fibrillarin; Provisional	99.37
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.37
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.37
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.37
COG4123	248	Predicted O-methyltransferase [General function pr	99.36
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.36
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.36
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.35
PRK14968	188	putative methyltransferase; Provisional	99.34
KOG2361	264	consensus Predicted methyltransferase [General fun	99.34
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.34
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.34
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.31
TIGR00438	188	rrmJ cell division protein FtsJ.	99.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.28
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.28
KOG3010	261	consensus Methyltransferase [General function pred	99.28
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.27
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.26
PRK07402	196	precorrin-6B methylase; Provisional	99.26
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.24
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.24
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.21
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.2
PRK04457	262	spermidine synthase; Provisional	99.19
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.18
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.17
PRK00811	283	spermidine synthase; Provisional	99.17
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.17
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.16
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.15
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.14
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.13
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.13
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.13
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.12
PTZ00146	293	fibrillarin; Provisional	99.12
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.11
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.1
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.1
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.1
PHA03411	279	putative methyltransferase; Provisional	99.09
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.08
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.08
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.08
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.05
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.03
PHA03412	241	putative methyltransferase; Provisional	99.01
PRK01581	374	speE spermidine synthase; Validated	99.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.0
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.99
COG2890	280	HemK Methylase of polypeptide chain release factor	98.99
PLN02366	308	spermidine synthase	98.98
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.98
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.96
KOG2940	325	consensus Predicted methyltransferase [General fun	98.94
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.94
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.92
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.92
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.92
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.91
KOG2904	328	consensus Predicted methyltransferase [General fun	98.89
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.88
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.87
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.87
PRK03612	521	spermidine synthase; Provisional	98.86
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.86
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.85
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.84
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.83
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.82
KOG2899	288	consensus Predicted methyltransferase [General fun	98.82
PLN02476	278	O-methyltransferase	98.82
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.81
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.78
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.76
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.75
PLN02672	1082	methionine S-methyltransferase	98.74
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.74
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.73
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.71
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.7
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.69
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.69
COG4122	219	Predicted O-methyltransferase [General function pr	98.66
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.65
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.63
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.63
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.63
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.61
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.58
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.58
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.57
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.57
PRK04148	134	hypothetical protein; Provisional	98.55
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.54
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.54
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.49
PLN02823	336	spermine synthase	98.49
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.48
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.46
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.45
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.38
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.37
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.36
KOG1331	293	consensus Predicted methyltransferase [General fun	98.34
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.34
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.31
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.28
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.28
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.27
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.27
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.27
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.25
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.23
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.22
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.21
COG2521	287	Predicted archaeal methyltransferase [General func	98.2
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.19
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.16
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.16
PRK00536	262	speE spermidine synthase; Provisional	98.15
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.14
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.13
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.13
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.08
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.08
COG2520	341	Predicted methyltransferase [General function pred	98.07
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.05
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.98
PF13679	141	Methyltransf_32: Methyltransferase domain	97.97
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.97
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.96
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.94
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.91
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.81
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.8
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.77
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.76
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.75
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.72
COG3897	218	Predicted methyltransferase [General function pred	97.71
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.67
KOG2730	263	consensus Methylase [General function prediction o	97.64
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.6
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.58
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.56
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.56
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.55
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.54
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.49
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.47
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.44
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.4
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.38
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.37
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.28
COG4076	252	Predicted RNA methylase [General function predicti	97.28
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.27
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.25
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.18
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.08
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.06
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.05
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.05
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.99
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.95
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.92
COG0286	489	HsdM Type I restriction-modification system methyl	96.83
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	96.75
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.74
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.72
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.61
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.45
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.39
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.28
KOG3115	249	consensus Methyltransferase-like protein [General	96.19
PRK11524	284	putative methyltransferase; Provisional	95.93
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.82
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.65
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.64
PRK13699	227	putative methylase; Provisional	95.56
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.52
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.49
PRK10742	250	putative methyltransferase; Provisional	95.48
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.47
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.45
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.45
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.38
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.27
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.18
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.16
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.09
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	95.03
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.91
PHA01634	156	hypothetical protein	94.86
COG4301	321	Uncharacterized conserved protein [Function unknow	94.83
KOG2671	421	consensus Putative RNA methylase [Replication, rec	94.59
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.57
COG4798	238	Predicted methyltransferase [General function pred	94.39
PF03269	177	DUF268: Caenorhabditis protein of unknown function	94.23
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.16
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.14
KOG1227	351	consensus Putative methyltransferase [General func	94.13
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.1
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.04
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.43
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	92.96
KOG1501	636	consensus Arginine N-methyltransferase [General fu	92.82
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	92.82
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	92.75
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	92.62
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	92.29
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.0
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.63
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.25
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	91.0
KOG2920	282	consensus Predicted methyltransferase [General fun	90.96
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.93
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	90.63
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	90.62
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.41
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.06
COG3315	297	O-Methyltransferase involved in polyketide biosynt	89.78
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	89.56
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	88.7
PTZ00357	1072	methyltransferase; Provisional	88.69
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	88.24
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.62
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	86.64
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	86.51
PRK10458	467	DNA cytosine methylase; Provisional	86.2
COG1565	370	Uncharacterized conserved protein [Function unknow	86.13
PRK11524	284	putative methyltransferase; Provisional	85.24
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.9
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.45
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	83.77
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	83.56
KOG3924	419	consensus Putative protein methyltransferase invol	83.23
KOG2352	482	consensus Predicted spermine/spermidine synthase [	83.22
PRK03659	601	glutathione-regulated potassium-efflux system prot	83.14
COG1255	129	Uncharacterized protein conserved in archaea [Func	81.88
PRK13699	227	putative methylase; Provisional	81.3
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.91
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	80.66
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	80.64
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.17
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	80.12

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=100.00  E-value=1.6e-59  Score=432.27  Aligned_cols=271  Identities=36%  Similarity=0.656  Sum_probs=208.2

Q ss_pred             CCCCcch---HHhHHHHHHHHHHHHhcC------CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467            6 IPRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus         6 ~~R~~~~---~~~~~n~vk~~li~~~~~------~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      ..|.+|+   ++++|||||++||+.+++      ++.+|||||||.|||+.||..++...|+|+|||.++|++|++|++.
T Consensus        28 ~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~  107 (331)
T PF03291_consen   28 KERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ  107 (331)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred             hhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4577776   567899999999999998      8899999999999999999999999999999999999999999943


Q ss_pred             c---------CCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467           77 Q---------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        77 ~---------~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      .         ...+.+.|+.+|+....+...+.....+||+|+|+|++||+|++++.++.+|+|+++.|+|||+||+|+|
T Consensus       108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            1         1246789999999987776655544469999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHH
Q 021467          148 DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLA  227 (312)
Q Consensus       148 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~  227 (312)
                      |++.|++++++...      . .....|||    ++|+|+|+.+ ...|.||++|.|+|++++.+||||||+|+.|+++|
T Consensus       188 d~~~i~~~l~~~~~------~-~~~~~~gN----~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la  255 (331)
T PF03291_consen  188 DSDEIVKRLREKKS------N-SEKKKFGN----SVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLA  255 (331)
T ss_dssp             -HHHHHCCHHC-EE------E-CCCSCSET----SSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHH
T ss_pred             CHHHHHHHHHhhcc------c-ccccccCC----ccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHH
Confidence            99999888875211      0 01124555    5799999876 57899999999999999889999999999999999


Q ss_pred             HHcCcEEEEecCchHHHHhhHHHH--HHHHHhcCC-CCC-----------CCCCCCChhHHHHhh-hheeeEEeec
Q 021467          228 REAGLEYVEIQNLNEFYDDNRALF--AGMLMSAGP-NLI-----------DPRGRLLPRSYDVLG-LYSTFIFQKP  288 (312)
Q Consensus       228 ~e~Gl~lv~~~~f~~~~~~~~~~~--~~~~~~~~~-~~~-----------~~~~~l~~~e~e~~~-ly~~f~F~K~  288 (312)
                      ++|||++|+..+|++||+++.+..  ..+++++.. .-.           ...|+||.+|||+++ ||++|||+|.
T Consensus       256 ~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~~lY~~F~F~K~  331 (331)
T PF03291_consen  256 KEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAASSLYLVFAFKKK  331 (331)
T ss_dssp             HHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHCTTEEEEEEEE-
T ss_pred             HHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHHhheEEEEEEeC
Confidence            999999999999999999753221  122222211 000           013689999999999 9999999995

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=100.00  E-value=6.9e-59  Score=410.46  Aligned_cols=272  Identities=32%  Similarity=0.506  Sum_probs=233.8

Q ss_pred             CCCcch---HHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC----
Q 021467            7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK----   79 (312)
Q Consensus         7 ~R~~~~---~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~----   79 (312)
                      .|..||   ++++|||||++||+.|.+++..+||||||+|||+.+|.++++..|+|+||+..+|++|++|++++..    
T Consensus        90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~  169 (389)
T KOG1975|consen   90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK  169 (389)
T ss_pred             hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence            477777   5678999999999999999999999999999999999999999999999999999999999987532    


Q ss_pred             -CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467           80 -NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (312)
Q Consensus        80 -~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~  158 (312)
                       .+++.|+++|++...+.+.+..++.+||+|+|||++||+|+++++++.+|+|++++|||||+||+|+||++.|++++++
T Consensus       170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~  249 (389)
T KOG1975|consen  170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA  249 (389)
T ss_pred             ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence             3569999999999887776654455699999999999999999999999999999999999999999999999999986


Q ss_pred             hHHhhhcCCCCCCCCCCCCcccCceEEEEecccC---CCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEE
Q 021467          159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV  235 (312)
Q Consensus       159 ~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~---~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv  235 (312)
                      . +          ...|||+    +|+|+|+.+.   ...|+||.+|+|+|+++|. ||||||+|+.|+.+|++|||+||
T Consensus       250 ~-e----------~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv  313 (389)
T KOG1975|consen  250 G-E----------VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELV  313 (389)
T ss_pred             c-c----------chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEE
Confidence            3 1          1256775    6888876432   2379999999999999764 99999999999999999999999


Q ss_pred             EecCchHHHHhhHHHH--HHHHHhcC-CCCCCCCCCCChhHHHHhhhheeeEEeecCCCCCC
Q 021467          236 EIQNLNEFYDDNRALF--AGMLMSAG-PNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAP  294 (312)
Q Consensus       236 ~~~~f~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~e~e~~~ly~~f~F~K~~~~~~~  294 (312)
                      ..++|++||+++.+..  ..|+++|. ..-...+...+.+|||++++|.+|+++|.+-...+
T Consensus       314 ~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~~g  375 (389)
T KOG1975|consen  314 FVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRYEG  375 (389)
T ss_pred             EeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhcccccccc
Confidence            9999999999987654  78888873 22222344678899999999999999998754433

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.88  E-value=5e-22  Score=174.31  Aligned_cols=181  Identities=24%  Similarity=0.327  Sum_probs=129.7

Q ss_pred             HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      +..++... ..++.+|||+|||||..+..+++. +..+++|+|+|+.||+.|+++....+... ++|+++|+...++   
T Consensus        40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf---  115 (238)
T COG2226          40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF---  115 (238)
T ss_pred             HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC---
Confidence            44455544 347999999999999888877765 56799999999999999999998765444 9999999999998   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhHHhhhcCCCCCCCCCC
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLV  175 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~  175 (312)
                         ++++||+|++.+++|+    ..+.+.+|+++.|+|||||++++.   .|+...+...+........      - ..+
T Consensus       116 ---~D~sFD~vt~~fglrn----v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v------~-P~~  181 (238)
T COG2226         116 ---PDNSFDAVTISFGLRN----VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYV------L-PLI  181 (238)
T ss_pred             ---CCCccCEEEeeehhhc----CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhH------h-hhh
Confidence               8899999999999998    446889999999999999999887   3444333332221111000      0 012


Q ss_pred             CCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          176 PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       176 gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                      |..+       ..         -...|.| |.+++..    +...+.|.++.++.||+.+...++
T Consensus       182 g~~~-------~~---------~~~~y~y-L~eSi~~----~p~~~~l~~~~~~~gf~~i~~~~~  225 (238)
T COG2226         182 GKLV-------AK---------DAEAYEY-LAESIRR----FPDQEELKQMIEKAGFEEVRYENL  225 (238)
T ss_pred             ceee-------ec---------ChHHHHH-HHHHHHh----CCCHHHHHHHHHhcCceEEeeEee
Confidence            2210       00         0112444 5566543    558889999999999998885544

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.87  E-value=3.4e-22  Score=176.55  Aligned_cols=165  Identities=25%  Similarity=0.371  Sum_probs=81.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..+++.  +..+|+|+|+|++|++.|+++....+.. +++++++|+.+.++      ++++|
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~------~d~sf  117 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF------PDNSF  117 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------TT-E
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC------CCCce
Confidence            347889999999999666666554  3469999999999999999999875432 69999999999888      78999


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~  183 (312)
                      |+|+|.+++|+.    .+...+++++.|+|||||.+++.   .|+... +..+.+.                        
T Consensus       118 D~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~-~~~~~~~------------------------  168 (233)
T PF01209_consen  118 DAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPL-LRALYKF------------------------  168 (233)
T ss_dssp             EEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH-HHHHHHH------------------------
T ss_pred             eEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCch-hhceeee------------------------
Confidence            999999999983    34777999999999999999877   454432 2222111                        


Q ss_pred             EEEEecccCCCCCcce-------eeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          184 YVITFEVEEEKFPLFG-------KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       184 y~i~f~~~~~~~~~~G-------~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                      |.-      ...|.+|       ..|.| |.+++..    +.+.+.|.++++++||+.++..++
T Consensus       169 y~~------~ilP~~g~l~~~~~~~Y~y-L~~Si~~----f~~~~~~~~~l~~~Gf~~v~~~~~  221 (233)
T PF01209_consen  169 YFK------YILPLIGRLLSGDREAYRY-LPESIRR----FPSPEELKELLEEAGFKNVEYRPL  221 (233)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             eec------ccccccccccccccccccc-ccccccc----cccccccccccccccccccccccc
Confidence            000      0112222       23666 7777644    558899999999999999887655

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.79  E-value=2.1e-18  Score=158.97  Aligned_cols=161  Identities=16%  Similarity=0.218  Sum_probs=114.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++.. ..+|+|+|+|++|++.|+++.........+.++++|+.+.++      .+++||+|+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi  203 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL  203 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence            4569999999999877766654 458999999999999999886544322358899998765443      457899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecc
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~  190 (312)
                      |..++||    ..+...+++++.++|||||.+++++++.....  +....              .+.     .|...+  
T Consensus       204 ~~~vLeH----v~d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~~--  256 (322)
T PLN02396        204 SLEVIEH----VANPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILRW--  256 (322)
T ss_pred             EhhHHHh----cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHhc--
Confidence            9999888    33467899999999999999999998864321  10000              000     010000  


Q ss_pred             cCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (312)
Q Consensus       191 ~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~  241 (312)
                          .|. |.           .....+++++.+.++++++||++++...+.
T Consensus       257 ----lp~-gt-----------h~~~~f~tp~eL~~lL~~aGf~i~~~~G~~  291 (322)
T PLN02396        257 ----LPK-GT-----------HQWSSFVTPEELSMILQRASVDVKEMAGFV  291 (322)
T ss_pred             ----CCC-CC-----------cCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence                010 10           001136789999999999999999987764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.78  E-value=2.8e-18  Score=134.16  Aligned_cols=109  Identities=27%  Similarity=0.333  Sum_probs=89.6

Q ss_pred             CCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~-~~~~~~~~~~~~~~~fD~  108 (312)
                      |+.+|||||||+|..+..+++ .+..+++|+|+|++|++.|+++....+...+++++++|+ ....       ...+||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence            578999999999988888877 366799999999999999999996555556799999999 2222       2467999


Q ss_pred             EEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++.. ++|..+. .++.+.+++++.+.|+|||++++..+
T Consensus        74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99999 6664333 37889999999999999999998753

...

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.77  E-value=6.1e-18  Score=146.54  Aligned_cols=160  Identities=18%  Similarity=0.248  Sum_probs=120.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C------CCeEEEEeCChHHHHHHHHHHHhcCCCc--eEEEEEcCCCCCchhhhhhh
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~------~~~v~giDis~~~i~~a~~r~~~~~~~~--~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++++|||+|||+|..+..++.. .      ..+|+++||+++||..+++|....+...  .+.++++|+.+.++      
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF------  173 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF------  173 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC------
Confidence            6789999999999777666654 2      3689999999999999999986654432  38999999999988      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe-cChh--HHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT-PDSS--TIWAKYQKNVEAYHNRSSSMKPNLVPNC  178 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~-p~~~--~l~~~~~~~~~~~~~~~~~~~~~~~gn~  178 (312)
                      ++.+||+.++.|+++++    .+....|+++.|+|||||+|.+.- +-.+  .+...++.                    
T Consensus       174 dd~s~D~yTiafGIRN~----th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~--------------------  229 (296)
T KOG1540|consen  174 DDDSFDAYTIAFGIRNV----THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ--------------------  229 (296)
T ss_pred             CCCcceeEEEecceecC----CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh--------------------
Confidence            78999999999999883    447888999999999999999773 3222  22222211                    


Q ss_pred             ccCceEEEEecccCCCCCccee-------eeEEeEcccccCCCccccchHHHHHHHHHcCcEEEE
Q 021467          179 IRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE  236 (312)
Q Consensus       179 ~~~~~y~i~f~~~~~~~~~~G~-------~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~  236 (312)
                           |+  |    +.+|..|.       .|+| |.+++...    .+-+.|..+.+++||..+.
T Consensus       230 -----ys--f----~VlpvlG~~iagd~~sYqY-LveSI~rf----p~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  230 -----YS--F----DVLPVLGEIIAGDRKSYQY-LVESIRRF----PPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             -----hh--h----hhhchhhHhhhhhHhhhhh-HHhhhhcC----CCHHHHHHHHHHcCCcccc
Confidence                 11  1    12343442       3666 66676554    4888999999999999986

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.76  E-value=1.4e-17  Score=149.90  Aligned_cols=109  Identities=19%  Similarity=0.149  Sum_probs=87.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~--~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .++.+|||+|||+|..+..+... + ..+|+|+|+|++|++.|+++...  .....+++++++|+.+.++      ++++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~s  145 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDCY  145 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCCC
Confidence            46789999999999876666554 2 35899999999999999987642  1112248999999988776      6789


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++.+++|+.    .+...+++++.++|||||+++++...
T Consensus       146 fD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        146 FDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             EeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            9999999999983    34788999999999999999887433

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=7.4e-18  Score=150.59  Aligned_cols=203  Identities=18%  Similarity=0.216  Sum_probs=149.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.||.+|||||||.|+.+..+++.-..+|+|+++|+++.+.+++++...+...++++...|..+.         .++||-
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDr  140 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDR  140 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccce
Confidence            45999999999999998888887756799999999999999999999888766788888887652         355999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f  188 (312)
                      |++..+++|  ...+....+++++.++|+|||.++..+.....-                        .      +.   
T Consensus       141 IvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~------------------------~------~~---  185 (283)
T COG2230         141 IVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQ------------------------E------FR---  185 (283)
T ss_pred             eeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCc------------------------c------cc---
Confidence            999998888  567779999999999999999999774332100                        0      00   


Q ss_pred             cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 021467          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR  268 (312)
Q Consensus       189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (312)
                           ..+.|-.+|.|        ...++.+.+.+.+.+.+.||.+....++-..|......|...++..........+.
T Consensus       186 -----~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~~~e  252 (283)
T COG2230         186 -----RFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIALYDE  252 (283)
T ss_pred             -----cchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                 22456667776        23457788999999999999999999999999987777766554321111101111


Q ss_pred             CChhHHHHhhhheeeEEeec
Q 021467          269 LLPRSYDVLGLYSTFIFQKP  288 (312)
Q Consensus       269 l~~~e~e~~~ly~~f~F~K~  288 (312)
                      --..-|+..-.++...|+.-
T Consensus       253 ~~~r~w~~yl~~~~~~Fr~~  272 (283)
T COG2230         253 RFYRMWELYLAACAAAFRAG  272 (283)
T ss_pred             HHHHHHHHHHHHHHHHhccC
Confidence            12234666666666666544

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.75  E-value=1.4e-16  Score=143.61  Aligned_cols=157  Identities=15%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....   .++.+.++|+...++      ++++||+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~  120 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM  120 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence            4578999999999998877776544459999999999999999987542   248899999887665      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH---HHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST---IWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV  185 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~---l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~  185 (312)
                      |++..+++|  .+.++...++++++++|||||.++++.+....   ....+..                           
T Consensus       121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~---------------------------  171 (263)
T PTZ00098        121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA---------------------------  171 (263)
T ss_pred             EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH---------------------------
Confidence            999888776  34557889999999999999999988443211   0000000                           


Q ss_pred             EEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHh
Q 021467          186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (312)
Q Consensus       186 i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~  246 (312)
                                      |   +...    ...+.+.+.+.++++++||+.+...+..+++..
T Consensus       172 ----------------~---~~~~----~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~  209 (263)
T PTZ00098        172 ----------------Y---IKKR----KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE  209 (263)
T ss_pred             ----------------H---HHhc----CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH
Confidence                            0   0000    012457889999999999999998887777655

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.74  E-value=1e-17  Score=126.31  Aligned_cols=95  Identities=26%  Similarity=0.351  Sum_probs=82.0

Q ss_pred             EEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccch
Q 021467           36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL  115 (312)
Q Consensus        36 LDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l  115 (312)
                      ||+|||+|..+..+.+.+..+|+|+|+|+++++.++++....+    ..+.++|+...++      ++++||+|++..++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~------~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF------PDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc------ccccccccccccce
Confidence            8999999988888887767799999999999999999987655    6699999999887      68999999999999


Q ss_pred             hhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467          116 QMCFETEERARRLLQNVSSLLKPGGYFLG  144 (312)
Q Consensus       116 h~~~~~~~~~~~~l~~i~~~LkpGG~~i~  144 (312)
                      |+.    ++...+++++.|+|||||++++
T Consensus        71 ~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   71 HHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            983    7789999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.74  E-value=3.7e-17  Score=146.80  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +++....++.+|||+|||+|..+..++..+ .+|+|+|+|++|++.|+++....+...+++++++|+.+...     ..+
T Consensus        37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~  110 (255)
T PRK11036         37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE  110 (255)
T ss_pred             HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence            444444567899999999998888877664 59999999999999999998776544458899998865321     035


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~  183 (312)
                      ++||+|+|..++|++    .+...+++++.++|||||+++++.++.+.+..+.  .+              .||.     
T Consensus       111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~--~~--------------~~~~-----  165 (255)
T PRK11036        111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHN--MV--------------AGNF-----  165 (255)
T ss_pred             CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHH--HH--------------ccCh-----
Confidence            789999999999983    3456889999999999999999988875442111  00              0110     


Q ss_pred             EEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecC---chHHHHh
Q 021467          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN---LNEFYDD  246 (312)
Q Consensus       184 y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~---f~~~~~~  246 (312)
                           +......+ ...+..  +      .|.+.++++.+.++++++||+++....   |+++..+
T Consensus       166 -----~~~~~~~~-~~~~~~--~------~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~  217 (255)
T PRK11036        166 -----DYVQAGMP-KRKKRT--L------SPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRN  217 (255)
T ss_pred             -----HHHHhcCc-cccccC--C------CCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence                 00000000 000000  0      123456789999999999999997654   6666544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.74  E-value=3.6e-17  Score=137.73  Aligned_cols=166  Identities=18%  Similarity=0.220  Sum_probs=123.4

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+|..+++|+.+|||||||.|..+..+...+....+|+|++++.+..|.++-        +..+++|+.+. +. .+  +
T Consensus         5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~g-L~-~f--~   72 (193)
T PF07021_consen    5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEG-LA-DF--P   72 (193)
T ss_pred             HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHh-Hh-hC--C
Confidence            4677788999999999999997777776667779999999999999888774        67899998663 21 11  6


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCc
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE  182 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~  182 (312)
                      +++||.|+++.+++.    ....+.+|+++   ||-|...|+++||...+..|++-..     +         |+...++
T Consensus        73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-----~---------GrmPvt~  131 (193)
T PF07021_consen   73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-----R---------GRMPVTK  131 (193)
T ss_pred             CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-----c---------CCCCCCC
Confidence            799999999998887    44566676666   5668899999999988877765321     1         2221111


Q ss_pred             eEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchH
Q 021467          183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE  242 (312)
Q Consensus       183 ~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~  242 (312)
                      .+                .|.|+  ++   .+-.+.+..+|+++|++.|+++++...+.+
T Consensus       132 ~l----------------Py~WY--dT---PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~  170 (193)
T PF07021_consen  132 AL----------------PYEWY--DT---PNIHLCTIKDFEDLCRELGIRIEERVFLDG  170 (193)
T ss_pred             CC----------------CCccc--CC---CCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence            11                24442  21   244688999999999999999999887753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PLN02244 tocopherol O-methyltransferase

Probab=99.74  E-value=1.4e-16  Score=148.66  Aligned_cols=109  Identities=22%  Similarity=0.239  Sum_probs=92.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.+..+...++.|+++|+.+.++      ++++||+|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V  190 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV  190 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence            467899999999998888777654569999999999999999988776554568999999988766      57899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++..++||+    .+...+++++.++|||||.|+++...
T Consensus       191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            999988873    34678999999999999999987543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.74  E-value=2.9e-18  Score=148.35  Aligned_cols=171  Identities=20%  Similarity=0.260  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      |++...-.++--++.+|||+|||-|..+..+++.+ .+|+|+|+|+.+|+.|+.+....+.  .+++.+..+.+...   
T Consensus        47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~---  120 (243)
T COG2227          47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS---  120 (243)
T ss_pred             hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh---
Confidence            33333333333478999999999996666666656 6999999999999999999887662  13344443322111   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC  178 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~  178 (312)
                         ..++||+|+|.-+++|    .++.+.+++++.+++||||.++.+++|.......+- .+                  
T Consensus       121 ---~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~-i~------------------  174 (243)
T COG2227         121 ---AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA-II------------------  174 (243)
T ss_pred             ---cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH-HH------------------
Confidence               3379999999997766    566888999999999999999999999644332221 11                  


Q ss_pred             ccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467          179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (312)
Q Consensus       179 ~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~  241 (312)
                                          |.+|.+.+--.......-++.++++...+.+.|+++.....+.
T Consensus       175 --------------------~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~  217 (243)
T COG2227         175 --------------------GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT  217 (243)
T ss_pred             --------------------HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence                                0111000000011112347889999999999999999887764

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=1.8e-16  Score=143.19  Aligned_cols=174  Identities=20%  Similarity=0.212  Sum_probs=118.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++++.+|||||||.|+.+..+++....+|+|+.+|++..+.|+++.+..+...++++..+|..+  +       +.+||.
T Consensus        60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD~  130 (273)
T PF02353_consen   60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFDR  130 (273)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SE
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCCE
Confidence            5689999999999999998888774559999999999999999999988776678898888644  2       359999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f  188 (312)
                      |++..++.+  ........+++++.++|||||.+++.+.....-.....        ..                     
T Consensus       131 IvSi~~~Eh--vg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~--------~~---------------------  179 (273)
T PF02353_consen  131 IVSIEMFEH--VGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE--------RR---------------------  179 (273)
T ss_dssp             EEEESEGGG--TCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC--------TT---------------------
T ss_pred             EEEEechhh--cChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh--------cC---------------------
Confidence            999997776  23467889999999999999999876333311110000        00                     


Q ss_pred             cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (312)
Q Consensus       189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~  255 (312)
                           .-..|-.+|.|        +..++.+.+.+...+++.||++....++...|......|...+
T Consensus       180 -----~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f  233 (273)
T PF02353_consen  180 -----SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENF  233 (273)
T ss_dssp             -----CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHH
T ss_pred             -----CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHH
Confidence                 00023334444        1225778889999999999999999999999998776666544

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.71  E-value=1.8e-16  Score=141.69  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=92.4

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      ++.....++.+|||+|||+|..+..++.   .+..+++|+|+|+.|++.|+++....+...+++++++|+.+.++     
T Consensus        49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----  123 (247)
T PRK15451         49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----  123 (247)
T ss_pred             HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence            4455566889999999999987776665   24569999999999999999999765544468999999876543     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                         ..+|+|++.+++|+  .+.++...+++++.++|||||.|+++
T Consensus       124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~  163 (247)
T PRK15451        124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  163 (247)
T ss_pred             ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               45999999999998  44666789999999999999999987

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.69  E-value=2.7e-16  Score=130.09  Aligned_cols=108  Identities=23%  Similarity=0.322  Sum_probs=89.5

Q ss_pred             CCCEEEEECCCCCccHHHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~-~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+.+|||+|||+|..+..++. . +..+++|+|+|++|++.|+++.+..+.. +++|+++|+.+.+-  .+  + +.||+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D~   76 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFDI   76 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCeeE
Confidence            568999999999999988884 2 4579999999999999999998876644 69999999988431  00  2 78999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+    ..+...+++++.++|++||.+++..+.
T Consensus        77 I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   77 IISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999998887    345678899999999999999999777

...

>TIGR00740 methyltransferase, putative

Probab=99.69  E-value=7.6e-16  Score=136.91  Aligned_cols=113  Identities=21%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      +...+..++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|+++.+..+...++.++++|+...++     
T Consensus        46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  120 (239)
T TIGR00740        46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----  120 (239)
T ss_pred             HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence            44555667889999999999877777653   4568999999999999999998765444458999999977554     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                         ..+|+|++.+++|+  .+.++...+++++.++|+|||.++++.
T Consensus       121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence               45899999999998  456678899999999999999999883

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.69  E-value=2.1e-16  Score=130.98  Aligned_cols=100  Identities=26%  Similarity=0.421  Sum_probs=78.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||.|..+..+...+. +++|+|+|+.+++.      ..     ......+......      ++++||+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~-----~~~~~~~~~~~~~------~~~~fD~   81 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN-----VVFDNFDAQDPPF------PDGSFDL   81 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT-----SEEEEEECHTHHC------HSSSEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh-----hhhhhhhhhhhhc------cccchhh
Confidence            35789999999999988888866655 99999999999987      11     2222222222112      4689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |+|..++||    ..+...+|+++.++|||||++++++|+..
T Consensus        82 i~~~~~l~~----~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   82 IICNDVLEH----LPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             EEEESSGGG----SSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             HhhHHHHhh----cccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            999999998    23589999999999999999999999864

...

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.69  E-value=8.1e-16  Score=145.49  Aligned_cols=194  Identities=19%  Similarity=0.181  Sum_probs=131.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.++.+|||||||+|+.+..++.....+|+|+|+|+++++.|+++.+..    .+++...|...         .+++||+
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~---------l~~~fD~  231 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD---------LNGQFDR  231 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh---------cCCCCCE
Confidence            4578899999999998887777654569999999999999999988532    37777777643         1368999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f  188 (312)
                      |++..++++  ........+++.+.++|||||++++........             .                      
T Consensus       232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-------------~----------------------  274 (383)
T PRK11705        232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-------------D----------------------  274 (383)
T ss_pred             EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-------------C----------------------
Confidence            999988887  345667889999999999999999875432110             0                      


Q ss_pred             cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 021467          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR  268 (312)
Q Consensus       189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (312)
                          .....|-.+|.|        ...++.+.+.+.+.++ .||++....+|...|......|...++.....+....|.
T Consensus       275 ----~~~~~~i~~yif--------p~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~  341 (383)
T PRK11705        275 ----TNVDPWINKYIF--------PNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSE  341 (383)
T ss_pred             ----CCCCCCceeeec--------CCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence                000123344554        1124567777777655 699999999999999887666654433211111111222


Q ss_pred             CChhHHHHhhhheeeEE
Q 021467          269 LLPRSYDVLGLYSTFIF  285 (312)
Q Consensus       269 l~~~e~e~~~ly~~f~F  285 (312)
                      --.+.|+..-.|+.-.|
T Consensus       342 ~~~r~w~~yl~~~~~~F  358 (383)
T PRK11705        342 RFYRMWRYYLLSCAGAF  358 (383)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            23456776665554333

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.68  E-value=2.2e-16  Score=139.43  Aligned_cols=107  Identities=18%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|..+..++..  +..+|+|+|+|+++++.|+++.+..+. .+++++++|+...++      ++++||
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD  116 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF------DDNSFD  116 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC------CCCCcc
Confidence            46789999999999877777654  345999999999999999998865443 358899999877655      467999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|++.+++|+.    ++...+++++.++|+|||.+++..+
T Consensus       117 ~V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       117 YVTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EEEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            99999988872    3456789999999999999998643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK05785 hypothetical protein; Provisional

Probab=99.68  E-value=2.1e-16  Score=139.34  Aligned_cols=160  Identities=11%  Similarity=0.065  Sum_probs=106.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..+......+|+|+|+|++|++.|+++.         .++++|+...++      ++++||+
T Consensus        49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~  113 (226)
T PRK05785         49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV  113 (226)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence            3457899999999997777666553359999999999999998652         356888877766      6799999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecChh---HHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSS---TIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~~---~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y  184 (312)
                      |++.+++|+    ..+.+.+++++.++|||.+ .+-+..|+..   .++..|.+.+.+....       .++..      
T Consensus       114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~-------~~~~~------  176 (226)
T PRK05785        114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIAC-------LAGAK------  176 (226)
T ss_pred             EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHH-------HhcCC------
Confidence            999999987    3457789999999999954 3333355542   2333333333222111       11110      


Q ss_pred             EEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       185 ~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                                    -..|.| |.+++..    +.+.+.+.++++++| ..+...++
T Consensus       177 --------------~~~Y~y-l~~si~~----f~~~~~~~~~~~~~~-~~~~~~~~  212 (226)
T PRK05785        177 --------------CRDYKY-IYYIYER----LPTNSFHREIFEKYA-DIKVYEER  212 (226)
T ss_pred             --------------hHHHHH-HHHHHHH----CCCHHHHHHHHHHHh-CceEEEEc
Confidence                          012444 5565543    558899999999975 54555443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.68  E-value=7.6e-16  Score=135.41  Aligned_cols=150  Identities=19%  Similarity=0.199  Sum_probs=114.3

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++.+..+...++.++..|+...++       .++||+|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence            37999999999888877765 3468999999999999999998876655568999999866543       358999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEeccc
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~  191 (312)
                      ..++|+.    .+...+++++.++|||||++++..+..+..                       ..          .   
T Consensus        74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------------~~----------~---  113 (224)
T smart00828       74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL-----------------------SA----------I---  113 (224)
T ss_pred             HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC-----------------------cc----------c---
Confidence            9988873    346789999999999999999875432100                       00          0   


Q ss_pred             CCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHh
Q 021467          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD  246 (312)
Q Consensus       192 ~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~  246 (312)
                             +.       +   ....|+.+.+.+.+++++.||+++...++..-|..
T Consensus       114 -------~~-------~---~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~  151 (224)
T smart00828      114 -------EH-------E---ETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN  151 (224)
T ss_pred             -------cc-------c---ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence                   00       0   00124567888999999999999999888777755

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.67  E-value=2.6e-16  Score=121.15  Aligned_cols=96  Identities=27%  Similarity=0.472  Sum_probs=78.3

Q ss_pred             EEEECCCCCccHHHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        35 VLDlGCG~G~~l~~~~~~~----~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      |||+|||+|..+..+....    ..+++|+|+|++|++.|+++....+.  +++++++|+.+.+.      ..++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence            7999999999888777652    26999999999999999999876432  58999999977543      568999999


Q ss_pred             eccc-hhhhcCCHHHHHHHHHHHHhccCCCc
Q 021467          111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG  140 (312)
Q Consensus       111 ~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG  140 (312)
                      |... +||  .+.++++.+++++.++|||||
T Consensus        73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHH--LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred             EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence            9555 898  679999999999999999998

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.66  E-value=1.4e-15  Score=131.40  Aligned_cols=104  Identities=18%  Similarity=0.133  Sum_probs=86.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..+++.+ .+|+|+|+|++|++.|+++....+. ..+++.++|+.+.++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~  100 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL  100 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence            56899999999998887777654 5999999999999999998876543 237788888866543       36799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |..++|+  .+.+....+++++.++|||||++++.
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207        101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            9999987  56778899999999999999997654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.65  E-value=3.9e-15  Score=137.82  Aligned_cols=105  Identities=19%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++..+...|+|+|+|+.++.+++......+...++.++.+|+...++       +++||+|+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~  194 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF  194 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence            57899999999998888887777778999999999998765543322212348899998866543       47899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |..++||    ..+...++++++++|+|||.+++.+
T Consensus       195 s~~vl~H----~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        195 SMGVLYH----RRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ECChhhc----cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999887    3446789999999999999999874

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.64  E-value=1.6e-15  Score=125.24  Aligned_cols=140  Identities=20%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             hHHhHHHHHHHHHHHHhcCCCC-EEEEECCCCCccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467           12 THHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D   89 (312)
                      ...++..|.+...-..-+.+.+ +|||||||+|..+..+++.+.. .++|+|.|+.+++.|+...+..+....++|.+.|
T Consensus        47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D  126 (227)
T KOG1271|consen   47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD  126 (227)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence            3456667766443311133333 9999999999999999887654 4999999999999999988877666669999999


Q ss_pred             CCCCchhhhhhhcCCceeEEEeccchhhh----cCCHHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHHH
Q 021467           90 PCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (312)
Q Consensus        90 ~~~~~~~~~~~~~~~~fD~V~~~~~lh~~----~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~~  157 (312)
                      +.+..+      ..++||+|.--..+..+    -.....+...+..+.+.|+|||+|+++..|.  +++.+.+.
T Consensus       127 I~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~  194 (227)
T KOG1271|consen  127 ITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE  194 (227)
T ss_pred             ccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence            998655      34556665543322111    0112334667899999999999999998887  56665553

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.63  E-value=1.4e-14  Score=141.39  Aligned_cols=158  Identities=21%  Similarity=0.249  Sum_probs=114.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++.....+++|+|+|+++++.|+++....  ..++.|.++|+...++      ++++||+|
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~------~~~~fD~I  336 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY------PDNSFDVI  336 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC------CCCCEEEE
Confidence            467899999999998877776654568999999999999998876533  2358999999987665      56789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~  189 (312)
                      +|..+++|.    .+...+++++.++|||||.++++.+.....               .       ..            
T Consensus       337 ~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------------~-------~~------------  378 (475)
T PLN02336        337 YSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPG---------------T-------PS------------  378 (475)
T ss_pred             EECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCC---------------C-------Cc------------
Confidence            999988873    346789999999999999999885432100               0       00            


Q ss_pred             ccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhh
Q 021467          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN  247 (312)
Q Consensus       190 ~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~  247 (312)
                            +.+ ..|   +...    .-.+.+.+.+.++++++||+.+...++.+-|...
T Consensus       379 ------~~~-~~~---~~~~----g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~  422 (475)
T PLN02336        379 ------PEF-AEY---IKQR----GYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQV  422 (475)
T ss_pred             ------HHH-HHH---HHhc----CCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHH
Confidence                  000 000   0000    0124467889999999999999888877776554

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.63  E-value=3.3e-15  Score=133.73  Aligned_cols=114  Identities=18%  Similarity=0.266  Sum_probs=89.7

Q ss_pred             HHHHHHhcC-CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           22 TALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        22 ~~li~~~~~-~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      ..+++.+.. +..+|||+|||+|..+..+... ..+++|+|+|+.|++.|+++...      ..++++|+...++     
T Consensus        32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~-----   99 (251)
T PRK10258         32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPL-----   99 (251)
T ss_pred             HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcC-----
Confidence            334443332 4679999999999777766554 46999999999999999887532      4578899877665     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                       ++++||+|++..++|+    ..+...++.++.++|||||.++++++....+
T Consensus       100 -~~~~fD~V~s~~~l~~----~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~  146 (251)
T PRK10258        100 -ATATFDLAWSNLAVQW----CGNLSTALRELYRVVRPGGVVAFTTLVQGSL  146 (251)
T ss_pred             -CCCcEEEEEECchhhh----cCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence             5678999999999887    3347789999999999999999998776543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.63  E-value=5.5e-15  Score=127.48  Aligned_cols=103  Identities=18%  Similarity=0.179  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.++++....+.  ++.+.++|+...++       +++||+|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~   99 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF   99 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence            45799999999998888777655 5999999999999999988876553  36677777754333       35799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +..++|+  .+.+....+++++.++|||||++++.
T Consensus       100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            9999887  45677889999999999999996654

Part of a tellurite-reducing operon tehA and tehB

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.61  E-value=5.1e-14  Score=123.53  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++....+...++.+.++|+...         .++||+|+
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii  124 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV  124 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence            57899999999998887776654 589999999999999999987654333588999997652         26899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~  144 (312)
                      +..++++  .+.+....+++++.+++++++++.+
T Consensus       125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            9988877  3456788899999999987655554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.60  E-value=1.2e-14  Score=134.55  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||||||+|..+..+++. +..+|+|+|+|++|++.|+++....+    ++++.+|+.+.++      ++++||+
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~----i~~i~gD~e~lp~------~~~sFDv  181 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIIEGDAEDLPF------PTDYADR  181 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC----CeEEeccHHhCCC------CCCceeE
Confidence            36789999999999877766554 44689999999999999998865332    7789999877665      5678999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++..++|+ +.   +....++++.++|||||.++++.+
T Consensus       182 VIs~~~L~~-~~---d~~~~L~e~~rvLkPGG~LvIi~~  216 (340)
T PLN02490        182 YVSAGSIEY-WP---DPQRGIKEAYRVLKIGGKACLIGP  216 (340)
T ss_pred             EEEcChhhh-CC---CHHHHHHHHHHhcCCCcEEEEEEe
Confidence            999998887 22   345789999999999999987643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.60  E-value=4.9e-15  Score=133.02  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=85.0

Q ss_pred             HHHHHhc-CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        23 ~li~~~~-~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      .++..+. .++.+|||||||+|..+..+... +..+|+|+|+|+.|++.|+++    +    ++++++|+.+..      
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~------   85 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----VDARTGDVRDWK------   85 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----CcEEEcChhhCC------
Confidence            3444443 36789999999999877776655 346899999999999999764    2    678899986532      


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                       .+++||+|+|..++|++    .+...+++++.++|||||.+++++++
T Consensus        86 -~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         86 -PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             -CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence             34789999999999983    24678899999999999999998765

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.59  E-value=3.3e-14  Score=121.54  Aligned_cols=115  Identities=19%  Similarity=0.117  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      .++.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|++|++.|+++.+..+.. .++++++|+.+... 
T Consensus        32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-  109 (187)
T PRK00107         32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-  109 (187)
T ss_pred             HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence            44556666777777899999999999777766653 5579999999999999999998887643 38999999866332 


Q ss_pred             hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                            .++||+|+|... .       ....+++.+.++|||||++++..+.
T Consensus       110 ------~~~fDlV~~~~~-~-------~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        110 ------EEKFDVVTSRAV-A-------SLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             ------CCCccEEEEccc-c-------CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence                  468999998652 2       2577899999999999999988544

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.59  E-value=6.8e-15  Score=132.19  Aligned_cols=103  Identities=29%  Similarity=0.376  Sum_probs=84.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++...      +.++.+|+....       ...+||+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~------~~~~~~d~~~~~-------~~~~fD~   96 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD------CQFVEADIASWQ-------PPQALDL   96 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC------CeEEECchhccC-------CCCCccE
Confidence            46789999999999877777654 456999999999999999987632      778899986532       2468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++|++    .+...+++++.++|||||.+++++|+.
T Consensus        97 v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~  133 (258)
T PRK01683         97 IFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN  133 (258)
T ss_pred             EEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence            9999999983    236789999999999999999987764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=3.2e-16  Score=120.02  Aligned_cols=98  Identities=27%  Similarity=0.327  Sum_probs=62.5

Q ss_pred             EEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 021467           36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (312)
Q Consensus        36 LDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~  114 (312)
                      ||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....... .......+..+....    ...++||+|++..+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDY----DPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C----CC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhc----ccccccceehhhhh
Confidence            79999999888888766 5669999999999999999998775421 122333332221110    01259999999999


Q ss_pred             hhhhcCCHHHHHHHHHHHHhccCCCcEE
Q 021467          115 LQMCFETEERARRLLQNVSSLLKPGGYF  142 (312)
Q Consensus       115 lh~~~~~~~~~~~~l~~i~~~LkpGG~~  142 (312)
                      +||+    ++.+.++++++++|||||.|
T Consensus        76 l~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   76 LHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            9994    67889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.59  E-value=5.9e-15  Score=128.81  Aligned_cols=120  Identities=22%  Similarity=0.308  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHh--cCCC------CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----CCceEE
Q 021467           18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE   84 (312)
Q Consensus        18 n~vk~~li~~~--~~~~------~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~-----~~~~~~   84 (312)
                      .||...+..+.  ..|+      .+|||+|||.|-....+++.+ +.|+|||+++.||+.|++.....+     ..++++
T Consensus        68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~  146 (282)
T KOG1270|consen   68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE  146 (282)
T ss_pred             hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence            34555555554  2233      789999999997777777666 599999999999999999844322     234566


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus        85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      +.+.|+...         .+.||+|+|..+++|    ..++..++..+.++|||||.+++++.+...
T Consensus       147 ~~~~~~E~~---------~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  147 YEDTDVEGL---------TGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             hhhcchhhc---------ccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            766666552         356999999998887    777999999999999999999999888643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.59  E-value=1.7e-14  Score=131.69  Aligned_cols=104  Identities=17%  Similarity=0.193  Sum_probs=86.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++.+..+.  ++++...|+....+       +++||+|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~  189 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL  189 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence            34599999999998888877665 5999999999999999998876553  47788888766433       47899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..++|+  .+.++...+++++.++|+|||++++..
T Consensus       190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999987  567788999999999999999977653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.58  E-value=2.7e-14  Score=123.91  Aligned_cols=100  Identities=14%  Similarity=0.165  Sum_probs=81.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++++.+|||+|||+|..+..+... +..+++|+|+|++|++.|+++...      +.+.++|+.+ ++      ++++||
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~------~~~~~~d~~~-~~------~~~sfD  107 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN------INIIQGSLFD-PF------KDNFFD  107 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC------CcEEEeeccC-CC------CCCCEE
Confidence            456789999999999877777665 457999999999999999887532      5678888876 44      568999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|++..++||  .+.+.+..+++++.+++  ++++++.
T Consensus       108 ~V~~~~vL~h--l~p~~~~~~l~el~r~~--~~~v~i~  141 (204)
T TIGR03587       108 LVLTKGVLIH--INPDNLPTAYRELYRCS--NRYILIA  141 (204)
T ss_pred             EEEECChhhh--CCHHHHHHHHHHHHhhc--CcEEEEE
Confidence            9999999988  46788899999999998  4566665

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00452 methyltransferase, putative

Probab=99.57  E-value=2.4e-14  Score=131.54  Aligned_cols=106  Identities=15%  Similarity=0.019  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+...|+|+|+|+.|+.+++..-+......++.+..+|+.+.+.       ..+||+|+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~  193 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF  193 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence            67899999999998877777777678999999999998764432211111236777777655432       35899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |..+++|    ..+...+|++++++|||||.|++.+.
T Consensus       194 s~gvL~H----~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       194 SMGVLYH----RKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             Ecchhhc----cCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence            9998887    34567899999999999999998753

Known examples to date are restricted to the proteobacteria.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.57  E-value=3.1e-14  Score=128.33  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=90.9

Q ss_pred             hHHhHHHHHHHHHHHHh-cCCCCEEEEECCCCCccHH----HHHHc------CCCeEEEEeCChHHHHHHHHHHHh----
Q 021467           12 THHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVD----KWETA------LIANYIGIDVATSGIGEARDTWEN----   76 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~----~~~~~------~~~~v~giDis~~~i~~a~~r~~~----   76 (312)
                      ....+.+.+...++... ..++.+|||+|||+|....    .+...      ...+|+|+|+|+.||+.|++..-.    
T Consensus        79 ~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~  158 (264)
T smart00138       79 HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPEREL  158 (264)
T ss_pred             HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHH
Confidence            34445555555555432 2245799999999996322    22221      135899999999999999985310    


Q ss_pred             --c------------C--------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHh
Q 021467           77 --Q------------R--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS  134 (312)
Q Consensus        77 --~------------~--------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~  134 (312)
                        .            +        ....+.|.++|+.+.++      +.++||+|+|.+++||  .+.+....+++++++
T Consensus       159 ~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~  230 (264)
T smart00138      159 EDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAE  230 (264)
T ss_pred             hcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHH
Confidence              0            0        01247899999988654      4689999999999998  467788899999999


Q ss_pred             ccCCCcEEEEE
Q 021467          135 LLKPGGYFLGI  145 (312)
Q Consensus       135 ~LkpGG~~i~~  145 (312)
                      +|+|||++++.
T Consensus       231 ~L~pGG~L~lg  241 (264)
T smart00138      231 ALKPGGYLFLG  241 (264)
T ss_pred             HhCCCeEEEEE
Confidence            99999999976

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.56  E-value=3.6e-14  Score=119.61  Aligned_cols=102  Identities=23%  Similarity=0.286  Sum_probs=86.1

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE-EEEcCCCCCc-hhhhhhhcCCceeEEE
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC  110 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~-f~~~D~~~~~-~~~~~~~~~~~fD~V~  110 (312)
                      ..||++|||+|.....+--.+..+|+++|+++.|-+.|.++++++.. .++. |++++..+.+ +      .++++|.|+
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l------~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQL------ADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCccc------ccCCeeeEE
Confidence            46799999999776665445778999999999999999999887643 3344 9999988765 4      579999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |.+    ++.|.+++.+.|+++.++|||||++++.
T Consensus       151 ~Tl----vLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  151 CTL----VLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             EEE----EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999    4566888999999999999999999988

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.56  E-value=2.8e-14  Score=121.63  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=84.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +..++||||||.|+++..++..+. .|+++|+|+.+++.+++..+..+  .+++..+.|+.+..+       ++.||+|+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l~i~~~~~Dl~~~~~-------~~~yD~I~   99 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--LDIRTRVADLNDFDF-------PEEYDFIV   99 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--ceeEEEEecchhccc-------cCCcCEEE
Confidence            568999999999999999988777 89999999999999988776654  348888999877655       36899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +..++++  ...+....+++++.+.++|||++++.
T Consensus       100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen  100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence            9888877  66788899999999999999998875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03438 probable methyltransferase

Probab=99.56  E-value=4.5e-13  Score=123.13  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~~~~  105 (312)
                      ++++.+|||+|||+|..+..++...  ..+|+|+|+|++||+.|+++........++.++++|+.+. ++....  ....
T Consensus        61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~  138 (301)
T TIGR03438        61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR  138 (301)
T ss_pred             hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence            3467899999999998888777663  4689999999999999999876543345678899998763 221100  0113


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..++++..++++  .+.++...+|++++++|+|||.|++.
T Consensus       139 ~~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig  176 (301)
T TIGR03438       139 RLGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG  176 (301)
T ss_pred             eEEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            344555566776  45888999999999999999999876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.55  E-value=4.7e-14  Score=127.85  Aligned_cols=101  Identities=19%  Similarity=0.330  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +..+|||+|||+|..+..+... +   ...++|+|+|+.|++.|+++..      .+.+.++|+.+.++      .+++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence            5578999999999877766543 1   2379999999999999987753      27789999887666      56899


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |+|++.++.           ..++++.++|||||+|++.+|....++.
T Consensus       153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e  189 (272)
T PRK11088        153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE  189 (272)
T ss_pred             eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence            999987642           2357899999999999999999877654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.55  E-value=1.9e-13  Score=116.36  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=80.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|.....++.. +..+|+|+|+|+.|++.++++.+..+.. +++++++|+.+..       ..++||+|
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-------~~~~fD~I  113 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-------HEEQFDVI  113 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-------ccCCccEE
Confidence            4789999999999776666544 3468999999999999999888766532 4899999987632       24789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++.. +++       ...+++.+.++|+|||.+++...
T Consensus       114 ~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       114 TSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             Eehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence            9866 554       56678889999999999998744

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.55  E-value=6.3e-14  Score=123.68  Aligned_cols=107  Identities=21%  Similarity=0.301  Sum_probs=88.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+.+|||+|||+|..+..++.. ...+++|+|+|+.+++.++++...     ++.++.+|+...++      ++++||+|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v  102 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI  102 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence            3478999999999877777665 345799999999999999988753     27789999887665      46789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      ++..++|+    ..+...+++++.++|+|||.+++..+....+
T Consensus       103 i~~~~l~~----~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~  141 (240)
T TIGR02072       103 VSNLALQW----CDDLSQALSELARVLKPGGLLAFSTFGPGTL  141 (240)
T ss_pred             EEhhhhhh----ccCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence            99999998    3346789999999999999999998777544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.54  E-value=2.1e-13  Score=115.10  Aligned_cols=111  Identities=19%  Similarity=0.206  Sum_probs=87.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||+|||+|.....+++... .+++++|+++.+++.|++..+.++... ++++..|+.+..       ++.+||+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence            678999999999977777766544 379999999999999999998877544 889999987632       35899999


Q ss_pred             EeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|+..+|.... .....+.+++...++|||||.+++.....
T Consensus       103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~  143 (170)
T PF05175_consen  103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH  143 (170)
T ss_dssp             EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence            99988776322 23467899999999999999998775544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.54  E-value=5.6e-14  Score=121.82  Aligned_cols=122  Identities=17%  Similarity=0.077  Sum_probs=89.9

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhhhcCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~-~~~~~~~~~~~~~~~  105 (312)
                      +..++.+|||+|||+|..+..++.. +..+|+|+|+|+++++.|+++....+. .++.++++|+ ...+  ..+  ++++
T Consensus        37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~~  111 (202)
T PRK00121         37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDGS  111 (202)
T ss_pred             cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Cccc
Confidence            3446789999999999888777654 446899999999999999998876543 3488999998 3322  011  3578


Q ss_pred             eeEEEeccchhhhc----CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          106 ADLVCCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       106 fD~V~~~~~lh~~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      ||+|++.+..++..    ........+++++.++|||||+|++++++...+..
T Consensus       112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~  164 (202)
T PRK00121        112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY  164 (202)
T ss_pred             cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence            99999987543211    00112477899999999999999999888765544

>PRK06202 hypothetical protein; Provisional

Probab=99.54  E-value=1.7e-13  Score=121.27  Aligned_cols=101  Identities=19%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~----~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++.+|||+|||+|..+..++..    + ..+|+|+|+|++|++.|+++....+    +.+.+.|+...+.      .+++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~------~~~~  129 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA------EGER  129 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc------cCCC
Confidence            5679999999999766655431    2 2489999999999999998865433    4555555544333      3578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|+|.+++||  .+.++...+++++.++++  |.+++.
T Consensus       130 fD~V~~~~~lhh--~~d~~~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        130 FDVVTSNHFLHH--LDDAEVVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             ccEEEECCeeec--CChHHHHHHHHHHHHhcC--eeEEEe
Confidence            999999999999  334557789999999998  444444

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.52  E-value=3.9e-13  Score=106.48  Aligned_cols=106  Identities=13%  Similarity=0.050  Sum_probs=82.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+.. +++++..|+.....     ....+||
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~D   90 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE-----DSLPEPD   90 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh-----hhcCCCC
Confidence            346789999999999988888765 3469999999999999999887765422 47888888653211     0236899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|++....+.       ...+++++.+.|+|||.|++++.
T Consensus        91 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        91 RVFIGGSGGL-------LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             EEEECCcchh-------HHHHHHHHHHHcCCCCEEEEEec
Confidence            9998764433       56899999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.52  E-value=2.1e-13  Score=119.02  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=84.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      +++.+|||+|||.|.++..++.++. +|+|+|+|+.+++.+.+.....           ....+++++++|+.+.+..  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~--  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA--  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence            4678999999999999998877655 8999999999999864422110           0123488999999875431  


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                         ..++||.|+...++|+  ...+.....++.+.++|||||++++.
T Consensus       110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence               1357999998888776  46888899999999999999986655

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.52  E-value=1.2e-12  Score=120.42  Aligned_cols=105  Identities=21%  Similarity=0.296  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++.+|||+|||+|..+..+...+ .+|+|+|+|+.|++.|+++.+...    ....+.|.+.|+..         .+++|
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---------l~~~f  213 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---------LSGKY  213 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---------cCCCc
Confidence            56899999999998777777654 589999999999999999986531    11247788888643         24789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|+|..+++|  ...+....+++.+.+ +.+||.++...|.
T Consensus       214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~  252 (315)
T PLN02585        214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK  252 (315)
T ss_pred             CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence            99999999776  334456677887775 4667766654454

>PRK06922 hypothetical protein; Provisional

Probab=99.51  E-value=1.2e-13  Score=135.67  Aligned_cols=108  Identities=23%  Similarity=0.277  Sum_probs=87.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~--~~~~~~~~~~~fD  107 (312)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+  .++.++++|+.+.+  +      ++++||
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD  489 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD  489 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence            5789999999999777766653 55699999999999999998875443  24778889987643  3      467899


Q ss_pred             EEEeccchhhhcC---------CHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~---------~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +|++..++|+++.         +......+++++.++|||||.+++.-
T Consensus       490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9999999997532         34678999999999999999999873

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.51  E-value=1.1e-13  Score=125.47  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|..+..++..  ...+|+|+|+|+.|++.|+++....+. .++.+..+|+...++      ++++||
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~------~~~~fD  148 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPV------ADNSVD  148 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCC------CCCcee
Confidence            47889999999999766554443  234799999999999999998766543 247899999877555      467999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|++..++|+.    .+...+++++.++|||||+++++
T Consensus       149 ~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        149 VIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             EEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence            99999988872    33567899999999999999987

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.51  E-value=1.1e-13  Score=116.96  Aligned_cols=105  Identities=19%  Similarity=0.296  Sum_probs=82.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ...++||+|||.|..+..++.. ..+++++|+|+.+|+.|++|.....   .++++++|+....       +.++||+|+
T Consensus        43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV  111 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV  111 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred             ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence            4478999999999877777554 4699999999999999999998754   3999999996643       468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +..+++| +.+.++++.++.++...|+|||.+++...
T Consensus       112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999998 55678899999999999999999997744

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.51  E-value=1.7e-12  Score=114.31  Aligned_cols=99  Identities=20%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++....+...++.+..+|+..         .+++||+|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v  131 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV  131 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence            3678999999999988887776654 7999999999999999998765433358888888422         34789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCc
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG  140 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG  140 (312)
                      ++..++|+  .+.+....+++++.+.+++++
T Consensus       132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence            99999876  346678889999998775444

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.50  E-value=6.4e-13  Score=117.53  Aligned_cols=107  Identities=22%  Similarity=0.276  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++....+.  .+.+...|......     ...++||+|+
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~Ii  119 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVVT  119 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEEE
Confidence            67899999999998777666654 5899999999999999988765432  36677776654321     1347899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +..++++    ..+...+++++.+.|+|||.++++.++.
T Consensus       120 ~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        120 CMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             EhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            9987776    3346788999999999999999987764

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.50  E-value=2.9e-13  Score=119.60  Aligned_cols=105  Identities=25%  Similarity=0.316  Sum_probs=86.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|..+..++...  ..+++|+|+++.+++.|+++....+...++.++.+|+....+      ..++||+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~  124 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA  124 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence            57899999999998888777664  379999999999999999988654333458899999877554      4578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++..++|+    ..+...+++++.++|+|||.+++.
T Consensus       125 I~~~~~l~~----~~~~~~~l~~~~~~L~~gG~li~~  157 (239)
T PRK00216        125 VTIAFGLRN----VPDIDKALREMYRVLKPGGRLVIL  157 (239)
T ss_pred             EEEeccccc----CCCHHHHHHHHHHhccCCcEEEEE
Confidence            999988887    334678899999999999999876

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.49  E-value=5.8e-13  Score=121.65  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++..+..++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.|+++...++....+.+...|...  .      ..
T Consensus       152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~------~~  223 (288)
T TIGR00406       152 WLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P------IE  223 (288)
T ss_pred             HHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c------cC
Confidence            345556678999999999998777766666679999999999999999998876654445666655221  1      34


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++||+|+++...+.       ...++.++.++|||||+++++..-.
T Consensus       224 ~~fDlVvan~~~~~-------l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       224 GKADVIVANILAEV-------IKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             CCceEEEEecCHHH-------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            68999999775443       5788999999999999999986544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.49  E-value=5e-13  Score=120.93  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=87.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~-~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +..+|+|||||.|+....++.+   +..+++|+|+++++++.|++.+.. .+...+++|.++|+.+...      ..+.|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence            6689999999999765555432   456899999999999999999854 4445569999999977422      23689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+|+|. ++||  .+.++...+++++++.|+|||.+++-..
T Consensus       197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            999999 8998  4457788999999999999999998753

>PRK08317 hypothetical protein; Provisional

Probab=99.48  E-value=5.5e-13  Score=117.52  Aligned_cols=109  Identities=25%  Similarity=0.312  Sum_probs=87.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++....  ...+.+..+|+...++      .+++|
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~   88 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF   88 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence            347789999999999888777654  3468999999999999999883322  2348889999877555      45789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|++..++++    ..+...+++++.++|||||.+++..++.
T Consensus        89 D~v~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~  127 (241)
T PRK08317         89 DAVRSDRVLQH----LEDPARALAEIARVLRPGGRVVVLDTDW  127 (241)
T ss_pred             eEEEEechhhc----cCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            99999998877    3347788999999999999999887653

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.48  E-value=1.6e-12  Score=114.12  Aligned_cols=109  Identities=23%  Similarity=0.282  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|||+|||+|..+..++... .+++|+|+++.+++.++++....+. .++.+.+.|+......     ..++||+|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-----~~~~~D~i~  117 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-----GAKSFDVVT  117 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-----CCCCccEEE
Confidence            47899999999998777766654 4799999999999999998875432 1377778876543321     137899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +...+|+    ..+...+++++.++|+|||.+++..++..
T Consensus       118 ~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~  153 (224)
T TIGR01983       118 CMEVLEH----VPDPQAFIRACAQLLKPGGILFFSTINRT  153 (224)
T ss_pred             ehhHHHh----CCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            9998887    34567899999999999999998877653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.48  E-value=1e-12  Score=121.12  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++.+..+...+++++.+|+.+.++        ..+|+
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~  218 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA  218 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence            35689999999999888877766 4468999998 78999999998877655679999999876544        23699


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++...+|+  .+.+....+++++.++|+|||++++.
T Consensus       219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~  253 (306)
T TIGR02716       219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL  253 (306)
T ss_pred             EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999888887  45677789999999999999999987

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.48  E-value=9.6e-14  Score=109.27  Aligned_cols=113  Identities=22%  Similarity=0.214  Sum_probs=86.6

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      |.+|||+|||+|..+...++....+++|+|+++..++.|+.+....+...+++++++|..+..  ..+  .+++||+|++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~   76 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT   76 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence            468999999999888877776657999999999999999999988765556999999975532  111  4689999999


Q ss_pred             ccchhhhcCCH----HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       112 ~~~lh~~~~~~----~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +-..+......    .....+++.+.++|||||.+++.+|+
T Consensus        77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            87655321111    24578899999999999999998874

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.47  E-value=6.8e-13  Score=115.97  Aligned_cols=103  Identities=24%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|..+..++....  .+++|+|+++.+++.++++...   ..++.+..+|+.+.++      ..++||+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D~  109 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFDA  109 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEEE
Confidence            678999999999988888877644  4899999999999999988751   2247888999877554      4578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |++.+++|+    ..+...+++++.+.|+|||++++..
T Consensus       110 i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       110 VTIAFGLRN----VTDIQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence            999998876    3457789999999999999999763

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.47  E-value=8.5e-13  Score=113.65  Aligned_cols=159  Identities=15%  Similarity=0.157  Sum_probs=104.2

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhhhcC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~  103 (312)
                      ..+++++.+|||+|||+|..+..+.......++|+|+|+++++.|+++    +    ++++++|+...  ++      .+
T Consensus         8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~------~~   73 (194)
T TIGR02081         8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAF------PD   73 (194)
T ss_pred             HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhccccc------CC
Confidence            344567889999999999877776555555789999999999988652    2    56788887542  12      45


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~  183 (312)
                      ++||+|+|..++|++    .+...+++++.+.+   |..++++|+......+..-     ..++         ..     
T Consensus        74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~-----~~~~---------~~-----  127 (194)
T TIGR02081        74 KSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSI-----LTKG---------RM-----  127 (194)
T ss_pred             CCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHH-----HhCC---------cc-----
Confidence            789999999999883    34666777776654   5567778876544332211     0010         00     


Q ss_pred             EEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       184 y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                      .   .   ....     .|.+.  +.   .+..+.+.+.+.++++++||++++...+
T Consensus       128 ~---~---~~~~-----~~~~~--~~---~~~~~~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       128 P---V---TGEL-----PYDWY--NT---PNIHFCTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             c---c---CCCC-----Ccccc--CC---CCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence            0   0   0000     01110  10   1224668999999999999999998766

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.47  E-value=1.5e-12  Score=122.26  Aligned_cols=108  Identities=18%  Similarity=0.166  Sum_probs=85.5

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.+|||+|||+|.....++.. +..+|+++|+|+.+++.|+++++.++..  .+++++..|+.+. +      ...+||+
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl  301 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA  301 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence            469999999999877776655 4569999999999999999998765422  2578888887652 2      2468999


Q ss_pred             EEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|+..+|... .+.....++++.+.++|+|||.+++..
T Consensus       302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            99998877632 234557889999999999999999885

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.47  E-value=1.1e-12  Score=114.92  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=84.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~   97 (312)
                      ..++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.+.+.....           -...+++++++|+.+.... 
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~-  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA-  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence            34678999999999999998877655 8999999999999874321110           0123488899999876431 


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                          ..+.||+|....++|+  .+.+....+++.+.++|+|||++++.
T Consensus       113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence                1258999999888886  57888999999999999999975543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=1.3e-12  Score=111.04  Aligned_cols=108  Identities=14%  Similarity=0.098  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..+...+. +++|+|+|+++++.|+++...++.  .++++.+|+....        .++||+|+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~fD~Vi   87 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--------RGKFDVIL   87 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--------CCcccEEE
Confidence            557899999999988777776655 899999999999999999876542  4788889976532        35899999


Q ss_pred             eccchhhhcC-----------------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~-----------------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++..+|..-.                 .....+.+++++.++|+|||.+++..+..
T Consensus        88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~  143 (179)
T TIGR00537        88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL  143 (179)
T ss_pred             ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence            9877654211                 12235788999999999999998875443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.43  E-value=2.8e-12  Score=111.44  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=78.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|..+..++..  ...+|+|+|+++++++.|+++....+...+++++.+|......      ...+||
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~fD  144 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPFD  144 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCcc
Confidence            47789999999999877666553  2458999999999999999988766543458899999875332      346899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +|++..++++          +.+++.+.|+|||++++..
T Consensus       145 ~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        145 AIIVTAAAST----------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence            9999987654          1246778999999998764

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.43  E-value=8.3e-13  Score=113.77  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=87.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ....+|||||||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+....  .... +++++|.
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~   90 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK   90 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence            35679999999999888877765 4568999999999999999988765433 5899999986522  1110 3468999


Q ss_pred             EEeccchhhhcCCH-----HHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          109 VCCFQHLQMCFETE-----ERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       109 V~~~~~lh~~~~~~-----~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |++.+.-++ ....     -....+++.++++|||||.+++.+.+....
T Consensus        91 v~~~~pdpw-~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~  138 (194)
T TIGR00091        91 VFLNFPDPW-PKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF  138 (194)
T ss_pred             EEEECCCcC-CCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            998876443 1100     012578999999999999999988776543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.42  E-value=2.8e-13  Score=115.11  Aligned_cols=102  Identities=28%  Similarity=0.313  Sum_probs=86.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|.|||||+|.....+.+. +...++|+|.|++||+.|+.+..+      ++|..+|+....       +...+|++
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~-------p~~~~dll   96 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWK-------PEQPTDLL   96 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcC-------CCCccchh
Confidence            5679999999999777666655 778999999999999999888754      789999998754       46789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +++.++|+.    .+-..+|..+...|.|||.+-+..||.
T Consensus        97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106          97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence            999999983    445667888888999999999999987

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.42  E-value=3.1e-12  Score=119.27  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||+|||+|.....+.+. +..+++++|+|+.|++.|+++.+.++.  ..+++..|+...        ..++||+|
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlI  265 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMI  265 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEE
Confidence            3468999999999777766655 345899999999999999999887653  356777787542        24789999


Q ss_pred             EeccchhhhcCC-HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~-~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|+..+|+.... ....+.+++++.++|||||.+++....
T Consensus       266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            999999874433 566789999999999999999988544

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.41  E-value=7e-12  Score=107.27  Aligned_cols=102  Identities=11%  Similarity=0.040  Sum_probs=80.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .+++++++|+.. .+       .++||+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-------~~~~D~  100 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-------PGKADA  100 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-------CcCCCE
Confidence            47789999999999877777665 346899999999999999998876543 247888888632 22       357999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++....++       ...+++.+.++|+|||++++..+
T Consensus       101 v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287        101 IFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             EEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence            998775544       56688999999999999988754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.41  E-value=3.1e-12  Score=114.58  Aligned_cols=102  Identities=20%  Similarity=0.201  Sum_probs=76.2

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ....++.+|||+|||+|..+..+.+.+..+++|+|+|+.+++.|+++...++....+.+..              .+.+|
T Consensus       115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~--------------~~~~f  180 (250)
T PRK00517        115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ--------------GDLKA  180 (250)
T ss_pred             hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc--------------CCCCc
Confidence            3456789999999999977666655566679999999999999999987765321122111              12379


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|+++...+       ....+++.+.++|||||+++++....
T Consensus       181 D~Vvani~~~-------~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        181 DVIVANILAN-------PLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             CEEEEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            9999876433       36778999999999999999985443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=2.2e-12  Score=125.82  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++.. ..+++|+|+|++|++.+++....   ..++.++++|+....+.    .++++||+|+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~  108 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF  108 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence            5679999999999888877665 45899999999999987664322   12488999998643221    1457899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |.+++|+  .+.+....+++++.++|||||++++.
T Consensus       109 ~~~~l~~--l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        109 SNWLLMY--LSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             hhhhHHh--CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999998  45566889999999999999999886

>PRK14967 putative methyltransferase; Provisional

Probab=99.40  E-value=6.6e-12  Score=110.50  Aligned_cols=112  Identities=19%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+.  ++.++++|+... +      ++++||+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~  104 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV  104 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence            457789999999999877777665556999999999999999998876542  478888887652 2      3578999


Q ss_pred             EEeccchhhhc-----------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~-----------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+++...+...                 +.......+++.+.++|||||++++..++.
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99975432210                 112235778999999999999999875543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.39  E-value=1.1e-11  Score=107.03  Aligned_cols=120  Identities=12%  Similarity=0.042  Sum_probs=88.3

Q ss_pred             HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      +...+.+. ..++.+|||+|||+|..+..++..  +..+|+++|+++.+++.|+++.+..+...++.++.+|..+..   
T Consensus        29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l---  105 (198)
T PRK00377         29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL---  105 (198)
T ss_pred             HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH---
Confidence            34444433 347889999999999877776553  346899999999999999999877653345788888875421   


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                        +...+.||+|++....       .....+++.+.++|||||++++..+..+.+
T Consensus       106 --~~~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  151 (198)
T PRK00377        106 --FTINEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV  151 (198)
T ss_pred             --hhcCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence              1123689999986532       236778999999999999999877766544

>PRK04266 fibrillarin; Provisional

Probab=99.37  E-value=7.7e-12  Score=110.10  Aligned_cols=108  Identities=17%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.++.+|||+|||+|..+..++.. +...|+|+|+++.|++.+.++.+..   .++.++.+|+........   ...+||
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D  143 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVD  143 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCC
Confidence            348899999999999877777654 3358999999999999887776542   237888999875211011   135699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++..      ........+++++.++|||||.++++++-
T Consensus       144 ~i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~  178 (226)
T PRK04266        144 VIYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKA  178 (226)
T ss_pred             EEEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            998543      22334566799999999999999998553

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.37  E-value=3.7e-12  Score=115.88  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=81.6

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++.++..++.+|||+|||+|-.+...++.+..+|+|+|+++.+++.|+++...|+...++...  .  ..+.      .
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~  222 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V  222 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence            4556777889999999999997777767778889999999999999999999988755444432  1  1122      3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+||+|+++-..+-       +..++..+.++|+|||+++++
T Consensus       223 ~~~~dlvvANI~~~v-------L~~l~~~~~~~l~~~G~lIlS  258 (295)
T PF06325_consen  223 EGKFDLVVANILADV-------LLELAPDIASLLKPGGYLILS  258 (295)
T ss_dssp             CS-EEEEEEES-HHH-------HHHHHHHCHHHEEEEEEEEEE
T ss_pred             cccCCEEEECCCHHH-------HHHHHHHHHHhhCCCCEEEEc
Confidence            489999998775444       778899999999999999988

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=1.2e-11  Score=111.09  Aligned_cols=103  Identities=20%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH--HHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~--r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+.+|||||||+|..+..++.++...|+|+|.+....-+...  ++-...    .......+.-..+    + ..+.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~L----p-~~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDL----P-NLGAFDT  185 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhc----c-ccCCcCE
Confidence            688999999999999999999999999999999988877443  333211    1122222222222    1 1478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|..++-|    ..+.-..|+.+++.|+|||.+++-+
T Consensus       186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            999998766    5667888999999999999999763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.37  E-value=8.5e-13  Score=110.23  Aligned_cols=79  Identities=19%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             EEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhc
Q 021467           58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL  135 (312)
Q Consensus        58 ~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~  135 (312)
                      +|+|+|++||+.|+++.+...  ...+++++++|+.+.++      ++++||+|++.+++|+.    .+...++++++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv   70 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV   70 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence            489999999999988765321  12348999999988776      67899999999999983    4578999999999


Q ss_pred             cCCCcEEEEEe
Q 021467          136 LKPGGYFLGIT  146 (312)
Q Consensus       136 LkpGG~~i~~~  146 (312)
                      |||||.|++..
T Consensus        71 LkpGG~l~i~d   81 (160)
T PLN02232         71 LKPGSRVSILD   81 (160)
T ss_pred             cCcCeEEEEEE
Confidence            99999998773

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.36  E-value=3.9e-12  Score=112.04  Aligned_cols=134  Identities=17%  Similarity=0.131  Sum_probs=100.9

Q ss_pred             HHHHHHHHhcC--CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        20 vk~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      +-++|+..+++  ...+|||||||+|.....++.. ...+++|||+++++.+.|++..+.++...+++++++|+......
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            56788888876  4679999999999666666555 44799999999999999999999888788899999998764321


Q ss_pred             hhhhhcCCceeEEEeccchhhhc--------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHHH
Q 021467           97 TQMQEKANQADLVCCFQHLQMCF--------------ETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ  157 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~~--------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~~  157 (312)
                        .  ...+||+|+|+-...-.-              +..-..+.+++...++|||||.+.+..|..  ..+...++
T Consensus       111 --~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~  183 (248)
T COG4123         111 --L--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK  183 (248)
T ss_pred             --c--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence              1  235799999976532210              112335889999999999999999987665  23444443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.36  E-value=8.6e-12  Score=116.08  Aligned_cols=120  Identities=18%  Similarity=0.108  Sum_probs=91.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+++.+|||+|||+|+.+...... ..+++|+|+++.|++.|+.+.+..+... +.+.++|+.+.++      .+++||+
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~  251 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDA  251 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCE
Confidence            457889999999999887765544 4589999999999999999987765433 6888999987655      4578999


Q ss_pred             EEeccchhhh--c---CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          109 VCCFQHLQMC--F---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       109 V~~~~~lh~~--~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      |++.......  .   ...+....+++++.++|||||++++.+|+...+.+.+
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~  304 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA  304 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence            9996432110  0   1123468899999999999999999988875554433

This family is found exclusively in the Archaea.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=5.4e-12  Score=113.96  Aligned_cols=110  Identities=16%  Similarity=0.185  Sum_probs=82.9

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ..+.++..++.+|||+|||+|-.+...++.+..+++|+|+++.+++.|+++...|+....+.....+.....       .
T Consensus       154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~  226 (300)
T COG2264         154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------E  226 (300)
T ss_pred             HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------c
Confidence            345666778999999999999777777777888999999999999999999988763211111111111110       2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      .++||+|+++-.-+-       ...+...+.+.|||||+++.+.
T Consensus       227 ~~~~DvIVANILA~v-------l~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         227 NGPFDVIVANILAEV-------LVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             cCcccEEEehhhHHH-------HHHHHHHHHHHcCCCceEEEEe
Confidence            369999998874333       6788999999999999999984

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.35  E-value=1.3e-11  Score=108.09  Aligned_cols=113  Identities=11%  Similarity=0.005  Sum_probs=89.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      .++.+||+.|||+|.++..++..+. +|+|+|+|+.+|+.+.+.....           -....++++++|+++.+... 
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence            4678999999999999998887776 7999999999999986632100           01235899999998864310 


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                        ...+.||+|.-..+++.  ...+...+..+.+.++|+|||.+++.+.+
T Consensus       120 --~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~  165 (226)
T PRK13256        120 --NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME  165 (226)
T ss_pred             --cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence              02368999999888886  57888999999999999999999988543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.35  E-value=1.6e-11  Score=107.05  Aligned_cols=111  Identities=19%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      +.++.+|||||||+|..+..+++.  ....|+|+|+++ |.     ..      ..+.++++|+.+......+.  ...+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~------~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI------VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC------CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            467889999999999877766665  235899999998 21     11      12889999998754211110  1357


Q ss_pred             ceeEEEeccchhhhcCCH--H------HHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          105 QADLVCCFQHLQMCFETE--E------RARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~--~------~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      +||+|+|..+.++. .+.  +      ....+|+++.++|||||.|++.+...+.+
T Consensus       117 ~~D~V~S~~~~~~~-g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~  171 (209)
T PRK11188        117 KVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF  171 (209)
T ss_pred             CCCEEecCCCCccC-CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence            89999998766552 211  1      12578999999999999999976665443

>PRK14968 putative methyltransferase; Provisional

Probab=99.34  E-value=2.5e-11  Score=103.41  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=84.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~-~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+++++.++++...++...+ +.+.++|+.+. +      .+.+||+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~   93 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV   93 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence            46789999999999888877766 56999999999999999998876553322 77888887653 2      2358999


Q ss_pred             EEeccchhh-----------------hcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~-----------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++...+..                 ...+......+++++.++|||||.+++..++.
T Consensus        94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~  151 (188)
T PRK14968         94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL  151 (188)
T ss_pred             EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence            998654211                 11124456788999999999999999887654

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.34  E-value=7.3e-12  Score=108.25  Aligned_cols=160  Identities=19%  Similarity=0.247  Sum_probs=111.3

Q ss_pred             EEEEECCCCCccHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           34 TVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +||++|||.|..+..+++..   .-.++++|.|+.+|+..+++.....  .++.-.+.|++...+...+  ..+++|+|+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it  149 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT  149 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence            79999999999888887752   2489999999999999888754432  2355566777765532222  468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecc
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV  190 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~  190 (312)
                      +.|++-.  .+.++...+++|++++|||||.+++---....+-+ ++     +. +         +..+     +     
T Consensus       150 ~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-lR-----F~-~---------~~~i-----~-----  201 (264)
T KOG2361|consen  150 LIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-LR-----FK-K---------GQCI-----S-----  201 (264)
T ss_pred             EEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-Hh-----cc-C---------Ccee-----e-----
Confidence            9999865  77999999999999999999999987333322211 00     00 0         0000     0     


Q ss_pred             cCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEec
Q 021467          191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ  238 (312)
Q Consensus       191 ~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~  238 (312)
                                 -+|+..++.+  +-|..+-+.|..++.++||+.++..
T Consensus       202 -----------~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~~~  236 (264)
T KOG2361|consen  202 -----------ENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQLE  236 (264)
T ss_pred             -----------cceEEccCCc--eeeeccHHHHHHHHHhcccchhccc
Confidence                       1122223332  2377788999999999999988754

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.34  E-value=1.9e-11  Score=106.85  Aligned_cols=101  Identities=13%  Similarity=0.029  Sum_probs=78.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++..  ...+|+|+|+++++++.|+++++..+. .++.++++|......      ...+|
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f  146 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY  146 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence            357899999999999877666554  235999999999999999999876543 248999999876433      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++..+.+.          ..+.+.+.|||||++++..
T Consensus       147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence            99998876543          1235667899999998864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.34  E-value=1.9e-11  Score=106.95  Aligned_cols=102  Identities=12%  Similarity=0.016  Sum_probs=78.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+++++++.|+++++..+. .+++++++|......      ...+|
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f  147 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY  147 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence            3578899999999998877666542  24699999999999999999887653 348899999865322      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+|++..+.+.          ....+.+.|+|||++++...
T Consensus       148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEc
Confidence            99998875544          23557889999999998643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.31  E-value=7.7e-11  Score=107.43  Aligned_cols=113  Identities=18%  Similarity=0.204  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++...++.++++|+.+. +      +..+||+|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I  193 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI  193 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence            4579999999999887777665 44699999999999999999988766444689999998642 2      24579999


Q ss_pred             Eeccch-------------hh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHL-------------QM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~l-------------h~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +++-..             ++    ++    ...+..+.+++++.++|+|||.+++.+....
T Consensus       194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~  255 (284)
T TIGR03533       194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM  255 (284)
T ss_pred             EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence            986321             11    00    1123457889999999999999999877543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.31  E-value=2.4e-11  Score=104.08  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=78.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      +.++.+|||+|||+|+.+..+...  +..+++|+|+|+.+      .  ..    .+.++++|+.+......+.  .+.+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--~~----~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--IE----NVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--CC----CceEEEeeCCChhHHHHHHHHhCCC
Confidence            357899999999999877766654  34589999999864      1  11    2778889987644221111  1356


Q ss_pred             ceeEEEeccchhh----hc---CCHHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHHHH
Q 021467          105 QADLVCCFQHLQM----CF---ETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQ  157 (312)
Q Consensus       105 ~fD~V~~~~~lh~----~~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~~~  157 (312)
                      +||+|++..+.|+    ..   .+.+..+.++.++.++|+|||++++.....   ..++..++
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~  160 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR  160 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence            8999998654321    11   112345789999999999999999975444   34444443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.29  E-value=7.4e-11  Score=105.20  Aligned_cols=111  Identities=21%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.+ .+      +.++||+
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~  157 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL  157 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence            34569999999999888877765 4569999999999999999988765532 48899999865 22      3578999


Q ss_pred             EEeccchhh------hc------C----------CHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQM------CF------E----------TEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~------~~------~----------~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+++...+.      ..      +          .......+++++.++|+|||.+++....
T Consensus       158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~  219 (251)
T TIGR03534       158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY  219 (251)
T ss_pred             EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence            999654321      00      0          0122357899999999999999987543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.28  E-value=4.4e-11  Score=112.16  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+..+||||||+|..+..++.. +...++|+|+++.+++.|.++....+. .++.++++|+....  ..+  +++++|.|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll--~~~--~~~s~D~I  196 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLL--ELL--PSNSVEKI  196 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhh--hhC--CCCceeEE
Confidence            3568999999999988888776 456899999999999999999877653 34889999985421  111  56899999


Q ss_pred             EeccchhhhcCCHH---HHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       110 ~~~~~lh~~~~~~~---~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      ++.+...+ .....   ....++..++++|+|||.+.+.+-+.+...
T Consensus       197 ~lnFPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~  242 (390)
T PRK14121        197 FVHFPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFE  242 (390)
T ss_pred             EEeCCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHH
Confidence            99886443 11111   126899999999999999999887775443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=1.2e-10  Score=107.19  Aligned_cols=110  Identities=18%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++...+++++++|+.+. +      +.++||+|++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l------~~~~fDlIvs  207 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L------PGRRYDLIVS  207 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C------CCCCccEEEE
Confidence            68999999999877777655 45699999999999999999988766545689999997542 2      2357999998


Q ss_pred             ccch-------------hh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          112 FQHL-------------QM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       112 ~~~l-------------h~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +-..             ++    ++    ...+..+.+++++.++|+|||.+++.+...
T Consensus       208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~  266 (307)
T PRK11805        208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS  266 (307)
T ss_pred             CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence            6321             11    00    012345788999999999999999986654

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.28  E-value=6.9e-12  Score=108.42  Aligned_cols=114  Identities=13%  Similarity=0.122  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      .|++...  .+......++|+|||+|..+.-. .....+|+|+|+|+.||+.|++..+......+..+...++..  +  
T Consensus        22 dw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~i-ae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~--L--   94 (261)
T KOG3010|consen   22 DWFKKIA--SRTEGHRLAWDVGTGNGQAARGI-AEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD--L--   94 (261)
T ss_pred             HHHHHHH--hhCCCcceEEEeccCCCcchHHH-HHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccccc--c--
Confidence            5555432  33333348999999999444444 445779999999999999998876543222223333222222  2  


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEE
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI  145 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~  145 (312)
                        ...+++.|+|+|..++|+ |.    ++.+.+++.++||+.| .+.+-
T Consensus        95 --~g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   95 --LGGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             --cCCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEE
Confidence              113689999999999998 55    8899999999999877 54443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.27  E-value=6.6e-11  Score=89.10  Aligned_cols=103  Identities=24%  Similarity=0.262  Sum_probs=81.2

Q ss_pred             EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      +|||+|||.|..+..+......+++++|+++.+++.+++..... ...++.++..|+.+...     ...++||+|++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~   74 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP   74 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence            58999999998888777656679999999999999988543322 22347888888876432     0247899999999


Q ss_pred             chhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       114 ~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+++.   .+....+++.+.+.|+|||.++++
T Consensus        75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            76652   667899999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.26  E-value=1.1e-10  Score=101.97  Aligned_cols=100  Identities=12%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..+.... .+++++|+++++++.|+++++..+.. ++++..+|......      ..++||+|
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~I  148 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDRI  148 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCEE
Confidence            477899999999997666554443 48999999999999999998765432 38899999755321      24789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++..++++          +.+.+.+.|+|||.+++...
T Consensus       149 ~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPE----------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence            99876554          23457789999999998865

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.26  E-value=1.3e-10  Score=100.21  Aligned_cols=110  Identities=20%  Similarity=0.216  Sum_probs=81.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++.+..+. .+++++.+|+... + ..   ....+|.
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~-~~---~~~~~d~  112 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-L-AQ---LAPAPDR  112 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-H-hh---CCCCCCE
Confidence            47789999999999877766544 446999999999999999998876543 2488899887541 1 00   1234566


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      ++...        ......+++++.++|+|||.+++..++.+.+.
T Consensus       113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~  149 (196)
T PRK07402        113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY  149 (196)
T ss_pred             EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence            65422        12357889999999999999999988876543

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=1.4e-10  Score=104.27  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=86.5

Q ss_pred             HHHHhcC-CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           24 LIKIYSH-PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        24 li~~~~~-~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      |++.+.. .+.+|||+|||.|.....+++. +..+++.+|++..+|+.|+++...++.... .++..|+.+.-       
T Consensus       150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-------  221 (300)
T COG2813         150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-------  221 (300)
T ss_pred             HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-------
Confidence            4444432 3559999999999766666655 457999999999999999999988764322 56677766532       


Q ss_pred             cCCceeEEEeccchhhhcCCH-HHHHHHHHHHHhccCCCcEEEEEec
Q 021467          102 KANQADLVCCFQHLQMCFETE-ERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~-~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                       .++||+|+|+-.+|.-.... .-..+++....++|++||.+.+..-
T Consensus       222 -~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         222 -EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             -cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence             24999999999998632221 2345899999999999999998854

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.24  E-value=2e-10  Score=104.80  Aligned_cols=110  Identities=15%  Similarity=0.283  Sum_probs=83.7

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++....+...++.++++|+.+. +      +..+||+|++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs  188 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS  188 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence            69999999999877777665 34699999999999999999987765444589999998652 2      2347999998


Q ss_pred             ccc-------------hhh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          112 FQH-------------LQM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       112 ~~~-------------lh~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +-.             .+|    ++    ......+.++.++.++|+|||++++.+.+.
T Consensus       189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            632             111    00    112357889999999999999999887654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.22  E-value=4.7e-10  Score=96.03  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=84.5

Q ss_pred             HHHhcCCCC-EEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh--hh
Q 021467           25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ  100 (312)
Q Consensus        25 i~~~~~~~~-~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~--~~  100 (312)
                      ++.++++.. +|||||||+|..+..++.+ +.....-.|+++..+...+......+...-..-+..|+........  -.
T Consensus        18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~   97 (204)
T PF06080_consen   18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP   97 (204)
T ss_pred             HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence            344445444 5999999999999888776 4456778899888876655554443221112234566665422110  00


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ....+||+|+|..++|.  .+.+..+.+++.+.++|++||.|++-.|
T Consensus        98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            12468999999999998  7788899999999999999999998744

The function of this family is unknown.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.21  E-value=1.1e-11  Score=106.21  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=98.2

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      -.++|||||||| .+..-++....+++|+|||..|++.|.++---      -...++|+..  |...  ..+.+||+|++
T Consensus       126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~--Fl~~--~~~er~DLi~A  194 (287)
T COG4976         126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVL--FLED--LTQERFDLIVA  194 (287)
T ss_pred             cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHH--Hhhh--ccCCcccchhh
Confidence            468999999999 44333444556899999999999999886321      1123333321  1110  14589999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEeccc
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~  191 (312)
                      ..++-|    ...++.++--+...|+|||.|.+++-+..                                         
T Consensus       195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~-----------------------------------------  229 (287)
T COG4976         195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLP-----------------------------------------  229 (287)
T ss_pred             hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence            999998    56688999999999999999999843320                                         


Q ss_pred             CCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       192 ~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                           .+|.   |.|..+    ..|-.+-+.+.++++..||+++....-
T Consensus       230 -----~~~~---f~l~ps----~RyAH~~~YVr~~l~~~Gl~~i~~~~t  266 (287)
T COG4976         230 -----DDGG---FVLGPS----QRYAHSESYVRALLAASGLEVIAIEDT  266 (287)
T ss_pred             -----CCCC---eecchh----hhhccchHHHHHHHHhcCceEEEeecc
Confidence                 0010   112221    246677788999999999999987644

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.20  E-value=3.2e-10  Score=96.83  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~~~~fD~V~  110 (312)
                      ..-|||||||+|- ....+.......+|+|||+.|++.|.++--+      ..++.+|+-. .++      .+++||.|+
T Consensus        51 ~~~iLDIGCGsGL-Sg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glpf------rpGtFDg~I  117 (270)
T KOG1541|consen   51 SGLILDIGCGSGL-SGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPF------RPGTFDGVI  117 (270)
T ss_pred             CcEEEEeccCCCc-chheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCC------CCCccceEE
Confidence            5679999999994 4444444446899999999999999974322      3577888764 233      679999998


Q ss_pred             eccchhhhcC-------CHHHHHHHHHHHHhccCCCcEEEEEe-cChhHHHHHH
Q 021467          111 CFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY  156 (312)
Q Consensus       111 ~~~~lh~~~~-------~~~~~~~~l~~i~~~LkpGG~~i~~~-p~~~~l~~~~  156 (312)
                      +..++++.+.       ....+..++..+..+|++|+..++.+ |..+.-.+.+
T Consensus       118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i  171 (270)
T KOG1541|consen  118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI  171 (270)
T ss_pred             EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence            8777665432       24566788999999999999999984 4444333333

>PRK04457 spermidine synthase; Provisional

Probab=99.19  E-value=2.7e-10  Score=102.66  Aligned_cols=116  Identities=13%  Similarity=0.074  Sum_probs=82.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++..+|||||||.|..+..+... +..+++++|+++++++.|++.+.......+++++++|+.+.     +.....+||+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-----l~~~~~~yD~  139 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-----IAVHRHSTDV  139 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-----HHhCCCCCCE
Confidence            45678999999999766666554 45689999999999999999876443334688999997542     1112468999


Q ss_pred             EEeccchhh-hcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          109 VCCFQHLQM-CFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       109 V~~~~~lh~-~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      |++.. .+. .....-....+++++.++|+|||++++...+.+.
T Consensus       140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~  182 (262)
T PRK04457        140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK  182 (262)
T ss_pred             EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence            98753 111 0000112378999999999999999987544433

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.18  E-value=1.2e-10  Score=102.01  Aligned_cols=110  Identities=25%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------C-----CCceEEEEEcCCCCCchh
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------R-----KNFIAEFFEADPCAENFE   96 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~------~-----~~~~~~f~~~D~~~~~~~   96 (312)
                      ...++.+||..|||+|.++..++..+. +|+|+|+|+.+|+++.+.....      .     ...+++++++|.+..+..
T Consensus        34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            345678999999999999988887765 9999999999999985543220      0     112478999999885431


Q ss_pred             hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                           ..++||+|.=..+++.  .+.+......+.+.++|+|||.+++.
T Consensus       113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi  154 (218)
T PF05724_consen  113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI  154 (218)
T ss_dssp             -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred             -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence                 1258999999888875  56888999999999999999995544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=5.1e-10  Score=101.32  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.. .....++.++++|+... +      ..++||+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~  178 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL  178 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence            36689999999999887777665 35699999999999999999887 22233589999998552 2      2478999


Q ss_pred             EEeccchhh------------------h----cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQM------------------C----FETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~------------------~----~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+++....-                  +    ....+..+.+++++.++|+|||++++.+.
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g  239 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG  239 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence            998643210                  0    01234467889999999999999998753

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.17  E-value=1e-09  Score=92.20  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhc-CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           19 FAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        19 ~vk~~li~~~~-~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      -|+.+.+.++. .++.+++|+|||+|.....|+.. +..+++++|-++++++..+++.+..+ -.+++.+.+|+-+.-. 
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~-   98 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALP-   98 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhc-
Confidence            45555565554 48899999999999999999854 55799999999999999999888766 4558899998755211 


Q ss_pred             hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467           97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                           ...++|.|+...+ ..       .+.+++.+...|||||++++....-+.+...+
T Consensus        99 -----~~~~~daiFIGGg-~~-------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~  145 (187)
T COG2242          99 -----DLPSPDAIFIGGG-GN-------IEEILEAAWERLKPGGRLVANAITLETLAKAL  145 (187)
T ss_pred             -----CCCCCCEEEECCC-CC-------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence                 1237999999886 33       68889999999999999999977776655444

>PRK00811 spermidine synthase; Provisional

Probab=99.17  E-value=2.2e-10  Score=104.35  Aligned_cols=113  Identities=12%  Similarity=0.060  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      ++..+||+||||.|+.+..+++. +..+|+++|+++++++.|++.+....    ...+++++.+|+...     +....+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-----l~~~~~  149 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-----VAETEN  149 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-----HhhCCC
Confidence            35679999999999888887776 56799999999999999999875421    133588999997552     111357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +||+|++...-++.....--.+.+++.+.+.|+|||+++....
T Consensus       150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~  192 (283)
T PRK00811        150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG  192 (283)
T ss_pred             cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence            8999998654332111111237889999999999999998643

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.17  E-value=4.9e-10  Score=96.37  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             CCcchHHhHHHHHHHHHHHHhc-CCCCEEEEECCCCCccHHHH----HH---c--C-CCeEEEEeCChHHHHHHHHH---
Q 021467            8 RSELTHHRLYEFAKTALIKIYS-HPYVTVCDLYCGAGVDVDKW----ET---A--L-IANYIGIDVATSGIGEARDT---   73 (312)
Q Consensus         8 R~~~~~~~~~n~vk~~li~~~~-~~~~~VLDlGCG~G~~l~~~----~~---~--~-~~~v~giDis~~~i~~a~~r---   73 (312)
                      |.......+.+.+...++.... .+..+|+..||++|.....+    ..   .  + ..+++|+|||+.+|+.|++-   
T Consensus         7 Rd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~   86 (196)
T PF01739_consen    7 RDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYP   86 (196)
T ss_dssp             TTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEE
T ss_pred             CCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCC
Confidence            3334444445555543343322 25689999999999643322    12   1  1 24899999999999999871   


Q ss_pred             --------------HH--hcC--------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHH
Q 021467           74 --------------WE--NQR--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL  129 (312)
Q Consensus        74 --------------~~--~~~--------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l  129 (312)
                                    +=  ..+        ....+.|.+.|+.+...      ..+.||+|+|..++-|  -+.+....++
T Consensus        87 ~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl  158 (196)
T PF01739_consen   87 ERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVL  158 (196)
T ss_dssp             GGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHH
T ss_pred             HHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHH
Confidence                          10  001        01247899999887222      4589999999999998  5688889999


Q ss_pred             HHHHhccCCCcEEEEE
Q 021467          130 QNVSSLLKPGGYFLGI  145 (312)
Q Consensus       130 ~~i~~~LkpGG~~i~~  145 (312)
                      +.+++.|+|||+|++.
T Consensus       159 ~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  159 RRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             HHHGGGEEEEEEEEE-
T ss_pred             HHHHHHcCCCCEEEEe
Confidence            9999999999999976

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.17  E-value=7.1e-10  Score=104.81  Aligned_cols=112  Identities=17%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|++|++.|+++.+..+  .++.++++|+.+..+.     ..++||+
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~-----~~~~FDL  322 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMP-----SEGKWDI  322 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccc-----cCCCccE
Confidence            35679999999999877776654 55689999999999999999987654  2589999998664321     1357999


Q ss_pred             EEeccchhh-----------------hc----CCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQM-----------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~-----------------~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|+-...-                 ++    ...+..+.+++.+.+.|+|||.+++.+..
T Consensus       323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            999664210                 00    11233568888889999999999876544

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.16  E-value=6.2e-10  Score=95.84  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ...+.||.|+|-|+.+..++.....+|..+|+.+..++.|++...... ..-.++++..+.+...      ..++||+|.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P------~~~~YDlIW  127 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP------EEGKYDLIW  127 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC------CCCcEeEEE
Confidence            357899999999998887777778899999999999999998765421 1225677776654332      357999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+++-|  .+.+++..+|+++...|+|||.+++-
T Consensus       128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            9999988  88999999999999999999998874

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.15  E-value=7.4e-10  Score=99.19  Aligned_cols=110  Identities=20%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++    .+++++|+.+... ..   ..++||+|+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~---~~~~fDlVv  158 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TA---LRGRVDILA  158 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hh---cCCCEeEEE
Confidence            458999999999888777654 44589999999999999999987665    4788899765211 00   135799999


Q ss_pred             eccchh------h------------hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQ------M------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh------~------------~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++-...      .            ++    ...+-.+.+++.+.++|+|||.+++.+...
T Consensus       159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~  219 (251)
T TIGR03704       159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER  219 (251)
T ss_pred             ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            975421      0            00    012235688999999999999999886544

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=9.9e-10  Score=105.79  Aligned_cols=111  Identities=17%  Similarity=0.143  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|+.+..++... ..+|+|+|+++.+++.++++.+..+.  .+.++++|+......  .  ..++||.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~  316 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR  316 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence            378899999999998887777653 36999999999999999999987653  367899998763210  0  2467999


Q ss_pred             EEeccch------------hhhcCCHH-------HHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHL------------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~l------------h~~~~~~~-------~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++....            ++ ..+.+       ..+.++.++.++|||||+++.++.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            9953321            11 11222       246789999999999999998764

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.13  E-value=5.6e-10  Score=106.06  Aligned_cols=114  Identities=16%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|+.....+..+..+++++|+|+.+++.|++++..++.. .+++++++|+.+.-  ..+....++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l--~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL--RTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH--HHHHhcCCCCCEE
Confidence            57899999999998776655556669999999999999999999887654 35899999986521  1111124689999


Q ss_pred             EeccchhhhcCCH-------HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++.-..-  ..+.       .....++..+.++|+|||.++..+.+
T Consensus       298 ilDPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs  341 (396)
T PRK15128        298 VMDPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS  341 (396)
T ss_pred             EECCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            9975421  0122       23456667788999999999976544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.13  E-value=6.4e-10  Score=100.39  Aligned_cols=113  Identities=13%  Similarity=0.045  Sum_probs=81.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  ....|+++|+++.+++.++++.+..+. ..+.+++.|+.....      ..+.||
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~------~~~~fD  142 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA------AVPKFD  142 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh------hccCCC
Confidence            47889999999999988776654  235899999999999999999987654 247888888754322      235699


Q ss_pred             EEEeccc------hhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQH------LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~------lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|++...      ++.-     ..+.       .....+|+++.++|||||+++.++..-
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9987321      1100     0111       234679999999999999999875443

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.13  E-value=9.5e-10  Score=106.47  Aligned_cols=110  Identities=25%  Similarity=0.200  Sum_probs=81.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|+.+..++..  ...+++|+|+|+.+++.++++.+..+.. .++++++|+....       ++.+||+
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~  321 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA  321 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence            6789999999999877666543  3458999999999999999999876542 4889999986632       2468999


Q ss_pred             EEeccc------h------hhhcCCHH-------HHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQH------L------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~------l------h~~~~~~~-------~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++-..      +      ++ ..+.+       ....+|.++.++|||||+++..+..-
T Consensus       322 Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        322 ILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             EEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            986211      1      11 11222       24578999999999999999886554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.12  E-value=8.1e-10  Score=102.05  Aligned_cols=101  Identities=11%  Similarity=0.015  Sum_probs=76.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .+++.+|||+|||+|..+..+++..  ...|+|+|+++++++.|+++.+..+. .++.++++|+.....      ...+|
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f  150 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY  150 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence            3477899999999998777766542  24799999999999999998876653 347888998765332      23679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++..+++.          ....+.+.|+|||.+++..
T Consensus       151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence            99998876554          1234567999999988754

>PTZ00146 fibrillarin; Provisional

Probab=99.12  E-value=7.5e-10  Score=100.05  Aligned_cols=105  Identities=14%  Similarity=0.064  Sum_probs=76.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.++.+|||||||+|..+..++..  ....|+++|+|+.|++...+.....   .++.++..|+.....   +.....+|
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~---y~~~~~~v  203 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK---YRMLVPMV  203 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh---hhcccCCC
Confidence            458899999999999888777765  2458999999998665544443321   127888999865321   11123579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++..+      ..++.+.++.++.+.|||||+|++.
T Consensus       204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence            99988763      2445677888999999999999985

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.11  E-value=1.1e-09  Score=105.42  Aligned_cols=115  Identities=16%  Similarity=0.099  Sum_probs=82.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|+.+..++.. +..+++|+|+++.+++.++++.+..+....+.+..+|.......    ....+||.|
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~----~~~~~fD~V  313 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW----AENEQFDRI  313 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc----ccccccCEE
Confidence            6889999999999988877664 44699999999999999999998776443445566666543210    024689999


Q ss_pred             Eec------cchhhhc-----CCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCF------QHLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~------~~lh~~~-----~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++.      ..++..-     .+.       .....+|.++.++|||||+++.++..-
T Consensus       314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            863      2233210     111       125789999999999999999885543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=1.3e-09  Score=104.94  Aligned_cols=114  Identities=16%  Similarity=0.079  Sum_probs=83.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +..+++++|+|+.+++.++++.+..+.. .+.++++|+...+..     ..++||
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~-----~~~~fD  309 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEY-----VQDTFD  309 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhh-----hhccCC
Confidence            37789999999999988777654  3569999999999999999998876542 378999998653310     246899


Q ss_pred             EEEeccch---hhh--------cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHL---QMC--------FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~l---h~~--------~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|++....   ...        ..+.       ....++|.++.+.|||||+++.++..-
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            99873221   110        0111       234778999999999999999886554

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.10  E-value=1e-09  Score=105.95  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  ...+++++|+++.+++.++++.+..+.. .+.++++|+......  .....++||
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~--~~~~~~~fD  327 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL--KPQWRGYFD  327 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc--cccccccCC
Confidence            36889999999999988877664  3458999999999999999999876643 388999998764310  000246899


Q ss_pred             EEEecc------chhhhc-----CCHHH-------HHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~------~lh~~~-----~~~~~-------~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .|++..      +++..-     .+.++       ...+|.++.++|||||+++.++..
T Consensus       328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs  386 (434)
T PRK14901        328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT  386 (434)
T ss_pred             EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            999732      222100     11122       578899999999999999877543

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.10  E-value=9.3e-10  Score=97.54  Aligned_cols=106  Identities=11%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      +..+|||+|||+|..+..++..  +..+++++|+++++++.|+++++..+...+++++.+|+.+. + +.+..  +.++|
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f  145 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF  145 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence            5679999999999766655543  34699999999999999999999887666799999998652 1 11110  14689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++...       ......++..+.++|+|||.+++.
T Consensus       146 D~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        146 DFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            99987542       344567889999999999998865

>PHA03411 putative methyltransferase; Provisional

Probab=99.09  E-value=6.6e-10  Score=99.44  Aligned_cols=102  Identities=14%  Similarity=0.023  Sum_probs=75.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||+|||+|.....++.. +..+++|+|+++.|++.|+++..      ++.++++|+.+..       ...+||+|
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI  130 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV  130 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence            4579999999999776666554 34699999999999999988753      2788999987643       24689999


Q ss_pred             EeccchhhhcCC-HHH---------------HHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~-~~~---------------~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +++..+++.-.. ...               ...++..+..+|+|+|.+++.
T Consensus       131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            998876652111 111               246778888899999977665

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.08  E-value=8.8e-10  Score=108.05  Aligned_cols=109  Identities=15%  Similarity=0.144  Sum_probs=80.9

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++...++.++++|+.+. +      ..++||+|+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlIv  211 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFIV  211 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEEE
Confidence            468999999999877766654 55699999999999999999987665444588899987542 2      246899999


Q ss_pred             eccchh--------------h----h-cC---CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQ--------------M----C-FE---TEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh--------------~----~-~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+-...              |    + +.   ..+..+.+++++.++|+|||.+++.+.
T Consensus       212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig  270 (506)
T PRK01544        212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG  270 (506)
T ss_pred             ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            954211              0    0 00   123457788999999999999998743

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.08  E-value=1.9e-09  Score=90.75  Aligned_cols=107  Identities=12%  Similarity=0.040  Sum_probs=78.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.. ..+++|+|+++.+++.++++....   .+++++++|+.+..+      ++..||.|
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~v   81 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYKV   81 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCEE
Confidence            46789999999999888887766 569999999999999999887542   248899999987665      34579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      +++...|.   +.+....++++  ..+.++|.+++..-.++.
T Consensus        82 i~n~Py~~---~~~~i~~~l~~--~~~~~~~~l~~q~e~a~r  118 (169)
T smart00650       82 VGNLPYNI---STPILFKLLEE--PPAFRDAVLMVQKEVARR  118 (169)
T ss_pred             EECCCccc---HHHHHHHHHhc--CCCcceEEEEEEHHHhHH
Confidence            98877664   23334444432  224588888877443333

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.08  E-value=1.4e-09  Score=110.61  Aligned_cols=118  Identities=16%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +..+. ++.+|||+|||+|+....++..+..+|+++|+|+.+++.|+++++.++.. .+++++++|+.+. +    ....
T Consensus       533 ~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l----~~~~  606 (702)
T PRK11783        533 IGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-L----KEAR  606 (702)
T ss_pred             HHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-H----HHcC
Confidence            44444 47899999999999888887777778999999999999999999887654 4689999998652 1    1124


Q ss_pred             CceeEEEeccchh-------hhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          104 NQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       104 ~~fD~V~~~~~lh-------~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++||+|++.....       ..+........++..+.++|+|||.+++.+..
T Consensus       607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            6899999964311       11223455678899999999999999876443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.05  E-value=2.7e-09  Score=103.31  Aligned_cols=113  Identities=16%  Similarity=0.080  Sum_probs=82.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +..+++|+|+++.+++.++++.+..+.. .+.++++|+.....  .   ..++||
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD  322 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD  322 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence            36789999999999988877764  3569999999999999999998876643 38899999876321  0   126799


Q ss_pred             EEEeccchh------h-----hcCCHHH-------HHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQHLQ------M-----CFETEER-------ARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~lh------~-----~~~~~~~-------~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++.....      .     ...+..+       ...+++++.++|||||.++.++..
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            999754211      0     0111222       357899999999999999976543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.03  E-value=1.4e-09  Score=94.51  Aligned_cols=102  Identities=14%  Similarity=0.087  Sum_probs=73.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++++.+|||||||+|..+..++..  +...|+++|+.+...+.|++++...+. .++.++++|......      ...+|
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~------~~apf  142 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWP------EEAPF  142 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTG------GG-SE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccc------cCCCc
Confidence            568999999999999766655543  344799999999999999999987543 258999999755322      34789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |.|++..+...    .      =..+.+.|++||++++-.-
T Consensus       143 D~I~v~~a~~~----i------p~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  143 DRIIVTAAVPE----I------PEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             CEEEEeeccch----H------HHHHHHhcCCCcEEEEEEc
Confidence            99999986543    1      2335668999999998644

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=99.01  E-value=2.7e-09  Score=93.45  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .+.+|||+|||+|..+..+++.    +..+++|+|+++.+++.|++....      +.++++|+....+       +++|
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------~~~~~~D~~~~~~-------~~~F  115 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------ATWINADALTTEF-------DTLF  115 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------CEEEEcchhcccc-------cCCc
Confidence            3679999999999777766543    345899999999999999977532      7788999875433       4689


Q ss_pred             eEEEeccchhhhc--------CCHHHHHHHHHHHHhccCCCcE
Q 021467          107 DLVCCFQHLQMCF--------ETEERARRLLQNVSSLLKPGGY  141 (312)
Q Consensus       107 D~V~~~~~lh~~~--------~~~~~~~~~l~~i~~~LkpGG~  141 (312)
                      |+|+++-..+-.-        .+..-...++..+.+++++|+.
T Consensus       116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            9999987654210        1123356688888887777775

>PRK01581 speE spermidine synthase; Validated

Probab=99.00  E-value=1.5e-08  Score=94.17  Aligned_cols=113  Identities=13%  Similarity=0.052  Sum_probs=78.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHH--HH---hcC-CCceEEEEEcCCCCCchhhhhhhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r--~~---~~~-~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ....+||+||||.|..+..+++. +..+++++|+++++++.|++.  +.   ... ...+++++.+|+...     +...
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-----L~~~  223 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-----LSSP  223 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-----HHhc
Confidence            34579999999999877777765 457999999999999999962  11   111 123588899987652     1113


Q ss_pred             CCceeEEEeccchhhh-cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~-~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      .++||+|++...-... ....---.++++.+.+.|+|||+++....
T Consensus       224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~  269 (374)
T PRK01581        224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN  269 (374)
T ss_pred             CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            5789999987531100 01112236789999999999999988743

>TIGR00417 speE spermidine synthase

Probab=99.00  E-value=5.1e-09  Score=94.85  Aligned_cols=111  Identities=11%  Similarity=0.070  Sum_probs=79.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~---~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ...+||+||||+|+.+..+++.. ..+++++|+++++++.|++.+.....   ..+++++.+|....     +....++|
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----l~~~~~~y  146 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----LADTENTF  146 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----HHhCCCCc
Confidence            44699999999998777776654 57899999999999999987654221   12467777775431     11124789


Q ss_pred             eEEEeccchhhhcCCHHH--HHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~--~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|++...-..  .....  ..++++.+.+.|+|||++++...+
T Consensus       147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            99998654222  11111  468899999999999999987443

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.99  E-value=6.1e-09  Score=89.87  Aligned_cols=121  Identities=7%  Similarity=-0.003  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhc--CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        18 n~vk~~li~~~~--~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      .-++..+++.+.  .++.+|||+|||+|.....++..+..+++++|+++.+++.|+++++.++. .++.++++|+... +
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~-l  115 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSF-L  115 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHH-H
Confidence            334444444332  25679999999999777655555667999999999999999998877653 2588999987542 1


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHh--ccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~--~LkpGG~~i~~~p~~  149 (312)
                          .....+||+|++.-..+.  .   ....+++.+..  +|+|+|++++..+..
T Consensus       116 ----~~~~~~fDlV~~DPPy~~--g---~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        116 ----AQPGTPHNVVFVDPPFRK--G---LLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             ----hhcCCCceEEEECCCCCC--C---hHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence                112357999999886443  1   13344555544  589999999886543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=8.9e-09  Score=93.57  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=79.5

Q ss_pred             EEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467           34 TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~  112 (312)
                      +|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++...++. .++.+++.|.+..-        .++||+|+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence            79999999998777777664 35999999999999999999988775 44556666665522        3589999996


Q ss_pred             cch-hh-----------------h---cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          113 QHL-QM-----------------C---FETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       113 ~~l-h~-----------------~---~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      -.. -.                 +   ....+..+.++.++.+.|+|||.+++-+-
T Consensus       184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            531 00                 0   01234568899999999999999998754

>PLN02366 spermidine synthase

Probab=98.98  E-value=3.8e-09  Score=97.06  Aligned_cols=113  Identities=11%  Similarity=0.015  Sum_probs=81.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .++..+||+||||.|+.+..+++.+ ..+++.+||++.+++.|++.+...+   ...+++++.+|+...--  ..  +.+
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--~~--~~~  164 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--NA--PEG  164 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh--hc--cCC
Confidence            3456899999999999888887764 5789999999999999999875421   12358999999754110  00  246


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +||+|++-..-+......--...+++.+.++|+|||+++..
T Consensus       165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            89999986543321111112467899999999999999865

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=4.9e-09  Score=89.95  Aligned_cols=110  Identities=14%  Similarity=0.117  Sum_probs=82.5

Q ss_pred             HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      +...+++.. ..++.+|||||||+|..+.-+++.. .+|+.+|+.++..+.|+++++..+.. ++.+.++|......   
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~---  134 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP---  134 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC---
Confidence            444555554 4589999999999996665555443 39999999999999999999887643 39999999877433   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                         +..+||.|++..+.-.          .=+.+.+.||+||++++-+-
T Consensus       135 ---~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 ---EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             ---CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence               4589999998885433          12334568999999997644

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=9.9e-09  Score=90.06  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=92.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.|+.+|||.|.|+|..+..++..  +.++|+.+|+-++..+.|+++++..+....+.+..+|+.+...       ...|
T Consensus        92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v  164 (256)
T COG2519          92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV  164 (256)
T ss_pred             CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence            458999999999999777766643  5579999999999999999999887665568888899887554       3489


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      |+|+.         +..+.-.++.+++++|+|||.+++-.|+.+.+.+.+.
T Consensus       165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            99863         3445778899999999999999999999987765554

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=7.7e-10  Score=95.01  Aligned_cols=112  Identities=21%  Similarity=0.300  Sum_probs=94.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ....++|||||-|.....+...+..+++-+|.|-.|++.++..-. +  .......++|-...++      +++++|+|+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p--~i~~~~~v~DEE~Ldf------~ens~DLii  142 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P--SIETSYFVGDEEFLDF------KENSVDLII  142 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C--ceEEEEEecchhcccc------cccchhhhh
Confidence            456899999999988888888888999999999999998876522 2  3446677888766666      789999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      +..++|+    ..++...+..++..|||+|.|+++....+.+++.
T Consensus       143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL  183 (325)
T KOG2940|consen  143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL  183 (325)
T ss_pred             hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence            9999999    6678889999999999999999998888877654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.94  E-value=5.4e-09  Score=95.48  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      -.+..|||+|||+|-.....++++..+|+|+|-|.-+ +.|++....++....++++.+.+.+..+      |..+.|+|
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDiI  131 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDII  131 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeEE
Confidence            3688999999999955555556788999999999766 8999999988877779999998887655      45899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      ++-+. -|++..+.-+...|-.=-+.|+|||.++
T Consensus       132 vSEWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  132 VSEWM-GYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             eehhh-hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            98663 3333335556666666679999999975

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.92  E-value=1.2e-08  Score=92.74  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=78.7

Q ss_pred             CCEEEEECCCCCccHHHH----HHc-----CCCeEEEEeCChHHHHHHHHHH-H----------------hc------C-
Q 021467           32 YVTVCDLYCGAGVDVDKW----ETA-----LIANYIGIDVATSGIGEARDTW-E----------------NQ------R-   78 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~----~~~-----~~~~v~giDis~~~i~~a~~r~-~----------------~~------~-   78 (312)
                      ..+|+..||++|.....+    ...     ...+|+|+|||+.+|+.|++-. .                ..      + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            479999999999633222    111     1247999999999999998731 0                00      0 


Q ss_pred             ------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        79 ------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                            ....+.|.+.|+.+.++.     ..+.||+|+|.+++.|  -+.+....+++++++.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                  112368888888764431     2478999999999988  56888999999999999999998765

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.92  E-value=8.6e-09  Score=91.66  Aligned_cols=96  Identities=26%  Similarity=0.264  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|+|||+|.|..+..++++ +..+++..|+ ++.++.+++   .    .+++++.+|+. .++      + . +|++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~------P-~-~D~~  162 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL------P-V-ADVY  162 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC------S-S-ESEE
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh------c-c-ccce
Confidence            5568999999999888888766 5679999999 778888887   2    23999999998 454      3 3 9999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCC--cEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG--G~~i~~  145 (312)
                      ++...+|.  .+.++...+|+++++.|+||  |++++.
T Consensus       163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~  198 (241)
T PF00891_consen  163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII  198 (241)
T ss_dssp             EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred             eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            99999999  78999999999999999999  999987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.92  E-value=1.3e-08  Score=87.76  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ....+||||||.|..+..++.. +...++|+|++...+..|.++....+. .++.++++|+... + ..+. +++++|.|
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~-l-~~~~-~~~~v~~i   92 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDAREL-L-RRLF-PPGSVDRI   92 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTH-H-HHHS-TTTSEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHH-H-hhcc-cCCchheE
Confidence            3448999999999999888766 667999999999999999988876542 3589999998662 1 1111 35899999


Q ss_pred             Eeccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          110 CCFQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       110 ~~~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      ..+|.=      |+  ...--...++..++++|+|||.+.+.|-+.+...
T Consensus        93 ~i~FPDPWpK~rH~--krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~  140 (195)
T PF02390_consen   93 YINFPDPWPKKRHH--KRRLVNPEFLELLARVLKPGGELYFATDVEEYAE  140 (195)
T ss_dssp             EEES-----SGGGG--GGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHH
T ss_pred             EEeCCCCCcccchh--hhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            998862      21  0011237899999999999999998876665443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.91  E-value=1.9e-08  Score=97.32  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=79.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++.+.++. .+++++++|+.+...  .....+++||+|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~--~~~~~~~~fD~V  371 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT--DQPWALGGFDKV  371 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh--hhhhhcCCCCEE
Confidence            467899999999998777766554 6999999999999999998876653 248999999864210  000124679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      ++.-.-.-       ....++.+.+ ++|++++++++ |...+.+-+
T Consensus       372 i~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl  409 (443)
T PRK13168        372 LLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDA  409 (443)
T ss_pred             EECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccH
Confidence            98654221       2334555555 68998888775 555554443

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=7.2e-08  Score=85.11  Aligned_cols=141  Identities=15%  Similarity=0.076  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 021467           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (312)
Q Consensus        16 ~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~   94 (312)
                      +..||...+-+.-...+..+||+|||+|..+..++.. +...++++|.|+.++..|.++.........+..++.++....
T Consensus       133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~  212 (328)
T KOG2904|consen  133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA  212 (328)
T ss_pred             HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence            3344444444444445678999999999888777665 667999999999999999998877665556777766665544


Q ss_pred             hhhhhhhcCCceeEEEeccch--hh--------------------hcCCHHHHHHHHHHHHhccCCCcEEEEEe---cCh
Q 021467           95 FETQMQEKANQADLVCCFQHL--QM--------------------CFETEERARRLLQNVSSLLKPGGYFLGIT---PDS  149 (312)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~l--h~--------------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~---p~~  149 (312)
                      +.+. +...++.|+++|+-..  +.                    -.+..+.+..++.-+.|+|+|||.+.+..   +..
T Consensus       213 ~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~  291 (328)
T KOG2904|consen  213 SDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH  291 (328)
T ss_pred             cccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence            3321 1145899999996531  00                    01223455677788899999999999874   455


Q ss_pred             hHHHHHHH
Q 021467          150 STIWAKYQ  157 (312)
Q Consensus       150 ~~l~~~~~  157 (312)
                      ..+.+.+.
T Consensus       292 ~~lv~~~m  299 (328)
T KOG2904|consen  292 SYLVRIWM  299 (328)
T ss_pred             cHHHHHHH
Confidence            55655554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.88  E-value=1.2e-08  Score=88.44  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=81.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      ...+||+|||++|..+..++..  ..++++.+|++++..+.|++.++..+...+++++.+|+.+.  ...+..  ..++|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~--l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV--LPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH--HHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh--HHHHHhccCCCce
Confidence            4579999999999777777665  34699999999999999999998877666799999987541  111211  13689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+.-..-.       +....+..+.++|+|||.+++.
T Consensus       123 D~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~D  154 (205)
T PF01596_consen  123 DFVFIDADKR-------NYLEYFEKALPLLRPGGVIIAD  154 (205)
T ss_dssp             EEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEccccc-------chhhHHHHHhhhccCCeEEEEc
Confidence            9999876433       2567788888999999999987

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.87  E-value=4.6e-08  Score=87.83  Aligned_cols=128  Identities=19%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             cchHHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHH----Hc------CCCeEEEEeCChHHHHHHHHH-HH---
Q 021467           10 ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWE----TA------LIANYIGIDVATSGIGEARDT-WE---   75 (312)
Q Consensus        10 ~~~~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~----~~------~~~~v~giDis~~~i~~a~~r-~~---   75 (312)
                      ..+...+.+.+...|+..-.....+|+-+||++|.-...++    ..      ...+++|+|||..+|+.|+.- |.   
T Consensus        75 ~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~  154 (268)
T COG1352          75 PEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE  154 (268)
T ss_pred             cHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence            33344444555554444333246799999999996332221    11      135899999999999999761 11   


Q ss_pred             ---h------------cCC---------CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 021467           76 ---N------------QRK---------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN  131 (312)
Q Consensus        76 ---~------------~~~---------~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~  131 (312)
                         .            ...         ...+.|-..|+.....      ..+.||+|+|-.+|-|  -+.+...+++..
T Consensus       155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~  226 (268)
T COG1352         155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRR  226 (268)
T ss_pred             hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHH
Confidence               0            000         1235777888777653      2478999999999998  668889999999


Q ss_pred             HHhccCCCcEEEEE
Q 021467          132 VSSLLKPGGYFLGI  145 (312)
Q Consensus       132 i~~~LkpGG~~i~~  145 (312)
                      ++..|+|||++++-
T Consensus       227 f~~~L~~gG~LflG  240 (268)
T COG1352         227 FADSLKPGGLLFLG  240 (268)
T ss_pred             HHHHhCCCCEEEEc
Confidence            99999999999975

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.87  E-value=3.3e-08  Score=93.14  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~-~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+...+. +.+|||+-|=||+.....+..+..+|++||+|..+|+.|+++++-++. ..++.|+++|+.+.  .......
T Consensus       211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~~  287 (393)
T COG1092         211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAERR  287 (393)
T ss_pred             HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--HHHHHhc
Confidence            3455555 899999999999999988888888999999999999999999998875 34589999998762  2222223


Q ss_pred             CCceeEEEeccc-----hhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQH-----LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~-----lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+||+|++--.     -...+.-..+...++..+.++|+|||+++.++...
T Consensus       288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            469999998432     11112335567888999999999999999886665

>PRK03612 spermidine synthase; Provisional

Probab=98.86  E-value=1.5e-08  Score=99.82  Aligned_cols=113  Identities=12%  Similarity=0.013  Sum_probs=80.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHH--HHhcC----CCceEEEEEcCCCCCchhhhhhhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r--~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ++..+|||+|||+|..+..+++.+. .+++++|+++++++.|++.  ....+    ...+++++.+|..+.     +...
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-----l~~~  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-----LRKL  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-----HHhC
Confidence            4567999999999988887777654 7999999999999999983  32211    123588899987642     1113


Q ss_pred             CCceeEEEeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +++||+|++...-..... ..--.+++++.+.++|+|||.+++...
T Consensus       371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence            478999999764322000 011135689999999999999998743

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.1e-08  Score=85.84  Aligned_cols=74  Identities=22%  Similarity=0.098  Sum_probs=61.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|+|+|||||......+..+..+|+|+|+++++++.|+++....  ...+.|+++|+.+         ..+.+|.|+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~---------~~~~~dtvi  113 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD---------FRGKFDTVI  113 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh---------cCCccceEE
Confidence            56789999999998777776778889999999999999999998763  3459999999977         357899888


Q ss_pred             eccch
Q 021467          111 CFQHL  115 (312)
Q Consensus       111 ~~~~l  115 (312)
                      ++-.+
T Consensus       114 mNPPF  118 (198)
T COG2263         114 MNPPF  118 (198)
T ss_pred             ECCCC
Confidence            87543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.85  E-value=5.5e-08  Score=83.41  Aligned_cols=113  Identities=8%  Similarity=-0.006  Sum_probs=78.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||++||+|.....++..+..+++++|+++.+++.++++.+.++...+++++++|+... + ..+......||+|+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~  126 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY  126 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence            578999999999988888877777799999999999999999988776544588999998442 1 11111123478888


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .--....  ...+..-..+.+ ..+|+++|.+++..+.
T Consensus       127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            7654432  212223223322 3579999998887554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.84  E-value=8.3e-08  Score=88.48  Aligned_cols=113  Identities=12%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhhh-
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE-  101 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~-~~~~~~~~~f~~~D~~~~~~~~~~~~-  101 (312)
                      +.++..++|+|||+|.-...++.+     ....|+++|||.++|+.+.++.. ..-....+.-+++|..+.--  .++. 
T Consensus        74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~~  151 (319)
T TIGR03439        74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRP  151 (319)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hcccc
Confidence            456779999999999755444332     24589999999999999999987 32123445557887654210  0110 


Q ss_pred             -cCCceeEEEec-cchhhhcCCHHHHHHHHHHHHh-ccCCCcEEEEE
Q 021467          102 -KANQADLVCCF-QHLQMCFETEERARRLLQNVSS-LLKPGGYFLGI  145 (312)
Q Consensus       102 -~~~~fD~V~~~-~~lh~~~~~~~~~~~~l~~i~~-~LkpGG~~i~~  145 (312)
                       ......+++.. .++.+  .+.+.+..+|+++++ .|+|||.|++.
T Consensus       152 ~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       152 ENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             cccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence             12335666554 45777  567889999999999 99999998876

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.83  E-value=2.6e-08  Score=88.81  Aligned_cols=132  Identities=20%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             HhHHHHHHHHHHHHhcC---CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC------------
Q 021467           14 HRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR------------   78 (312)
Q Consensus        14 ~~~~n~vk~~li~~~~~---~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~------------   78 (312)
                      ..+..|....+-+.+..   ++.++||||||.--.-..-+.....+++..|.++..+++.++-.+..+            
T Consensus        36 ~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~  115 (256)
T PF01234_consen   36 DEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC  115 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred             chhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence            45666666666666654   467999999998522111122255689999999999987766443210            


Q ss_pred             ----C-----------Cce-EEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEE
Q 021467           79 ----K-----------NFI-AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF  142 (312)
Q Consensus        79 ----~-----------~~~-~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~  142 (312)
                          .           +.. -..+.+|+...+........+.+||+|++.+++..+..+.+....+++++.++|||||.|
T Consensus       116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L  195 (256)
T PF01234_consen  116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL  195 (256)
T ss_dssp             HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence                0           001 246788888755422100012469999999999999999999999999999999999999


Q ss_pred             EEE
Q 021467          143 LGI  145 (312)
Q Consensus       143 i~~  145 (312)
                      ++.
T Consensus       196 il~  198 (256)
T PF01234_consen  196 ILA  198 (256)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.82  E-value=3.7e-08  Score=91.17  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++.+.++. .+++|+++|+.+...     ...+.||+|+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv  245 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL  245 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence            46899999999998887776644 6999999999999999999887764 358999999855321     0235799999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      +.-.- .  .-.   ..+++.+ ..++|+++++++ .|...+.+
T Consensus       246 ~dPPr-~--G~~---~~~~~~l-~~~~~~~ivyvs-c~p~t~~r  281 (315)
T PRK03522        246 VNPPR-R--GIG---KELCDYL-SQMAPRFILYSS-CNAQTMAK  281 (315)
T ss_pred             ECCCC-C--Ccc---HHHHHHH-HHcCCCeEEEEE-CCcccchh
Confidence            87541 1  101   1222222 336787766665 44444433

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.82  E-value=2e-08  Score=87.08  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC-CceEE--EEE--------------c----
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK-NFIAE--FFE--------------A----   88 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~-~~~~~--f~~--------------~----   88 (312)
                      .+..+|||||-+|.....+++. +...++|+||++..|+.|++..+.... ...+.  +..              +    
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            4678999999999777776665 667899999999999999987643210 00000  000              0    


Q ss_pred             --CCCCC-ch---------hhhhhhcCCceeEEEeccc---hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           89 --DPCAE-NF---------ETQMQEKANQADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        89 --D~~~~-~~---------~~~~~~~~~~fD~V~~~~~---lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                        |..+. .+         .+.+......||+|.|...   +| .-.+.+.+..+++.++++|.|||+|++-
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence              00000 00         0011124578999999655   34 2345778999999999999999999985

>PLN02476 O-methyltransferase

Probab=98.82  E-value=4.6e-08  Score=88.30  Aligned_cols=106  Identities=8%  Similarity=0.021  Sum_probs=82.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f  106 (312)
                      +..+|||||||+|..+..++..  ...+++.+|.+++..+.|++.++..+...+++++.+|+.+. + +.+.  ...++|
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L-~~l~~~~~~~~F  195 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-L-KSMIQNGEGSSY  195 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-H-HHHHhcccCCCC
Confidence            4679999999999777666553  24589999999999999999999887766799999997652 1 1111  113689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+.-..       ..+....++.+.++|+|||.+++.
T Consensus       196 D~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        196 DFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             CEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence            99987653       445788889999999999999876

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.81  E-value=1.7e-07  Score=83.78  Aligned_cols=112  Identities=19%  Similarity=0.191  Sum_probs=91.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...+||||+||.|+.+...+.. +  ..++.-.|.|+..++.+++..+..+...-++|.++|+++..-.   ..-+...|
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l---~~l~p~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL---AALDPAPT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh---hccCCCCC
Confidence            4579999999999988877654 2  4689999999999999999999988776679999999884321   11235678


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +++++..+. .|.+-+.....+..+++++.|||++|.|.
T Consensus       212 l~iVsGL~E-lF~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  212 LAIVSGLYE-LFPDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             EEEEecchh-hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence            888777555 47888888999999999999999999994

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.79  E-value=3.1e-08  Score=88.04  Aligned_cols=119  Identities=17%  Similarity=0.200  Sum_probs=88.5

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .-+.||.+|||.|.|+|..+..++..  +.++|+..|+.++..+.|++.++..+....+.+.+.|+....+...   .+.
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~  112 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LES  112 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TT
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccC
Confidence            34569999999999999887777654  5579999999999999999999988776679999999986554211   136


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhcc-CCCcEEEEEecChhHHHHHHH
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~L-kpGG~~i~~~p~~~~l~~~~~  157 (312)
                      .+|.|+.-.         .+.-.++..+.++| ||||++++-.|+-+.+.+...
T Consensus       113 ~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~  157 (247)
T PF08704_consen  113 DFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE  157 (247)
T ss_dssp             SEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred             cccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence            899987543         22445688899999 899999999999987765554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.78  E-value=6.5e-08  Score=84.94  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ..+||||||.|..+..+++. +...++|||+....+..|.++....+.. ++.+++.|+...  ...+. ++++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~--l~~~~-~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEV--LDYLI-PDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHH--HHhcC-CCCCeeEEEE
Confidence            48999999999999988876 5568999999999999999998876642 688899998652  22222 3569999999


Q ss_pred             ccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          112 FQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       112 ~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      +|.=      |+  ...--...+++.+.+.|+|||.+.+.|-+.+....
T Consensus       126 ~FPDPWpKkRH~--KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         126 NFPDPWPKKRHH--KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             ECCCCCCCcccc--ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            8862      22  11222478999999999999999999877765544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.76  E-value=1.1e-07  Score=80.34  Aligned_cols=113  Identities=19%  Similarity=0.048  Sum_probs=71.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .++.+|||||||+|-.....+.. +..+|+..|..+ .++.++.+.+.++  ...++.+...|-.+......+  ...+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~  120 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF  120 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence            36789999999999544444444 577999999999 9999998887765  334466666664432111111  24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|++..++..    .+..+.+++.+.++|+|+|.+++..+..
T Consensus       121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999997665    5678899999999999999988775543

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.75  E-value=8.2e-08  Score=92.57  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             CCEEEEECCCCCccHHHHHHcC-----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~-----~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +..|||+|||+|......++++     ..+|++|+-++.++...+++.+.++...+++++++|+.+..+       +.++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            4689999999996655555543     569999999999998888886766666679999999999776       4699


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      |+|++-. |-. |...+...+.|....+.|||||++|
T Consensus       260 DIIVSEl-LGs-fg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  260 DIIVSEL-LGS-FGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             eEEEEec-cCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence            9999843 111 2223345667899999999999985

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PLN02672 methionine S-methyltransferase

Probab=98.74  E-value=7e-08  Score=100.96  Aligned_cols=113  Identities=18%  Similarity=0.093  Sum_probs=81.1

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC---------------CceEEEEEcCCCCCch
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF   95 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~---------------~~~~~f~~~D~~~~~~   95 (312)
                      +.+|||+|||+|.....++.. +..+++|+|+|+++++.|+++...++.               ..+++|+++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999888777665 446999999999999999999876421               1258999999875321


Q ss_pred             hhhhhhcCCceeEEEeccch------h---------------h------h-------cCCHHHHHHHHHHHHhccCCCcE
Q 021467           96 ETQMQEKANQADLVCCFQHL------Q---------------M------C-------FETEERARRLLQNVSSLLKPGGY  141 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~l------h---------------~------~-------~~~~~~~~~~l~~i~~~LkpGG~  141 (312)
                           ....+||+|+++-..      .               |      +       -....-.+.++.++.++|+|||.
T Consensus       199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~  273 (1082)
T PLN02672        199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI  273 (1082)
T ss_pred             -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence                 012369999985431      0               0      0       01123347888999999999999


Q ss_pred             EEEEecCh
Q 021467          142 FLGITPDS  149 (312)
Q Consensus       142 ~i~~~p~~  149 (312)
                      +++-+-..
T Consensus       274 l~lEiG~~  281 (1082)
T PLN02672        274 MIFNMGGR  281 (1082)
T ss_pred             EEEEECcc
Confidence            99875433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.74  E-value=4.6e-08  Score=86.31  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ..++||||.|.|+.+..++. ...+|++.++|+.|....+++    +    .+  +.|+.+..      ..+.+||+|+|
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g----~~--vl~~~~w~------~~~~~fDvIsc  157 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----G----FT--VLDIDDWQ------QTDFKFDVISC  157 (265)
T ss_pred             CCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----C----Ce--EEehhhhh------ccCCceEEEee
Confidence            45799999999988887743 567899999999996544443    3    22  22332211      13568999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ...+--+.    +...+|+.+++.|+|+|++++.
T Consensus       158 LNvLDRc~----~P~~LL~~i~~~l~p~G~lilA  187 (265)
T PF05219_consen  158 LNVLDRCD----RPLTLLRDIRRALKPNGRLILA  187 (265)
T ss_pred             hhhhhccC----CHHHHHHHHHHHhCCCCEEEEE
Confidence            99776643    4888999999999999999977

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.73  E-value=1.8e-07  Score=79.55  Aligned_cols=127  Identities=20%  Similarity=0.251  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc--CCC--------eEEEEeCChHHHHHHHHHHHhcCCCceE
Q 021467           15 RLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIA   83 (312)
Q Consensus        15 ~~~n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~--~~~--------~v~giDis~~~i~~a~~r~~~~~~~~~~   83 (312)
                      -++..+...|+..- ..++..|||--||+|..+...+..  ...        .++|.|+++.+++.|+++.+..+....+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            34555555555543 347789999999999877654432  222        3899999999999999999887766678


Q ss_pred             EEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCC----HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        84 ~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .+.+.|+...++      .++++|+|++.-..-.-..+    ..-...+++++.++|++ ..++++..+
T Consensus        91 ~~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~  152 (179)
T PF01170_consen   91 DFIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN  152 (179)
T ss_dssp             EEEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred             EEEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence            999999987664      46899999997654322232    23346678899999999 444444433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.71  E-value=1.6e-07  Score=85.26  Aligned_cols=121  Identities=18%  Similarity=0.226  Sum_probs=84.9

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +..+. ++.+|||+-|=+|+.....+..+..+|++||.|..+++.|++++.-++.. .+++|++.|+.+.  ...+. ..
T Consensus       118 v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~--l~~~~-~~  193 (286)
T PF10672_consen  118 VRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF--LKRLK-KG  193 (286)
T ss_dssp             HHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH--HHHHH-HT
T ss_pred             HHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH--HHHHh-cC
Confidence            33444 47899999999999998877778889999999999999999999888753 4689999998652  12222 34


Q ss_pred             CceeEEEeccc-h-hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQH-L-QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~-l-h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++||+|++--. + .-.+.-..+...++..+.++|+|||.++.++...
T Consensus       194 ~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  194 GRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             T-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            79999998322 0 1112224566788999999999999998775544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.70  E-value=1.1e-07  Score=87.58  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEE-cCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~-~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++.+|||||||+|.....+... ...+++|+||++.+++.|++..+.+ +...++.+.. .|...  +...+..+.+.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence            4579999999999665555433 4569999999999999999999887 5555566654 23221  1111111356899


Q ss_pred             EEEeccchhh
Q 021467          108 LVCCFQHLQM  117 (312)
Q Consensus       108 ~V~~~~~lh~  117 (312)
                      +|+|+-.+|-
T Consensus       192 livcNPPf~~  201 (321)
T PRK11727        192 ATLCNPPFHA  201 (321)
T ss_pred             EEEeCCCCcC
Confidence            9999988775

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.69  E-value=2.5e-07  Score=83.95  Aligned_cols=86  Identities=10%  Similarity=0.040  Sum_probs=63.3

Q ss_pred             HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      +...+++.. ..++.+|||+|||+|..+..++.... +|+|+|++++|++.++++...    .+++++++|+...++   
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~---  101 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDL---  101 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCH---
Confidence            333444433 34778999999999988887777654 999999999999999987743    238999999988665   


Q ss_pred             hhhcCCceeEEEeccchh
Q 021467           99 MQEKANQADLVCCFQHLQ  116 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh  116 (312)
                         ++..+|.|+++...+
T Consensus       102 ---~~~~~~~vv~NlPY~  116 (272)
T PRK00274        102 ---SELQPLKVVANLPYN  116 (272)
T ss_pred             ---HHcCcceEEEeCCcc
Confidence               211258888776543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.69  E-value=2e-07  Score=85.71  Aligned_cols=111  Identities=21%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.+|..|||-=||||+.+......+. +++|.|++..|++-|+.+++..+... ..+... |+...++      ++.++|
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl------~~~~vd  266 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPL------RDNSVD  266 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCC------CCCccc
Confidence            45788999999999998887655455 99999999999999999988765221 333444 9988887      456799


Q ss_pred             EEEeccchhhh----cCC-HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~----~~~-~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      .|.+-...--.    -.. .+-..++|+.++++||+||++++..|
T Consensus       267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            99985432211    011 35578999999999999999999988

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.66  E-value=2e-07  Score=81.15  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=81.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~-~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...+||+||.+.|..+..++.. + ..+++.+|+++++.+.|++.++..+...++..+. +|..+. +. .  ...++||
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~--~~~~~fD  134 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-R--LLDGSFD  134 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-h--ccCCCcc
Confidence            5689999999999655555444 3 4689999999999999999999988777788888 465431 11 0  1368999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+.-..       ..+...++..+.++|+|||.+++-
T Consensus       135 liFIDad-------K~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         135 LVFIDAD-------KADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             EEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence            9987663       445688999999999999999987

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.65  E-value=1.6e-07  Score=79.98  Aligned_cols=113  Identities=13%  Similarity=0.082  Sum_probs=79.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+||||-||+|......+.++..+++.||.++.++...+++.+..+...++..+..|+...-  ........+||+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l--~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL--LKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH--HHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH--HhhcccCCCceEEE
Confidence            6899999999999888888888999999999999999999999987665556888888864421  11211358999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~~  149 (312)
                      +--....  .  .....++..+.  .+|+++|.+++-....
T Consensus       120 lDPPY~~--~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  120 LDPPYAK--G--LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             E--STTS--C--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ECCCccc--c--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8775544  2  11355666666  8999999999886554

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.63  E-value=4.1e-07  Score=81.88  Aligned_cols=85  Identities=14%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 021467           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      ...+++.. ..++.+|||+|||+|..+..++.. ..+++|+|+++.+++.++++....   .+++++++|+...++    
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~----   89 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL----   89 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc----
Confidence            33444433 346789999999999888877766 458999999999999999887542   248999999987554    


Q ss_pred             hhcCCceeEEEeccchhh
Q 021467          100 QEKANQADLVCCFQHLQM  117 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~  117 (312)
                          ..||.|+++...+.
T Consensus        90 ----~~~d~Vv~NlPy~i  103 (258)
T PRK14896         90 ----PEFNKVVSNLPYQI  103 (258)
T ss_pred             ----hhceEEEEcCCccc
Confidence                34899999876553

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.63  E-value=1.6e-07  Score=85.98  Aligned_cols=80  Identities=20%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..++.. ..+++|+|+++.+++.+++++...+...+++++++|+...++        ..||+
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--------~~~d~  104 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--------PYFDV  104 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--------cccCE
Confidence            457889999999999877776655 458999999999999999998754433458999999977543        46899


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+++...+.
T Consensus       105 VvaNlPY~I  113 (294)
T PTZ00338        105 CVANVPYQI  113 (294)
T ss_pred             EEecCCccc
Confidence            988766554

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.63  E-value=5.8e-07  Score=80.60  Aligned_cols=88  Identities=11%  Similarity=-0.007  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        18 n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      ..+...+++.. ..++.+|||+|||+|..+..++... ..++++|+++.+++.++++....   .++.++++|+...++ 
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~-   89 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDL-   89 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCCh-
Confidence            33444444443 3467899999999998887776655 47999999999999999877432   238899999987665 


Q ss_pred             hhhhhcCCcee---EEEeccchhh
Q 021467           97 TQMQEKANQAD---LVCCFQHLQM  117 (312)
Q Consensus        97 ~~~~~~~~~fD---~V~~~~~lh~  117 (312)
                             ..+|   +|+++...|.
T Consensus        90 -------~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        90 -------PDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             -------hHcCCcceEEEcCChhh
Confidence                   1355   7777776554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.62  E-value=4e-07  Score=82.47  Aligned_cols=105  Identities=13%  Similarity=0.075  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+..|||+|||+|......+.++..+|++++.| +|.+.|++..+.++...++..+.+.+.+..+       +++.|+|+
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI  248 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII  248 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence            567899999999955555556688999999987 6889999999888777789999998887666       47899988


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +-- +.|++.++.-++..+- .++.|+|.|.++=|
T Consensus       249 SEP-MG~mL~NERMLEsYl~-Ark~l~P~GkMfPT  281 (517)
T KOG1500|consen  249 SEP-MGYMLVNERMLESYLH-ARKWLKPNGKMFPT  281 (517)
T ss_pred             ecc-chhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence            643 5566666665655554 56999999998766

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.61  E-value=2.9e-07  Score=88.89  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=77.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.|+++...++. .+++|+++|+.+. + ..+...+.+||+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~-l-~~~~~~~~~~D~v  366 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV-L-PKQPWAGQIPDVL  366 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence            45689999999999887776654 45899999999999999999876653 3589999998542 1 1111124579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      ++.-.---      ....+++.+.+ ++|+++++++ .|...+...+
T Consensus       367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvs-c~p~tlard~  405 (431)
T TIGR00479       367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVS-CNPATLARDL  405 (431)
T ss_pred             EECcCCCC------CCHHHHHHHHh-cCCCEEEEEc-CCHHHHHHHH
Confidence            87553110      02344555443 8898877665 4555554433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.58  E-value=2.4e-07  Score=81.51  Aligned_cols=97  Identities=13%  Similarity=0.056  Sum_probs=62.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|+.+..++..+..+|+|+|+++.|+...   ...+..  -..+...|+......+.. ..-..+|+++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~~--v~~~~~~ni~~~~~~~~~-~d~~~~Dvsf  148 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDER--VKVLERTNIRYVTPADIF-PDFATFDVSF  148 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCCC--eeEeecCCcccCCHhHcC-CCceeeeEEE
Confidence            6779999999999988888887778999999999988762   221111  012333444432221111 0123577665


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..            ...+.++.++|+| |.++..+
T Consensus       149 iS~------------~~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       149 ISL------------ISILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             eeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence            444            2248899999999 8777664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.58  E-value=3e-07  Score=80.60  Aligned_cols=87  Identities=14%  Similarity=0.225  Sum_probs=66.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +....|.|+|||.+..+.    .....|+.+|+-+.           +     -+.+.+|+...++      .+++.|++
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------~-----~~V~~cDm~~vPl------~d~svDva  232 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------N-----ERVIACDMRNVPL------EDESVDVA  232 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeecC-----------C-----CceeeccccCCcC------ccCcccEE
Confidence            466789999999984433    34457999998642           1     3468899999888      78999998


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++..+|.-     .++..+++++.|+|++||.+.+.-.
T Consensus       233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEeh
Confidence            77665432     3478899999999999999998833

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.57  E-value=6.6e-07  Score=79.71  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=80.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh---cCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~---~~~~  105 (312)
                      +..+||+||++.|..+..++..  ...+++.+|++++..+.|++.++..+...+++++.+|+.+. + ..+..   ..++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L-~~l~~~~~~~~~  156 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-L-DQMIEDGKYHGT  156 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-H-HHHHhccccCCc
Confidence            4569999999999666655543  34699999999999999999999887767899999987552 1 11111   1368


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|++-..       .......+..+.++|+|||.+++-
T Consensus       157 fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        157 FDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             ccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            999987653       344677788888999999998865

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.57  E-value=5.9e-07  Score=85.13  Aligned_cols=111  Identities=16%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|.+...++..+ .+++|+|+++.+++.|+++.+.++.. +++|+++|+.+...  .   ...+||+|+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~--~---~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFAT--A---QMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHH--h---cCCCCCEEE
Confidence            46799999999998777776544 68999999999999999998876643 58999999854211  0   124699998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      +.-.-.-  .    ...+++.+. .++|++++++++ |...+.+-+
T Consensus       306 ~DPPr~G--~----~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl  343 (374)
T TIGR02085       306 VNPPRRG--I----GKELCDYLS-QMAPKFILYSSC-NAQTMAKDI  343 (374)
T ss_pred             ECCCCCC--C----cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHH
Confidence            8764211  1    233444443 378988777764 555555444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04148 hypothetical protein; Provisional

Probab=98.55  E-value=7.7e-07  Score=71.46  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||.|. .+..+. .....|+|+|+++..++.|+++.        ++++++|+++.++.     .-..+|+|
T Consensus        16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~-----~y~~a~li   81 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE-----IYKNAKLI   81 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-----HHhcCCEE
Confidence            45789999999996 444554 44459999999999998887763        67899999987663     24679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .+.-       ...++...+.++++.+.  .-+++..-.
T Consensus        82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~  111 (134)
T PRK04148         82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLS  111 (134)
T ss_pred             EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence            7554       23445555666666554  445555333

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=2e-07  Score=74.75  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=60.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+..++|||||.|.........+...++|+||++++++.++++..+..  .++.+.++|+.+..+      ..+.||.++
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav  119 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV  119 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence            688999999999954434444467789999999999999999887653  346889999988665      458999998


Q ss_pred             eccc
Q 021467          111 CFQH  114 (312)
Q Consensus       111 ~~~~  114 (312)
                      .+..
T Consensus       120 iNpp  123 (185)
T KOG3420|consen  120 INPP  123 (185)
T ss_pred             ecCC
Confidence            8764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.54  E-value=9.3e-07  Score=83.77  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=79.6

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +.+|||++||+|.....++.. +..+|+++|+++.+++.++++.+.++.. .+.+.++|+... +    . ....||+|.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~-l----~-~~~~fD~V~  130 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANAL-L----H-EERKFDVVD  130 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHH-H----h-hcCCCCEEE
Confidence            468999999999888877654 5568999999999999999998776532 356788887431 1    1 135799998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      +.- .    .+   ...++....+.+++||++.++.-|...+..
T Consensus       131 lDP-~----Gs---~~~~l~~al~~~~~~gilyvSAtD~~~L~g  166 (382)
T PRK04338        131 IDP-F----GS---PAPFLDSAIRSVKRGGLLCVTATDTAPLCG  166 (382)
T ss_pred             ECC-C----CC---cHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence            753 1    11   345677767788999999999777765533

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.49  E-value=4.8e-07  Score=77.48  Aligned_cols=91  Identities=14%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++...|.|+|||.+..+... . ....|...|+-+.           +     -..+.+|+...|+      ++++.|++
T Consensus        71 ~~~~viaD~GCGdA~la~~~-~-~~~~V~SfDLva~-----------n-----~~Vtacdia~vPL------~~~svDv~  126 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAV-P-NKHKVHSFDLVAP-----------N-----PRVTACDIANVPL------EDESVDVA  126 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------S-----TTEEES-TTS-S--------TT-EEEE
T ss_pred             CCCEEEEECCCchHHHHHhc-c-cCceEEEeeccCC-----------C-----CCEEEecCccCcC------CCCceeEE
Confidence            35679999999999555332 2 2237999999642           1     1267899999888      78999998


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++..+|-.     .+...+++++.|+|||||.+.+.-..+
T Consensus       127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~S  161 (219)
T PF05148_consen  127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKS  161 (219)
T ss_dssp             EEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEecc
Confidence            88776543     246789999999999999999984433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02823 spermine synthase

Probab=98.49  E-value=1.6e-06  Score=80.66  Aligned_cols=111  Identities=16%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ...+||.||+|.|+.+..+++. +..+++.+|+++++++.|++.+....   ...+++++.+|....     +....++|
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L~~~~~~y  177 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----LEKRDEKF  177 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----HhhCCCCc
Confidence            4578999999999888777765 46789999999999999998875321   124588899987652     12235789


Q ss_pred             eEEEeccchhh--hcCCHHHHHHHHH-HHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQM--CFETEERARRLLQ-NVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~--~~~~~~~~~~~l~-~i~~~LkpGG~~i~~~  146 (312)
                      |+|++-..=..  .....---.++++ .+.+.|+|||+++...
T Consensus       178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            99998632100  0000001356787 8999999999998763

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.48  E-value=1.2e-06  Score=80.40  Aligned_cols=97  Identities=19%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      -...+|+|.|.|+.+..++. .+.++.|++.....+..++..+. .+    ++.+.+|.... .        .+-|+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--------P~~daI~m  242 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--------PKGDAIWM  242 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--------CCcCeEEE
Confidence            37899999999988888777 66689999999999998888885 44    77888998875 3        34569999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++.+|+  .+.++...+|+|+.+.|+|||.+++.
T Consensus       243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~  274 (342)
T KOG3178|consen  243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV  274 (342)
T ss_pred             Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence            999999  88999999999999999999999987

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.46  E-value=3.7e-07  Score=78.73  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=73.5

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .....++..|||+.||-|.++...++ .+...|+++|+++.+++.+++..+.++....+..+++|+....       ...
T Consensus        96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~  168 (200)
T PF02475_consen   96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEG  168 (200)
T ss_dssp             HTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT
T ss_pred             HhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Ccc
Confidence            34466899999999999999998876 3566899999999999999999998877777899999986633       257


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      .||-|++...-+        ...+|..+.+++++||++-
T Consensus       169 ~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  169 KFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred             ccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence            899998876322        3456888888999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.45  E-value=3e-06  Score=69.81  Aligned_cols=107  Identities=16%  Similarity=0.093  Sum_probs=84.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+.-||++|.|+|....+++..  ....++.++.|++......+++..      +.++.+|+.+....... .+...||.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e-~~gq~~D~  120 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGE-HKGQFFDS  120 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhh-cCCCeeee
Confidence            5678999999999988888877  456899999999999999999876      55889998775421111 14578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|.-.+..  .......+.++.+...|++||.++-.+
T Consensus       121 viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         121 VISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             EEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            999776655  456667889999999999999998663

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.39  E-value=4e-06  Score=79.97  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=101.2

Q ss_pred             CCCcchHHhHHHHHH-HHHHHHhcCCCC-EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 021467            7 PRSELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE   84 (312)
Q Consensus         7 ~R~~~~~~~~~n~vk-~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~   84 (312)
                      +|...+...+-.|+. +..|..+..+.. ++|-+|||+-.....+.+.+...++.+|+|+..++....+....  .....
T Consensus        22 ~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~   99 (482)
T KOG2352|consen   22 PRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQ   99 (482)
T ss_pred             ccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceE
Confidence            344344444444432 345555666666 99999999998777777778999999999999999988887522  23478


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHH------HHHHHHHHHHhccCCCcEEEEEec
Q 021467           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~------~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +...|+....+      ++.+||+|+.-..++..+.++.      .....+.+++++|++||+++..+.
T Consensus       100 ~~~~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  100 MVEMDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             EEEecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            88999988888      7899999999999988776654      345789999999999999886633

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.38  E-value=2.1e-06  Score=84.41  Aligned_cols=117  Identities=14%  Similarity=0.080  Sum_probs=86.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+..+||||||.|..+..++.. +...++|+|++...+..|.++....+. .++.+++.|+..  +...+  +++++|.|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i  421 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI  421 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence            4678999999999999888876 556899999999999998888766543 346677766432  11122  46889999


Q ss_pred             Eeccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          110 CCFQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       110 ~~~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      .+.|.=      |+  ...--...+++.+++.|||||.+.+.|-+.+....
T Consensus       422 ~i~FPDPWpKkrh~--krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~  470 (506)
T PRK01544        422 YILFPDPWIKNKQK--KKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE  470 (506)
T ss_pred             EEECCCCCCCCCCc--cccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence            998862      22  22223478899999999999999988777655433

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.37  E-value=4.6e-06  Score=80.95  Aligned_cols=114  Identities=12%  Similarity=0.037  Sum_probs=81.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||.|+=+..++..  ....+++.|+++.-++..+++++..+. ..+.....|.....-  .   ....||
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~--~---~~~~fD  185 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA--A---LPETFD  185 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh--h---chhhcC
Confidence            48899999999999977777654  345899999999999999999887653 236777778654221  1   235799


Q ss_pred             EEEe----ccc--hhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~----~~~--lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|++    +..  ++.-     ..+.       ....++|.++.++|||||+++-+|..-
T Consensus       186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            9984    321  1110     0111       234788999999999999999886553

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.36  E-value=1.8e-06  Score=79.67  Aligned_cols=115  Identities=19%  Similarity=0.181  Sum_probs=74.5

Q ss_pred             CCCEEEEECCCCCccHHHHHH--------cCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhh
Q 021467           31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~--------~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++.+|||.+||+|+++.....        ....+++|+|+++.++..|+-+..-.+... ...+..+|....+...    
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----  121 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI----  121 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence            566899999999998876654        245689999999999999987764333211 1357788876544311    


Q ss_pred             cCCceeEEEeccchhhh------cC-----------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          102 KANQADLVCCFQHLQMC------FE-----------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~------~~-----------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ....||+|+++-.+-..      ..           ....--.++..+.+.|++||++.+.+|++
T Consensus       122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG  186 (311)
T ss_dssp             ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred             cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence            24789999996543221      00           01112348899999999999999998876

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.34  E-value=5.5e-07  Score=80.21  Aligned_cols=98  Identities=24%  Similarity=0.334  Sum_probs=79.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+..+||+|||.|-.+..   .+...++|.|++...+.-|++.-.       .....+|+...+.      .+.+||.++
T Consensus        45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~l  108 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAAL  108 (293)
T ss_pred             CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccch
Confidence            578999999999943322   144579999999988877765432       1456788888777      678999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +..++|| +.+......+++++.++|||||..++.
T Consensus       109 siavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen  109 SIAVIHH-LSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             hhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence            9999998 788999999999999999999998777

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.34  E-value=8.4e-06  Score=64.88  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=69.3

Q ss_pred             EEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--CchhhhhhhcC-CceeEE
Q 021467           35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV  109 (312)
Q Consensus        35 VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~~~-~~fD~V  109 (312)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++..... .....+.+...|...  .++      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999643 2222222  3799999999999985555432 211115677777665  343      33 489999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                       +....++...    ....+.++.+.|+|+|.+++.....
T Consensus       124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence             5544333222    7888999999999999999886654

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.5e-06  Score=72.74  Aligned_cols=103  Identities=19%  Similarity=0.125  Sum_probs=75.9

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcC---------CCceEEEEEcCCCCCc
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAEN   94 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~---------~~~~~~f~~~D~~~~~   94 (312)
                      ..+.|+.+.||+|.|+|....-+..   ..+...+|||.-++.++.+++++...-         ...+..++++|+....
T Consensus        78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~  157 (237)
T KOG1661|consen   78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY  157 (237)
T ss_pred             HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence            3456899999999999965544432   234455999999999999998875421         1234788899987754


Q ss_pred             hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .      +..+||.|.|..+          ..+..+++...|+|||.+++-
T Consensus       158 ~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  158 A------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             C------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence            4      5689999999864          334566777799999999876

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=82.12  Aligned_cols=117  Identities=20%  Similarity=0.173  Sum_probs=91.7

Q ss_pred             HHHHHHHH---HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           19 FAKTALIK---IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        19 ~vk~~li~---~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      |++...+.   .-+.++..++|+|||-|+.......-+...++|+|.++..+.++...........+..++.+|+...++
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f  174 (364)
T KOG1269|consen   95 WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF  174 (364)
T ss_pred             HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC
Confidence            55543333   334477789999999998888777667779999999999988887765544333345668888888777


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                            +++.||.+.+..+..|    ..+...+++++.++++|||+++.-
T Consensus       175 ------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  175 ------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             ------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence                  6899999999887666    666889999999999999999875

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.28  E-value=8.3e-07  Score=75.39  Aligned_cols=116  Identities=18%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~  104 (312)
                      ++.+||||||++||.+..++...  ..+|+|+|+.+.         ...   ..+.++++|+.+......    +.....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhcccccc
Confidence            34899999999999988887765  579999999976         110   126677777765322221    211236


Q ss_pred             ceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHHHHH
Q 021467          105 QADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (312)
Q Consensus       105 ~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~~~~  158 (312)
                      ++|+|+|-.+....       +.+.......+.-+.+.|+|||.|++-+-..   ..+...+..
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~  154 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR  154 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence            99999997732211       1223334555566667899999999875333   345444443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=1.2e-05  Score=69.62  Aligned_cols=107  Identities=10%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD  107 (312)
                      ...++||||.=+|..+..|+.+  ..++|+++|++++..+.+.+.++..+...++.++++++.+ .+.+-++. ..++||
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD  151 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD  151 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence            4579999999999888877765  4569999999999999998888877777789999998765 23222221 358999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .++.-.-       .........++.++||+||.+++.
T Consensus       152 faFvDad-------K~nY~~y~e~~l~Llr~GGvi~~D  182 (237)
T KOG1663|consen  152 FAFVDAD-------KDNYSNYYERLLRLLRVGGVIVVD  182 (237)
T ss_pred             EEEEccc-------hHHHHHHHHHHHhhcccccEEEEe
Confidence            9986542       333458889999999999999976

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.27  E-value=6e-06  Score=77.94  Aligned_cols=111  Identities=10%  Similarity=0.073  Sum_probs=72.3

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh----------
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----------  101 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~----------  101 (312)
                      +.+|||++||+|.....++. +..+|+|+|+++.+++.|+++...++.. +++|+++|+.+. + ..+..          
T Consensus       207 ~~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~-l-~~~~~~~~~~~~~~~  282 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF-T-QAMNGVREFNRLKGI  282 (362)
T ss_pred             CCeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-H-HHHhhcccccccccc
Confidence            35799999999988886654 4569999999999999999998776542 589999998542 1 11110          


Q ss_pred             --cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          102 --KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       102 --~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                        ...+||+|+.--. ..  .   -...+++.+.+   |+++++++ .|...+.+-+
T Consensus       283 ~~~~~~~D~v~lDPP-R~--G---~~~~~l~~l~~---~~~ivyvS-C~p~tlarDl  329 (362)
T PRK05031        283 DLKSYNFSTIFVDPP-RA--G---LDDETLKLVQA---YERILYIS-CNPETLCENL  329 (362)
T ss_pred             cccCCCCCEEEECCC-CC--C---CcHHHHHHHHc---cCCEEEEE-eCHHHHHHHH
Confidence              0125899987654 11  1   12344444443   66666665 4445554434

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.27  E-value=4.1e-05  Score=68.86  Aligned_cols=120  Identities=16%  Similarity=0.159  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHhcC-----CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCce------
Q 021467           16 LYEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFI------   82 (312)
Q Consensus        16 ~~n~vk~~li~~~~~-----~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~--~~~~~------   82 (312)
                      .+.+|...|-+.+..     ...+||--|||-|+.+..++..+. .+.|.|.|--|+-..+-.+...  ...+.      
T Consensus        36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~  114 (270)
T PF07942_consen   36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH  114 (270)
T ss_pred             HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence            345566666555442     357999999999999999988877 8999999999986554433210  00111      


Q ss_pred             -------------------------------EEEEEcCCCCCchhhhhhhc--CCceeEEEeccchhhhcCCHHHHHHHH
Q 021467           83 -------------------------------AEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLL  129 (312)
Q Consensus        83 -------------------------------~~f~~~D~~~~~~~~~~~~~--~~~fD~V~~~~~lh~~~~~~~~~~~~l  129 (312)
                                                     .....+|..+     .....  .++||+|+..|    ..++...+-..+
T Consensus       115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi  185 (270)
T PF07942_consen  115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYI  185 (270)
T ss_pred             cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHH
Confidence                                           1111222111     11111  37999988877    567788899999


Q ss_pred             HHHHhccCCCcEEEEE
Q 021467          130 QNVSSLLKPGGYFLGI  145 (312)
Q Consensus       130 ~~i~~~LkpGG~~i~~  145 (312)
                      +.|.++|||||+.|=.
T Consensus       186 ~tI~~lLkpgG~WIN~  201 (270)
T PF07942_consen  186 ETIEHLLKPGGYWINF  201 (270)
T ss_pred             HHHHHHhccCCEEEec
Confidence            9999999999976643

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.25  E-value=4.9e-06  Score=71.71  Aligned_cols=117  Identities=14%  Similarity=0.185  Sum_probs=83.4

Q ss_pred             chHHhHHHHHHHHHHHHhcC-CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467           11 LTHHRLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (312)
Q Consensus        11 ~~~~~~~n~vk~~li~~~~~-~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D   89 (312)
                      ...+-+..|++......... ...++|||||=+......  ..+.-.|+.||+.+.          .      -.+.+.|
T Consensus        30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~------~~I~qqD   91 (219)
T PF11968_consen   30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------H------PGILQQD   91 (219)
T ss_pred             chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------C------CCceeec
Confidence            34555778877766543322 347999999975532221  234446999999862          1      2245667


Q ss_pred             CCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcE-----EEEEecCh
Q 021467           90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDS  149 (312)
Q Consensus        90 ~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~-----~i~~~p~~  149 (312)
                      ..+.++..   ...++||+|+|..++.| ..+..+.-++++.+++.|+|+|.     ++++.|.+
T Consensus        92 Fm~rplp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen   92 FMERPLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             cccCCCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            66655421   13579999999999998 56788899999999999999999     99998887

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.25  E-value=1.5e-05  Score=81.50  Aligned_cols=130  Identities=16%  Similarity=0.083  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHh-c-CCCCEEEEECCCCCccHHHHHHc------------------------------------------
Q 021467           17 YEFAKTALIKIY-S-HPYVTVCDLYCGAGVDVDKWETA------------------------------------------   52 (312)
Q Consensus        17 ~n~vk~~li~~~-~-~~~~~VLDlGCG~G~~l~~~~~~------------------------------------------   52 (312)
                      +.-+...++... . .++..++|.+||+|..+...+..                                          
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            334444444432 2 46789999999999877544321                                          


Q ss_pred             -CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 021467           53 -LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN  131 (312)
Q Consensus        53 -~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~  131 (312)
                       ...+++|+|+++.+++.|+.+....+....+.+.++|+.+.....    ..++||+|+++-..-.-..+..+...+.+.
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~  329 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYGERLGEEPALIALYSQ  329 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence             012699999999999999999998876666899999987754310    235799999986644333445555556555


Q ss_pred             HHhccC---CCcEEEEEecChh
Q 021467          132 VSSLLK---PGGYFLGITPDSS  150 (312)
Q Consensus       132 i~~~Lk---pGG~~i~~~p~~~  150 (312)
                      +.+.||   +|+.+.+.+++..
T Consensus       330 lg~~lk~~~~g~~~~llt~~~~  351 (702)
T PRK11783        330 LGRRLKQQFGGWNAALFSSSPE  351 (702)
T ss_pred             HHHHHHHhCCCCeEEEEeCCHH
Confidence            555554   8999988888764

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.23  E-value=5.8e-06  Score=78.06  Aligned_cols=106  Identities=9%  Similarity=0.158  Sum_probs=80.7

Q ss_pred             CEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+|||+.||+|.....++..  +..+|+++|+++++++.++++.+.++.. ++++++.|+...-     .....+||+|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l-----~~~~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL-----RYRNRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHH-----HHhCCCCCEEE
Confidence            68999999999888888776  5679999999999999999999776532 4678888865421     11236799998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      .-- ...       ...++..+.+.+++||.+.+|.-|...+
T Consensus       120 lDP-fGs-------~~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       120 IDP-FGT-------PAPFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             eCC-CCC-------cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence            744 221       3468888889999999999996665443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.22  E-value=1.3e-05  Score=75.39  Aligned_cols=112  Identities=10%  Similarity=0.056  Sum_probs=71.7

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh------hc---
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ------EK---  102 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~------~~---  102 (312)
                      +.+|||++||+|.....+... ..+|+|+|++++|++.|+++...++.. +++|+++|+.+.. .....      ..   
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~-~~~~~~~~~~~~~~~~  274 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFT-QAMNGVREFRRLKGID  274 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHH-HHHhhccccccccccc
Confidence            347999999999877765544 469999999999999999998877542 4889999985421 10000      00   


Q ss_pred             --CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       103 --~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                        ...||+|+.--. +.  .   -...+++.+.+   |+++++++ .|...+.+-+
T Consensus       275 ~~~~~~d~v~lDPP-R~--G---~~~~~l~~l~~---~~~ivYvs-C~p~tlaRDl  320 (353)
T TIGR02143       275 LKSYNCSTIFVDPP-RA--G---LDPDTCKLVQA---YERILYIS-CNPETLKANL  320 (353)
T ss_pred             cccCCCCEEEECCC-CC--C---CcHHHHHHHHc---CCcEEEEE-cCHHHHHHHH
Confidence              124899987654 22  1   12344444443   66666655 5555555444

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.21  E-value=1.2e-05  Score=79.74  Aligned_cols=117  Identities=14%  Similarity=0.104  Sum_probs=74.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC---------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~---------~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ...+|||.|||+|+.+.......         ...++|+|+++.++..|+.++...+ ...+...+.|.....+.. ...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence            34699999999999887665431         1478999999999999998876543 122444555533322100 001


Q ss_pred             cCCceeEEEeccchhhh-cCCHH-----------------------------------------HHHHH-HHHHHhccCC
Q 021467          102 KANQADLVCCFQHLQMC-FETEE-----------------------------------------RARRL-LQNVSSLLKP  138 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~-~~~~~-----------------------------------------~~~~~-l~~i~~~Lkp  138 (312)
                      ..+.||+|+++-..--. ....+                                         ....+ +..+.++|++
T Consensus       109 ~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~  188 (524)
T TIGR02987       109 YLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANK  188 (524)
T ss_pred             ccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCC
Confidence            23589999997653210 01000                                         01113 3567899999


Q ss_pred             CcEEEEEecCh
Q 021467          139 GGYFLGITPDS  149 (312)
Q Consensus       139 GG~~i~~~p~~  149 (312)
                      ||++.+++|++
T Consensus       189 ~G~~~~I~P~s  199 (524)
T TIGR02987       189 NGYVSIISPAS  199 (524)
T ss_pred             CCEEEEEEChH
Confidence            99999998887

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.20  E-value=1.6e-06  Score=75.05  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHH-HHhcCCCceEEEEEcCCCCC--chhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT-WENQRKNFIAEFFEADPCAE--NFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r-~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~~~fD  107 (312)
                      .+.+|||.|.|-|..+...+.++..+|+-++.++..|+.|.-+ +...-....++.+.+|+.+.  ++      .+.+||
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~------~D~sfD  207 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF------DDESFD  207 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC------Cccccc
Confidence            5899999999999888888888887999999999999988654 21111122478899998652  23      578999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +|+---. +.+.-++--.+++.+++.|+|||||.++=-+
T Consensus       208 aIiHDPP-RfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         208 AIIHDPP-RFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             eEeeCCC-ccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            9975322 1122334446889999999999999998543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.19  E-value=8.1e-06  Score=74.49  Aligned_cols=80  Identities=16%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++..+||.+||.|+++..++...  ..+|+|+|.+++|++.|+++...   ..++.++++|..+..  ..+...-.++|
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~--~~l~~~~~~vD   92 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK--EVLAEGLGKVD   92 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH--HHHHcCCCccC
Confidence            477899999999999999998773  46999999999999999998755   235889999876632  22221112799


Q ss_pred             EEEeccc
Q 021467          108 LVCCFQH  114 (312)
Q Consensus       108 ~V~~~~~  114 (312)
                      .|++..+
T Consensus        93 gIl~DLG   99 (296)
T PRK00050         93 GILLDLG   99 (296)
T ss_pred             EEEECCC
Confidence            9988654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.16  E-value=5e-05  Score=64.34  Aligned_cols=113  Identities=15%  Similarity=0.062  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.++||+-+|+|......+.++...++.+|.+..++...+++.+..+...++.++..|+..  +...+. ...+||+|.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~L~~~~-~~~~FDlVf  119 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--ALKQLG-TREPFDLVF  119 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--HHHhcC-CCCcccEEE
Confidence            58999999999998888888888999999999999999999998877655668888988862  211111 123599999


Q ss_pred             eccchhhhcCCHHHHHHHHHH--HHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~--i~~~LkpGG~~i~~~p~~  149 (312)
                      .--..+.  .-.+ ....+..  -..+|+|||.+++-....
T Consensus       120 lDPPy~~--~l~~-~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         120 LDPPYAK--GLLD-KELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             eCCCCcc--chhh-HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            9877663  2121 1222222  457899999999875543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.16  E-value=6.7e-06  Score=73.44  Aligned_cols=113  Identities=12%  Similarity=0.039  Sum_probs=76.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .+...+||=||-|.|+.+..+++.. ..+++++||++..++.|++-+....   ...+++++.+|....     +.....
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-----l~~~~~  148 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-----LKETQE  148 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-----HHTSSS
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-----HHhccC
Confidence            3457899999999998888887664 6799999999999999998765421   123588888887441     221234


Q ss_pred             -ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 -~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                       +||+|++-..--......--.+.+++.+.++|+|||+++...
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence             899998733210000000114788999999999999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.15  E-value=1.9e-05  Score=70.81  Aligned_cols=98  Identities=10%  Similarity=0.005  Sum_probs=72.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +...+||=+|.|.|+.++..++.+. +|+.+||++++++.|++-++...   ...+++++.. +.        ....++|
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--------~~~~~~f  140 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--------DLDIKKY  140 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--------hccCCcC
Confidence            3558999999999999999988764 99999999999999999554321   1123554431 10        1123789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++-..    +     -..+.+.+.++|+|||+++...
T Consensus       141 DVIIvDs~----~-----~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        141 DLIICLQE----P-----DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CEEEEcCC----C-----ChHHHHHHHHhcCCCcEEEECC
Confidence            99997642    1     2567899999999999999863

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.14  E-value=1.6e-05  Score=72.06  Aligned_cols=109  Identities=12%  Similarity=0.073  Sum_probs=79.1

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--C-CceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--~-~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+||-||-|.|+.+...++. ...+++.+||++..++.|++.+....  . ..+++.+..|....     +.....+||+
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-----v~~~~~~fDv  152 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-----LRDCEEKFDV  152 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-----HHhCCCcCCE
Confidence            59999999999999988877 46899999999999999999876533  1 24577777776441     2223458999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |++-..=.-.-...---..+++.+.++|+++|+++...
T Consensus       153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            99754211000000013789999999999999999883

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.13  E-value=1.4e-06  Score=83.27  Aligned_cols=102  Identities=23%  Similarity=0.215  Sum_probs=63.5

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEE---eCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~gi---Dis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..+||+|||.|.+...++..+.. ...+   |..+..++.|-+|-      ..+-+-..-....++      +++.||+|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s~rLPf------p~~~fDmv  185 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERG------VPAMIGVLGSQRLPF------PSNAFDMV  185 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcC------cchhhhhhccccccC------Cccchhhh
Confidence            36999999999888877665542 2222   33334455554442      111111111122344      78999999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      .|.-++...  +.. -..+|-++.|+|||||+|+.+.|..+
T Consensus       186 Hcsrc~i~W--~~~-~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  186 HCSRCLIPW--HPN-DGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             hcccccccc--hhc-ccceeehhhhhhccCceEEecCCccc
Confidence            999875441  111 23578999999999999999966543

; GO: 0008168 methyltransferase activity

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.13  E-value=1.4e-05  Score=70.76  Aligned_cols=77  Identities=13%  Similarity=0.049  Sum_probs=65.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +++...||++|.|+|..+.+++.++. +|+++++++.|+.+..+|.+......+.+.+++|....++        ..||.
T Consensus        56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~  126 (315)
T KOG0820|consen   56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG  126 (315)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence            45889999999999988888877655 9999999999999999999887666679999999987654        56888


Q ss_pred             EEeccc
Q 021467          109 VCCFQH  114 (312)
Q Consensus       109 V~~~~~  114 (312)
                      ++++-.
T Consensus       127 cVsNlP  132 (315)
T KOG0820|consen  127 CVSNLP  132 (315)
T ss_pred             eeccCC
Confidence            887543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=3.9e-05  Score=64.18  Aligned_cols=110  Identities=18%  Similarity=0.272  Sum_probs=78.1

Q ss_pred             CCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..-+||||||+|.....+.+.  +...+.++||++.+++...+..+.++.  .++.+++|+.+.     +  ..++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-----l--~~~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-----L--RNESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-----h--ccCCccEE
Confidence            467999999999766665544  556799999999999998888876653  366777776552     2  23778877


Q ss_pred             Eeccch---------------hhh--cCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHL---------------QMC--FETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~l---------------h~~--~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +-+-..               -|+  -...+-...++..+-..|.|.|.|+.....++
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            654321               111  12344467888899999999999998865553

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.08  E-value=8.3e-06  Score=67.85  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      .|+|+.||-||++..+++. ..+|+++|+++..++.|+.+.+-.+...++.|+++|..+..-  .+. ....+|+|++.-
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~-~~~~~D~vFlSP   77 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLK-SNKIFDVVFLSP   77 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB-------SEEEE--
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hcc-ccccccEEEECC
Confidence            6999999999999999876 458999999999999999999887766679999999866211  111 011289998743

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.07  E-value=2.6e-05  Score=72.23  Aligned_cols=107  Identities=17%  Similarity=0.073  Sum_probs=87.6

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +.....+|.+|||+=+|-|.++...+..+...|+++|+++.+++..+++.+.|+....+..+++|+.....      ..+
T Consensus       182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~  255 (341)
T COG2520         182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELG  255 (341)
T ss_pred             HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccc
Confidence            33445579999999999999999988887666999999999999999999988877778999999977544      237


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|-|++...-        ....++....+.+++||++-.-
T Consensus       256 ~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy  288 (341)
T COG2520         256 VADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYY  288 (341)
T ss_pred             cCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEE
Confidence            89999877632        2456777888889999998766

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.05  E-value=6.2e-05  Score=65.24  Aligned_cols=109  Identities=21%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHh-------cC-CCceEEEEEcCCCCCchhhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~-------~~-~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      +.++...+|||||.|..+...+. .+..+.+||++.+...+.|....+.       .+ ...++++..+|..+.+....+
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~  119 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI  119 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence            45789999999999976654443 3677799999999988877653322       12 134688889998775542211


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                         -...|+|+++..   +|.  +++...|.+....||+|-++|-+
T Consensus       120 ---~s~AdvVf~Nn~---~F~--~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  120 ---WSDADVVFVNNT---CFD--PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             ---GHC-SEEEE--T---TT---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             ---hcCCCEEEEecc---ccC--HHHHHHHHHHHhcCCCCCEEEEC
Confidence               135799999874   332  33555667788889999887654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=0.0001  Score=63.34  Aligned_cols=119  Identities=17%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+|+|||+-.|+-+....+.  ....|+|+|+.+--         ..   ..+.++++|++..+....+..  ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~---~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PI---PGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence            458899999999999877766554  22359999998631         11   128999999998776544432  234


Q ss_pred             ceeEEEeccch--------hhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467          105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (312)
Q Consensus       105 ~fD~V~~~~~l--------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~  160 (312)
                      ++|+|++-.+-        ++ ..+..-...++.-+..+|+|||.|++-   .-+.+.+++.+++..
T Consensus       111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F  176 (205)
T COG0293         111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF  176 (205)
T ss_pred             CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence            57999985542        22 122344566677778899999999977   444466666666543

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.97  E-value=0.0001  Score=60.11  Aligned_cols=106  Identities=22%  Similarity=0.285  Sum_probs=68.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHH-----cCCCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhhhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~-----~~~~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+..+|+|+|||.|.....++.     ....+|+|+|.++..++.|.++.+....  .....+..++.....       .
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~   96 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S   96 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence            4678999999999976666666     4567999999999999999998876542  123455555443321       1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      ....++++   ++|-+ .+.  ...+++...+   ++-.+++..|....
T Consensus        97 ~~~~~~~v---gLHaC-G~L--s~~~l~~~~~---~~~~~l~~vpCCyh  136 (141)
T PF13679_consen   97 SDPPDILV---GLHAC-GDL--SDRALRLFIR---PNARFLVLVPCCYH  136 (141)
T ss_pred             cCCCeEEE---Eeecc-cch--HHHHHHHHHH---cCCCEEEEcCCccc
Confidence            35667776   45542 222  2334444444   66677777776643

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.97  E-value=6.4e-05  Score=68.22  Aligned_cols=119  Identities=16%  Similarity=0.133  Sum_probs=76.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ...+|||+|||.|.-+......  ...+++++|.|+.|++.++.-.+.......... ..+......      +....|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL  105 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL  105 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence            3469999999999544333221  466899999999999999887654321100101 111111000      1233499


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~  160 (312)
                      |++.++|-- +.+ .....+++++.+.+.+  +++++   +|.....+..++..+
T Consensus       106 vi~s~~L~E-L~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l  156 (274)
T PF09243_consen  106 VIASYVLNE-LPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL  156 (274)
T ss_pred             EEEehhhhc-CCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence            999999886 344 7788889988888876  77777   555566666666544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=0.00017  Score=67.85  Aligned_cols=124  Identities=17%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             HHHHHHhcC--CCCEEEEECCCCCccHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        22 ~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      |.+....+.  ++.+|||+|++.|+=+..++...   ...|+++|+++.-++..+++.+..+... +...+.|.....-.
T Consensus       145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~  223 (355)
T COG0144         145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAEL  223 (355)
T ss_pred             HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccc
Confidence            444444443  78999999999999777766552   3457999999999999999988776433 56677776542210


Q ss_pred             hhhhhcCCceeEEEeccc------hhhh-----cCC-------HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           97 TQMQEKANQADLVCCFQH------LQMC-----FET-------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~------lh~~-----~~~-------~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                        .. ...+||.|++-..      ++--     -.+       ..-+.++|.+..+.|||||.++-+|..-
T Consensus       224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             --cc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence              00 1236999987321      2100     011       1335788999999999999999886554

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.94  E-value=0.00013  Score=62.24  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCC-EEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           20 AKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        20 vk~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      +-+..+-.+++... +++|+|+|.|--...++-. +..+++.+|....-+.-.+.-....+.. +++.++..+.+ ..  
T Consensus        36 ~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~--  111 (184)
T PF02527_consen   36 LDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE--  111 (184)
T ss_dssp             HHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT--
T ss_pred             HHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc--
Confidence            33444445555444 8999999999543333322 5568999999998777666665554432 38888887765 11  


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~  149 (312)
                          ...+||+|++...-.        +..++.-+...|++||.++.. .++.
T Consensus       112 ----~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~  152 (184)
T PF02527_consen  112 ----YRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDA  152 (184)
T ss_dssp             ----TTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred             ----cCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence                468999999887322        567788899999999999977 4444

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.91  E-value=0.00027  Score=66.17  Aligned_cols=119  Identities=17%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCC---------------------------------C-------eEEEEeCChHHHH
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSGIG   68 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~---------------------------------~-------~v~giDis~~~i~   68 (312)
                      ..++..++|-=||+|..+...+....                                 .       .++|+|+++.+|+
T Consensus       189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~  268 (381)
T COG0116         189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE  268 (381)
T ss_pred             CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence            34667899999999977654433210                                 1       3789999999999


Q ss_pred             HHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHH----HHHHHHHHHHhccCCCcEEEE
Q 021467           69 EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLG  144 (312)
Q Consensus        69 ~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~----~~~~~l~~i~~~LkpGG~~i~  144 (312)
                      .|+.+....+....++|.++|+....-      +...+|+|+|+-..---+.+..    -.+.+.+.+++.++--+.+++
T Consensus       269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~  342 (381)
T COG0116         269 GAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF  342 (381)
T ss_pred             HHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence            999999998888889999999987543      2268999999865322224442    235666777788888888888


Q ss_pred             EecChhHHH
Q 021467          145 ITPDSSTIW  153 (312)
Q Consensus       145 ~~p~~~~l~  153 (312)
                      ++...-...
T Consensus       343 tt~e~~~~~  351 (381)
T COG0116         343 TTSEDLLFC  351 (381)
T ss_pred             EccHHHHHH
Confidence            876654433

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.00033  Score=62.23  Aligned_cols=113  Identities=15%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      -+.|+.+||+-|.|+|.....+++.  +.++++-+|+-..-.+.|++-++..+....+++.+-|++...+..    +...
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~  177 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLK  177 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccc
Confidence            3569999999999999887777765  567999999999999999999998887778999999999877632    3578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecChhHHH
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW  153 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~~~l~  153 (312)
                      +|.|+.-.         ...-.++-.+.++||.+| +|+...|.-+.+-
T Consensus       178 aDaVFLDl---------PaPw~AiPha~~~lk~~g~r~csFSPCIEQvq  217 (314)
T KOG2915|consen  178 ADAVFLDL---------PAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQ  217 (314)
T ss_pred             cceEEEcC---------CChhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence            99986543         234456667777898876 5555566655543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00012  Score=70.55  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=78.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+=||.|.+...++ ....+|+|+|+++++++.|+++.+.++... ++|+.+|+......  .. ....+|+|+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~--~~-~~~~~d~Vv  367 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPA--WW-EGYKPDVVV  367 (432)
T ss_pred             CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhh--cc-ccCCCCEEE
Confidence            56799999999998777775 456699999999999999999999887654 89999988664321  10 135789998


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      ..-.=--  .    -+.+++.+. .++|-.+++++ .|...+.+.+.
T Consensus       368 vDPPR~G--~----~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl~  406 (432)
T COG2265         368 VDPPRAG--A----DREVLKQLA-KLKPKRIVYVS-CNPATLARDLA  406 (432)
T ss_pred             ECCCCCC--C----CHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHHH
Confidence            7543111  1    124444444 45666666654 66666665554

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.77  E-value=0.00061  Score=61.71  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=67.3

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHH--hcCCCceE-EEEEcCCCCC---------------
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIA-EFFEADPCAE---------------   93 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~--~~~~~~~~-~f~~~D~~~~---------------   93 (312)
                      ..+||--|||.|+.+..++..+. ..-|-+.|--|+-...=.+.  .....+.+ -|++.-....               
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            56899999999999998887766 66777888887754332221  11101111 1111111110               


Q ss_pred             ----------------chhhhhhh--cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           94 ----------------NFETQMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        94 ----------------~~~~~~~~--~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                                      ++.+....  ..+.||+|+..|    ..++....-..++.|.+.|||||+.+-.
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiNl  295 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWINL  295 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEec
Confidence                            01011111  235799887766    4566777899999999999999998744

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00016  Score=64.52  Aligned_cols=80  Identities=11%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||+|.|..+..+++... +|+++++++.++...+++....   .+++.+++|+...++...     ..++.
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l-----~~~~~   98 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL-----AQPYK   98 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-----cCCCE
Confidence            44678999999999988888877655 7999999999999999987522   238999999998777210     16778


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+++-..+-
T Consensus        99 vVaNlPY~I  107 (259)
T COG0030          99 VVANLPYNI  107 (259)
T ss_pred             EEEcCCCcc
Confidence            887765443

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.75  E-value=0.00056  Score=59.40  Aligned_cols=106  Identities=14%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.++.+||-||.++|........-  ..+.|++++.|+.+....-.-.+...   ++--+..|+....-...   --+..
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~---lv~~V  144 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRM---LVEMV  144 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTT---TS--E
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhc---ccccc
Confidence            458999999999999877777653  35689999999977665544443322   26678889886433211   13589


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|.+--+      ..++.+-++.|+...||+||.+++.+
T Consensus       145 DvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  145 DVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             EEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            99987653      24578899999999999999999873

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.72  E-value=0.00033  Score=62.67  Aligned_cols=111  Identities=16%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             CEEEEECCCC--CccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467           33 VTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (312)
Q Consensus        33 ~~VLDlGCG~--G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f  106 (312)
                      ...||||||-  -+.....++.  +..+|+-+|.++..+..++..+..+.. ....++++|+.+..-  .+.  .-.+-+
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l  146 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL  146 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence            4799999994  3355555543  667999999999999999998876542 247899999987431  111  001223


Q ss_pred             e-----EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D-----~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |     .|++...+|+ ..+.++...+++.+...|.||.++.++..
T Consensus       147 D~~rPVavll~~vLh~-v~D~~dp~~iv~~l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHF-VPDDDDPAGIVARLRDALAPGSYLAISHA  191 (267)
T ss_dssp             -TTS--EEEECT-GGG-S-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred             CCCCCeeeeeeeeecc-CCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence            3     4566677887 46667899999999999999999999943

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.71  E-value=0.00015  Score=61.51  Aligned_cols=107  Identities=21%  Similarity=0.107  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|||+|+|+|--....++.+...|+..|+.+..+...+-+.+.++  ..+.+...|+..         .+..||+|+
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---------~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---------SPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccccC---------CCcceeEEE
Confidence            578999999999966666666788899999999888887777777665  457888888765         357899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      ....    |-+......++.-..++...|-.+++-.|....+
T Consensus       148 agDl----fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         148 AGDL----FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             eece----ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            8884    3345566777774444444455555555655444

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.67  E-value=0.0015  Score=59.83  Aligned_cols=59  Identities=17%  Similarity=0.085  Sum_probs=46.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~   90 (312)
                      .++..++|.=||.||++..++.. +..+|+|+|.++.+++.|+++.....  .++.+++++.
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF   78 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNF   78 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCH
Confidence            47789999999999999988875 34799999999999999999876531  1355555554

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.64  E-value=5.2e-05  Score=65.26  Aligned_cols=101  Identities=19%  Similarity=0.142  Sum_probs=72.1

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ...|+|.-||.||.....+.... .|++||+++.-|..|+.+++-.+...++.|+++|..+.  ...++.....+|+|..
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~--~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL--ASKLKADKIKYDCVFL  171 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH--HHHHhhhhheeeeeec
Confidence            45899999999998888766554 89999999999999999998877767899999998653  2223223345778877


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCC
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPG  139 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpG  139 (312)
                      +....+    .+....-+-.+...+.|.
T Consensus       172 sppwgg----p~y~~~~~~DL~~~~~p~  195 (263)
T KOG2730|consen  172 SPPWGG----PSYLRADVYDLETHLKPM  195 (263)
T ss_pred             CCCCCC----cchhhhhhhhhhhhcchh
Confidence            664433    333444455555555554

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.60  E-value=0.0025  Score=57.44  Aligned_cols=91  Identities=12%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        18 n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      ..+...+++.. ..++..|||+|+|.|..+..++... .+++++|+++.+++..++++...+   +++++.+|+...+..
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~---~~~vi~~D~l~~~~~   91 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP---NVEVINGDFLKWDLY   91 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS---SEEEEES-TTTSCGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc---cceeeecchhccccH
Confidence            33444444443 2378999999999999888887777 799999999999999999876332   389999999887663


Q ss_pred             hhhhhcCCceeEEEeccch
Q 021467           97 TQMQEKANQADLVCCFQHL  115 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~l  115 (312)
                      ..+   ...-..|+++-..
T Consensus        92 ~~~---~~~~~~vv~NlPy  107 (262)
T PF00398_consen   92 DLL---KNQPLLVVGNLPY  107 (262)
T ss_dssp             GHC---SSSEEEEEEEETG
T ss_pred             Hhh---cCCceEEEEEecc
Confidence            211   2345566665544

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.60  E-value=0.00045  Score=64.98  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=66.3

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--------hh--hhhhhc
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--------FE--TQMQEK  102 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~--------~~--~~~~~~  102 (312)
                      .+|||+-||.|.....++ ....+|+|+|+++++++.|++.++.++. .+++|+++++.+..        +.  ..+...
T Consensus       198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            489999999997777764 4556999999999999999999988764 34899988764321        00  000112


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      ...+|+|+.--.=--  .+    +.+++.+.+   + ..++-...|+..+.+-+.
T Consensus       276 ~~~~d~vilDPPR~G--~~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~  320 (352)
T PF05958_consen  276 SFKFDAVILDPPRAG--LD----EKVIELIKK---L-KRIVYVSCNPATLARDLK  320 (352)
T ss_dssp             CTTESEEEE---TT---SC----HHHHHHHHH---S-SEEEEEES-HHHHHHHHH
T ss_pred             hcCCCEEEEcCCCCC--ch----HHHHHHHhc---C-CeEEEEECCHHHHHHHHH
Confidence            346899876432111  11    122333332   2 367777788877766664

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.58  E-value=0.00083  Score=60.67  Aligned_cols=108  Identities=15%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             CEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           33 VTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~-~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+|+=||||.=-.+.-++..   ....++++|+++++++.|++-.+ ..+...++.|+++|..+...      .-..||+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~Dv  195 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYDV  195 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----SE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCCE
Confidence            59999999986555554442   24579999999999999998776 33334458999999866433      2368999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+......   .+.+.....+.++.+.++||..++.-..++
T Consensus       196 V~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G  233 (276)
T PF03059_consen  196 VFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG  233 (276)
T ss_dssp             EEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred             EEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence            98766332   245567889999999999999988774443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.56  E-value=0.00055  Score=62.44  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=77.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|+|.|+=+..++..  ....+++.|++..-+...+++.+..+.. .+.....|.......    .....||.
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~----~~~~~fd~  159 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPK----KPESKFDR  159 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHH----HHTTTEEE
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccc----ccccccch
Confidence            7889999999999977666554  3569999999999999999988776532 255555554432110    02346999


Q ss_pred             EEeccc------hhh------hc--CC----HHHHHHHHHHHHhcc----CCCcEEEEEecCh
Q 021467          109 VCCFQH------LQM------CF--ET----EERARRLLQNVSSLL----KPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~------lh~------~~--~~----~~~~~~~l~~i~~~L----kpGG~~i~~~p~~  149 (312)
                      |++-..      +..      ..  .+    .....++|+++.+.+    ||||+++-+|..-
T Consensus       160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            987221      111      00  00    133578899999999    9999999886544

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.56  E-value=2.8e-05  Score=66.25  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ..++||+|.|.|.... .......+|++.++|..|+.+.+++-      +++- -..+-.+         .+-+||+|+|
T Consensus       113 ~~~lLDlGAGdGeit~-~m~p~feevyATElS~tMr~rL~kk~------ynVl-~~~ew~~---------t~~k~dli~c  175 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITL-RMAPTFEEVYATELSWTMRDRLKKKN------YNVL-TEIEWLQ---------TDVKLDLILC  175 (288)
T ss_pred             CeeEEeccCCCcchhh-hhcchHHHHHHHHhhHHHHHHHhhcC------Ccee-eehhhhh---------cCceeehHHH
Confidence            4799999999994444 33445668999999999987765542      1110 0111111         2457999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCC-CcEEEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~Lkp-GG~~i~~  145 (312)
                      ...+.-++.    .-.+|+.++.+|+| +|.+|+.
T Consensus       176 lNlLDRc~~----p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  176 LNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             HHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence            998776555    67789999999999 8888876

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.55  E-value=0.0009  Score=58.03  Aligned_cols=109  Identities=11%  Similarity=0.016  Sum_probs=70.9

Q ss_pred             EEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           35 VCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        35 VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      |.|+||-.|.....+.+.+ ..+++++|+++..++.|++..+..+...++++..+|-... +    + +....|.|+...
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l----~-~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-L----K-PGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-c----C-CCCCCCEEEEec
Confidence            6899999997777777764 4579999999999999999999887777799999986541 2    1 223378777655


Q ss_pred             chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus       114 ~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      +      .-......|.+....++....|++.-.+....+++
T Consensus        75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~  110 (205)
T PF04816_consen   75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRR  110 (205)
T ss_dssp             E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHH
T ss_pred             C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHH
Confidence            2      12346777888878887766777754444333333

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.54  E-value=0.00081  Score=56.63  Aligned_cols=109  Identities=17%  Similarity=0.060  Sum_probs=66.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhh--hcC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~--~~~  103 (312)
                      +.|+.+|||+||..|.-+.-..+.  +.+.|.|||+-.-        .+..+    +.++++ |+++......+.  .++
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCC
Confidence            348899999999999544333322  5568999999532        12223    566666 777754332221  146


Q ss_pred             CceeEEEeccchhhh----c---CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~----~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .+.|+|++-.+-.-.    .   .+.+--..++.-....++|+|.|++-+-+.
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence            889999985532110    0   112222344555567789999999987665

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.49  E-value=0.00083  Score=61.27  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhc--CCCCEEEEECCCCCccHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCC
Q 021467           18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAE   93 (312)
Q Consensus        18 n~vk~~li~~~~--~~~~~VLDlGCG~G~~l~~~~-~~~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~   93 (312)
                      -|+...|-....  +...++||||||....--.+. +....+++|.||++.+++.|++..+.+ +...++++....-.. 
T Consensus        87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~-  165 (299)
T PF05971_consen   87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD-  165 (299)
T ss_dssp             HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST--
T ss_pred             HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc-
Confidence            566555433211  125689999999874322221 224679999999999999999999888 655567776554222 


Q ss_pred             chhhhhhhcCCceeEEEeccchhh
Q 021467           94 NFETQMQEKANQADLVCCFQHLQM  117 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~  117 (312)
                      .+...+......||+.+|+-.+|.
T Consensus       166 ~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  166 NIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             SSTTTSTT--S-EEEEEE-----S
T ss_pred             ccchhhhcccceeeEEecCCcccc
Confidence            222222223568999999988776

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00078  Score=58.94  Aligned_cols=101  Identities=16%  Similarity=0.090  Sum_probs=71.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++..+||+|+.|||++.-+++.+..+|+|+|..-..+..   +++....  -+.+-..|+.......    -.+..|+++
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~r--V~~~E~tN~r~l~~~~----~~~~~d~~v  149 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPR--VIVLERTNVRYLTPED----FTEKPDLIV  149 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCc--EEEEecCChhhCCHHH----cccCCCeEE
Confidence            789999999999999999999999999999998765542   2222111  1333344444332211    134788999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |--++--       +...|..+..+++|+|-++..+-
T Consensus       150 ~DvSFIS-------L~~iLp~l~~l~~~~~~~v~LvK  179 (245)
T COG1189         150 IDVSFIS-------LKLILPALLLLLKDGGDLVLLVK  179 (245)
T ss_pred             EEeehhh-------HHHHHHHHHHhcCCCceEEEEec
Confidence            8774433       67789999999999999887643

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.44  E-value=0.00097  Score=61.68  Aligned_cols=94  Identities=14%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.++|||||++||.+..+.+.+. +|++||.++-     .......+   ++..+..|......      ..+.+|+
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~---~V~h~~~d~fr~~p------~~~~vDw  273 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTG---QVEHLRADGFKFRP------PRKNVDW  273 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCC---CEEEEeccCcccCC------CCCCCCE
Confidence            35789999999999999998888776 9999996541     12222222   38888888766432      2578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCC--cEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG--G~~i~~  145 (312)
                      ++|-.+.        +.....+-+.++|..|  ..+|++
T Consensus       274 vVcDmve--------~P~rva~lm~~Wl~~g~cr~aIfn  304 (357)
T PRK11760        274 LVCDMVE--------KPARVAELMAQWLVNGWCREAIFN  304 (357)
T ss_pred             EEEeccc--------CHHHHHHHHHHHHhcCcccEEEEE
Confidence            9987732        2455566677777655  344444

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0011  Score=63.96  Aligned_cols=60  Identities=17%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~   91 (312)
                      +.+..+||++||+|.... .+.++..+|+|+++++++++.|+.....++. .+++|+++-+.
T Consensus       382 ~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE  441 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAE  441 (534)
T ss_pred             CCCcEEEEEeecCCceeh-hhhccccceeeeecChhhcchhhhcchhcCc-cceeeeecchh
Confidence            367899999999994444 4456788999999999999999999887764 34899999443

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.00033  Score=57.60  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .+.+||++|.|--+.+..+..  +....|...|-++++++..++....+.  ...++.....+...    .+.+.....|
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~----aqsq~eq~tF  104 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG----AQSQQEQHTF  104 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh----hHHHHhhCcc
Confidence            457899999986545444433  356789999999999998877654431  01111111111111    1112235699


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~  159 (312)
                      |+|+|..++..    .+..+.+++.|.++|+|.|..++..|-...-.+++...
T Consensus       105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de  153 (201)
T KOG3201|consen  105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE  153 (201)
T ss_pred             cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence            99999987655    56678899999999999999998888875555555443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.37  E-value=0.00023  Score=54.69  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=43.5

Q ss_pred             EEECCCCCccHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        36 LDlGCG~G~~l~~~~~~----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ||+|+..|..+..++..    ...+++++|..+. .+.+++..+..+...+++++.+|..+  ....+.  .+++|+|+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~~--~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSLP--DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHHH--H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHcC--CCCEEEEEE
Confidence            68999999776666543    2237999999995 22333333322223348999998743  212222  478999987


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      -.. |.    .+.....+..+...|+|||++++-
T Consensus        76 Dg~-H~----~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   76 DGD-HS----YEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCC-CC----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence            662 22    456778899999999999998863

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.012  Score=50.26  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.++.+||=||..+|........- +...++|++.|+.+....-...+..+.   +--+..|+....-...   --+..|
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N---i~PIL~DA~~P~~Y~~---~Ve~VD  147 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN---IIPILEDARKPEKYRH---LVEKVD  147 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC---ceeeecccCCcHHhhh---hccccc
Confidence            458999999999999888877654 446899999999998776665554332   5567788876432211   135689


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE--------ecChhHHHHHH
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY  156 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~--------~p~~~~l~~~~  156 (312)
                      +|.+--      --..+++-+..|+...||+||++++.        +-++..++++-
T Consensus       148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e  198 (231)
T COG1889         148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE  198 (231)
T ss_pred             EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence            987644      23567888999999999999988766        45556666543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.28  E-value=0.00046  Score=58.12  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=74.3

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ...+.|||.|+| .+...+.....+|++++.++.-.+.|.++..-++ ..+.+.+.+|+...++        ...|+|+|
T Consensus        33 ~d~~~DLGaGsG-iLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic  102 (252)
T COG4076          33 EDTFADLGAGSG-ILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC  102 (252)
T ss_pred             hhceeeccCCcc-hHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence            478999999999 5555555567799999999999888888865443 2358899999988766        56899988


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      -.. .-++. .+.....+..+.+.||-+|.++
T Consensus       103 Eml-DTaLi-~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         103 EML-DTALI-EEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HHh-hHHhh-cccccHHHHHHHHHhhcCCccc
Confidence            652 22222 3445567777888999888876

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.27  E-value=0.00091  Score=54.07  Aligned_cols=58  Identities=9%  Similarity=-0.024  Sum_probs=45.0

Q ss_pred             EEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 021467           34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~   92 (312)
                      +|||+|||.|..+..++.... .+++++|+++.+++.++++++.++.. ++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999977666655533 48999999999999999998776532 37777777655

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.25  E-value=0.0024  Score=55.00  Aligned_cols=106  Identities=19%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+||.+|-|-|-...+...+++.+-+-|+..++.++..+...-..  ..++....+--.+  ....+  +++.||-|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeD--vl~~L--~d~~FDGI  173 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWED--VLNTL--PDKHFDGI  173 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHh--hhccc--cccCccee
Confidence            478999999999996666666667777788999999988776653221  1123333331111  11111  46789988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .----    -+.-++.+.+.+.+.++|||+|.|-..
T Consensus       174 ~yDTy----~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  174 YYDTY----SELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             Eeech----hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            64321    134578899999999999999998754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.18  E-value=0.0025  Score=51.63  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccch-----hhhcCCHHHHHHHHH
Q 021467           56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL-----QMCFETEERARRLLQ  130 (312)
Q Consensus        56 ~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l-----h~~~~~~~~~~~~l~  130 (312)
                      +|+|+||-+++|+.+++|.++.+...+++++..+=..  +...++  .+++|+|+-+.+.     |-..-..+.-..+++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            5899999999999999999987655568888765332  322222  2589998765542     222233556678899


Q ss_pred             HHHhccCCCcEEEEEe
Q 021467          131 NVSSLLKPGGYFLGIT  146 (312)
Q Consensus       131 ~i~~~LkpGG~~i~~~  146 (312)
                      .+.++|+|||+++++.
T Consensus        77 ~al~lL~~gG~i~iv~   92 (140)
T PF06962_consen   77 AALELLKPGGIITIVV   92 (140)
T ss_dssp             HHHHHEEEEEEEEEEE
T ss_pred             HHHHhhccCCEEEEEE
Confidence            9999999999999884

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.08  E-value=0.013  Score=53.26  Aligned_cols=48  Identities=25%  Similarity=0.250  Sum_probs=42.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      .++...+|.--|.||.+..++...  .++++|+|-++.+|+.|+++....
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~   71 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF   71 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc
Confidence            478899999999999999998874  368999999999999999988653

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.06  E-value=0.0021  Score=55.43  Aligned_cols=115  Identities=19%  Similarity=0.215  Sum_probs=59.2

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      +.||-+.-  ...|+++|.-.||.+..|+..     ..++|+|+||.-....  +...+..+...+++++++|..+....
T Consensus        25 qeli~~~k--Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~  100 (206)
T PF04989_consen   25 QELIWELK--PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIV  100 (206)
T ss_dssp             HHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHH
T ss_pred             HHHHHHhC--CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHH
Confidence            34444433  479999999999988877542     4569999999643322  22233322223499999999886654


Q ss_pred             hhhhhc--CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           97 TQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        97 ~~~~~~--~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+...  ...-.+|+- .+-|.    .+...+-|+....++.+|+++++.
T Consensus       101 ~~v~~~~~~~~~vlVil-Ds~H~----~~hvl~eL~~y~plv~~G~Y~IVe  146 (206)
T PF04989_consen  101 DQVRELASPPHPVLVIL-DSSHT----HEHVLAELEAYAPLVSPGSYLIVE  146 (206)
T ss_dssp             HTSGSS----SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred             HHHHHhhccCCceEEEE-CCCcc----HHHHHHHHHHhCccCCCCCEEEEE
Confidence            333221  123334443 33232    233566677899999999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.05  E-value=0.0076  Score=52.49  Aligned_cols=98  Identities=19%  Similarity=0.070  Sum_probs=65.5

Q ss_pred             CCEEEEECCCCCccHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc-eeEE
Q 021467           32 YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~-~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~-fD~V  109 (312)
                      +.+++|||+|.|--...++ ..+..+++-+|....-+.-.+.-..+.+. .+++++++.+.+..-       ... ||+|
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~-------~~~~~D~v  139 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ-------EKKQYDVV  139 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-------ccccCcEE
Confidence            5899999999994333332 23444699999988776655555444332 127888887755331       223 9999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++-...        .+..++.-+..++|+||.++..
T Consensus       140 tsRAva--------~L~~l~e~~~pllk~~g~~~~~  167 (215)
T COG0357         140 TSRAVA--------SLNVLLELCLPLLKVGGGFLAY  167 (215)
T ss_pred             Eeehcc--------chHHHHHHHHHhcccCCcchhh
Confidence            987632        2566677788899999987643

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.05  E-value=0.0047  Score=54.67  Aligned_cols=106  Identities=18%  Similarity=0.152  Sum_probs=68.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|+|||||-=-.+..|... ....|+|+||+..+++....-....+  ........|+....       +....|+.
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~-------~~~~~Dla  175 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDP-------PKEPADLA  175 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEESEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccC-------CCCCcchh
Confidence            5789999999998788888765 34699999999999998888766544  23566677887754       35789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ...=.+|- +  +.+.+..--++...++.. .+++++|..
T Consensus       176 LllK~lp~-l--e~q~~g~g~~ll~~~~~~-~~vVSfPtr  211 (251)
T PF07091_consen  176 LLLKTLPC-L--ERQRRGAGLELLDALRSP-HVVVSFPTR  211 (251)
T ss_dssp             EEET-HHH-H--HHHSTTHHHHHHHHSCES-EEEEEEES-
T ss_pred             hHHHHHHH-H--HHHhcchHHHHHHHhCCC-eEEEecccc
Confidence            98887775 1  122222323444444432 566677764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.99  E-value=0.0088  Score=55.49  Aligned_cols=112  Identities=13%  Similarity=0.026  Sum_probs=77.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHH--HHhcC----CCceEEEEEcCCCCCchhhhhhhcC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r--~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ...+||-+|.|.|--+..+.+.+ ..+++-+|++++||+.++..  ....+    ...+++.+..|+.+.     ++...
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-----lr~a~  363 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-----LRTAA  363 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-----HHhhc
Confidence            34589999999997777777765 78999999999999999843  22211    134578888887652     22235


Q ss_pred             CceeEEEeccchhhhcCC--HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          104 NQADLVCCFQHLQMCFET--EERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~--~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ..||.|+.-..=-. -.+  .---.++..-+++.|+++|.+++..-+
T Consensus       364 ~~fD~vIVDl~DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         364 DMFDVVIVDLPDPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             ccccEEEEeCCCCC-CcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence            68999987442000 000  111356788899999999999987433

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.95  E-value=0.0074  Score=55.41  Aligned_cols=60  Identities=17%  Similarity=0.125  Sum_probs=42.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP   90 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~   90 (312)
                      ..++..++|.--|.||.+..++.. +..+++|+|-++++++.|++++....  .++.+++++.
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~--~r~~~~~~~F   78 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD--DRFIFIHGNF   78 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC--TTEEEEES-G
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc--ceEEEEeccH
Confidence            347889999999999999999876 45899999999999999998876431  2355555554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.92  E-value=0.0095  Score=51.42  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             CCCEEEEECCCCCccHHHHH--H-cCCCeEEEEeCChHHHHHHHHHHHh-------------------------------
Q 021467           31 PYVTVCDLYCGAGVDVDKWE--T-ALIANYIGIDVATSGIGEARDTWEN-------------------------------   76 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~--~-~~~~~v~giDis~~~i~~a~~r~~~-------------------------------   76 (312)
                      ...++.|-|||.|..+.-+-  + .....|+|-||++++|+.|+++..-                               
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            45689999999997665332  2 2557899999999999998873310                               


Q ss_pred             ----------cCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhh--cC---CHHHHHHHHHHHHhccCCCcE
Q 021467           77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC--FE---TEERARRLLQNVSSLLKPGGY  141 (312)
Q Consensus        77 ----------~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~--~~---~~~~~~~~l~~i~~~LkpGG~  141 (312)
                                .+-..+....++|+++........ .....|+|+.-...-.+  ++   +.+-..++|.+++.+| |++.
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~s  208 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERS  208 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCc
Confidence                      112345678899998855433332 23456999884432111  12   3456789999999999 5555


Q ss_pred             EEEE
Q 021467          142 FLGI  145 (312)
Q Consensus       142 ~i~~  145 (312)
                      ++..
T Consensus       209 VV~v  212 (246)
T PF11599_consen  209 VVAV  212 (246)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.83  E-value=0.0096  Score=58.50  Aligned_cols=118  Identities=19%  Similarity=0.194  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +..+|+|-+||+|+.+......   .  ...++|.++.+.....|+-..--++....+....+|....+.... ....+.
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~  264 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK  264 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence            5679999999999988755442   2  246999999999999999887655543334555555544433211 112467


Q ss_pred             eeEEEeccchh---h-----------------hcCCHHHH-HHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh---~-----------------~~~~~~~~-~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ||.|+++..+-   +                 .+...... ..+++.+...|+|||+.-+..|+.
T Consensus       265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence            99988864431   1                 01112233 788999999999999666666655

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.75  E-value=0.00063  Score=55.52  Aligned_cols=57  Identities=25%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhH
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV  160 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~  160 (312)
                      .+++.|+|.+..++.|  .+.+.-..+++.+++.|||||++-+..||...+...|+..+
T Consensus        44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v  100 (185)
T COG4627          44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV  100 (185)
T ss_pred             CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh
Confidence            5789999999888877  56677889999999999999999999999999998888654

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.74  E-value=0.05  Score=50.82  Aligned_cols=46  Identities=15%  Similarity=0.104  Sum_probs=32.0

Q ss_pred             cCCceeEEEeccchhhhc------CC-----------------------------HHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          102 KANQADLVCCFQHLQMCF------ET-----------------------------EERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~------~~-----------------------------~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++++.|++.+..++|+.=      .+                             ..+...+|+.=++-|+|||++++++
T Consensus       104 P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  183 (334)
T PF03492_consen  104 PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTF  183 (334)
T ss_dssp             -TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEE
Confidence            678999999999999861      00                             1445667777778899999999984


Q ss_pred             c
Q 021467          147 P  147 (312)
Q Consensus       147 p  147 (312)
                      +
T Consensus       184 ~  184 (334)
T PF03492_consen  184 L  184 (334)
T ss_dssp             E
T ss_pred             e
Confidence            4

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.72  E-value=0.0052  Score=58.24  Aligned_cols=109  Identities=13%  Similarity=0.131  Sum_probs=75.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...+|||.=+|+|.-...|+..  +..+|+.-|+|+++++..+++.+.++... .++..+.|+...     +......||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-----l~~~~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-----LYSRQERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-----HCHSTT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-----hhhccccCC
Confidence            3569999999999766666665  56799999999999999999998887655 577888886441     111357899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      +|=.-        .-.....+|..+.+.++.||.+.+|.-|...+
T Consensus       124 ~IDlD--------PfGSp~pfldsA~~~v~~gGll~vTaTD~a~L  160 (377)
T PF02005_consen  124 VIDLD--------PFGSPAPFLDSALQAVKDGGLLCVTATDTAVL  160 (377)
T ss_dssp             EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred             EEEeC--------CCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence            99542        22336678999999999999999997666443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.61  E-value=0.049  Score=47.32  Aligned_cols=113  Identities=11%  Similarity=0.013  Sum_probs=80.2

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +..+++.+.++.|+||-.|.....+.+. ....+++.|+++..++.|.+..+.++...+++...+|... .+.     .+
T Consensus        10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~   83 (226)
T COG2384          10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE   83 (226)
T ss_pred             HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence            3456667777999999999777776665 5678999999999999999999988876667777777643 221     34


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ..+|+|+...+      .-......|.+-.+.|+.=-+++. .|+..
T Consensus        84 d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~  123 (226)
T COG2384          84 DEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLIL-QPNIH  123 (226)
T ss_pred             CCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEE-CCCCC
Confidence            57998877652      123356677777777764434444 56653

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.039  Score=51.39  Aligned_cols=123  Identities=15%  Similarity=0.037  Sum_probs=72.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh---hhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQ  100 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~---~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~---~~~~  100 (312)
                      ++|+.+|||+|...|+-...++..   .  ...|++-|++..-+..........+ .........|+...+-.   ..-+
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~  231 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND  231 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence            348999999999999877666654   2  2379999999887776666553322 11133333333321110   0000


Q ss_pred             hcCCceeEEEeccch------hh---hcCC----------HHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          101 EKANQADLVCCFQHL------QM---CFET----------EERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       101 ~~~~~fD~V~~~~~l------h~---~~~~----------~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      .....||-|.|--..      ..   .+..          ..-.-.+|.+-.++||+||.++-+|..-+.+
T Consensus       232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi  302 (375)
T KOG2198|consen  232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI  302 (375)
T ss_pred             hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence            123578988872211      00   0000          1223567889999999999999997666443

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.39  E-value=0.028  Score=53.10  Aligned_cols=113  Identities=13%  Similarity=0.024  Sum_probs=75.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.||||+|+..||-....+..  ..+.+++.|.+..-+......+...+.. .......|....+-  ..  -.++||-
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR  315 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR  315 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence            7899999999999876665543  4558999999999999888888776532 23445566543221  00  1237998


Q ss_pred             EEeccchhh------------------hcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQM------------------CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~------------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |..-...--                  +..-..-++++|.....++++||+++-+|..
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            875221100                  0001223588899999999999999977443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.28  E-value=0.039  Score=44.92  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +..+.+|||+|.|+.....++.+...-+|+++++-.+..++-+.-..+...+..|..-|+...++        ..|..|+
T Consensus        72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv  143 (199)
T KOG4058|consen   72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV  143 (199)
T ss_pred             CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence            55789999999999888877777668899999998888777665444545567888888877666        3355554


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~  149 (312)
                      ...+       +.-+..+-..+..-+..|..++.. +|=.
T Consensus       144 iFga-------es~m~dLe~KL~~E~p~nt~vvacRFPLP  176 (199)
T KOG4058|consen  144 IFGA-------ESVMPDLEDKLRTELPANTRVVACRFPLP  176 (199)
T ss_pred             Eeeh-------HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence            3332       222444455566667778777765 4443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.19  E-value=0.013  Score=50.08  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=63.9

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC------CceEEEEEcCCCCCchhhhhhhcCC
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~------~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .-.+.|||||-|+.+..+... +...+.|.+|-...-+..++|+...+.      -.++.....++..  +...+- ..+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk--~lpn~f-~kg  137 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK--FLPNFF-EKG  137 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh--hccchh-hhc
Confidence            457999999999999988765 556789999998888888888765331      0112333333322  100000 011


Q ss_pred             cee-EEEeccchhhhc---CCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          105 QAD-LVCCFQHLQMCF---ETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 ~fD-~V~~~~~lh~~~---~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +.+ ..++.---|.--   ...---..++.+..-+|++||.++.++
T Consensus       138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            111 112111122200   000112567888999999999998664

>PRK11524 putative methyltransferase; Provisional

Probab=95.93  E-value=0.026  Score=51.45  Aligned_cols=56  Identities=20%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      +...+|..+..++..|||--||+|..+... .....+++|+|++++.++.|++|+..
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            445667777789999999999999655544 44456899999999999999999864

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.82  E-value=0.022  Score=51.78  Aligned_cols=72  Identities=19%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      +|+|+.||.|+...-+...+...+.++|+++.+++..+.++..       ..+++|+.+.....    ....+|+++..+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence            6999999999988888777887889999999998877776642       15677776654311    035699999877


Q ss_pred             chh
Q 021467          114 HLQ  116 (312)
Q Consensus       114 ~lh  116 (312)
                      ..+
T Consensus        71 PCq   73 (275)
T cd00315          71 PCQ   73 (275)
T ss_pred             CCh
Confidence            543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.65  E-value=0.034  Score=48.15  Aligned_cols=53  Identities=28%  Similarity=0.307  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~   72 (312)
                      -+...+|..+..++..|||.-||+|..+..... -..+++|+|++++..+.|++
T Consensus       179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhhhccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence            345567778888999999999999965555444 44589999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.64  E-value=0.0078  Score=46.44  Aligned_cols=40  Identities=28%  Similarity=0.566  Sum_probs=31.5

Q ss_pred             ceeEEEeccc---hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~---lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .||+|+|..+   +|. -...+.+..+++.+++.|+|||+||+-
T Consensus         1 ~yDvilclSVtkWIHL-n~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHL-NWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             -EEEEEEES-HHHHHH-HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccEEEEEEeeEEEEe-cCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            4999999877   342 234677899999999999999999986

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK13699 putative methylase; Provisional

Probab=95.56  E-value=0.049  Score=48.00  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      +...+|..+..++..|||--||+|..+...... ..+++|+|++++..+.|.+|+...
T Consensus       152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence            334567777789999999999999666655443 458999999999999999998753

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=0.0052  Score=59.05  Aligned_cols=112  Identities=13%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||.=|++|-....|++.  +..++++-|.++.+++..+++.+.++....++-.+.|+...-..  .+.....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence            4578999999999888888876  67799999999999999998887775444455555665432111  0112478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |-.        +.......+|....+.++.||.+.+|.-|...+
T Consensus       187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL  222 (525)
T KOG1253|consen  187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL  222 (525)
T ss_pred             Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence            953        333345678888999999999999996665433

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.49  E-value=0.058  Score=49.99  Aligned_cols=123  Identities=12%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             CCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..+|||+|.|.|.-+.....-  ....++-++.|+..-+.... ...+-.......-..|++...+.  ++ ....|++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~--lp-~ad~ytl~  189 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLS--LP-AADLYTLA  189 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccC--CC-ccceeehh
Confidence            457999999999544332211  22345555655543332222 22211100111222233222110  11 23445555


Q ss_pred             Eeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467          110 CCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (312)
Q Consensus       110 ~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~  160 (312)
                      +...- +|.  .++..+...++.+..++.|||.+++.   +|-+-.++.+.++.+
T Consensus       190 i~~~eLl~d--~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~l  242 (484)
T COG5459         190 IVLDELLPD--GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQIL  242 (484)
T ss_pred             hhhhhhccc--cCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHH
Confidence            44332 222  34444556899999999999999999   555555555555543

>PRK10742 putative methyltransferase; Provisional

Probab=95.48  E-value=0.058  Score=47.95  Aligned_cols=80  Identities=10%  Similarity=-0.005  Sum_probs=56.8

Q ss_pred             CCCC--EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------CC--CceEEEEEcCCCCCchhhhh
Q 021467           30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--NFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        30 ~~~~--~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~------~~--~~~~~f~~~D~~~~~~~~~~   99 (312)
                      +++.  +|||+-+|.|.+...++..+. +|+++|-++......+...+..      +.  ..+++.+++|....     +
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~-----L  158 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----L  158 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH-----H
Confidence            3555  899999999999998887766 5999999999887776655442      11  12477777776442     1


Q ss_pred             hhcCCceeEEEeccch
Q 021467          100 QEKANQADLVCCFQHL  115 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~l  115 (312)
                      .....+||+|.+--.+
T Consensus       159 ~~~~~~fDVVYlDPMf  174 (250)
T PRK10742        159 TDITPRPQVVYLDPMF  174 (250)
T ss_pred             hhCCCCCcEEEECCCC
Confidence            1123479999987643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.47  E-value=0.12  Score=48.03  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             HhcCCCCEEEEECCC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           27 IYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..+.|+.+|+=+|+| -|..+.+++++-..+|+++|.|++-++.|++--..       .++...  +.+....+   .+.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~  229 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI  229 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence            345689999999998 23456677776558999999999999888876533       233322  22221111   234


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|+..-. .+          .+....+.||+||+++..
T Consensus       230 ~d~ii~tv~-~~----------~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         230 ADAIIDTVG-PA----------TLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             CcEEEECCC-hh----------hHHHHHHHHhcCCEEEEE
Confidence            999987664 33          466677899999999987

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.45  E-value=0.13  Score=48.79  Aligned_cols=47  Identities=15%  Similarity=0.154  Sum_probs=34.0

Q ss_pred             cCCceeEEEeccchhhhcCC----------------------------------HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          102 KANQADLVCCFQHLQMCFET----------------------------------EERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~----------------------------------~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +.++.+++.+.+++|+.=.-                                  ..+...+|+.=++-|+|||.+++++.
T Consensus       159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~  238 (386)
T PLN02668        159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL  238 (386)
T ss_pred             CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence            56899999999999984110                                  01345566666788999999999853


Q ss_pred             C
Q 021467          148 D  148 (312)
Q Consensus       148 ~  148 (312)
                      .
T Consensus       239 G  239 (386)
T PLN02668        239 G  239 (386)
T ss_pred             c
Confidence            3

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.45  E-value=0.053  Score=50.56  Aligned_cols=123  Identities=12%  Similarity=0.117  Sum_probs=80.9

Q ss_pred             HhHHHHHHHHHHHHhcCC-CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 021467           14 HRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC   91 (312)
Q Consensus        14 ~~~~n~vk~~li~~~~~~-~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~   91 (312)
                      .++|.=+--.+++.+.+. ..+|||.=+|+|--...++.. +..+++.-|+|+++++..+++.+.+. ......+..|+.
T Consensus        34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN  112 (380)
T COG1867          34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDAN  112 (380)
T ss_pred             hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHH
Confidence            345444444455555533 579999999999655555544 44489999999999999999988762 122445555553


Q ss_pred             CCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467           92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus        92 ~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ..     +......||+|=.--        -.....++....+.++.||++.+|.-|..
T Consensus       113 ~l-----m~~~~~~fd~IDiDP--------FGSPaPFlDaA~~s~~~~G~l~vTATD~a  158 (380)
T COG1867         113 AL-----LHELHRAFDVIDIDP--------FGSPAPFLDAALRSVRRGGLLCVTATDTA  158 (380)
T ss_pred             HH-----HHhcCCCccEEecCC--------CCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence            31     111237899985422        22245567777788888999999965553

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.38  E-value=0.1  Score=45.97  Aligned_cols=108  Identities=15%  Similarity=0.073  Sum_probs=72.0

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +.+++|+.+||-||.++|........-  +-..|++++.|..+=.......+..   .++--+..|+....-   +...-
T Consensus       151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~K---YRmlV  224 (317)
T KOG1596|consen  151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAK---YRMLV  224 (317)
T ss_pred             ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchh---eeeee
Confidence            345669999999999999777666543  4457999999986544433322221   125556777765321   00012


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ...|+|++--      ...++.+.+.-|..-.||+||.|+++
T Consensus       225 gmVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  225 GMVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eeEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence            4577776543      23567788888999999999999988

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.27  E-value=1.5  Score=38.79  Aligned_cols=118  Identities=14%  Similarity=-0.046  Sum_probs=67.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+||=+|=+.-..+...+.....+++.+||++..++.-++..+..+.  +++.+..|+... +...   -.++||+++
T Consensus        44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~-LP~~---~~~~fD~f~  117 (243)
T PF01861_consen   44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDP-LPEE---LRGKFDVFF  117 (243)
T ss_dssp             TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred             cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEeccccc-CCHH---HhcCCCEEE
Confidence            6789999984433222222223567999999999999998888877653  388889998773 2111   248999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecCh---hHHHHHHHHh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS---STIWAKYQKN  159 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~---~~l~~~~~~~  159 (312)
                      +--.     .+.+.+.-++......||.-| ..++..-..   ...|..+++.
T Consensus       118 TDPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~  165 (243)
T PF01861_consen  118 TDPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRF  165 (243)
T ss_dssp             E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHH
T ss_pred             eCCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHH
Confidence            8763     567889999999999998766 444443333   2344455544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.18  E-value=0.063  Score=46.96  Aligned_cols=93  Identities=11%  Similarity=0.111  Sum_probs=57.4

Q ss_pred             CCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++.++||||.|.- =+..+.-  .-..+.+|.||++.+++.|+.....+ +....++.....-.. .+...+...++.||
T Consensus        78 ~~i~~LDIGvGAn-CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd  155 (292)
T COG3129          78 KNIRILDIGVGAN-CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD  155 (292)
T ss_pred             CceEEEeeccCcc-cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence            5678999998864 2222221  13458999999999999999988776 222223333221111 11111222468999


Q ss_pred             EEEeccchhhhcCCHHHHHHH
Q 021467          108 LVCCFQHLQMCFETEERARRL  128 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~  128 (312)
                      ++.|+-.+|.   +.+++.+.
T Consensus       156 ~tlCNPPFh~---s~~da~~g  173 (292)
T COG3129         156 ATLCNPPFHD---SAADARAG  173 (292)
T ss_pred             eEecCCCcch---hHHHHHhc
Confidence            9999999886   45555444

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.16  E-value=0.024  Score=43.55  Aligned_cols=32  Identities=25%  Similarity=0.205  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA   63 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis   63 (312)
                      +.....|||||+| .+..++...+..=.|+|.-
T Consensus        58 ~~~~FVDlGCGNG-LLV~IL~~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNG-LLVYILNSEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCch-HHHHHHHhCCCCccccccc
Confidence            3457999999999 5665555544367799874

; GO: 0008168 methyltransferase activity

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.09  E-value=0.18  Score=45.69  Aligned_cols=123  Identities=13%  Similarity=0.034  Sum_probs=80.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~---~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ...+||=+|-|.|+.++.-.++ ...++.-+|+....++..++-.+....   ..++....+|-..  +...+  +.++|
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~  196 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF  196 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence            4578999999999988766655 567899999999988888776655321   2347777776533  22222  35899


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~  158 (312)
                      |+|+.-..=--.---.--.+..++-+.+.||+||+++... +.-.+..++-+
T Consensus       197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~  247 (337)
T KOG1562|consen  197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK  247 (337)
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence            9998633200000001124677889999999999998775 44444444433

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=95.03  E-value=0.083  Score=48.35  Aligned_cols=117  Identities=18%  Similarity=0.247  Sum_probs=78.7

Q ss_pred             CEEEEECCCCCccHHHHHHc------------CC---------CeEEEEeCChHH--HHHHHHHHHhc------------
Q 021467           33 VTVCDLYCGAGVDVDKWETA------------LI---------ANYIGIDVATSG--IGEARDTWENQ------------   77 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~------------~~---------~~v~giDis~~~--i~~a~~r~~~~------------   77 (312)
                      .+||-||.|.|+.+..++..            ..         ..++.|||++-+  ++.........            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            69999999998766544321            01         389999998643  22222222211            


Q ss_pred             ----CCCceEEEEEcCCCCCchhhhhhh-cCCceeEEEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467           78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (312)
Q Consensus        78 ----~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~  149 (312)
                          ...+.+.|.+.|+......+.... .....|+|+..|.++-.| .+..+...+|.++...++||-.+++. .|.+
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS  246 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS  246 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence                235678999999987654221100 123689999999987665 55778899999999999999999887 3433

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.91  E-value=0.93  Score=40.80  Aligned_cols=113  Identities=13%  Similarity=0.042  Sum_probs=72.8

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhc---CCc
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG-IGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~-i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~---~~~  105 (312)
                      ...|+.||||-  |...+.......+..+|++... ++.-++.++..+  ...+..++.+|+. ......+...   ...
T Consensus        82 ~~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        82 IRQVVILGAGL--DTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA  158 (260)
T ss_pred             CcEEEEeCCcc--ccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence            35799999987  5555543322234555555444 444444454322  1234788899987 4443333221   123


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      --++++-.++.|  .+.+....+++.+.+...||+.+++...+.
T Consensus       159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP  200 (260)
T ss_pred             Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            447777888888  789999999999999999999999986543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PHA01634 hypothetical protein

Probab=94.86  E-value=0.19  Score=39.98  Aligned_cols=47  Identities=4%  Similarity=-0.193  Sum_probs=41.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      .+.+|+|+|.+-|..+..++..+...|+++++++...+..++..+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            67899999999997777777889999999999999999888877654

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=0.45  Score=42.20  Aligned_cols=110  Identities=18%  Similarity=0.180  Sum_probs=72.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .....+|+|+|+..-...++.+     ...+|+.+|+|...++...+.+...-....+.-+++|... .+.. ++ ..+.
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~-~~-~~~~  154 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE-LP-RGGR  154 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc-cc-CCCe
Confidence            3679999999998655544443     2368999999999988765554433233445556666432 1110 11 1122


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ==.+....++.+  .+.+....+|..+...|+||-+|++-
T Consensus       155 Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         155 RLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             EEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence            223344455666  67888999999999999999999865

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=94.59  E-value=0.098  Score=48.36  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHH-------HHHHHhcCC-CceEEEEEcCCCCCchhhhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a-------~~r~~~~~~-~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      +++|.-|+|-=-|||+.+...+.-+. .|+|.||+-.++...       +.++++.+. ..-+....+|....++.    
T Consensus       206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r----  280 (421)
T KOG2671|consen  206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR----  280 (421)
T ss_pred             cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence            45899999999999988877655554 899999998888732       233343332 22356778888877664    


Q ss_pred             hcCCceeEEEeccch-------------------------hhhcCC----HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          101 EKANQADLVCCFQHL-------------------------QMCFET----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       101 ~~~~~fD~V~~~~~l-------------------------h~~~~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                       ....||.|+|--..                         |+--..    ..-....|.-.++.|..||++++..|..
T Consensus       281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~  357 (421)
T KOG2671|consen  281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI  357 (421)
T ss_pred             -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence             35689999994321                         110000    1222455667788999999999887754

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.57  E-value=0.9  Score=43.15  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=72.3

Q ss_pred             CCCEEEEECCCCCccHHHHHH----c----CCCeEEEEeC----ChHHHHHHHHHHHhcC--CCceEEEEEc--C-CCCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWET----A----LIANYIGIDV----ATSGIGEARDTWENQR--KNFIAEFFEA--D-PCAE   93 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~----~----~~~~v~giDi----s~~~i~~a~~r~~~~~--~~~~~~f~~~--D-~~~~   93 (312)
                      +..+|+|+|.|.|.--..+.+    .    +.-+++||+.    +...++.+.+++....  .+.+.+|...  + ....
T Consensus       110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l  189 (374)
T PF03514_consen  110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL  189 (374)
T ss_pred             cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence            557899999999953322222    2    2348999999    8889999888875421  1223444332  2 2221


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCH---H-HHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV  160 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~---~-~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~  160 (312)
                      .. ..+...++..=+|.|.+.+|++....   + ....+|+ ..+.|+|.-..++-   -.|+..+..|+.+.+
T Consensus       190 ~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal  261 (374)
T PF03514_consen  190 DP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHNSPSFLERFREAL  261 (374)
T ss_pred             CH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence            11 11222335565777888899865322   1 2344555 55588998554443   223345666665543

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.39  E-value=0.2  Score=42.75  Aligned_cols=110  Identities=22%  Similarity=0.099  Sum_probs=60.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHH----HHHH-HHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARDT-WENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~----a~~r-~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++++.+|+|+=.|.|....-+...  ....|+++-..+...-.    .+.+ .......-+.+.+-.+.....       
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-------  118 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-------  118 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-------
Confidence            348899999999999766655443  22367766554431111    1100 000000000122222222211       


Q ss_pred             cCCceeEEEecc---chhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~---~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .....|++....   .+|.-+.+...+..+...+.+.|||||.+.+.
T Consensus       119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence            234566655422   24544555677889999999999999999986

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=94.23  E-value=0.068  Score=44.19  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHH-HHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~-a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +.+++=+|...-..=...++.+..++.-++.++--+++ .+.|..             .+...++...+....++||.++
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a   68 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA   68 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence            45677777664422222234467778888876522211 111110             1111123223333468899999


Q ss_pred             eccchhhh--------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~--------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |..++.+.        .. ...-...+.++.++|||||.+++.+|-.
T Consensus        69 s~~siEh~GLGRYGDPid-p~Gdl~~m~~i~~vLK~GG~L~l~vPvG  114 (177)
T PF03269_consen   69 SFSSIEHFGLGRYGDPID-PIGDLRAMAKIKCVLKPGGLLFLGVPVG  114 (177)
T ss_pred             eechhccccccccCCCCC-ccccHHHHHHHHHhhccCCeEEEEeecC
Confidence            98877443        11 1223566788999999999999997765

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.16  E-value=0.05  Score=52.71  Aligned_cols=110  Identities=17%  Similarity=0.240  Sum_probs=66.3

Q ss_pred             CEEEEECCCCCccHHHHHHcCCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~--~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..|+|+..|.||++..+...+..  +|+-+ ..+..+..--+|    +.   +-. -.|-++ .+.    .-+.+||+|.
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG~-yhDWCE-~fs----TYPRTYDLlH  432 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IGV-YHDWCE-AFS----TYPRTYDLLH  432 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---chh-ccchhh-ccC----CCCcchhhee
Confidence            47999999999999988765532  22222 222222222222    11   111 123222 121    1468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~  159 (312)
                      +...+-. ..+.-.+...|-++-|.|||||.+|+-  |.-.++.++++.
T Consensus       433 A~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i  478 (506)
T PF03141_consen  433 ADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKI  478 (506)
T ss_pred             hhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHH
Confidence            8875433 244566788999999999999998864  555555665543

; GO: 0008168 methyltransferase activity

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.14  E-value=0.29  Score=43.58  Aligned_cols=112  Identities=17%  Similarity=0.002  Sum_probs=63.4

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh----cCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~----~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..+||++|.|+|-....++.....+|+..|+..........+-..    +..+..+.....+=....-.+..  .+..||
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~--~~~~~D  164 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR--LPNPFD  164 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc--cCCccc
Confidence            457999999999555555555667999999877655433332111    11111222222211111111111  112299


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|++..++    -+++..+.++..++..|-.+|++++.++=.
T Consensus       165 lilasDvv----y~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  165 LILASDVV----YEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             EEEEeeee----ecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            99998853    335556777888888898888666665443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.13  E-value=0.066  Score=48.54  Aligned_cols=96  Identities=20%  Similarity=0.048  Sum_probs=69.2

Q ss_pred             CCCEEEEECCCCCccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+..|.|+-.|-|.+.. .+..++...|+++|.++.+++..++..+.++...+...+.+|.....       +....|-|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------~~~~AdrV  266 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------PRLRADRV  266 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------ccccchhe
Confidence            56789999999999888 66777889999999999999999999888765455566667765544       35677777


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY  141 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~  141 (312)
                      ....    .-.+++....    +.++|||.|-
T Consensus       267 nLGL----lPSse~~W~~----A~k~Lk~egg  290 (351)
T KOG1227|consen  267 NLGL----LPSSEQGWPT----AIKALKPEGG  290 (351)
T ss_pred             eecc----ccccccchHH----HHHHhhhcCC
Confidence            6544    2233443433    4457887443

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.10  E-value=0.16  Score=44.48  Aligned_cols=116  Identities=18%  Similarity=0.226  Sum_probs=72.3

Q ss_pred             CCEEEEECCCCCccHHHHHHc-------C---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-hh
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-------L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ  100 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-------~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~~  100 (312)
                      -.+|.|||...|.-..-+.+.       .   ...+++||+-+-        ..-.+    +.-+++|++.....+. +.
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~G----V~qlq~DIT~~stae~Ii~  109 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEG----VIQLQGDITSASTAEAIIE  109 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCc----eEEeecccCCHhHHHHHHH
Confidence            358999999999544333322       1   113999999642        12222    6678999988654332 22


Q ss_pred             h-cCCceeEEEeccc-----hhhhcCC---HHHHHHHHHHHHhccCCCcEEEEEecC---hhHHHHHHHHhH
Q 021467          101 E-KANQADLVCCFQH-----LQMCFET---EERARRLLQNVSSLLKPGGYFLGITPD---SSTIWAKYQKNV  160 (312)
Q Consensus       101 ~-~~~~fD~V~~~~~-----lh~~~~~---~~~~~~~l~~i~~~LkpGG~~i~~~p~---~~~l~~~~~~~~  160 (312)
                      . ...+.|+|+|-.+     +|.+ ..   .+-+..+|.-...+|||||.|+.-+--   ...|+..+++..
T Consensus       110 hfggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff  180 (294)
T KOG1099|consen  110 HFGGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFF  180 (294)
T ss_pred             HhCCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHh
Confidence            1 2458999999765     6652 11   123355566677899999999977443   355666666543

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.04  E-value=0.2  Score=48.83  Aligned_cols=119  Identities=18%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhcCC----CCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc
Q 021467           18 EFAKTALIKIYSHP----YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (312)
Q Consensus        18 n~vk~~li~~~~~~----~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~   88 (312)
                      .-|...|+++-...    ...|+=+|.|.|-...+.+++     +..++++++-++.++.....+-- .....+++.+..
T Consensus       350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~  428 (649)
T KOG0822|consen  350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISS  428 (649)
T ss_pred             HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hhhcCeeEEEec
Confidence            44555565553321    346888999999766555443     34489999999999887766322 122345999999


Q ss_pred             CCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        89 D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+.....      +..+.|++++-. +. +|.+-+--.+.|.-+.+.|||+|+.|=.
T Consensus       429 DMR~w~a------p~eq~DI~VSEL-LG-SFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  429 DMRKWNA------PREQADIIVSEL-LG-SFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             cccccCC------chhhccchHHHh-hc-cccCccCCHHHHHHHHhhcCCCceEccc
Confidence            9988663      347899887532 11 4555666678999999999999987633

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.43  E-value=0.088  Score=52.09  Aligned_cols=106  Identities=18%  Similarity=0.197  Sum_probs=62.0

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~  103 (312)
                      ++.+...||||||..|+-+.-..+.  ...-|+|+|+-+.-         ..   ..+.-++.|++.......+..  ..
T Consensus        41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p~---~~c~t~v~dIttd~cr~~l~k~l~t  108 (780)
T KOG1098|consen   41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------PI---PNCDTLVEDITTDECRSKLRKILKT  108 (780)
T ss_pred             cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------cC---CccchhhhhhhHHHHHHHHHHHHHh
Confidence            4568889999999999766554443  34579999997631         11   114444555554332221110  23


Q ss_pred             CceeEEEeccc-------hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQH-------LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~-------lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      -+.|+|+.-.+       .|.+|....-.-..|+-....|+.||.|+--
T Consensus       109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk  157 (780)
T KOG1098|consen  109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK  157 (780)
T ss_pred             CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence            45588776433       2333333333455677778899999996643

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=92.96  E-value=1.1  Score=38.40  Aligned_cols=105  Identities=13%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~  104 (312)
                      ....|++.|.-.||.+...+..     ...+|+|+||+-..++-+..+.  .    .+.|++++..+.....+.+.. .+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--p----~i~f~egss~dpai~eqi~~~~~~  142 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--P----DILFIEGSSTDPAIAEQIRRLKNE  142 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--C----CeEEEeCCCCCHHHHHHHHHHhcC
Confidence            4478999999999877765542     2358999999977665544432  2    289999998887655443322 23


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .--+.+|..+-|.    .+...+-|+-...+|..|-++++-
T Consensus       143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe  179 (237)
T COG3510         143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE  179 (237)
T ss_pred             CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence            3345666666666    455666778888899999998876

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=92.82  E-value=0.21  Score=47.72  Aligned_cols=57  Identities=16%  Similarity=0.029  Sum_probs=44.5

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD   89 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D   89 (312)
                      ..|||+|.|+|-.......++...+++++.=..|.+.|++....++...++..+..-
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr  124 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR  124 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence            469999999994333444557789999999999999999998888766666665543

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=92.82  E-value=0.24  Score=47.65  Aligned_cols=109  Identities=13%  Similarity=0.070  Sum_probs=64.8

Q ss_pred             CCEEEEECCCCCccHHHHH---HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCcee
Q 021467           32 YVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQAD  107 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~---~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~fD  107 (312)
                      ...++|+|.|.|.......   ......|+.||.|..|+.......++.. ...-.++...+.....   ++ +....||
T Consensus       201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~---~pi~~~~~yD  276 (491)
T KOG2539|consen  201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQR---LPIDIKNGYD  276 (491)
T ss_pred             hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhccc---CCCCccccee
Confidence            3578889988774433222   1234579999999999999887765511 0001111110111111   11 0246699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHH-HHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQN-VSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~-i~~~LkpGG~~i~~  145 (312)
                      +|+|.+.+|.. .+........++ ..+..++||.++++
T Consensus       277 lvi~ah~l~~~-~s~~~R~~v~~s~~r~~~r~g~~lViI  314 (491)
T KOG2539|consen  277 LVICAHKLHEL-GSKFSRLDVPESLWRKTDRSGYFLVII  314 (491)
T ss_pred             eEEeeeeeecc-CCchhhhhhhHHHHHhccCCCceEEEE
Confidence            99999999874 444444444444 45677889998887

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=92.75  E-value=0.2  Score=45.97  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      +++||-||.|+...-+..++...+.++|+++.+.+.-+.++.        ....+|+.+.... .+  +. .+|+++..+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence            799999999999998888888889999999998777666664        4678888876543 22  22 599998866


Q ss_pred             chhh--------hcCCHHH-HHHHHHHHHhccCCCcEEEEEecC
Q 021467          114 HLQM--------CFETEER-ARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       114 ~lh~--------~~~~~~~-~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ..+-        .+.+... +-.-+-.+.+.++|.-.++=-+++
T Consensus        70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~  113 (335)
T PF00145_consen   70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG  113 (335)
T ss_dssp             --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred             CCceEeccccccccccccchhhHHHHHHHhhccceEEEecccce
Confidence            5332        1222211 222233345567896544433444

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=92.62  E-value=0.55  Score=44.51  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=65.1

Q ss_pred             CCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhh--cCC
Q 021467           30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN  104 (312)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~--~~~  104 (312)
                      .++.+||.+|||. |..+..+++... .+++++|.+++.++.+++...       +..+.  .... .+...+..  ...
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~~  253 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGGR  253 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCCC
Confidence            4678999999987 666666666644 469999999999888877531       22221  1111 12221111  224


Q ss_pred             ceeEEEeccchh-------h----hcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          105 QADLVCCFQHLQ-------M----CFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 ~fD~V~~~~~lh-------~----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      .+|+|+..-.-+       .    .+....+....+..+.++|+++|.++...
T Consensus       254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            689887643211       1    01111223456788889999999998763

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=92.29  E-value=0.55  Score=41.49  Aligned_cols=75  Identities=13%  Similarity=0.055  Sum_probs=45.2

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcCCC-----ceEEEEEcCCCCCchhhhhhhcCC
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~---~r~~~~~~~-----~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .+|||.-+|-|.|+.-++..+. +|++++-|+.+-...+   +++......     .+++++++|..+.-     ..++.
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-----~~~~~  150 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-----RQPDN  150 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-----CCHSS
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-----hhcCC
Confidence            4899999999999998876654 8999999987655433   444433222     35899999986621     11468


Q ss_pred             ceeEEEecc
Q 021467          105 QADLVCCFQ  113 (312)
Q Consensus       105 ~fD~V~~~~  113 (312)
                      +||+|..--
T Consensus       151 s~DVVY~DP  159 (234)
T PF04445_consen  151 SFDVVYFDP  159 (234)
T ss_dssp             --SEEEE--
T ss_pred             CCCEEEECC
Confidence            999999876

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.00  E-value=1.3  Score=40.48  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=60.7

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCce
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~f  106 (312)
                      ..++.+||..|||. |..+..+++....++++++.+++..+.+++.    +    +..+..+ ........+ ......+
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g----~~~~~~~-~~~~~~~~~~~~~~~~~  233 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G----ADEVLNS-LDDSPKDKKAAGLGGGF  233 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C----CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence            34678999988763 5566666666556899999999888777542    1    1111111 111111111 1134679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|+.....          ...++.+.+.|+++|.++...
T Consensus       234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence            988754311          235777889999999998763

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.63  E-value=0.91  Score=44.85  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             CCCEEEEECCCCCcc-HHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-------------chh
Q 021467           31 PYVTVCDLYCGAGVD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE   96 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~-l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-------------~~~   96 (312)
                      ++.+|+=+|||.=|. +...++.....|+++|.+++-++++++-    +    +++...|..+.             ++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhHH
Confidence            688999999997543 3444555445899999999998888763    2    33333322111             100


Q ss_pred             h----hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467           97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        97 ~----~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      .    .+...-..+|+|+.......    ......+.+...+.+||||.++....
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0    00111146999987663211    11122335888899999999886643

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.25  E-value=1.7  Score=33.41  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHH
Q 021467           53 LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV  132 (312)
Q Consensus        53 ~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i  132 (312)
                      ....|+.+|.+++.++.+++..        ..++.+|..+........  -...|.|++..      .+. .....+...
T Consensus        20 ~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~------~~d-~~n~~~~~~   82 (116)
T PF02254_consen   20 GGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAG--IEKADAVVILT------DDD-EENLLIALL   82 (116)
T ss_dssp             TTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTT--GGCESEEEEES------SSH-HHHHHHHHH
T ss_pred             CCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcC--ccccCEEEEcc------CCH-HHHHHHHHH
Confidence            4458999999999988777654        568899998866543332  25688777544      122 233344455


Q ss_pred             HhccCCCcEEEEEecChhH
Q 021467          133 SSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       133 ~~~LkpGG~~i~~~p~~~~  151 (312)
                      .+.+-|...++....+.+.
T Consensus        83 ~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   83 ARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             HHHHTTTSEEEEEESSHHH
T ss_pred             HHHHCCCCeEEEEECCHHH
Confidence            5777788888888777644

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=91.00  E-value=1.4  Score=37.20  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCC-EEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhhhc--
Q 021467           31 PYV-TVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEK--  102 (312)
Q Consensus        31 ~~~-~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~~~--  102 (312)
                      ++. .|+.||||-  |...|...   +...++-+|... +++.-++.++.....  ...+++.+|+.+..+...+...  
T Consensus        77 ~~~~qvV~LGaGl--DTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~  153 (183)
T PF04072_consen   77 PGARQVVNLGAGL--DTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGF  153 (183)
T ss_dssp             TTESEEEEET-TT----HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT
T ss_pred             CCCcEEEEcCCCC--CchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCC
Confidence            555 899999997  45544332   234555666543 344444444433111  1245799999986665555422  


Q ss_pred             -CCceeEEEeccchhhhcCCHHHHHHHHHHHH
Q 021467          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVS  133 (312)
Q Consensus       103 -~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~  133 (312)
                       ...--++++-.++.|  .+.++...+++.++
T Consensus       154 ~~~~ptl~i~Egvl~Y--l~~~~~~~ll~~ia  183 (183)
T PF04072_consen  154 DPDRPTLFIAEGVLMY--LSPEQVDALLRAIA  183 (183)
T ss_dssp             -TTSEEEEEEESSGGG--S-HHHHHHHHHHH-
T ss_pred             CCCCCeEEEEcchhhc--CCHHHHHHHHHHhC
Confidence             345668888888999  77888888888763

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=90.96  E-value=0.37  Score=43.52  Aligned_cols=54  Identities=17%  Similarity=0.004  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHH
Q 021467           15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG   68 (312)
Q Consensus        15 ~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~   68 (312)
                      .+.+.++..+-.+..-.+.+|||+|||.|-.-......+...+...|.+.+.++
T Consensus       100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            344444433333444578999999999995555554556578899999988773

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.93  E-value=2.2  Score=42.16  Aligned_cols=115  Identities=12%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +...|.|..||+|+.+......     ....++|.+....+...|+....-++.. .......+|-...+-  ..  ...
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d--~~--~~~  292 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKE--WE--NEN  292 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcc--cc--ccc
Confidence            5578999999999988754331     2246999999999999888765332211 111222333322110  00  124


Q ss_pred             ceeEEEeccchhh--------------------hcC-CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQM--------------------CFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~--------------------~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+++.....                    ++. ....-..++..+..+|++||...++.|+.
T Consensus       293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g  358 (501)
T TIGR00497       293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG  358 (501)
T ss_pred             cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence            5777665432110                    000 01233567888999999999877775544

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=90.63  E-value=0.53  Score=38.40  Aligned_cols=107  Identities=15%  Similarity=0.043  Sum_probs=48.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..-..-|||+|=|+|+.-..+... +..+++.+|-.-.+--.+.   .     ..-.++.+|+.+. +.. +.....+.-
T Consensus        26 ~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~---P-----~~~~~ilGdi~~t-l~~-~~~~g~~a~   95 (160)
T PF12692_consen   26 AGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST---P-----PEEDLILGDIRET-LPA-LARFGAGAA   95 (160)
T ss_dssp             TT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----------GGGEEES-HHHH-HHH-HHHH-S-EE
T ss_pred             cCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC---C-----chHheeeccHHHH-hHH-HHhcCCceE
Confidence            334567999999999877666554 6678999997532110000   0     0124666766442 111 111234555


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++.+-...|+--.+...+..+-.-+..+|.|||+++-.
T Consensus        96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~  133 (160)
T PF12692_consen   96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG  133 (160)
T ss_dssp             EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            66655555551111112233344567899999998854

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=90.62  E-value=6.6  Score=32.76  Aligned_cols=61  Identities=20%  Similarity=0.112  Sum_probs=39.4

Q ss_pred             EEcCCCCCchhhhhhhcCCceeEEEeccchhh---------hcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           86 FEADPCAENFETQMQEKANQADLVCCFQHLQM---------CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        86 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~---------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ...|++...-  ........||.|+-+|..--         .-.+..-+..+++++..+|+++|.+.+|..+
T Consensus        58 ~~VDat~l~~--~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~  127 (166)
T PF10354_consen   58 HGVDATKLHK--HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD  127 (166)
T ss_pred             cCCCCCcccc--cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3456655332  11113578999998885211         0012345688999999999999999998444

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.41  E-value=0.43  Score=42.61  Aligned_cols=60  Identities=5%  Similarity=0.022  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhcCC-CCEEEEECCCCCccHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 021467           17 YEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus        17 ~n~vk~~li~~~~~~-~~~VLDlGCG~G~~l~~~~~~---------~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      .+|+.........+. ..+|+|+|.|+|..+..++..         ...+|+-||+|+.+.+..++++..
T Consensus         3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            355555554443332 379999999999877666543         235899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.06  E-value=1.5  Score=40.48  Aligned_cols=99  Identities=10%  Similarity=0.059  Sum_probs=61.7

Q ss_pred             CCCCEEEEECCCCCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC---chhhhhhh--c
Q 021467           30 HPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE---NFETQMQE--K  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~---~~~~~~~~--~  102 (312)
                      +++.+||=+|+|.=+ .+..++++ +..+|+.+|+++.-|+.|++ +..       +.+.-+....   .+.+....  .
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-------TVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-------eEEeeccccccHHHHHHHHHhhcc
Confidence            478999999999744 34455554 78899999999999999998 321       1111111111   11111111  1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ...+|+.+-...++          ..++.....+|+||.+++..
T Consensus       240 ~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  240 KKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             ccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence            24588876555433          34555677999999977663

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.78  E-value=8.2  Score=35.44  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             CCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhhh---cCC
Q 021467           32 YVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQE---KAN  104 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~~~---~~~  104 (312)
                      ...|+-||||-  |+..+.-...  ..|+-+|.= +.++.=++.+++.+-  ....+++..|+...+....+..   ...
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~P-evi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLP-EVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCCc-HHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            36899999986  5555533322  345555553 334433344444331  1247899999997666555542   123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      .--++++-..+.|  .+++...+++..|...+.||-.++...+.....
T Consensus       170 ~pt~~iaEGLl~Y--L~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~  215 (297)
T COG3315         170 RPTLWIAEGLLMY--LPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSL  215 (297)
T ss_pred             CCeEEEecccccc--CCHHHHHHHHHHHHHhCCCCceEEEeccccHHH
Confidence            3447788888888  789999999999999999999999887633333

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=89.56  E-value=0.57  Score=43.36  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=49.4

Q ss_pred             EEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 021467           35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH  114 (312)
Q Consensus        35 VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~  114 (312)
                      |+||-||.|+...-+..++..-+.++|+++.+++.-+.++..       ..+.+|+.+....+     -..+|+++..+.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~P   68 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGFP   68 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence            689999999988888778876677899999888776666532       24567776644311     135899987654


Q ss_pred             h
Q 021467          115 L  115 (312)
Q Consensus       115 l  115 (312)
                      .
T Consensus        69 C   69 (315)
T TIGR00675        69 C   69 (315)
T ss_pred             C
Confidence            3

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.70  E-value=1.1  Score=41.72  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ..+++||-||.|+...-+..++..-+.++|+++.+++.-+.++..      ..++..|+........   ....+|+++.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~---~~~~~Dvlig   73 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL---RKSDVDVLIG   73 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc---cccCCCEEEe
Confidence            468999999999988888788888889999999888776666543      3456667655333110   1117899998


Q ss_pred             ccchh
Q 021467          112 FQHLQ  116 (312)
Q Consensus       112 ~~~lh  116 (312)
                      .+..+
T Consensus        74 GpPCQ   78 (328)
T COG0270          74 GPPCQ   78 (328)
T ss_pred             CCCCc
Confidence            77654

>PTZ00357 methyltransferase; Provisional

Probab=88.69  E-value=1.5  Score=44.39  Aligned_cols=107  Identities=19%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             CEEEEECCCCCccHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhc-CC-------CceEEEEEcCCCCCchhh--
Q 021467           33 VTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQ-RK-------NFIAEFFEADPCAENFET--   97 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~----~-~~~v~giDis~~~i~~a~~r~~~~-~~-------~~~~~f~~~D~~~~~~~~--   97 (312)
                      ..|+=+|+|.|......+++    + ..++++|+-++.++.....+.... ..       +.+++++..|+.......  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            35899999999776655544    2 237999999976554444443221 11       235899999998864321  


Q ss_pred             -h--hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC----CcE
Q 021467           98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY  141 (312)
Q Consensus        98 -~--~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp----GG~  141 (312)
                       .  .+..-+++|+|++-. |- +|.+-+--.+.|..+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSEL-LG-SFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSEL-LG-SLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhh-hc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence             0  011124799998722 11 456666667788888888887    776

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=88.24  E-value=1.5  Score=40.71  Aligned_cols=95  Identities=13%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             CCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+||=.|||. |..+..+++. +..+++++|.+++-++.|++.-        +.. ..|..+.++..... ..+.+|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lG--------a~~-vi~~~~~~~~~~~~-~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMG--------ADK-LVNPQNDDLDHYKA-EKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcC--------CcE-EecCCcccHHHHhc-cCCCCCE
Confidence            678999999863 3344455554 4447999999999888776532        111 11222222211111 1245898


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+-.-.-          ...+....++|++||.++..
T Consensus       239 vid~~G~----------~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        239 SFEVSGH----------PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             EEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence            8754421          23456667789999999876

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.62  E-value=5.5  Score=37.34  Aligned_cols=98  Identities=15%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             CCCEEEEECCCCCccH-HHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CCcee
Q 021467           31 PYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l-~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~~fD  107 (312)
                      ++.+|+=+|||+=|.+ ..+++. +..+++.+|.+++-++.|++.....       .+.-...+.......... ...+|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D  240 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD  240 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence            4459999999985555 444443 6789999999999999998865321       111111111111111111 23699


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+-.-.          ....+..+.+++||||.+...
T Consensus       241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         241 VVIEAVG----------SPPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence            9875553          223677888899999999877

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=86.64  E-value=1.7  Score=40.94  Aligned_cols=42  Identities=14%  Similarity=0.010  Sum_probs=32.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD   72 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~   72 (312)
                      +-..|.|+|.|.|.....+.-...-.|++||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            446899999999966665555555689999999877776655

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=86.51  E-value=5.6  Score=34.67  Aligned_cols=98  Identities=23%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCcee
Q 021467           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~fD  107 (312)
                      .++.+||..|+|. |..+..+++....++++++.+++..+.+++...       ...  .|.........+ ......+|
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~-------~~~--~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA-------DHV--IDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-------cee--ccCCcCCHHHHHHHhcCCCCC
Confidence            4788999999985 555556666555799999999887776644311       111  122121111111 11246799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +|+....-      .    ..+..+.+.|+++|.++...
T Consensus       204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             EEEECCCC------H----HHHHHHHHhcccCCEEEEEc
Confidence            98865421      1    34666778899999998763

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK10458 DNA cytosine methylase; Provisional

Probab=86.20  E-value=2.3  Score=41.54  Aligned_cols=81  Identities=11%  Similarity=0.108  Sum_probs=51.9

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-----------hhh
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-----------QMQ  100 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~-----------~~~  100 (312)
                      ..+++|+-||.||...-+..++...+.++|+++.+.+.-+.++...+   ....+..|+.+.....           .+.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhCccccccccchhhhhhhhh
Confidence            46999999999999888877788778899999877665555542111   1334556766543210           000


Q ss_pred             hcCCceeEEEeccch
Q 021467          101 EKANQADLVCCFQHL  115 (312)
Q Consensus       101 ~~~~~fD~V~~~~~l  115 (312)
                      ......|+++..+..
T Consensus       165 ~~~p~~DvL~gGpPC  179 (467)
T PRK10458        165 QHIPDHDVLLAGFPC  179 (467)
T ss_pred             ccCCCCCEEEEcCCC
Confidence            011357998876654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=86.13  E-value=3.6  Score=38.65  Aligned_cols=60  Identities=10%  Similarity=0.041  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~---------~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      .|+...+-+.-.+....++++|.|+|..+..+++.         ...+|.-|++|++..+.-+++++..
T Consensus        64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            55544433333335678999999999877666543         3568999999999988877776543

>PRK11524 putative methyltransferase; Provisional

Probab=85.24  E-value=1.1  Score=40.73  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCCchhhhhhhcCCceeEEEeccchh----hh-----cC---CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQ----MC-----FE---TEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        83 ~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh----~~-----~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ..++++|+.+.-  ..+  ++++||+|++.-...    +.     ..   ..+-+...+.++.++|||||.+++.+.
T Consensus         9 ~~i~~gD~~~~l--~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          9 KTIIHGDALTEL--KKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CEEEeccHHHHH--Hhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            457788876521  112  457899999853311    00     00   012246789999999999999998643

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.90  E-value=7.1  Score=35.70  Aligned_cols=81  Identities=12%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch----hhhhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~----~~~~~~~~  103 (312)
                      .+..||==|.|.|-   .+..+++.+ ..++..|+.++..++..+..+..+   ++..+.+|+++..-    ...+...-
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            57889999998882   223333334 489999999999999888887654   58899999988532    12233345


Q ss_pred             CceeEEEeccch
Q 021467          104 NQADLVCCFQHL  115 (312)
Q Consensus       104 ~~fD~V~~~~~l  115 (312)
                      +..|+++.+.++
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            789999988764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.45  E-value=17  Score=31.15  Aligned_cols=79  Identities=18%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHHhcCCCceEEEEEcC
Q 021467           31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD   89 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~-------------------~~i~~a~~r~~~~~~~~~~~f~~~D   89 (312)
                      .+.+||=+|||. |..+. .+...+..+++.+|.+.                   .-.+.+.++++..+...+++.+...
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            457899999984 44333 44455888999999873                   2223444555544433445444444


Q ss_pred             CCCCchhhhhhhcCCceeEEEecc
Q 021467           90 PCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        90 ~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      +....+..    .-..+|+|++..
T Consensus       100 i~~~~~~~----~~~~~D~Vi~~~  119 (202)
T TIGR02356       100 VTAENLEL----LINNVDLVLDCT  119 (202)
T ss_pred             CCHHHHHH----HHhCCCEEEECC
Confidence            43322211    125799987654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=83.77  E-value=2.6  Score=32.88  Aligned_cols=84  Identities=23%  Similarity=0.298  Sum_probs=53.3

Q ss_pred             CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCceeEEEeccchhhhcC
Q 021467           43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMCFE  120 (312)
Q Consensus        43 G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~fD~V~~~~~lh~~~~  120 (312)
                      |..+..+++....+++++|.++.-++.+++....       .+  .|..+.++.+.+..  ....+|+|+-.-.      
T Consensus         3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g------   67 (130)
T PF00107_consen    3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HV--IDYSDDDFVEQIRELTGGRGVDVVIDCVG------   67 (130)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EE--EETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------cc--ccccccccccccccccccccceEEEEecC------
Confidence            4445555665448999999999988888764311       12  22333334333322  1247999875542      


Q ss_pred             CHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          121 TEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       121 ~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                          ....++...++|++||.++..
T Consensus        68 ----~~~~~~~~~~~l~~~G~~v~v   88 (130)
T PF00107_consen   68 ----SGDTLQEAIKLLRPGGRIVVV   88 (130)
T ss_dssp             ----SHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----cHHHHHHHHHHhccCCEEEEE
Confidence                134577777899999999987

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=83.56  E-value=6.1  Score=36.68  Aligned_cols=92  Identities=5%  Similarity=-0.072  Sum_probs=55.5

Q ss_pred             cCCCCEEEEECCCCCccH-HHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDV-DKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..++.+||=+|||.=|.+ ..+++.  +..+++++|.+++-++.|++ .   +    ... ..+    .+.     ....
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~----~~~-~~~----~~~-----~~~g  222 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D----ETY-LID----DIP-----EDLA  222 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C----cee-ehh----hhh-----hccC
Confidence            357889999998754433 344443  45689999999887777754 1   1    111 111    110     1225


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-.-.-.       .....+....++|++||+++..
T Consensus       223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence            88887433210       0134577777899999999865

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.23  E-value=9.8  Score=36.14  Aligned_cols=118  Identities=15%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHh-------cCC-CceEEEEEcCC
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN-------QRK-NFIAEFFEADP   90 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~-------~~~-~~~~~f~~~D~   90 (312)
                      +.++.-+.-+.++....|+|.|-|+.....+.. +...-+|+++....-+.|......       .+. ...+..++++.
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf  260 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF  260 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence            333333344568899999999999876655443 556778999887766665544322       122 34577888887


Q ss_pred             CCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ........+   ....++|+++.+   .|+ ++...+ +.++..-+++|-+++-+
T Consensus       261 ~~~~~v~eI---~~eatvi~vNN~---~Fd-p~L~lr-~~eil~~ck~gtrIiS~  307 (419)
T KOG3924|consen  261 LDPKRVTEI---QTEATVIFVNNV---AFD-PELKLR-SKEILQKCKDGTRIISS  307 (419)
T ss_pred             CCHHHHHHH---hhcceEEEEecc---cCC-HHHHHh-hHHHHhhCCCcceEecc
Confidence            665443222   356888888773   333 443333 34888899999998866

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=83.22  E-value=4.9  Score=39.09  Aligned_cols=117  Identities=15%  Similarity=0.031  Sum_probs=68.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh--hhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET--QMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~--~~~~~~~~fD  107 (312)
                      .+..+|=+|-|.|+....+... +..+++++.+.++|++.|+..+.-.... +......|.... +..  +....+..||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~-~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDF-LQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHH-HHHHhhccccccCCc
Confidence            3467888888888665554333 5579999999999999998865321110 122222222110 000  0111356788


Q ss_pred             EEEeccc---hhhh--cCCHHHHHHHHHHHHhccCCCcEEEEE--ecCh
Q 021467          108 LVCCFQH---LQMC--FETEERARRLLQNVSSLLKPGGYFLGI--TPDS  149 (312)
Q Consensus       108 ~V~~~~~---lh~~--~~~~~~~~~~l~~i~~~LkpGG~~i~~--~p~~  149 (312)
                      ++...-.   .|-+  --..--+..+|..+...|.|-|.|++-  ++|.
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            8765210   1111  111223578899999999999999876  4444

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=83.14  E-value=12  Score=37.95  Aligned_cols=103  Identities=12%  Similarity=0.046  Sum_probs=66.3

Q ss_pred             CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|+=+|+|. |..+.+.+......++.+|.+++.++.+++.    +    ...+.+|+++.......  .-...|++++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~vv~  470 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA--GAEKAEAIVI  470 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence            5677788876 3344444444455899999999998887652    2    56789999886553322  2356787765


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      ..      .+.+........ .+.+.|...++...-|....
T Consensus       471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~  504 (601)
T PRK03659        471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEA  504 (601)
T ss_pred             Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHH
Confidence            44      334434444443 45578888888887776554

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.88  E-value=13  Score=29.02  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=56.4

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ..+|.++|-|.=-+..+.+......++++||.+.       +.. .+    +.+..-|+++..+.-     -...|+|.+
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~g----~~~v~DDitnP~~~i-----Y~~A~lIYS   76 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-EG----LRFVVDDITNPNISI-----YEGADLIYS   76 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-cc----ceEEEccCCCccHHH-----hhCccceee
Confidence            3499999998766666666555568999999875       222 23    789999999876521     245777764


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .-       ....+...+-.+++.++  ..+++.
T Consensus        77 iR-------pppEl~~~ildva~aVg--a~l~I~  101 (129)
T COG1255          77 IR-------PPPELQSAILDVAKAVG--APLYIK  101 (129)
T ss_pred             cC-------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence            33       34445555555666554  344444

>PRK13699 putative methylase; Provisional

Probab=81.30  E-value=1.7  Score=38.26  Aligned_cols=59  Identities=12%  Similarity=0.088  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCchhhhhhhcCCceeEEEeccchh----hh-------cCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQ----MC-------FETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        84 ~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh----~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +++++|+.+.  ...+  +++++|+|+..-..-    +.       -...+-....+.++.|+|||||.+++.+
T Consensus         3 ~l~~gD~le~--l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~   72 (227)
T PRK13699          3 RFILGNCIDV--MARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY   72 (227)
T ss_pred             eEEechHHHH--HHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            4566776542  1111  567788887753211    00       0112335688999999999999988643

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.91  E-value=34  Score=29.32  Aligned_cols=113  Identities=11%  Similarity=-0.006  Sum_probs=62.6

Q ss_pred             CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhcCC
Q 021467           31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKAN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~~~  104 (312)
                      ++.+||=.|++.|  ..+.+.+.....+|++++-+++.++.+.+.....+   .+.++.+|+.+..-... +   ...-+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            3568999998654  23333333344589999999887766555444322   37788999887432111 1   11124


Q ss_pred             ceeEEEeccchhh--hcCCHH-----------HHHHHHHHHHhccCCCcEEEEEe
Q 021467          105 QADLVCCFQHLQM--CFETEE-----------RARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 ~fD~V~~~~~lh~--~~~~~~-----------~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ..|.++...+...  .+...+           ....+++.+...++.+|.++.+.
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s  135 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS  135 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence            5787766543210  001111           11233555666677788887664

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=80.66  E-value=21  Score=29.90  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=22.2

Q ss_pred             EEEEECCCC-CccHHHH-HHcCCCeEEEEeCCh
Q 021467           34 TVCDLYCGA-GVDVDKW-ETALIANYIGIDVAT   64 (312)
Q Consensus        34 ~VLDlGCG~-G~~l~~~-~~~~~~~v~giDis~   64 (312)
                      +|+=+|||. |..+.+. ...+..+++-+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            478899984 5544444 455788899999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=80.64  E-value=16  Score=33.96  Aligned_cols=99  Identities=10%  Similarity=0.014  Sum_probs=59.0

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      ..++.+||=.|++  -|..+..+++....++++++.+++-.+.+++.+...      ..+..+ ...++...+.. ..+.
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g  228 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD------EAFNYK-EEPDLDAALKRYFPEG  228 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC------EEEECC-CcccHHHHHHHHCCCC
Confidence            4578899999983  455666677665568999999988776665333211      112111 01122221111 1246


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-...           ...+....++|++||+++..
T Consensus       229 vD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        229 IDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             cEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence            898875432           12456777899999999865

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.17  E-value=13  Score=34.51  Aligned_cols=94  Identities=11%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeC---ChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDi---s~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .++.+||=+|||. |..+..+++....++++++.   ++.-++.+++    .+    +..+  |..+.+... .. ..+.
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~G----a~~v--~~~~~~~~~-~~-~~~~  238 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LG----ATYV--NSSKTPVAE-VK-LVGE  238 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cC----CEEe--cCCccchhh-hh-hcCC
Confidence            4678999999864 33444555554448999987   5665555543    22    2222  222222111 11 1256


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-...-          ...+....+.|++||.++..
T Consensus       239 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         239 FDLIIEATGV----------PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CCEEEECcCC----------HHHHHHHHHHccCCcEEEEE
Confidence            8988755421          12466777899999998765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=80.12  E-value=5.3  Score=36.66  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=56.5

Q ss_pred             CCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+||-.|||. |..+..+++... ..+++++.++...+.+++. ..      -.++  |.....+.. +....+.+|+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~------~~vi--~~~~~~~~~-~~~~~~~vd~  234 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA------DETV--NLARDPLAA-YAADKGDFDV  234 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------CEEE--cCCchhhhh-hhccCCCccE
Confidence            678999998874 445555555544 3799999998887755442 11      0111  111111111 1112245999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+.....          ...++.+.+.|+++|+++...
T Consensus       235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         235 VFEASGA----------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence            8754321          234677788999999998653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		3e-17
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		4e-16

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 23/220 (10%)
Query: 33  VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN------FIAEFF 86
           +TV DL CG G D+ KW+   I   +  D+A   + + +  +E+ +        F AEF 
Sbjct: 36  ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFI 95
Query: 87  EADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146
            AD   E    + ++     D+  C       FE+ E+A  +L+N    L PGGYF+G T
Sbjct: 96  TADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT 155
Query: 147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKF 206
           P+S  +     + +EA    S             +E Y + F+ + + +PLFG KY    
Sbjct: 156 PNSFELI----RRLEASETES-----------FGNEIYTVKFQKKGD-YPLFGCKYDFNL 199
Query: 207 ANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
              +    + LV+FP L  +A++  ++ V  +   EFY++
Sbjct: 200 EGVVDV-PEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEE 238

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 35/276 (12%)
Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 52  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 111
Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +        + D++         F T E      +N++  L+P
Sbjct: 112 RRFKVFFRAQDSYGRHMDL-----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRP 166
Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++                    + ++ Y I  E + E  P+ 
Sbjct: 167 GGYFIMTVPSRDVILERYKQGR------------------MSNDFYKIELE-KMEDVPME 207
Query: 199 G-KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMS 257
             ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D           
Sbjct: 208 SVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDE--------GR 259
Query: 258 AGPNLIDPRGR--LLPRSYDVLGLYSTFIFQKPDPD 291
             P L    G   L     +V+G+Y   +F+K  P+
Sbjct: 260 RNPELSKKMGLGCLTREESEVVGIYEVVVFRKLVPE 295

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	1e-61
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	2e-49
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	3e-45
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	6e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	7e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-08
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	6e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-07
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-06
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	3e-06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	8e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	9e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-05
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-05
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	4e-05
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	6e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	7e-05
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	7e-05
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	8e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	9e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-04
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	6e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	6e-04
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	8e-04
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	9e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  196 bits (500), Expect = 1e-61
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 8   RSELTHHR-LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           RS+  + R    F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   
Sbjct: 40  RSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVS 99

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I +AR    N ++ F   F   D    +      +   + D++         F T E   
Sbjct: 100 INDARVRARNMKRRFKVFFRAQDSYGRHM-----DLGKEFDVISSQFSFHYAFSTSESLD 154

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
              +N++  L+PGGYF+   P    I  +Y++                    + ++ Y I
Sbjct: 155 IAQRNIARHLRPGGYFIMTVPSRDVILERYKQ------------------GRMSNDFYKI 196

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
             E  E+      ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D
Sbjct: 197 ELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYED 256

Query: 247 NRALFAGMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPD 291
                  +    G       G L     +V+G+Y   +F+K  P+
Sbjct: 257 EGRRNPELSKKMG------LGCLTREESEVVGIYEVVVFRKLVPE 295

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  165 bits (419), Expect = 2e-49
 Identities = 49/302 (16%), Positives = 99/302 (32%), Gaps = 40/302 (13%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGI 60
           R+      L  + KT LI +Y             V  +  G G D++K+    IA  +  
Sbjct: 18  RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVAT 77

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEA-----DPCAENFETQMQEK--ANQADLVCCFQ 113
           D     I    + +         ++++         ++ F + ++E     + +++    
Sbjct: 78  DPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQF 137

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN 173
            +   F     A  ++ N+S L   GG  L  T D   +     K     H         
Sbjct: 138 AIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHK-------- 188

Query: 174 LVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLE 233
              N   SE+Y+   ++ +++       Y     +    E   ++    ++R+  E G  
Sbjct: 189 ---NLPSSENYMSVEKIADDRI----VVYNPSTMSTPMTE--YIIKKNDIVRVFNEYGFV 239

Query: 234 YVEIQNLNEFYDDNRALFAGM-----LMSAGPNLIDPRGRLLPRSYD---VLGLYSTFIF 285
            V+  +     + ++    G        S        RG +     D   +L  Y  ++F
Sbjct: 240 LVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLSYYVVYVF 299

Query: 286 QK 287
            K
Sbjct: 300 SK 301

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  155 bits (391), Expect = 3e-45
 Identities = 70/314 (22%), Positives = 120/314 (38%), Gaps = 62/314 (19%)

Query: 19  FAKTALIKIYSHPYV-------TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           + K+ LI  +            TV DL CG G D+ KW+   I   +  D+A   + + +
Sbjct: 15  WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQ 74

Query: 72  DTWENQRKNFI------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
             +E+ +          AEF  AD   E    + ++     D+  C       FE+ E+A
Sbjct: 75  QRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQA 134

Query: 126 RRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185
             +L+N    L PGGYF+G TP+S  +  + + +                     +E Y 
Sbjct: 135 DMMLRNACERLSPGGYFIGTTPNSFELIRRLEASET---------------ESFGNEIYT 179

Query: 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD 245
           + F+ ++  +PLFG KY       +    + LV+FP L  +A++  ++ V  +   EFY+
Sbjct: 180 VKFQ-KKGDYPLFGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTFLEFYE 237

Query: 246 D------NRALFAGM--------------------------LMSAGPNLIDPRGRLLPRS 273
           +      N+ L   M                                 +  P G L    
Sbjct: 238 EKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSE 297

Query: 274 YDVLGLYSTFIFQK 287
           ++   +Y  F F+K
Sbjct: 298 WEATSIYLVFAFEK 311

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 41/231 (17%)

Query: 18  EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDT 73
           +F +    +        V DL CG G+      T  +A      +G+D+    +  AR  
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIP-----TLELAERGYEVVGLDLHEEMLRVARR- 81

Query: 74  WENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS 133
            + + +N   EF + D        +     N+ D V  F    + +  EE  R+L   V+
Sbjct: 82  -KAKERNLKIEFLQGD--VLEIAFK-----NEFDAVTMFFST-IMYFDEEDLRKLFSKVA 132

Query: 134 SLLKPGGYFL-------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
             LKPGG F+           D   +W + +   +        ++P +          ++
Sbjct: 133 EALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ---KLRFKRLV 189

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  +   F    +L              + P  +RL  E   E V+I
Sbjct: 190 QILRPNGEVKAFLVDDELNI------------YTPREVRLLAEKYFEKVKI 228

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.4 bits (131), Expect = 7e-09
 Identities = 33/243 (13%), Positives = 72/243 (29%), Gaps = 48/243 (19%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQR 78
            L++  +    ++ D+ CG G                +  G++++   +  AR      +
Sbjct: 32  DLVRSRTPEASSLLDVACGTGTH-----LEHFTKEFGDTAGLELSEDMLTHAR------K 80

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           +   A   + D    +F         +   V          +T E     + + +  L+P
Sbjct: 81  RLPDATLHQGD--MRDFRLG-----RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEP 133

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV---ITFEVEEEKF 195
           GG  +         +A    + +       ++    V + +R  +     + F V +   
Sbjct: 134 GGVVVVEPWWFPETFADGWVSADVVRRDGRTVA--RVSHSVREGNATRMEVHFTVADP-- 189

Query: 196 PLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD--NRALF 251
              GK  +        ++   +  F           AGL    +            R LF
Sbjct: 190 ---GKGVR------HFSDVHLITLFHQAEYEAAFTAAGLRVEYL------EGGPSGRGLF 234

Query: 252 AGM 254
            G+
Sbjct: 235 VGV 237

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 36/247 (14%), Positives = 66/247 (26%), Gaps = 56/247 (22%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA---NYIGIDVATSGIGEARDTWENQRK 79
           AL++ +S    ++ D+ CG G+ +      L        G++++   +  AR      R+
Sbjct: 42  ALVRRHSPKAASLLDVACGTGMHL----RHLADSFGTVEGLELSADMLAIAR------RR 91

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N  A     D    +F         +   V C          +      L+  ++ + P 
Sbjct: 92  NPDAVLHHGD--MRDFSLG-----RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144

Query: 140 GYFL--------GITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           G  +          TP                    SS +              + + V 
Sbjct: 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEAT-------RIEVHYLVA 197

Query: 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD--N 247
                   +            E+  +  F      R    AGL    +            
Sbjct: 198 GP-----DRGIT------HHEESHRITLFTREQYERAFTAAGLSVEFM------PGGPSG 240

Query: 248 RALFAGM 254
           R LF G+
Sbjct: 241 RGLFTGL 247

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 32/231 (13%), Positives = 66/231 (28%), Gaps = 43/231 (18%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK 79
                +  +    DL CG G       T  +     N   +D++   + EA +  + + +
Sbjct: 30  KCVENNLVFDDYLDLACGTGNL-----TENLCPKFKNTWAVDLSQEMLSEAEN--KFRSQ 82

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
                    D    N          + DL+ C           +  ++  + VS+ LK G
Sbjct: 83  GLKPRLACQD--ISNLNIN-----RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSM--KPNLVPNCIRSESYVITFEVEEEKFPL 197
           G F+        +      N   Y +       +     + +      I+F V +     
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMY---ISFFVRD----- 187

Query: 198 FGKKYQLKFANDISAETQCLVHFPS--LIRLAREAGLEYVEIQNLNEFYDD 246
            G+ Y+         E      +    + +  +   L  ++        D 
Sbjct: 188 -GEFYK------RFDEEHEERAYKEEDIEKYLKHGQLNILDK------VDC 225

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 32/234 (13%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDVATSGI 67
           EL     Y      +++    P   + D+ CG G         L  +Y   G+D++   +
Sbjct: 13  ELMQDVPYPEWVAWVLEQV-EPGKRIADIGCGTGTAT----LLLADHYEVTGVDLSEEML 67

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
             A++  +    N   +F+  D      E          D +          +TE   ++
Sbjct: 68  EIAQE--KAMETNRHVDFWVQD--MRELELP-----EPVDAITILCDSLNYLQTEADVKQ 118

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSM----KPNLVPNCIRSES 183
              + + LL  GG  L        +   +     A H   SS      P   P  +  E 
Sbjct: 119 TFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHEL 178

Query: 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
                  E+ ++    + +  +                  I   REAG     +
Sbjct: 179 TFFIEG-EDGRYDRVDETHHQR-----------TYPPEQYITWLREAGFRVCAV 220

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 26/229 (11%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
           H    V D+ CG GVD     + ++         +D +   +  A     N+RK    + 
Sbjct: 56  HGCHRVLDVACGTGVD-----SIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDK 110

Query: 86  FEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARRLLQNVSSLLKPGGY 141
           +  +        +     +  D V C    F HL      +   R  L+N++S+++PGG 
Sbjct: 111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 170

Query: 142 FL--GITPDS--STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPL 197
            +      D   ST  A   KN+    + +  +  +++    ++    + + V+      
Sbjct: 171 LVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGR 230

Query: 198 FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246
            G     KF       +       S   L +EA     +         D
Sbjct: 231 DGAPGFSKF-----RLSYYPHCLASFTELVQEAFGGRCQH----SVLGD 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 40/328 (12%), Positives = 87/328 (26%), Gaps = 98/328 (29%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63
             + R +  + +L    + AL+++     V +  +  G+G    K  T +       DV 
Sbjct: 129 YNVSRLQP-YLKL----RQALLELRPAKNVLIDGVL-GSG----K--TWVAL-----DV- 170

Query: 64  TSGIGEARDTWENQRKNF------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
                         + +F      +      +   E     +Q+   Q D     +    
Sbjct: 171 ------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHS 220

Query: 118 C------FETEERARRLLQN---VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHN--- 165
                     +   RRLL++    + LL        +  +   +     K   A++    
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL--------VLLN---VQNA--KAWNAFNLSCK 267

Query: 166 -----RSSSMKPNLVPNC---IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCL 217
                R   +   L       I  + + +T    +E   L  K    +   D+  E    
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCR-PQDLPREV-LT 324

Query: 218 VHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGRLLPRSYDVL 277
            + P  + +         +     + +                   D    ++  S +VL
Sbjct: 325 TN-PRRLSI---IAESIRDGLATWDNWKHVN--------------CDKLTTIIESSLNVL 366

Query: 278 ------GLYSTF-IFQKPDPDVAPPLAT 298
                  ++    +F         P   
Sbjct: 367 EPAEYRKMFDRLSVFPP---SAHIPTIL 391

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 25/146 (17%)

Query: 4   LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA------NY 57
               +        Y    +  I         + DL  G G       +A +        +
Sbjct: 19  EQRRKFIPCFDDFYG--VSVSIASVDTENPDILDLGAGTG-----LLSAFLMEKYPEATF 71

Query: 58  IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQM 117
             +D++   +  A++ +    K    ++ EAD    +FE        + D+V     +  
Sbjct: 72  TLVDMSEKMLEIAKNRFRGNLK---VKYIEADYSKYDFE-------EKYDMVVSALSIH- 120

Query: 118 CFETEERARRLLQNVSSLLKPGGYFL 143
               +E  + L +   S+LK  G F+
Sbjct: 121 -HLEDEDKKELYKRSYSILKESGIFI 145

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 12/141 (8%)

Query: 5   PIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY--IGIDV 62
            +P    T  R   F +     +   P   V  + CG   ++   + +       +GID 
Sbjct: 94  RLPAVLATRERHGHFRRALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDY 151

Query: 63  ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE 122
               +  A                  D  A   +T         DL+          + +
Sbjct: 152 DPEALDGATRLAAGHALAGQITLHRQD--AWKLDT-----REGYDLLTSNGLNIYEPD-D 203

Query: 123 ERARRLLQNVSSLLKPGGYFL 143
            R   L +     LKPGG  +
Sbjct: 204 ARVTELYRRFWQALKPGGALV 224

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 29/246 (11%), Positives = 57/246 (23%), Gaps = 53/246 (21%)

Query: 10  ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCG----------AGVDVDKWETALIANYIG 59
           +L                       V +L  G           G +V             
Sbjct: 61  DLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEV-----------TA 109

Query: 60  IDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQ 113
           ++++TS +   R                 + D     F         +   V        
Sbjct: 110 LELSTSVLAAFRKRLAEAPADVRDRCTLVQGD--MSAFALD-----KRFGTVVISSGSIN 162

Query: 114 HLQMCFETEERARRLLQNVSSLLKPGGYFL--GITPDSSTIWAKYQKNVEAYHNRSSSMK 171
            L      E   R L  +V   L+PGG FL      +++      +K      +    + 
Sbjct: 163 EL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVL 217

Query: 172 PNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAG 231
                     +   I    E     +            +    + L+    ++R    +G
Sbjct: 218 HVRHLPAEEIQEITIHPADETTDPFV------------VCTHRRRLLAPDQVVRELVRSG 265

Query: 232 LEYVEI 237
            + +  
Sbjct: 266 FDVIAQ 271

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + D  CG G          ++      +G D+    I  A+  +        A +   D
Sbjct: 49  KILDAGCGQGRI-----GGYLSKQGHDVLGTDLDPILIDYAKQDFPE------ARWVVGD 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              +             DL+    ++      + R    L N+   L   G  +
Sbjct: 98  LSVDQIS------ETDFDLIVSAGNVMGFLAEDGR-EPALANIHRALGADGRAV 144

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.0 bits (106), Expect = 9e-06
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQR 78
              ++  +P + + D  CG G       T  ++ +    IG+DV+ S +  A        
Sbjct: 48  PRFELLFNPELPLIDFACGNGTQ-----TKFLSQFFPRVIGLDVSKSALEIAAKENTAAN 102

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCC--FQHLQMCFETEERARRLLQNVSSLL 136
                 +   D        Q+  +   A++     F H+       E+   L Q++  LL
Sbjct: 103 ----ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHI-----PVEKRELLGQSLRILL 153

Query: 137 KPGGYFL 143
              G   
Sbjct: 154 GKQGAMY 160

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 20/149 (13%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDK-WETALIANYIGIDVATS 65
            +  L   R        L          V DL CG G  +    +        G+DV+ S
Sbjct: 9   KKLNLNQQR-LGTVVAVLKS---VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS 64

Query: 66  GIGEAR-----DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE 120
            +  A+     D     ++  I   F++            ++ +  D     + ++    
Sbjct: 65  VLERAKDRLKIDRLPEMQRKRI-SLFQSS------LVYRDKRFSGYDAATVIEVIEHL-- 115

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDS 149
            E R +   + +    +P    +  TP+ 
Sbjct: 116 DENRLQAFEKVLFEFTRPQTVIV-STPNK 143

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 6/116 (5%)

Query: 51  TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADL 108
             +  N   ++ +   I + ++           +F      +  ++++M E  +  + D 
Sbjct: 79  PGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDF 138

Query: 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYH 164
           +   Q         +     L+   SLL      L I    S+ W K  K   +  
Sbjct: 139 IHMIQ----MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 31  PYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVATSGIGEARDTWENQRK-NFIAEF 85
                 ++ C AG       T  +A        IDV    IG A    +     ++ A  
Sbjct: 51  AVSNGLEIGCAAGAF-----TEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATD 105

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
                 AE F           DL+   + L    E   + R  + N+  +L PGG+ +
Sbjct: 106 ILQFSTAELF-----------DLIVVAEVLY-YLEDMTQMRTAIDNMVKMLAPGGHLV 151

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 23/184 (12%)

Query: 24  LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRK 79
           L+  Y      V DL CG G       + L+ +Y    +G+D++   I +AR+  +++  
Sbjct: 31  LLMKYMKKRGKVLDLACGVGGF-----SFLLEDYGFEVVGVDISEDMIRKAREYAKSRES 85

Query: 80  NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG 139
           N   EF   D  A         +    D V     +           ++ + V  +LKP 
Sbjct: 86  N--VEFIVGD--ARKLS----FEDKTFDYVIFIDSI--VHFEPLELNQVFKEVRRVLKPS 135

Query: 140 GYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFG 199
           G F+    D   +  + ++++        S     V       + VI F+ E++ F +  
Sbjct: 136 GKFIMYFTDLRELLPRLKESLVVGQKYWIS----KVIPDQEERTVVIEFKSEQDSFRVRF 191

Query: 200 KKYQ 203
             + 
Sbjct: 192 NVWG 195

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Length = 289

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 14/69 (20%), Positives = 25/69 (36%)

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
           E Q +  +      D                AD +     L+         +R L ++++
Sbjct: 144 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITT 203

Query: 135 LLKPGGYFL 143
           LL+PGG+ L
Sbjct: 204 LLRPGGHLL 212

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 17  YEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW--ETALIANYIGIDVATSGIGEARDTW 74
            E+A   + +       T+ D  CG+G  +D        +   IG+D++  G+  A    
Sbjct: 710 VEYALKHIRE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766

Query: 75  ENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134
             +          A     +   +   + +  D+  C + ++     E++A    + V S
Sbjct: 767 HVKLNKEACNVKSATLYDGSIL-EFDSRLHDVDIGTCLEVIEHM--EEDQACEFGEKVLS 823

Query: 135 LLKPGGYFLGITP 147
           L  P    +  TP
Sbjct: 824 LFHPKLLIVS-TP 835

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 10/144 (6%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATS 65
               L   R       AL +        V DL CG G  +    + +      G+DV+  
Sbjct: 9   KPISLNQQR-MNGVVAALKQ---SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYR 64

Query: 66  GIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERA 125
            +  A++  +  R       +E     +   T   ++ +  D     + ++       R 
Sbjct: 65  SLEIAQERLD--RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHL--DLSRL 120

Query: 126 RRLLQNVSSLLKPGGYFLGITPDS 149
               + +    +P    +  TP+ 
Sbjct: 121 GAFERVLFEFAQPKIVIVT-TPNI 143

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 25/157 (15%), Positives = 41/157 (26%), Gaps = 13/157 (8%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY-------IGIDVATSG 66
                 +    IK++     TV D  CG G D     TA +A+         G D+    
Sbjct: 6   KNSLGQSHD-YIKMFVKEGDTVVDATCGNGND-----TAFLASLVGENGRVFGFDIQDKA 59

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           I        +          +      +       KA   +L              E   
Sbjct: 60  IANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
           + L     LL  GG    +         + ++ V  +
Sbjct: 120 QALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 42.3 bits (99), Expect = 9e-05
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 10/124 (8%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
            L+   S P        CG G DV     +     +G+D++ S + +A +T+ +  K   
Sbjct: 58  HLVDTSSLPLGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEY 116

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
             F + D                 DL+    ++  C    E      +++  LLKP G  
Sbjct: 117 FSFVKEDVFTW-------RPTELFDLIFD--YVFFCAIEPEMRPAWAKSMYELLKPDGEL 167

Query: 143 LGIT 146
           + + 
Sbjct: 168 ITLM 171

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 30/166 (18%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIA----NYIGIDVA 63
             ++ +  ++   +  L  + +  +  V +   G G       T  +        GI+ +
Sbjct: 22  GEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGN-----LTNKLLLAGRTVYGIEPS 76

Query: 64  TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC---FQHLQMCFE 120
                 A+   E   K F     E D    +FE          D +     F HL     
Sbjct: 77  REMRMIAK---EKLPKEF--SITEGD--FLSFEV-----PTSIDTIVSTYAFHHL----- 119

Query: 121 TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNR 166
           T++     +   S LL  GG  +      +     Y K VEA   R
Sbjct: 120 TDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYDKTVEAAKQR 164

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 17/134 (12%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGE 69
            R    +    +         V D   G G D     TA +A         DV    +G+
Sbjct: 6   KRPIHMSHD-FLAEVLDDESIVVDATMGNGND-----TAFLAGLSKKVYAFDVQEQALGK 59

Query: 70  ARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQA--DLVCCFQHLQMCFETEERAR 126
                 +   +N   E        EN +  ++E    A  +L       +          
Sbjct: 60  TSQRLSDLGIENT--ELILD--GHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTL 115

Query: 127 RLLQNVSSLLKPGG 140
             ++ +   L+ GG
Sbjct: 116 EAIEKILDRLEVGG 129

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 30/129 (23%), Positives = 41/129 (31%), Gaps = 26/129 (20%)

Query: 30  HPYVTVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEF 85
            P   + DL CG G       T  IA      +G D A + I +AR  + +        F
Sbjct: 56  QPGEFILDLGCGTG-----QLTEKIAQSGAEVLGTDNAATMIEKARQNYPH------LHF 104

Query: 86  FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145
             AD  A NF           D V     L       +     + ++   LK GG F+  
Sbjct: 105 DVAD--ARNFRV-----DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAE 153

Query: 146 TPDSSTIWA 154
                 I  
Sbjct: 154 FGGKGNIKY 162

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 23/135 (17%)

Query: 14  HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT 73
               E      +     P   V +  CG G D  ++     A +   D +   +  AR  
Sbjct: 31  GPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARF-GPQAARWAAYDFSPELLKLARAN 89

Query: 74  WENQRKNFIAEFFEADPCAEN-FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +      A+ +E +   E               L+   +              ++  +
Sbjct: 90  APH------ADVYEWNGKGELPAGL-----GAPFGLIVSRRG----------PTSVILRL 128

Query: 133 SSLLKPGGYFLGITP 147
             L  P  +FL + P
Sbjct: 129 PELAAPDAHFLYVGP 143

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 29/154 (18%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
            HR    ++   +K    P     ++  G G          +   IG++ +      AR 
Sbjct: 30  VHRFAYLSELQAVKCLL-PEGRGVEIGVGTGRF-----AVPLKIKIGVEPSERMAEIAR- 82

Query: 73  TWENQRKNFIAEFFEADPCAEN--FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQ 130
                ++       +    AEN   +          D               +   R L+
Sbjct: 83  -----KRG--VFVLKGT--AENLPLK------DESFDFALMV----TTICFVDDPERALK 123

Query: 131 NVSSLLKPGGYFLGITPDSSTIWAK-YQKNVEAY 163
               +LK GGY +    D  +   + Y+KN E  
Sbjct: 124 EAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 25/114 (21%)

Query: 34  TVCDLYCGAGVDVDKWETALIANY----IGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89
            + +L CGAG          +          D +     EA        +      F   
Sbjct: 46  KILELGCGAGYQ-----AEAMLAAGFDVDATDGSPELAAEAS---RRLGRPVRTMLFHQL 97

Query: 90  PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
              + +           D V     L       +    +L+ +   LKPGG F 
Sbjct: 98  DAIDAY-----------DAVWAHACLLHV--PRDELADVLKLIWRALKPGGLFY 138

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 13/128 (10%)

Query: 16  LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75
           LY F K        +   TV D   G  +              GI+++   + +A +   
Sbjct: 11  LYRFLKYCNES---NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAEN--F 65

Query: 76  NQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135
           ++  NF     + D     F+            V  +  +      +   +  +  +  +
Sbjct: 66  SRENNFKLNISKGDIRKLPFK------DESMSFVYSYGTI--FHMRKNDVKEAIDEIKRV 117

Query: 136 LKPGGYFL 143
           LKPGG   
Sbjct: 118 LKPGGLAC 125

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + DL CG G           +  +G+D++   +  AR    +        +  AD    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKL 101

Query: 94  NFETQMQEKANQADLVCC---FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143
           +         +  DL        ++       E   RL + V   L PGG+F+
Sbjct: 102 HLP------QDSFDLAYSSLALHYV-------EDVARLFRTVHQALSPGGHFV 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	100.0
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	100.0
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.83
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.78
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.77
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.77
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.76
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.76
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.75
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.75
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.75
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.75
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.75
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.74
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.74
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.73
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.73
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.73
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.73
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.73
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.73
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.72
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.72
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.72
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.72
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.72
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.72
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.71
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.71
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.71
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.7
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.7
3ocj_A	305	Putative exported protein; structural genomics, PS	99.7
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.7
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.69
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.69
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.68
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.67
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.67
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.67
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.67
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.67
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.67
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.67
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.66
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.66
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.66
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.66
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.66
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.65
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.65
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.65
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.64
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.64
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.64
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.64
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.63
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.63
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.63
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.63
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.62
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.62
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.62
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.61
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.61
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.61
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.61
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.6
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.6
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.6
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.6
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.59
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.59
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.59
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.59
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.59
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.58
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.57
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.57
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.56
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.56
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.56
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.56
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.55
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.55
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.55
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.55
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.54
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.54
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.53
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.53
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.53
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.53
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.52
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.52
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.52
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.51
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.51
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.51
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.51
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.51
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.51
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.5
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.47
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.47
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.47
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.47
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.47
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.47
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.46
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.46
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.46
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.46
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.45
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.45
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.45
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.44
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.44
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.44
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.44
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.44
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.44
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.44
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.43
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.43
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.43
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.42
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.41
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.41
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.41
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.41
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.41
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.41
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.4
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.4
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.4
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.4
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.39
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.39
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.39
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.39
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.39
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.38
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.38
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.38
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.38
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.37
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.37
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.37
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.37
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.37
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.37
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.37
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.36
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.36
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.35
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.35
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.35
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.35
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.35
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.34
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.34
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.34
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.34
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.33
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.33
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.32
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.32
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.32
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.31
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.31
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.31
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.3
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.3
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.29
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.29
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.29
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.29
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.29
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.28
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.27
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.27
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.26
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.26
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.26
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.26
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.25
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.25
2o07_A	304	Spermidine synthase; structural genomics, structur	99.25
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.25
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.24
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.24
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.24
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.24
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.23
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.23
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.23
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.22
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.22
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.22
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.22
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.21
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.18
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.18
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.18
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.18
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.17
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.16
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.14
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.12
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.12
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.12
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.12
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.1
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.1
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.07
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.05
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.05
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.03
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.03
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.01
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.95
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.95
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.94
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.93
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.91
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.91
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.88
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.86
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.84
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.82
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.79
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.75
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.73
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.73
3khk_A	544	Type I restriction-modification system methylation	98.71
3lkd_A	542	Type I restriction-modification system methyltrans	98.67
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.67
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.64
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.63
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.61
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.6
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.58
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.57
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.55
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.5
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.39
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.38
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.37
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.35
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.3
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.27
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.22
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.13
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.11
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.05
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.99
3ufb_A	530	Type I restriction-modification system methyltran	97.95
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.94
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.9
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.88
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.85
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.77
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.76
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.64
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.48
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.37
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.34
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.28
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.86
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.6
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.98
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.9
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.88
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.57
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.48
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.21
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.21
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	95.14
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.08
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.04
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.97
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.76
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.73
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.44
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.01
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.59
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.43
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.91
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	92.82
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.79
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.69
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.66
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.62
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.57
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.52
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	92.47
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.43
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	92.41
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.38
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	92.34
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.28
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	92.13
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.08
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.01
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.85
3me5_A	482	Cytosine-specific methyltransferase; structural ge	91.7
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	91.57
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.28
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.27
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.18
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.09
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	90.92
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.73
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	90.53
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	90.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.38
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	90.31
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.28
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	89.99
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.88
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	89.76
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	89.75
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	89.72
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.64
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.53
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	89.48
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	89.46
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	89.36
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	89.06
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	89.01
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	88.92
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	88.84
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	88.76
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	88.74
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.67
4eye_A	342	Probable oxidoreductase; structural genomics, niai	88.63
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	88.52
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	87.93
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	87.5
1id1_A	153	Putative potassium channel protein; RCK domain, E.	87.38
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	86.88
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	86.77
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	86.7
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	86.63
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	86.54
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.53
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	86.35
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	84.88
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	84.32
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	84.2
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.71
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	83.71
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	83.7
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.14
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.1
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	82.72
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	82.69
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	82.52
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	82.48
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	82.41
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	82.39
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	82.16
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	80.82
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	80.46
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	80.06

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=100.00  E-value=1.7e-40  Score=303.78  Aligned_cols=262  Identities=17%  Similarity=0.249  Sum_probs=193.2

Q ss_pred             CCCCCCCCCcchHHhHHHHHHHHHHHHhcCC-------CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHH
Q 021467            1 MSVLPIPRSELTHHRLYEFAKTALIKIYSHP-------YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT   73 (312)
Q Consensus         1 ~~~~~~~R~~~~~~~~~n~vk~~li~~~~~~-------~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r   73 (312)
                      +++|..+|.++|++.++||+++.+|+.+++.       +.+|||||||+|+++.+|+..+..+|+|+|+|+.||+.|+++
T Consensus        11 ~~~f~~~r~~~~~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~   90 (302)
T 2vdw_A           11 VSYFTNKRTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNER   90 (302)
T ss_dssp             CCCBCSSCCCHHHHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHH
T ss_pred             cchhccccccchHHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHH
Confidence            3689999999999999999999999998763       689999999999999998887777999999999999999999


Q ss_pred             HHhcCCC-----ceEEEEEcCCCCCchhhhhh--hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           74 WENQRKN-----FIAEFFEADPCAENFETQMQ--EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        74 ~~~~~~~-----~~~~f~~~D~~~~~~~~~~~--~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +...+..     +.++|.+.|+....+...+.  .++++||+|+|++++||++.+++ ...++++++++|||||+|++++
T Consensus        91 ~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~-~~~~l~~~~r~LkpGG~~i~~~  169 (302)
T 2vdw_A           91 YNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRH-YATVMNNLSELTASGGKVLITT  169 (302)
T ss_dssp             HHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTT-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHH-HHHHHHHHHHHcCCCCEEEEEe
Confidence            8765421     23678899986654322221  13579999999999999877653 5799999999999999999999


Q ss_pred             cChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecccCCCCCcceeee--EEeEcccccCCCccccchHHHH
Q 021467          147 PDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKY--QLKFANDISAETQCLVHFPSLI  224 (312)
Q Consensus       147 p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y--~f~l~~~~~~~~e~lv~~~~l~  224 (312)
                      |+.+.+...+.+       .+.    ..+++.+..+.|. .+.       .++..|  .|...+...++++|+|+++.|+
T Consensus       170 ~~~~~~~~~~~~-------~~~----~i~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~e~~v~~~el~  230 (302)
T 2vdw_A          170 MDGDKLSKLTDK-------KTF----IIHKNLPSSENYM-SVE-------KIADDRIVVYNPSTMSTPMTEYIIKKNDIV  230 (302)
T ss_dssp             ECHHHHTTCCSC-------EEE----ECCSSSCTTTSEE-EEC-------EEETTEEEEBCTTTBSSCEEEECCCHHHHH
T ss_pred             CCHHHHHHHHhc-------CCc----cccccccccccee-eec-------cccccccceeeccccCCCceeeeeEHHHHH
Confidence            998776532210       000    0122221111111 000       000111  1111222456789999999999


Q ss_pred             HHHHHcCcEEEEecCchHHHHhhHHHHHHH--------------HHhcCCCCCCCCCCCChhHHHHhhhheeeEEeec
Q 021467          225 RLAREAGLEYVEIQNLNEFYDDNRALFAGM--------------LMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (312)
Q Consensus       225 ~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~e~e~~~ly~~f~F~K~  288 (312)
                      ++++++||++++..+|++||++++..+..|              +.+++      .+.++++||||++||++|||+|.
T Consensus       231 ~l~~~~Gl~lv~~~~f~~~~~~~~~~~~~~~~le~~~~~~~~~~l~~~~------~~~~~~~~~e~~~lY~~f~F~K~  302 (302)
T 2vdw_A          231 RVFNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGA------IKCEGLDVEDLLSYYVVYVFSKR  302 (302)
T ss_dssp             HHHHHTTEEEEEEEEHHHHHHHHHHHHHTGGGGCCCHHHHHHHHHHHHH------HHCCSCSHHHHHTTEEEEEEEEC
T ss_pred             HHHHHCCCEEEEecChHHHHHHHHHHHHHhhhhhccCcccccccccccc------cccCCHhHHHHHhheEEEEEEEC
Confidence            999999999999999999999987643332              22221      13689999999999999999995

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=100.00  E-value=4.6e-37  Score=281.89  Aligned_cols=259  Identities=27%  Similarity=0.478  Sum_probs=200.6

Q ss_pred             HHhHHHHHHHHHHHHhcC-------CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC------C
Q 021467           13 HHRLYEFAKTALIKIYSH-------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR------K   79 (312)
Q Consensus        13 ~~~~~n~vk~~li~~~~~-------~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~------~   79 (312)
                      .+.++||+++.++..++.       ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|++++...+      .
T Consensus         9 lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~   88 (313)
T 3bgv_A            9 LRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY   88 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-C
T ss_pred             hhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccc
Confidence            456889999998887654       678999999999999999887767799999999999999999986532      2


Q ss_pred             CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh
Q 021467           80 NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN  159 (312)
Q Consensus        80 ~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~  159 (312)
                      ..++.++++|+...++...+..++++||+|+|.+++|+++.+.++...+++++.++|||||.+++++|+.+.+.+.+.+.
T Consensus        89 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~  168 (313)
T 3bgv_A           89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEAS  168 (313)
T ss_dssp             CCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTS
T ss_pred             cceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhh
Confidence            23589999999886532222212458999999999999878899999999999999999999999999998877665421


Q ss_pred             HHhhhcCCCCCCCCCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecC
Q 021467          160 VEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN  239 (312)
Q Consensus       160 ~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~  239 (312)
                            .+     ..+|+    .+|++.|... ...+.+|.+|.|.++.. .++++|+++++.+.++++++||+++...+
T Consensus       169 ------~~-----~~~~~----~~~~~~f~~~-~~~~~~~~~~~f~l~~~-~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          169 ------ET-----ESFGN----EIYTVKFQKK-GDYPLFGCKYDFNLEGV-VDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             ------SS-----SEEEC----SSEEEEESCS-SCCCSSCCEEEEEEC----CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             ------cc-----CccCC----eeEEEEeCCC-CCCCCccceEEEEECCc-ccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                  00     12344    4688888743 34688999999998553 47889999999999999999999999999


Q ss_pred             chHHHHhhHHHH--HHHHHhcCC------------------------------CCCCCCCCCChhHHHHhhhheeeEEee
Q 021467          240 LNEFYDDNRALF--AGMLMSAGP------------------------------NLIDPRGRLLPRSYDVLGLYSTFIFQK  287 (312)
Q Consensus       240 f~~~~~~~~~~~--~~~~~~~~~------------------------------~~~~~~~~l~~~e~e~~~ly~~f~F~K  287 (312)
                      |.+++..+....  ..++.++..                              ...+..|+||++||||+++|++|||+|
T Consensus       232 f~~~g~~~~~~~r~~~l~~~~~~~~~y~~~~~~~~~~~~~~ty~~~~~~~~~~~~~~~~~~~~~~e~e~~~~y~~~~f~k  311 (313)
T 3bgv_A          232 FLEFYEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEWEATSIYLVFAFEK  311 (313)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHC----------------------------------CCSSSSCHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHhccchhhhHHHHhhhcccccCccccccccccchhhhHHHHHHHhhccccCcCCCCCHHHHHHHHhheEEEEEe
Confidence            999998864321  112211100                              001135789999999999999999999


Q ss_pred             c
Q 021467          288 P  288 (312)
Q Consensus       288 ~  288 (312)
                      .
T Consensus       312 ~  312 (313)
T 3bgv_A          312 Q  312 (313)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=100.00  E-value=2.5e-34  Score=260.47  Aligned_cols=249  Identities=27%  Similarity=0.484  Sum_probs=209.5

Q ss_pred             HhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 021467           14 HRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (312)
Q Consensus        14 ~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~   93 (312)
                      ..+++|++..++..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...++.++++|+...
T Consensus        47 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  126 (298)
T 1ri5_A           47 RNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR  126 (298)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc
Confidence            45779999999999999999999999999998888877776699999999999999999998765445689999999876


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCC
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPN  173 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~  173 (312)
                      ++.     .+++||+|+|.+++|+.+.+.++...+++++.++|||||++++++|+...+..++...              
T Consensus       127 ~~~-----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~--------------  187 (298)
T 1ri5_A          127 HMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG--------------  187 (298)
T ss_dssp             CCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT--------------
T ss_pred             ccC-----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccC--------------
Confidence            541     2578999999999999888999999999999999999999999999998887766421              


Q ss_pred             CCCCcccCceEEEEecccCCCCCc-ceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHH
Q 021467          174 LVPNCIRSESYVITFEVEEEKFPL-FGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFA  252 (312)
Q Consensus       174 ~~gn~~~~~~y~i~f~~~~~~~~~-~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~  252 (312)
                      .+++    ..|.+.++... ..|. +|..|.|.+.+.+..+++++++++.+.++++++||+++....+.++|..+...+.
T Consensus       188 ~~~~----~~~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~~~~~~~~~  262 (298)
T 1ri5_A          188 RMSN----DFYKIELEKME-DVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP  262 (298)
T ss_dssp             CCBC----SSEEEECCCCS-SCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTCH
T ss_pred             ccCC----eeEEEEeCccc-cccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHHHHHHHHHHHhh
Confidence            2344    46888776432 3454 8999999998887677788999999999999999999999999999998776666


Q ss_pred             HHHHhcCCCCCCCCCCCChhHHHHhhhheeeEEeecCCCC
Q 021467          253 GMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDV  292 (312)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~e~e~~~ly~~f~F~K~~~~~  292 (312)
                      +++++++      .|.+|.++|+++++|++|+|+|.+++.
T Consensus       263 ~~~~~~~------~~~~s~~~~~~~~~y~~~~~~k~~~~~  296 (298)
T 1ri5_A          263 ELSKKMG------LGCLTREESEVVGIYEVVVFRKLVPES  296 (298)
T ss_dssp             HHHHSSS------CCCCCHHHHHHHTTEEEEEEEEC----
T ss_pred             hHHHhcC------cCccCHHHHHHHhceEEEEEEEcCCcc
Confidence            7777765      478999999999999999999998543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.83  E-value=8.2e-20  Score=163.27  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=98.7

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      ..++..+++++.+|||||||+|..+..+++.   +..+|+|+|+|+.||+.|+++.+..+...+++++++|+.+.++   
T Consensus        61 ~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~---  137 (261)
T 4gek_A           61 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---  137 (261)
T ss_dssp             HHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC---
T ss_pred             HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc---
Confidence            3466778889999999999999888887764   3458999999999999999999877666679999999987654   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                           +.||+|++.+++|+  .+.++...+|++++++|||||+|+++
T Consensus       138 -----~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpGG~lii~  177 (261)
T 4gek_A          138 -----ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS  177 (261)
T ss_dssp             -----CSEEEEEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----cccccceeeeeeee--cCchhHhHHHHHHHHHcCCCcEEEEE
Confidence                 56999999999998  56777889999999999999999987

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.78  E-value=2.1e-18  Score=156.76  Aligned_cols=184  Identities=14%  Similarity=0.097  Sum_probs=128.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...++++.++|+.+.         +++||+
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~fD~  140 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPVDR  140 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCCSE
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------CCCccE
Confidence            45788999999999988888877623699999999999999999998876555699999998542         478999


Q ss_pred             EEeccchhhhcC-----CHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467          109 VCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES  183 (312)
Q Consensus       109 V~~~~~lh~~~~-----~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~  183 (312)
                      |++..++|+...     ..+....+++++.++|||||++++..+...........        +.     .+..      
T Consensus       141 v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------~~-----~~~~------  201 (302)
T 3hem_A          141 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQEL--------GL-----TSPM------  201 (302)
T ss_dssp             EEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHH--------TC-----CCCH------
T ss_pred             EEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhc--------cc-----cccc------
Confidence            999999998432     34677899999999999999999885543221111000        00     0000      


Q ss_pred             EEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467          184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (312)
Q Consensus       184 y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~  255 (312)
                           .  ......|-.+|.|        ...++.+.+.+.++++++||+++....+...|......|...+
T Consensus       202 -----~--~~~~~~~~~~~~~--------p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~tl~~w~~~~  258 (302)
T 3hem_A          202 -----S--LLRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL  258 (302)
T ss_dssp             -----H--HHHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             -----c--ccchHHHHHHhcC--------CCCCCCCHHHHHHHHHhCCcEEEEEEeCchhHHHHHHHHHHHH
Confidence                 0  0000001111211        0124567889999999999999999988888876555554433

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.77  E-value=3.6e-17  Score=145.97  Aligned_cols=178  Identities=17%  Similarity=0.155  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 021467           15 RLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (312)
Q Consensus        15 ~~~n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~   93 (312)
                      .....+...+++.. ..++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+...
T Consensus        44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            33333344455544 34788999999999988888776555699999999999999999988765444589999999886


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH-HHHHHHHhHHhhhcCCCCCCC
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST-IWAKYQKNVEAYHNRSSSMKP  172 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~-l~~~~~~~~~~~~~~~~~~~~  172 (312)
                      ++      ++++||+|++..++|++    .+...+++++.++|||||+++++.+.... ...........++        
T Consensus       124 ~~------~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~--------  185 (273)
T 3bus_A          124 PF------EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFR--------  185 (273)
T ss_dssp             CS------CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHH--------
T ss_pred             CC------CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHH--------
Confidence            65      56899999999998883    23578999999999999999988654310 0000000000000        


Q ss_pred             CCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhh
Q 021467          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN  247 (312)
Q Consensus       173 ~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~  247 (312)
                                      .       .++              ...+.+.+.+.++++++||+++....+...+...
T Consensus       186 ----------------~-------~~~--------------~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~  223 (273)
T 3bus_A          186 ----------------A-------GGG--------------VLSLGGIDEYESDVRQAELVVTSTVDISAQARPS  223 (273)
T ss_dssp             ----------------H-------HHT--------------CCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTH
T ss_pred             ----------------h-------hcC--------------ccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHH
Confidence                            0       000              1135577889999999999999988887666443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.77  E-value=2.1e-18  Score=151.05  Aligned_cols=187  Identities=20%  Similarity=0.273  Sum_probs=134.4

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +..+++++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....    ++.++++|+...++      +++
T Consensus        47 l~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~  115 (242)
T 3l8d_A           47 FEQYVKKEAEVLDVGCGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKERGEGP----DLSFIKGDLSSLPF------ENE  115 (242)
T ss_dssp             HHHHSCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHTTTCBT----TEEEEECBTTBCSS------CTT
T ss_pred             HHHHcCCCCeEEEEcCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhcccC----CceEEEcchhcCCC------CCC
Confidence            34456688999999999998888877764 49999999999999999886332    38999999987665      568


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y  184 (312)
                      +||+|++..++|+.    .+...+++++.++|+|||+++++.++........                 .+..       
T Consensus       116 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-----------------~~~~-------  167 (242)
T 3l8d_A          116 QFEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYACIAILGPTAKPREN-----------------SYPR-------  167 (242)
T ss_dssp             CEEEEEEESCTTSS----SCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGG-----------------GGGG-------
T ss_pred             CccEEEEcChHhhc----cCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhh-----------------hhhh-------
Confidence            99999999999883    3467889999999999999999976542210000                 0000       


Q ss_pred             EEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHHHhcCCCCCC
Q 021467          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLID  264 (312)
Q Consensus       185 ~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  264 (312)
                                  .++.           .......+.+.+.++++++||+++....+   |......  .+          
T Consensus       168 ------------~~~~-----------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~---~~~~~~~--~~----------  209 (242)
T 3l8d_A          168 ------------LYGK-----------DVVCNTMMPWEFEQLVKEQGFKVVDGIGV---YKRGVNE--KM----------  209 (242)
T ss_dssp             ------------GGTC-----------CCSSCCCCHHHHHHHHHHTTEEEEEEEEE---ECTTCCH--HH----------
T ss_pred             ------------hccc-----------cccccCCCHHHHHHHHHHcCCEEEEeecc---cccCccH--HH----------
Confidence                        0010           00113456778999999999999987755   2211100  11          


Q ss_pred             CCCCCChhHHHHhhhheeeEEeecC
Q 021467          265 PRGRLLPRSYDVLGLYSTFIFQKPD  289 (312)
Q Consensus       265 ~~~~l~~~e~e~~~ly~~f~F~K~~  289 (312)
                       .+.+.....++...+..|+++|.+
T Consensus       210 -~~~~~~~l~~~~~~~~~~~~~~~~  233 (242)
T 3l8d_A          210 -LGQLSTDLQQSLTFLWVFMLKRHK  233 (242)
T ss_dssp             -HTTSCHHHHHHTEEEEEEEEEECC
T ss_pred             -HHHHHHhHHHHHhHhhhhhhHHHH
Confidence             134566677888999999999876

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.77  E-value=8.1e-18  Score=146.24  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=97.7

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhhhh
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      +..+++++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....+.    ..++.++++|+...++     
T Consensus        24 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           24 IHNYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-----
T ss_pred             HHHhCCCCCeEEEECCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-----
Confidence            44456788999999999998888877764 4999999999999999998876543    2258999999987665     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                       ++++||+|++..++|+ +.+.+....+++++.++|||||+++++.++.
T Consensus        98 -~~~~~D~v~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (235)
T 3sm3_A           98 -HDSSFDFAVMQAFLTS-VPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ  144 (235)
T ss_dssp             -CTTCEEEEEEESCGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -CCCceeEEEEcchhhc-CCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence             5689999999999998 4567778899999999999999999986654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.76  E-value=4.5e-17  Score=146.59  Aligned_cols=180  Identities=17%  Similarity=0.191  Sum_probs=124.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+..  +      + ++||+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~------~-~~fD~  132 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--F------D-EPVDR  132 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--C------C-CCCSE
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--C------C-CCeeE
Confidence            3578899999999998888877443449999999999999999998876544468999999743  2      2 78999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF  188 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f  188 (312)
                      |++..++|++  ..++...+++++.++|||||.+++..++.........        .         |...       .+
T Consensus       133 v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~--------~---------~~~~-------~~  186 (287)
T 1kpg_A          133 IVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE--------R---------GLPM-------SF  186 (287)
T ss_dssp             EEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT--------T---------TCSC-------HH
T ss_pred             EEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc--------c---------cccc-------cc
Confidence            9999999882  3356788999999999999999998766533221000        0         0000       00


Q ss_pred             cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHH
Q 021467          189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAG  253 (312)
Q Consensus       189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~  253 (312)
                      ...  ....|-.+|.|        ....+.+.+.+.++++++||+++....+...|......|..
T Consensus       187 ~~~--~~~~~~~~~~~--------~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w~~  241 (287)
T 1kpg_A          187 TFA--RFLKFIVTEIF--------PGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSA  241 (287)
T ss_dssp             HHH--HHHHHHHHHTS--------TTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHH
T ss_pred             ccc--chhhhHHheeC--------CCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhHHHHHHHHHH
Confidence            000  00000001111        01135578899999999999999999888777665544443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.76  E-value=1.8e-17  Score=149.09  Aligned_cols=210  Identities=16%  Similarity=0.159  Sum_probs=139.5

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~-~~~~~~~~  102 (312)
                      ++..+..++.+|||||||+|..+..++.. ..+|+|+|+|+.+++.|+++....+...++.++++|+.+.+ +      .
T Consensus        61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~  133 (285)
T 4htf_A           61 VLAEMGPQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------L  133 (285)
T ss_dssp             HHHHTCSSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------C
T ss_pred             HHHhcCCCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------c
Confidence            44445556789999999999888877776 45999999999999999999987655456999999987755 3      4


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh-HHhhhcCCCCCCCCCCCCcccC
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN-VEAYHNRSSSMKPNLVPNCIRS  181 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~-~~~~~~~~~~~~~~~~gn~~~~  181 (312)
                      +++||+|+|..++|+.    .+...+++++.++|||||++++..++........... .......+.             
T Consensus       134 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  196 (285)
T 4htf_A          134 ETPVDLILFHAVLEWV----ADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGM-------------  196 (285)
T ss_dssp             SSCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTC-------------
T ss_pred             CCCceEEEECchhhcc----cCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhc-------------
Confidence            6899999999999983    2357899999999999999999998876543221100 000000000             


Q ss_pred             ceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc---hHHHHhhH---HHHHHHH
Q 021467          182 ESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL---NEFYDDNR---ALFAGML  255 (312)
Q Consensus       182 ~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f---~~~~~~~~---~~~~~~~  255 (312)
                                   ....+.          ...+.+..+.+.+.++++++||+++....+   .++.....   ..+..++
T Consensus       197 -------------~~~~~~----------~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~~~~l~  253 (285)
T 4htf_A          197 -------------PKKKKR----------TLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLREKHQQRDCYEALL  253 (285)
T ss_dssp             -------------CCC--------------CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSSTTHHHHTHHHHH
T ss_pred             -------------cccccc----------cCCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccccccCcccHHHHH
Confidence                         000000          001234568899999999999999977654   44432211   1133333


Q ss_pred             H---hcCCCCCCCCCCCChhHHHHhhhheeeEEeecCC
Q 021467          256 M---SAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKPDP  290 (312)
Q Consensus       256 ~---~~~~~~~~~~~~l~~~e~e~~~ly~~f~F~K~~~  290 (312)
                      +   ..+          ....+...+-|..++.+|...
T Consensus       254 ~~e~~~~----------~~~~~~~~~~~~~~varK~~~  281 (285)
T 4htf_A          254 ELETRYC----------RQEPYITLGRYIHVTARKPQS  281 (285)
T ss_dssp             HHHHHHT----------TSTTGGGGCSEEEEEEECCCC
T ss_pred             HHHHHhc----------CCChHHHHHhheEEEEEcCCc
Confidence            2   111          012344467788889998764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.76  E-value=4.1e-18  Score=146.37  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=88.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----------CCceEEEEEcCCCCCchhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----------KNFIAEFFEADPCAENFET   97 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~-----------~~~~~~f~~~D~~~~~~~~   97 (312)
                      ..++.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++.....           ...+++++++|+.+.++  
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~--   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--   96 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc--
Confidence            45788999999999998888877654 99999999999999998864210           01248999999988765  


Q ss_pred             hhhhcC-CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           98 QMQEKA-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        98 ~~~~~~-~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                          .+ ++||+|++..++|+  .+.+....++++++++|||||++++.+
T Consensus        97 ----~~~~~fD~v~~~~~l~~--l~~~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           97 ----RDIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             ----HHHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ----ccCCCEEEEEECcchhh--CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence                33 68999999999987  456778889999999999999955554

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.75  E-value=4.6e-17  Score=144.70  Aligned_cols=107  Identities=14%  Similarity=0.241  Sum_probs=90.0

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +....+++.+|||||||+|..+..++..+ .+|+|+|+|+.+++.|+++..      ++.++++|+...++       ++
T Consensus        44 l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~  109 (263)
T 3pfg_A           44 VRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GR  109 (263)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SC
T ss_pred             HHhhCCCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cC
Confidence            33445677899999999998888776654 489999999999999999865      27899999987554       47


Q ss_pred             ceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 ~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +||+|+|.. ++|+ +.+.++...+++++.++|||||.+++..
T Consensus       110 ~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          110 RFSAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             CEEEEEECTTGGGG-SCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CcCEEEEcCchhhh-cCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            899999998 8998 4556788999999999999999999973

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.75  E-value=6.9e-17  Score=145.67  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=95.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC---ceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN---FIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~---~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .++.+|||||||+|..+..++..+. +|+|+|+|+.|++.|+++....+..   .++.+..+|+...+-  .+ ..+++|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~-~~~~~f  131 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK--DV-PAGDGF  131 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH--HS-CCTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc--cc-ccCCCe
Confidence            3678999999999988888877755 9999999999999999876432211   236788888765330  00 146899


Q ss_pred             eEEEec-cchhhhcC---CHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          107 DLVCCF-QHLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       107 D~V~~~-~~lh~~~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |+|+|. .++||+..   +.+....+++++.++|||||++++++|+.+.+..
T Consensus       132 D~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~  183 (293)
T 3thr_A          132 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  183 (293)
T ss_dssp             EEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhh
Confidence            999998 88888432   2577899999999999999999999999877764

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.75  E-value=1.2e-17  Score=149.10  Aligned_cols=133  Identities=17%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             hHHhHHHHHHHHHHHHh---cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC--------
Q 021467           12 THHRLYEFAKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN--------   80 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~---~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~--------   80 (312)
                      +...+.+|+...+-+.+   ..++.+|||||||+|......+..+..+|+|+|+|+.||+.|+++.+.....        
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~  112 (263)
T 2a14_A           33 PEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVK  112 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHH
Confidence            33347788876665544   2367899999999996655555556568999999999999999876543210        


Q ss_pred             --------------------ceEE-EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC
Q 021467           81 --------------------FIAE-FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG  139 (312)
Q Consensus        81 --------------------~~~~-f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG  139 (312)
                                          ..+. ++++|+.........  ..++||+|++.+++|++..+.++...++++++++||||
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG  190 (263)
T 2a14_A          113 FACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG  190 (263)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred             HHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCcc--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence                                1133 889999874211000  24689999999999997677888999999999999999


Q ss_pred             cEEEEEe
Q 021467          140 GYFLGIT  146 (312)
Q Consensus       140 G~~i~~~  146 (312)
                      |+|+++.
T Consensus       191 G~li~~~  197 (263)
T 2a14_A          191 GHLVTTV  197 (263)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999984

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.75  E-value=6.8e-17  Score=143.11  Aligned_cols=158  Identities=17%  Similarity=0.200  Sum_probs=121.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....   .+++++++|+...++      ++++||+|
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  124 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEF------PENNFDLI  124 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCC------CTTCEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCC------CCCcEEEE
Confidence            367899999999998888887753459999999999999999987653   248999999988665      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH---HHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST---IWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI  186 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~---l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i  186 (312)
                      ++..++|+  .+..+...+++++.++|||||.++++.+....   +...+.....                         
T Consensus       125 ~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~-------------------------  177 (266)
T 3ujc_A          125 YSRDAILA--LSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVK-------------------------  177 (266)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHH-------------------------
T ss_pred             eHHHHHHh--cChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHh-------------------------
Confidence            99999998  45688999999999999999999998654321   1000000000                         


Q ss_pred             EecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhH
Q 021467          187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNR  248 (312)
Q Consensus       187 ~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~  248 (312)
                                           ..    ...+.+.+.+.++++++||+.+....+...|....
T Consensus       178 ---------------------~~----~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~  214 (266)
T 3ujc_A          178 ---------------------QR----KYTLITVEEYADILTACNFKNVVSKDLSDYWNQLL  214 (266)
T ss_dssp             ---------------------HH----TCCCCCHHHHHHHHHHTTCEEEEEEECHHHHHHHH
T ss_pred             ---------------------cC----CCCCCCHHHHHHHHHHcCCeEEEEEeCCHHHHHHH
Confidence                                 00    01244788899999999999999998887776543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.75  E-value=1.1e-18  Score=155.56  Aligned_cols=103  Identities=16%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..+.+.+.+|||||||+|..+..++.. ..+|+|+|+|+.|++.|+++       .++.++++|+.+.++      ++++
T Consensus        34 ~~~~~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~------~~~s   99 (257)
T 4hg2_A           34 GEVAPARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGL------PPAS   99 (257)
T ss_dssp             HHHSSCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCC------CSSC
T ss_pred             HHhcCCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcc------cCCc
Confidence            345566789999999999877777654 46999999999999887642       138999999988777      6799


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ||+|+|..++|+ +.    ...++++++++|||||+|++...
T Consensus       100 fD~v~~~~~~h~-~~----~~~~~~e~~rvLkpgG~l~~~~~  136 (257)
T 4hg2_A          100 VDVAIAAQAMHW-FD----LDRFWAELRRVARPGAVFAAVTY  136 (257)
T ss_dssp             EEEEEECSCCTT-CC----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEeeehhH-hh----HHHHHHHHHHHcCCCCEEEEEEC
Confidence            999999999998 33    45789999999999999988743

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.74  E-value=2.4e-17  Score=149.46  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhh
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~  100 (312)
                      .++..+..++.+|||||||+|..+..++..+ .+|+|+|+|+.+++.|+++....+..  .++.++++|+.+.++     
T Consensus        74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-----  147 (299)
T 3g2m_A           74 EFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-----  147 (299)
T ss_dssp             HHHHHHCCCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-----
T ss_pred             HHHHhhCCCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-----
Confidence            3444444555699999999998888887764 58999999999999999998764311  248999999987554     


Q ss_pred             hcCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          101 EKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       101 ~~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                        +++||+|+|.+ ++|+  .+.++...+++++.++|||||+|++.+++....
T Consensus       148 --~~~fD~v~~~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          148 --DKRFGTVVISSGSINE--LDEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             --SCCEEEEEECHHHHTT--SCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             --CCCcCEEEECCccccc--CCHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence              57899998764 4665  567788999999999999999999999998665

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.74  E-value=3.1e-17  Score=144.88  Aligned_cols=106  Identities=18%  Similarity=0.146  Sum_probs=91.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....    ++.++++|+...++      ++++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  113 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP----VVCYEQKAIEDIAI------EPDAYNVVL  113 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCT----TEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccC----CeEEEEcchhhCCC------CCCCeEEEE
Confidence            67899999999998888887776669999999999999999987632    38999999877655      568999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |..++|+.    ++...+++++.++|||||.+++++++..
T Consensus       114 ~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~  149 (253)
T 3g5l_A          114 SSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHPV  149 (253)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             Echhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence            99999983    4478899999999999999999988863

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.73  E-value=5.5e-17  Score=139.93  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=91.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.|+++....+.. ++.++++|+...++      ++++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  107 (219)
T 3dh0_A           35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPL------PDNTV  107 (219)
T ss_dssp             CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSS------CSSCE
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCC------CCCCe
Confidence            4578899999999999888887663  459999999999999999998765532 48999999987665      56889


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|++..++|+.    .+...+++++.++|||||.++++.++
T Consensus       108 D~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~  145 (219)
T 3dh0_A          108 DFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDWK  145 (219)
T ss_dssp             EEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEec
Confidence            999999999983    34678999999999999999998544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.73  E-value=1.2e-16  Score=141.69  Aligned_cols=105  Identities=17%  Similarity=0.259  Sum_probs=87.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++... .+|+|+|+|+.|++.|+++....+.. ++.+.++|+...++      ++++||+|
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~------~~~~fD~V  107 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPF------TDERFHIV  107 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCS------CTTCEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCC------CCCCEEEE
Confidence            478899999999998777776655 49999999999999999998765422 48999999988766      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++..++|+.    .+...+++++.++|||||+++++.
T Consensus       108 ~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          108 TCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            999999983    245789999999999999999873

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.73  E-value=1.1e-16  Score=142.51  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=93.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+.+++.|+++....+...+++++++|+.+.++      ++++||+|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~i  118 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF------RNEELDLI  118 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC------CCCCEEEE
Confidence            478899999999998888887776669999999999999999998876655569999999987665      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|..++|+.     +...+++++.++|||||+++++.+.
T Consensus       119 ~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          119 WSEGAIYNI-----GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             EESSCGGGT-----CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             EEcCCceec-----CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999999983     3678899999999999999998654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.73  E-value=1.4e-17  Score=145.82  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++..+. +|+|+|+|+.+++.|+++...     ++.++++|+.+. .      ++++||+|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~------~~~~fD~v~  108 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-Q------LPRRYDNIV  108 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-C------CSSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-C------cCCcccEEE
Confidence            677999999999987777765544 899999999999999998754     389999998764 2      468899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHH-hccCCCcEEEEEecChhHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~-~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      |..++|+.    .+...+++++. ++|||||++++++|+...+....
T Consensus       109 ~~~~l~~~----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~  151 (250)
T 2p7i_A          109 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI  151 (250)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHH
T ss_pred             EhhHHHhh----cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHH
Confidence            99999983    23578999999 99999999999999987655433

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.73  E-value=2.1e-16  Score=144.45  Aligned_cols=177  Identities=14%  Similarity=0.161  Sum_probs=122.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.+.++|+.+.         +++||+|
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~fD~v  159 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVDRI  159 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCSEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------CCCcCEE
Confidence            4788999999999988887776623499999999999999999988765545589999997542         2789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE  189 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~  189 (312)
                      ++..++|+  .+.++...+++++.++|||||.+++..++....... ...                +       +.+.+.
T Consensus       160 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~----------------~-------~~~~~~  213 (318)
T 2fk8_A          160 VSIEAFEH--FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEM-AAR----------------G-------KKLSFE  213 (318)
T ss_dssp             EEESCGGG--TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHH-HTT----------------C-------HHHHHH
T ss_pred             EEeChHHh--cCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhh-hhc----------------c-------cccccc
Confidence            99999998  334668899999999999999999986655332110 000                0       000000


Q ss_pred             ccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHH
Q 021467          190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALF  251 (312)
Q Consensus       190 ~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~  251 (312)
                      .  .....|-.+|.|        ...++.+.+.+.++++++||+++....+...|......|
T Consensus       214 ~--~~~~~~~~~~~~--------~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w  265 (318)
T 2fk8_A          214 T--ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIW  265 (318)
T ss_dssp             H--HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHH
T ss_pred             c--cchhhHHHHhcC--------CCCcCCCHHHHHHHHHhCCCEEEEEEecchhHHHHHHHH
Confidence            0  000000001111        012355789999999999999999888877776544444

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.73  E-value=1.6e-16  Score=138.99  Aligned_cols=125  Identities=18%  Similarity=0.251  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        16 ~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      ...++...+ .....++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|+++....+.  ++.++++|+...++
T Consensus        23 ~~~~~~~~l-~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           23 WSDFIIEKC-VENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHH-HTTTCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred             HHHHHHHHH-HHhCCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc
Confidence            334444433 2333467899999999998888877664 5899999999999999999876542  48899999876554


Q ss_pred             hhhhhhcCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467           96 ETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                            + ++||+|++.. ++|| +.+.++...+++++.++|||||.+++.+++...+
T Consensus        99 ------~-~~fD~v~~~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  148 (246)
T 1y8c_A           99 ------N-RKFDLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             ------S-CCEEEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             ------c-CCceEEEEcCccccc-cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHH
Confidence                  3 7899999998 9998 3466889999999999999999999999987654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=1.5e-17  Score=141.97  Aligned_cols=142  Identities=14%  Similarity=0.054  Sum_probs=111.6

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      +.+|||+|||+|..+..++..+. +|+|+|+|+.|++.|+++..      ++.++++|+.+.++      ++++||+|++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~------~~~~fD~v~~  108 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHP------SVTFHHGTITDLSD------SPKRWAGLLA  108 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHCT------TSEEECCCGGGGGG------SCCCEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhCC------CCeEEeCccccccc------CCCCeEEEEe
Confidence            78999999999988887777644 89999999999999998843      27899999877554      5689999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEeccc
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE  191 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~  191 (312)
                      ..++|+  .+.++...+++++.++|||||.++++.++....                               .  .+.. 
T Consensus       109 ~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-------------------------------~--~~~~-  152 (203)
T 3h2b_A          109 WYSLIH--MGPGELPDALVALRMAVEDGGGLLMSFFSGPSL-------------------------------E--PMYH-  152 (203)
T ss_dssp             ESSSTT--CCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSC-------------------------------E--EECC-
T ss_pred             hhhHhc--CCHHHHHHHHHHHHHHcCCCcEEEEEEccCCch-------------------------------h--hhhc-
Confidence            999998  345568899999999999999999987664210                               0  0100 


Q ss_pred             CCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467          192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (312)
Q Consensus       192 ~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~  241 (312)
                                       ..  ...+..+.+.+.++++++||+++....+.
T Consensus       153 -----------------~~--~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          153 -----------------PV--ATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             -----------------SS--SCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             -----------------hh--hhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence                             00  01245678899999999999999987664

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.72  E-value=2e-16  Score=143.07  Aligned_cols=110  Identities=12%  Similarity=0.022  Sum_probs=93.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+...++      ++++||+|
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~v  154 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDFI  154 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC------CCCCEeEE
Confidence            578899999999998888877663349999999999999999998776544458999999988765      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++..++|+. .   +...+++++.++|||||+++++.+..
T Consensus       155 ~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          155 WSQDAFLHS-P---DKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             EEESCGGGC-S---CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             Eecchhhhc-C---CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            999999883 2   27889999999999999999986653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.72  E-value=1.2e-16  Score=141.15  Aligned_cols=108  Identities=16%  Similarity=0.113  Sum_probs=93.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+...++      ++++||+|
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~fD~v  118 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF------QNEELDLI  118 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS------CTTCEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC------CCCCEEEE
Confidence            467899999999998888887775569999999999999999999887655569999999977665      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|..++|+.     +...+++++.++|||||+++++.++
T Consensus       119 ~~~~~l~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          119 WSEGAIYNI-----GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             EEESCSCCC-----CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             EecChHhhc-----CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            999999883     3678999999999999999998654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.72  E-value=1.8e-16  Score=144.68  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+...++.++++|+.+.++      ++++||+|
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V  189 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF------DKGAVTAS  189 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC------CTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC------CCCCEeEE
Confidence            467899999999998888877663458999999999999999999877655569999999988665      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++..++|+. .    ...+++++.++|||||+++++.+..
T Consensus       190 ~~~~~l~~~-~----~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          190 WNNESTMYV-D----LHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEESCGGGS-C----HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EECCchhhC-C----HHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999999983 2    8899999999999999999986554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.72  E-value=8.2e-17  Score=141.86  Aligned_cols=107  Identities=18%  Similarity=0.154  Sum_probs=91.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....   .++.++++|+...++      ++++||+|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~------~~~~fD~v  162 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATL------PPNTYDLI  162 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCC------CSSCEEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCC------CCCCeEEE
Confidence            367899999999998887776666668999999999999999987653   348999999877655      46799999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++..++|+  .+.++...+++++.++|||||+++++.+
T Consensus       163 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          163 VIQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEcchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99999998  4557789999999999999999999865

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.72  E-value=1.8e-16  Score=138.22  Aligned_cols=107  Identities=19%  Similarity=0.257  Sum_probs=91.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+   ++.++++|+.+.++      . ++||+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~------~-~~fD~  112 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF------E-EKYDM  112 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC------C-SCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC------C-CCceE
Confidence            36789999999999888887766 35699999999999999999986544   48999999988665      3 79999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+  .+......+++++.++|||||.++++.+.
T Consensus       113 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  150 (234)
T 3dtn_A          113 VVSALSIHH--LEDEDKKELYKRSYSILKESGIFINADLV  150 (234)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEeCcccc--CCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            999999998  46666778999999999999999988543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=6e-17  Score=141.57  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=89.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++. ...+|+|+|+|+.+++.|+++....+...++.++++|+.+.+.       +.+||+|+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~v~  137 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDLIF  137 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeEEE
Confidence            456999999999987776654 4558999999999999999998764434459999999987542       46899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +..++|+  .+.++...+++++.++|||||++++...+
T Consensus       138 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          138 DYVFFCA--IEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             EESSTTT--SCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EChhhhc--CCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            9999998  44567889999999999999999986443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.71  E-value=6.9e-17  Score=138.42  Aligned_cols=124  Identities=18%  Similarity=0.209  Sum_probs=101.9

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++..++.++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....   .++.++++|+...++      ++
T Consensus        35 ~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~~~~~------~~  105 (215)
T 2pxx_A           35 LLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVRKLDF------PS  105 (215)
T ss_dssp             HHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTTSCCS------CS
T ss_pred             HHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchhcCCC------CC
Confidence            344556788999999999998888887776558999999999999999987642   238899999987655      56


Q ss_pred             CceeEEEeccchhhhc-----------CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          104 NQADLVCCFQHLQMCF-----------ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~-----------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      ++||+|++..++++..           ++......+++++.++|||||.+++..++.......+
T Consensus       106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~  169 (215)
T 2pxx_A          106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRH  169 (215)
T ss_dssp             SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHH
T ss_pred             CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHH
Confidence            7899999999888754           2366789999999999999999999999887665544

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.71  E-value=1.3e-16  Score=137.82  Aligned_cols=111  Identities=18%  Similarity=0.208  Sum_probs=90.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEEcCCCCCchhhhhhhcCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~----~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|++++...+...    +++++++|+...+.      .++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK------RFS  101 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG------GGT
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc------ccC
Confidence            467899999999998887776654 3699999999999999999986543221    48999999866554      457


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+|..++|+  .+.++...+++++.++|||||. ++++|+.
T Consensus       102 ~fD~V~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~-~i~~~~~  143 (219)
T 3jwg_A          102 GYDAATVIEVIEH--LDENRLQAFEKVLFEFTRPQTV-IVSTPNK  143 (219)
T ss_dssp             TCSEEEEESCGGG--CCHHHHHHHHHHHHTTTCCSEE-EEEEEBG
T ss_pred             CCCEEEEHHHHHh--CCHHHHHHHHHHHHHhhCCCEE-EEEccch
Confidence            9999999999998  4667778999999999999994 4555653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.71  E-value=4.1e-17  Score=143.13  Aligned_cols=144  Identities=20%  Similarity=0.237  Sum_probs=110.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~~~fD  107 (312)
                      +++.+|||||||+|..+..+...+. +|+|+|+|+.+++.|+++         +.++++|+.+.  ++      ++++||
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~------~~~~fD  103 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL------PDKYLD  103 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS------CTTCBS
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc------CCCCee
Confidence            4778999999999988877766644 899999999999998877         45777776542  22      468999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT  187 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~  187 (312)
                      +|+|..++|+  ...++...+++++.++|||||++++.+|+...+......                         |   
T Consensus       104 ~i~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-------------------------~---  153 (240)
T 3dli_A          104 GVMISHFVEH--LDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF-------------------------Y---  153 (240)
T ss_dssp             EEEEESCGGG--SCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHH-------------------------T---
T ss_pred             EEEECCchhh--CCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHH-------------------------h---
Confidence            9999999998  345567899999999999999999999987655432210                         0   


Q ss_pred             ecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467          188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN  241 (312)
Q Consensus       188 f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~  241 (312)
                        .    .|                ...+..+.+.+.++++++||+.+....+.
T Consensus       154 --~----~~----------------~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  185 (240)
T 3dli_A          154 --I----DP----------------THKKPVHPETLKFILEYLGFRDVKIEFFE  185 (240)
T ss_dssp             --T----ST----------------TCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             --c----Cc----------------cccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence              0    00                01134567889999999999999877654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.71  E-value=3.8e-16  Score=134.74  Aligned_cols=105  Identities=16%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++.. .    ++.++++|+...++      . ++||+|
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-~----~~~~~~~d~~~~~~------~-~~fD~v  110 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKEKLP-K----EFSITEGDFLSFEV------P-TSIDTI  110 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTT-CEEEEECSCHHHHHHHHHHSC-T----TCCEESCCSSSCCC------C-SCCSEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCC-CeEEEEeCCHHHHHHHHHhCC-C----ceEEEeCChhhcCC------C-CCeEEE
Confidence            477899999999998888777664 599999999999999999876 1    27899999988665      4 899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|..++|+  ........+++++.++|||||.++++.++.
T Consensus       111 ~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          111 VSTYAFHH--LTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             EECcchhc--CChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            99999998  445555669999999999999999996554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.70  E-value=5.5e-16  Score=136.03  Aligned_cols=107  Identities=19%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....+.. ++.++++|+...++      ++++||+
T Consensus        19 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~   90 (239)
T 1xxl_A           19 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPF------PDDSFDI   90 (239)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCS------CTTCEEE
T ss_pred             cCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCC------CCCcEEE
Confidence            4578999999999998777776655 49999999999999999988765422 48899999977655      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+|..++|+.    .+...+++++.++|||||+++++.+
T Consensus        91 v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           91 ITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9999999883    2467899999999999999998744

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.70  E-value=3.5e-16  Score=134.98  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=90.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEEcCCCCCchhhhhhhcCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~----~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|++++...+...    ++.++++|+...+.      ..+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~~~  101 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK------RFH  101 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG------GGC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc------cCC
Confidence            367899999999998888877753 3699999999999999999986554322    58999999866554      457


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+|..++|+  .+.++...+++++.++|||||.++ ++++.
T Consensus       102 ~fD~v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~li-~~~~~  143 (217)
T 3jwh_A          102 GYDAATVIEVIEH--LDLSRLGAFERVLFEFAQPKIVIV-TTPNI  143 (217)
T ss_dssp             SCSEEEEESCGGG--CCHHHHHHHHHHHHTTTCCSEEEE-EEEBH
T ss_pred             CcCEEeeHHHHHc--CCHHHHHHHHHHHHHHcCCCEEEE-EccCc
Confidence            9999999999998  467778999999999999999555 45554

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.70  E-value=1.7e-16  Score=144.42  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHH--HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWE--TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~--~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .....++.+|||+|||+|..+..++  ..+..+|+|+|+|+.+++.|+++....+...+++++++|+.+.++      + 
T Consensus       113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-  185 (305)
T 3ocj_A          113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT------R-  185 (305)
T ss_dssp             HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC------C-
T ss_pred             HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc------c-
Confidence            4556788999999999998777763  335669999999999999999999876655569999999987655      4 


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++||+|++..++|+ +.+......+++++.++|||||++++....
T Consensus       186 ~~fD~v~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          186 EGYDLLTSNGLNIY-EPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             SCEEEEECCSSGGG-CCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCeEEEEECChhhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            89999999999987 456777888999999999999999998544

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.70  E-value=1.1e-16  Score=137.50  Aligned_cols=121  Identities=15%  Similarity=0.064  Sum_probs=98.0

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      +...+++....+..+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.++++|+.+.++    
T Consensus        32 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  107 (219)
T 3dlc_A           32 IAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI----  107 (219)
T ss_dssp             HHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS----
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC----
Confidence            3344455544344499999999998888887765569999999999999999998876654569999999988665    


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                        ++++||+|++..++|+.    .+...+++++.++|||||.+++..+...
T Consensus       108 --~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A          108 --EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             --CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             --CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence              56899999999999983    4467899999999999999999865543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.69  E-value=1.6e-16  Score=137.35  Aligned_cols=111  Identities=19%  Similarity=0.231  Sum_probs=89.0

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhh
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQ  100 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~  100 (312)
                      .++.....++.+|||+|||+|..+..+...+ .+++|+|+|+.+++.|+++.        ..++++|+...  ++     
T Consensus        24 ~l~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~-----   89 (230)
T 3cc8_A           24 NLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY-----   89 (230)
T ss_dssp             HHHTTCCTTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS-----
T ss_pred             HHHHHhccCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC-----
Confidence            3333333578899999999998888777664 79999999999999988765        25788998762  33     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                       ++++||+|++..++|+. .   +...+++++.++|+|||++++++|+....
T Consensus        90 -~~~~fD~v~~~~~l~~~-~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  136 (230)
T 3cc8_A           90 -EEEQFDCVIFGDVLEHL-F---DPWAVIEKVKPYIKQNGVILASIPNVSHI  136 (230)
T ss_dssp             -CTTCEEEEEEESCGGGS-S---CHHHHHHHTGGGEEEEEEEEEEEECTTSH
T ss_pred             -CCCccCEEEECChhhhc-C---CHHHHHHHHHHHcCCCCEEEEEeCCcchH
Confidence             45789999999999883 2   34689999999999999999999987544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.69  E-value=8e-17  Score=143.11  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh----------c------CCCceEEEEEcCCCCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----------Q------RKNFIAEFFEADPCAE   93 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~----------~------~~~~~~~f~~~D~~~~   93 (312)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++...          .      ....+++++++|+.+.
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4678999999999988888877655 999999999999999887641          0      0123589999999876


Q ss_pred             chhhhhhhcC-CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           94 NFETQMQEKA-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        94 ~~~~~~~~~~-~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +.      .+ ++||+|++..++++  .+.+....+++++.++|||||++++.+
T Consensus       146 ~~------~~~~~FD~V~~~~~l~~--l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 PR------ANIGKFDRIWDRGALVA--INPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GG------GCCCCEEEEEESSSTTT--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Cc------ccCCCEEEEEEhhhhhh--CCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            54      33 79999999988887  345667889999999999999997553

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.68  E-value=2.6e-16  Score=135.51  Aligned_cols=108  Identities=20%  Similarity=0.234  Sum_probs=92.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....+   +++++++|+.+..       ++++||+|+
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~-------~~~~fD~v~  119 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS-------TAELFDLIV  119 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC-------CSCCEEEEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC-------CCCCccEEE
Confidence            56799999999998887776655 599999999999999999987643   4899999997754       258899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |..++|| +.+.+....+++++.++|||||.++++++...
T Consensus       120 ~~~~l~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          120 VAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             EESCGGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EccHHHh-CCCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence            9999998 45577788999999999999999999887764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.68  E-value=4.4e-16  Score=134.77  Aligned_cols=114  Identities=23%  Similarity=0.279  Sum_probs=95.6

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++++.+|||+|||+|..+..+..... +++|+|+|+.+++.|+++....+  .+++++++|+.+.++      ++++|
T Consensus        34 ~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~~  104 (227)
T 1ve3_A           34 KYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------EDKTF  104 (227)
T ss_dssp             HSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------CTTCE
T ss_pred             HhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCC------CCCcE
Confidence            4455688999999999988877766655 99999999999999999987654  348899999987654      45799


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      |+|++..++|+  .+..+...+++++.++|||||.+++..++...
T Consensus       105 D~v~~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  147 (227)
T 1ve3_A          105 DYVIFIDSIVH--FEPLELNQVFKEVRRVLKPSGKFIMYFTDLRE  147 (227)
T ss_dssp             EEEEEESCGGG--CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             EEEEEcCchHh--CCHHHHHHHHHHHHHHcCCCcEEEEEecChHH
Confidence            99999998665  56778899999999999999999999888644

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=2.2e-16  Score=139.44  Aligned_cols=109  Identities=20%  Similarity=0.227  Sum_probs=91.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.+++.|+++....+...++.+.++|+.+.++       +++||+
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  106 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-------NEKCDV  106 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-------SSCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-------CCCCCE
Confidence            4578899999999998888777664559999999999999999998876544458999999977543       478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|..++|+.    .+...+++++.++|||||+++++.+.
T Consensus       107 V~~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          107 AACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             EEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            9999999873    24688899999999999999998654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.67  E-value=1.4e-15  Score=130.53  Aligned_cols=105  Identities=20%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|++.  .   ..++.++++|+.+. +      ++++||+|
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~--~---~~~~~~~~~d~~~~-~------~~~~~D~v  111 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRH--G---LDNVEFRQQDLFDW-T------PDRQWDAV  111 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHGGG--C---CTTEEEEECCTTSC-C------CSSCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHhc--C---CCCeEEEecccccC-C------CCCceeEE
Confidence            467899999999998888777764 5999999999999999881  1   12389999999775 3      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|..++|+  ...+....+++++.++|||||.++++.++.
T Consensus       112 ~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          112 FFAHWLAH--VPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEechhhc--CCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            99999998  456667899999999999999999997665

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.67  E-value=2.7e-16  Score=135.03  Aligned_cols=104  Identities=18%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++..       +.+.++|+...+       .+++||+
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~-------~~~~~~d~~~~~-------~~~~fD~  105 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLG-------RPVRTMLFHQLD-------AIDAYDA  105 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHT-------SCCEECCGGGCC-------CCSCEEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcC-CeEEEECCCHHHHHHHHHhcC-------CceEEeeeccCC-------CCCcEEE
Confidence            3478899999999998888777664 499999999999999999872       567788876543       3589999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|..++|+  ...++...+++++.++|||||+++++++..
T Consensus       106 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  144 (211)
T 3e23_A          106 VWAHACLLH--VPRDELADVLKLIWRALKPGGLFYASYKSG  144 (211)
T ss_dssp             EEECSCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEecCchhh--cCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            999999998  557788999999999999999999986553

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.67  E-value=6.7e-16  Score=132.01  Aligned_cols=111  Identities=16%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++....+  .++.++++|+...++      ++++||+
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~~~fD~   92 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPF------KDESMSF   92 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCS------CTTCEEE
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCC------CCCceeE
Confidence            45678999999999977555544455699999999999999999886543  237889999987665      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++|+  .+.++...+++++.++|||||.+++..++.
T Consensus        93 v~~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           93 VYSYGTIFH--MRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             EEECSCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             EEEcChHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            999999988  357889999999999999999999987654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.67  E-value=4.5e-16  Score=140.41  Aligned_cols=128  Identities=16%  Similarity=0.125  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhc---CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC--------------
Q 021467           17 YEFAKTALIKIYS---HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--------------   79 (312)
Q Consensus        17 ~n~vk~~li~~~~---~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~--------------   79 (312)
                      ..|....+.+.+.   .++.+|||||||+|............+|+|+|+|+.|++.|+++.+....              
T Consensus        54 ~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~  133 (289)
T 2g72_A           54 GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI  133 (289)
T ss_dssp             HHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh
Confidence            3444444554442   26789999999999733322233456999999999999999986543110              


Q ss_pred             ---------------CceEEEEEcCCCC-CchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467           80 ---------------NFIAEFFEADPCA-ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus        80 ---------------~~~~~f~~~D~~~-~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                                     ...+.++++|+.. .++... ..++++||+|+|.+++|+...+.++...+|+++.++|||||+|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~  212 (289)
T 2g72_A          134 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAG-SPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  212 (289)
T ss_dssp             HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSS-CSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCcccchhhhHHHHHhhhceEEecccCCCCCcccc-ccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence                           0115677889876 333110 00346799999999999866667789999999999999999999


Q ss_pred             EE
Q 021467          144 GI  145 (312)
Q Consensus       144 ~~  145 (312)
                      ++
T Consensus       213 ~~  214 (289)
T 2g72_A          213 LI  214 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.67  E-value=1.1e-15  Score=136.61  Aligned_cols=109  Identities=22%  Similarity=0.311  Sum_probs=91.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....+.. ++.++++|+...++      ++++||+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~fD~  108 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSFDH  108 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCeeE
Confidence            578999999999998888777663 569999999999999999998765432 48999999987665      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++|+. .   +...+++++.++|||||++++..++.
T Consensus       109 v~~~~~l~~~-~---~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          109 IFVCFVLEHL-Q---SPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEESCGGGC-S---CHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             EEEechhhhc-C---CHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            9999999883 2   35688999999999999999987654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.67  E-value=1.4e-15  Score=136.98  Aligned_cols=106  Identities=24%  Similarity=0.333  Sum_probs=90.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+.  ++.++++|+.+.++       +++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD   91 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------NDKYD   91 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CCCee
Confidence            46789999999999887777665 2 36999999999999999999876542  69999999987554       36899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++..++|+.    .+...+++++.++|||||++++..|+
T Consensus        92 ~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           92 IAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            99999999883    34578999999999999999999988

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.67  E-value=4.7e-16  Score=130.77  Aligned_cols=118  Identities=10%  Similarity=0.027  Sum_probs=88.0

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++...+.++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++.+..+. .++++++.|......   .  .+
T Consensus        15 ~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~---~--~~   87 (185)
T 3mti_A           15 FLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH---Y--VR   87 (185)
T ss_dssp             HHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG---T--CC
T ss_pred             HHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh---h--cc
Confidence            34556678899999999999888887766 66999999999999999999987653 358888866543211   0  35


Q ss_pred             CceeEEEeccchhh-----hcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          104 NQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       104 ~~fD~V~~~~~lh~-----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++||+|++......     .....+....+++++.++|||||++++....
T Consensus        88 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           88 EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            78999987743211     1124567788999999999999999988543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.67  E-value=6.8e-16  Score=139.90  Aligned_cols=112  Identities=13%  Similarity=0.113  Sum_probs=90.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..++.+|||||||+|..+..++.  .+..+|+|+|+|+.+++.|+++.... +...+++++++|+.+.++........++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            45789999999999988888875  46779999999999999999998765 2234599999999886652100001279


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|+|..++|+.     +...+++++.++|||||.+++.
T Consensus       114 fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i~  148 (299)
T 3g5t_A          114 IDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAIW  148 (299)
T ss_dssp             EEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEEE
Confidence            9999999999984     5788999999999999999883

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=4.9e-16  Score=139.38  Aligned_cols=103  Identities=24%  Similarity=0.270  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++. ...+|+|+|+|+.|++.|+++..      ++.+.++|+...++       +++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~v  121 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP------HLHFDVADARNFRV-------DKPLDAV  121 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT------TSCEEECCTTTCCC-------SSCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC------CCEEEECChhhCCc-------CCCcCEE
Confidence            4678999999999988887776 55699999999999999998862      26789999877553       4789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ++..++|+.-    +...+++++.++|||||++++.+++..
T Consensus       122 ~~~~~l~~~~----d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          122 FSNAMLHWVK----EPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             EEESCGGGCS----CHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEcchhhhCc----CHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            9999999832    367899999999999999999987753

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.66  E-value=1.2e-15  Score=134.37  Aligned_cols=108  Identities=28%  Similarity=0.382  Sum_probs=89.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++....+.  ++.++++|+.+.++       .++||+|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~v  109 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFDAV  109 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc-------CCCccEE
Confidence            467899999999998888887765 4999999999999999999876542  48899999877543       3689999


Q ss_pred             Eeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|.++ +++  .+.++...+++++.++|||||.+++.+|+.
T Consensus       110 ~~~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~li~~~~~~  148 (252)
T 1wzn_A          110 TMFFSTIMY--FDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (252)
T ss_dssp             EECSSGGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             EEcCCchhc--CCHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence            99755 444  467889999999999999999999998873

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.8e-16  Score=138.87  Aligned_cols=113  Identities=16%  Similarity=0.007  Sum_probs=88.9

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhhhcC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA  103 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~  103 (312)
                      .....++.+|||||||+|..+..+...+..+|+|+|+|+.|++.|+++....+  .++.++++|+.+.  ++      ++
T Consensus        55 ~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~------~~  126 (236)
T 1zx0_A           55 AAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL------PD  126 (236)
T ss_dssp             HHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS------CT
T ss_pred             hhcCCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc------CC
Confidence            33456788999999999988877755555689999999999999999886644  4589999998654  33      46


Q ss_pred             CceeEEEe-ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          104 NQADLVCC-FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       104 ~~fD~V~~-~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++||+|++ .++++....+....+.+++++.++|||||+|++..
T Consensus       127 ~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            89999999 66543222445667788999999999999998763

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.66  E-value=4.2e-16  Score=133.71  Aligned_cols=115  Identities=20%  Similarity=0.277  Sum_probs=93.6

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++..+..++.+|||+|||+|..+..+   +..+++|+|+|+.+++.|+++.  .    ++.++++|+...++      +
T Consensus        28 ~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~----~~~~~~~d~~~~~~------~   92 (211)
T 2gs9_A           28 RALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P----EATWVRAWGEALPF------P   92 (211)
T ss_dssp             HHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T----TSEEECCCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C----CcEEEEcccccCCC------C
Confidence            345566668899999999999766554   4348999999999999999887  2    27889999887665      5


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      +++||+|++..++|+.    .+...+++++.++|||||.+++++++....+...
T Consensus        93 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~  142 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALVVGVLEALSPWAAL  142 (211)
T ss_dssp             SSCEEEEEEESCTTTC----SCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHH
T ss_pred             CCcEEEEEEcChhhhc----CCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHH
Confidence            6799999999999883    2467899999999999999999999887665544

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.66  E-value=1.6e-15  Score=137.15  Aligned_cols=114  Identities=15%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             CCCEEEEECCCCCccHH----HHHHc-CCCe--EEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhh--
Q 021467           31 PYVTVCDLYCGAGVDVD----KWETA-LIAN--YIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQM--   99 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~----~~~~~-~~~~--v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~--   99 (312)
                      ++.+|||||||+|....    .+... +...  ++|+|+|++|++.|+++......  ..+..+..+++.  ++...+  
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS--EYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH--HHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh--hhhhhhcc
Confidence            56799999999996433    22222 2343  49999999999999999865321  122334444432  221000  


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +.++++||+|+|..++|+.    ++...+|++++++|||||++++..++.+
T Consensus       130 ~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~  176 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGS  176 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             ccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            0135889999999999983    3467889999999999999999866553

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.65  E-value=9.3e-16  Score=134.06  Aligned_cols=114  Identities=17%  Similarity=0.245  Sum_probs=95.3

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++++.+|||+|||+|..+..++..  .+++|+|+|+.+++.|+++....+  .++.++++|+...++       .++|
T Consensus        29 ~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~-------~~~f   97 (243)
T 3d2l_A           29 EQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL-------PEPV   97 (243)
T ss_dssp             HHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC-------SSCE
T ss_pred             HHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC-------CCCc
Confidence            44567899999999999877777655  699999999999999999987543  247899999876544       3789


Q ss_pred             eEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|++.. ++|+ +.+.++...+++++.++|||||.+++.+++...+
T Consensus        98 D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  143 (243)
T 3d2l_A           98 DAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM  143 (243)
T ss_dssp             EEEEECTTGGGG-CCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CEEEEeCCchhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHH
Confidence            9999987 8887 4567889999999999999999999999987654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.65  E-value=4.9e-16  Score=136.35  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=90.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++....+ ..++.++++|+...++      .+++||+|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~------~~~~fD~v~  151 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP------EPDSYDVIW  151 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC------CCCCEEEEE
Confidence            578999999999987777666656699999999999999999987653 2358899999876554      456899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +..++|+  ........+++++.++|||||+++++.+.
T Consensus       152 ~~~~l~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          152 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            9999998  45566789999999999999999998654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.65  E-value=3.4e-16  Score=136.82  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=89.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....    ++.++++|+...++      ++++||+|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~------~~~~fD~v~  112 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----GITYERADLDKLHL------PQDSFDLAY  112 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----SEEEEECCGGGCCC------CTTCEEEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----CceEEEcChhhccC------CCCCceEEE
Confidence            67899999999998888777765559999999999999999887543    38899999877554      468999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +..++|+.    .+...+++++.++|||||++++++++.
T Consensus       113 ~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  147 (243)
T 3bkw_A          113 SSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHP  147 (243)
T ss_dssp             EESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             Eecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence            99999983    246789999999999999999998886

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.9e-15  Score=127.82  Aligned_cols=126  Identities=13%  Similarity=0.011  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        16 ~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      +..++...+......++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+. .+++++++|+.+...
T Consensus        29 ~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~  107 (189)
T 3p9n_A           29 VRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVA  107 (189)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHh
Confidence            3344444443332347889999999999888777777777899999999999999999877654 358999999755321


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHh--ccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~--~LkpGG~~i~~~p~~  149 (312)
                        ..  .+++||+|++...+|+   ..+....+++.+.+  +|+|||++++..+..
T Consensus       108 --~~--~~~~fD~i~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          108 --AG--TTSPVDLVLADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             --HC--CSSCCSEEEECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             --hc--cCCCccEEEECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence              01  2578999999887665   24778899999999  999999999987664

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.64  E-value=1.4e-15  Score=129.04  Aligned_cols=120  Identities=16%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      .++.....++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.|+++....+...+++++++|+.....     
T Consensus        14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----   88 (197)
T 3eey_A           14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----   88 (197)
T ss_dssp             HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----
T ss_pred             HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----
Confidence            344556678899999999999888877765  3469999999999999999998876544469999999865331     


Q ss_pred             hcCCceeEEEeccch-----hhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          101 EKANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       101 ~~~~~fD~V~~~~~l-----h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ..+++||+|++...+     +......+....+++++.++|||||++++...
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            035789999988754     22334566778899999999999999998854

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.64  E-value=5.6e-16  Score=145.69  Aligned_cols=110  Identities=20%  Similarity=0.185  Sum_probs=89.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-----C--CCceEEEEEcCCCCC------c
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-----R--KNFIAEFFEADPCAE------N   94 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~-----~--~~~~~~f~~~D~~~~------~   94 (312)
                      .++.+|||||||+|..+..++..  +..+|+|+|+|+.+++.|+++.+..     +  ...++.|+++|+.+.      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46789999999999888777665  4569999999999999999987643     1  113499999999875      3


Q ss_pred             hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +      ++++||+|++..++|+.    .+...+++++.++|||||++++..+..
T Consensus       162 ~------~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          162 V------PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             C------CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             C------CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            3      56899999999999983    236789999999999999999985443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.64  E-value=1.2e-15  Score=135.07  Aligned_cols=114  Identities=17%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC----------------------------ce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN----------------------------FI   82 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~----------------------------~~   82 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+..                            .+
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            56799999999998777666555458999999999999999987653210                            12


Q ss_pred             E-EEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           83 A-EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        83 ~-~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      + .++++|+........  ...++||+|+|.+++|++..+..+...+++++.++|||||++++..
T Consensus       136 v~~~~~~d~~~~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGG--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             EEEEEECCTTSSSTTTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             heeEEEeeeccCCCCCc--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            6 899999987543110  0127899999999999766678889999999999999999999886

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.64  E-value=2.4e-15  Score=126.45  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++..+.+++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++...      +.++++|+...++      +
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~------~~~~~~d~~~~~~------~  104 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLSVDQI------S  104 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHCTT------SEEEECCTTTSCC------C
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHCC-CcEEEEcCCHHHHHHHHHhCCC------CcEEEcccccCCC------C
Confidence            4677778889999999999998888777664 5999999999999999988642      7889999887654      4


Q ss_pred             CCceeEEEec-cchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~-~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +++||+|++. ..+|+  .+.+....+++++.++|+|||.+++..++.
T Consensus       105 ~~~~D~i~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          105 ETDFDLIVSAGNVMGF--LAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCEEEEEECCCCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCceeEEEECCcHHhh--cChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            6789999998 56776  467778999999999999999999987653

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.63  E-value=2.2e-15  Score=130.28  Aligned_cols=147  Identities=16%  Similarity=0.208  Sum_probs=109.0

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +....+ +.+|||+|||+|..+..+...     +|+|+|+.+++.|+++    +    +.++++|+...++      +++
T Consensus        42 l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----~----~~~~~~d~~~~~~------~~~  101 (219)
T 1vlm_A           42 VKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----G----VFVLKGTAENLPL------KDE  101 (219)
T ss_dssp             HHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----T----CEEEECBTTBCCS------CTT
T ss_pred             HHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----C----CEEEEcccccCCC------CCC
Confidence            444444 889999999999887766433     9999999999999887    2    7889999877654      467


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY  184 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y  184 (312)
                      +||+|++..++|+.    .+...+++++.++|+|||.++++.++....+.......    ..         +.       
T Consensus       102 ~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~----~~---------~~-------  157 (219)
T 1vlm_A          102 SFDFALMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN----KE---------KS-------  157 (219)
T ss_dssp             CEEEEEEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT----TT---------C--------
T ss_pred             CeeEEEEcchHhhc----cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH----hc---------Cc-------
Confidence            89999999999983    24578999999999999999999888765544332110    00         00       


Q ss_pred             EEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467          185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL  240 (312)
Q Consensus       185 ~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f  240 (312)
                                 +.+              ......+.+.+.++++++||+++.....
T Consensus       158 -----------~~~--------------~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          158 -----------VFY--------------KNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             -----------CCS--------------TTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             -----------chh--------------cccccCCHHHHHHHHHHCCCeEEEEecc
Confidence                       000              0113457889999999999999886543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=1.2e-14  Score=129.74  Aligned_cols=117  Identities=13%  Similarity=0.049  Sum_probs=88.1

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHc-CC-CeEEEEeCChH------HHHHHHHHHHhcCCCceEEEEEcC-CCCC
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATS------GIGEARDTWENQRKNFIAEFFEAD-PCAE   93 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~-~~v~giDis~~------~i~~a~~r~~~~~~~~~~~f~~~D-~~~~   93 (312)
                      ++..+ ..++.+|||||||+|..+..++.. +. .+|+|+|+|+.      +++.|++++...+...+++++++| ....
T Consensus        35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  114 (275)
T 3bkx_A           35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDD  114 (275)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTC
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhc
Confidence            34443 457899999999999888887765 22 69999999997      999999998876544468999998 3222


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .+    +.++++||+|++..++|+ +.+.   ..+++.+.++++|||++++....
T Consensus       115 ~~----~~~~~~fD~v~~~~~l~~-~~~~---~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          115 LG----PIADQHFDRVVLAHSLWY-FASA---NALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CG----GGTTCCCSEEEEESCGGG-SSCH---HHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             cC----CCCCCCEEEEEEccchhh-CCCH---HHHHHHHHHHhCCCCEEEEEEec
Confidence            22    114689999999999988 3333   34777777888889999988543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=138.24  Aligned_cols=119  Identities=18%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC-----------------------------
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN-----------------------------   80 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~-----------------------------   80 (312)
                      ++.+|||||||+|..+..++.. +..+|+|+|+|+.||+.|+++.......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999888887776 5679999999999999999886542211                             


Q ss_pred             ----------------------------ceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhc--CCHHHHHHHHH
Q 021467           81 ----------------------------FIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--ETEERARRLLQ  130 (312)
Q Consensus        81 ----------------------------~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~--~~~~~~~~~l~  130 (312)
                                                  .++.|.++|+...... ..+...++||+|+|..+++|..  .+.+....+++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~-~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDD-LVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHH-HHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccc-cccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                        3589999998765411 1111468999999999986621  14567899999


Q ss_pred             HHHhccCCCcEEEEEecChh
Q 021467          131 NVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       131 ~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ++.++|||||+|++...+..
T Consensus       205 ~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHhCCCcEEEEecCCch
Confidence            99999999999999866543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.63  E-value=5.3e-15  Score=131.32  Aligned_cols=114  Identities=16%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++..+++++.+|||+|||+|..+..++..+ .+++|+|+|+.|++.|+++...       .++++|+...++      +
T Consensus        46 ~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~-------~~~~~d~~~~~~------~  111 (260)
T 2avn_A           46 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPF------P  111 (260)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCeEEEeCCCcCHHHHHHHHcC-CeEEEEeCCHHHHHHHHhhcCC-------CEEECcHHHCCC------C
Confidence            3445555678899999999998887776654 5899999999999999988641       178899887665      5


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      +++||+|++..++++...+   ...+++++.++|||||.+++++++....+
T Consensus       112 ~~~fD~v~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~  159 (260)
T 2avn_A          112 SGAFEAVLALGDVLSYVEN---KDKAFSEIRRVLVPDGLLIATVDNFYTFL  159 (260)
T ss_dssp             TTCEEEEEECSSHHHHCSC---HHHHHHHHHHHEEEEEEEEEEEEBHHHHH
T ss_pred             CCCEEEEEEcchhhhcccc---HHHHHHHHHHHcCCCeEEEEEeCChHHHH
Confidence            6899999998765553333   78899999999999999999999876443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.63  E-value=3.1e-15  Score=127.36  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=89.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++++ +|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....+.  ++.++++|+...++      ++++||+
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~------~~~~fD~   97 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDI------VADAWEG   97 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSC------CTTTCSE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCC------CcCCccE
Confidence            4566 99999999998877776654 4999999999999999999876542  48899999887654      4679999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |++.+ .|   .+.++...+++++.++|||||.+++.+++..
T Consensus        98 v~~~~-~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           98 IVSIF-CH---LPSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             EEEEC-CC---CCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             EEEEh-hc---CCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            99854 22   3678899999999999999999999987753

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.62  E-value=2.8e-15  Score=124.17  Aligned_cols=100  Identities=14%  Similarity=0.218  Sum_probs=82.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++..      ++.+.++|   .++      ++++||+
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~------~v~~~~~d---~~~------~~~~~D~   78 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD------SVITLSDP---KEI------PDNSVDF   78 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT------TSEEESSG---GGS------CTTCEEE
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC------CcEEEeCC---CCC------CCCceEE
Confidence            35678999999999988887776654 99999999999999999822      27888888   233      4689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+.    .+...+++++.++|||||++++..+.
T Consensus        79 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           79 ILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             EEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            9999999883    34678999999999999999998544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.62  E-value=4.2e-15  Score=129.56  Aligned_cols=110  Identities=15%  Similarity=0.247  Sum_probs=90.3

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +..+..++.+|||+|||+|..+..++.... +++|+|+|+.+++.|+++...      +.++++|+.+.++       ++
T Consensus        34 l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~------~~~~~~d~~~~~~-------~~   99 (239)
T 3bxo_A           34 VRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRL-------GR   99 (239)
T ss_dssp             HHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCTT------CEEEECCTTTCCC-------SS
T ss_pred             HHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCCC------CEEEECCHHHccc-------CC
Confidence            344446788999999999988887776654 899999999999999988632      7899999877543       47


Q ss_pred             ceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+|.+ ++|| +.+.++...+++++.++|||||.+++..++.
T Consensus       100 ~~D~v~~~~~~~~~-~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          100 KFSAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             CEEEEEECTTGGGG-CCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCcEEEEcCchHhh-cCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            899999765 7887 4567888999999999999999999986554

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.62  E-value=2.3e-15  Score=135.31  Aligned_cols=104  Identities=20%  Similarity=0.187  Sum_probs=89.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++....+.  ++.++++|+...+.       +++||+|+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~fD~i~  189 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QENYDFIV  189 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCCccEEE
Confidence            678999999999988888877654 999999999999999999887653  58999999876543       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..++|+  .+.+....+++++.++|||||++++..
T Consensus       190 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          190 STVVFMF--LNRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             ECSSGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eccchhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999998  456778899999999999999988764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.61  E-value=3.9e-15  Score=131.61  Aligned_cols=107  Identities=17%  Similarity=0.132  Sum_probs=88.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++...  ...++.+.++|+...++      ++++||+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~~------~~~~fD~  107 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAG--VDRKVQVVQADARAIPL------PDESVHG  107 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTT--SCTTEEEEESCTTSCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEcccccCCC------CCCCeeE
Confidence            357789999999999888877765 45999999999999999998722  12348999999987665      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+.    .+...+++++.++|||||.+++..++
T Consensus       108 v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          108 VIVVHLWHLV----PDWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             EEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEECCchhhc----CCHHHHHHHHHHHCCCCcEEEEEecC
Confidence            9999999982    24678999999999999999988443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.61  E-value=3.4e-15  Score=126.40  Aligned_cols=105  Identities=19%  Similarity=0.122  Sum_probs=87.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+++|+|+|+.+++.|+++....+. .++.++++|+...++       +++||+|+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-------~~~~D~v~  102 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANG-YDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-------DRQYDFIL  102 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-------CCCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-------CCCceEEE
Confidence            66899999999998888777664 5999999999999999998876542 138899999876443       47899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..++|+  .+.++...+++++.++|||||.+++..
T Consensus       103 ~~~~l~~--~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          103 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EESCGGG--SCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Ecchhhh--CCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            9999998  445678899999999999999988763

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.61  E-value=1.3e-15  Score=133.76  Aligned_cols=117  Identities=17%  Similarity=-0.010  Sum_probs=88.1

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+.+....++.+|||||||+|..+..+++....+++|||+|+.+++.|+++....+  ..+.++.+|+.....    ..+
T Consensus        52 ~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~----~~~  125 (236)
T 3orh_A           52 ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP----TLP  125 (236)
T ss_dssp             HHHHHHTTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG----GSC
T ss_pred             HHHHhhccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcc----ccc
Confidence            34444456889999999999987777766666789999999999999999887654  347788887643211    115


Q ss_pred             CCceeEEEeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 ANQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 ~~~fD~V~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +++||.|+.--. ..+...+..+...+++++.|+|||||+|++.
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            688999975321 2223455778899999999999999999875

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=1.9e-15  Score=132.68  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=90.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.... +|+|+|+|+.+++.|+++....    ++.++++|+.+.+....+.. ...||+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~d~~~~~~~~~~~~-~~~~d~  127 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAA----NISYRLLDGLVPEQAAQIHS-EIGDAN  127 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCCT----TEEEEECCTTCHHHHHHHHH-HHCSCE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCccc----CceEEECccccccccccccc-ccCccE
Confidence            35778999999999988888877665 8999999999999999987433    38999999988554322211 235999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++|+  .+.++...+++++.++|||||++++..+..
T Consensus       128 v~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          128 IYMRTGFHH--IPVEKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             EEEESSSTT--SCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             EEEcchhhc--CCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            999999998  455678899999999999999988775544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.60  E-value=1.6e-14  Score=121.22  Aligned_cols=111  Identities=15%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++....+... ++.++++|+.+. +      .+++||+
T Consensus        51 ~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~D~  122 (194)
T 1dus_A           51 DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-V------KDRKYNK  122 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-C------TTSCEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-c------ccCCceE
Confidence            37789999999999888877766 6699999999999999999987665332 389999998763 2      3578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      |++...+|+   ..+....+++++.++|+|||.+++..++...
T Consensus       123 v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          123 IITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             EEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             EEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            999887775   3667889999999999999999999888644

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.60  E-value=3.2e-15  Score=128.89  Aligned_cols=105  Identities=23%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++   ..    +.+.++|+.+...  .......+||+|
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~----~~~~~~~~~~~~~--~~~~~~~~fD~v  120 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA---GA----GEVHLASYAQLAE--AKVPVGKDYDLI  120 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT---CS----SCEEECCHHHHHT--TCSCCCCCEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh---cc----cccchhhHHhhcc--cccccCCCccEE
Confidence            36789999999999888777666 44999999999999999988   11    5677777644210  000134569999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|..++|.     .+...+++++.++|||||++++++++.
T Consensus       121 ~~~~~l~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~  155 (227)
T 3e8s_A          121 CANFALLH-----QDIIELLSAMRTLLVPGGALVIQTLHP  155 (227)
T ss_dssp             EEESCCCS-----SCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECchhhh-----hhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence            99998872     235688999999999999999998876

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.60  E-value=1.4e-14  Score=125.94  Aligned_cols=119  Identities=15%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             HHHhcCCCCEEEEECCC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhc
Q 021467           25 IKIYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~  102 (312)
                      +.....++.+|||+||| +|..+..++.....+|+|+|+|+.+++.|+++...++.  +++++++|+... .+      +
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~------~  120 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGV------V  120 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTT------C
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhc------c
Confidence            55566788999999999 99887777665356999999999999999999887664  689999997532 22      3


Q ss_pred             CCceeEEEeccchhhhcC---------------CHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          103 ANQADLVCCFQHLQMCFE---------------TEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~---------------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      +++||+|++...++..-.               ..+....+++++.++|||||++++.+|....
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  184 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK  184 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh
Confidence            588999999876543110               1223478999999999999999998887643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=4.7e-15  Score=126.74  Aligned_cols=108  Identities=14%  Similarity=0.071  Sum_probs=89.7

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..+..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+... ++++++|+...        .+++
T Consensus        55 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--------~~~~  125 (205)
T 3grz_A           55 ERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--------VDGK  125 (205)
T ss_dssp             HHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--------CCSC
T ss_pred             HHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--------CCCC
Confidence            34456789999999999988888777666799999999999999999988765433 88999998652        2478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ||+|++...+|+       ...+++++.++|||||++++..+..
T Consensus       126 fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~~~  162 (205)
T 3grz_A          126 FDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGIDY  162 (205)
T ss_dssp             EEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred             ceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEecCc
Confidence            999999988776       6889999999999999999874433

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.60  E-value=1.6e-14  Score=120.19  Aligned_cols=117  Identities=12%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      ...++... ..++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+...++ ++++|... .+   
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~---   88 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF---   88 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG---
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh---
Confidence            34444444 347789999999999887777665 3579999999999999999998876644357 78888754 33   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                       +...++||+|++..++|+        ..+++++.++|||||++++..+..+.
T Consensus        89 -~~~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           89 -DDVPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             -GGCCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             -hccCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence             112378999999998775        67899999999999999998776643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.59  E-value=7e-15  Score=130.96  Aligned_cols=119  Identities=14%  Similarity=0.036  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      |+...+-..-..++.+|||||||+|..+..++..+ .+|+|+|+|+.|++.|+++.....  ....+...+......   
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~---  106 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKE---  106 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGG---
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccc---
Confidence            44433322234578899999999998887777654 599999999999999999876541  122222222100011   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                         .+++||+|++..++|+  ...++...+++++.++| |||+++++.+..
T Consensus       107 ---~~~~fD~Vv~~~~l~~--~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          107 ---LAGHFDFVLNDRLINR--FTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             ---GTTCCSEEEEESCGGG--SCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             ---cCCCccEEEEhhhhHh--CCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence               2578999999999998  45777889999999999 999999996654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.59  E-value=1e-15  Score=145.20  Aligned_cols=110  Identities=16%  Similarity=0.246  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..+...+. +|+|+|+|+.+++.|+++.        +..... .........++.++++||+|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~--------~~~~~~-~~~~~~~~~l~~~~~~fD~I  175 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKG--------IRVRTD-FFEKATADDVRRTEGPANVI  175 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTT--------CCEECS-CCSHHHHHHHHHHHCCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcC--------CCccee-eechhhHhhcccCCCCEEEE
Confidence            4678999999999988888877655 9999999999999998771        111111 11111111222245899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      ++..++||.    .+...+++++.++|||||++++.+|+...+.
T Consensus       176 ~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~  215 (416)
T 4e2x_A          176 YAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIV  215 (416)
T ss_dssp             EEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHH
T ss_pred             EECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhh
Confidence            999999983    3688999999999999999999999976554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.59  E-value=1.2e-14  Score=129.26  Aligned_cols=126  Identities=19%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             HHHHHHHHhcC---CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           20 AKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        20 vk~~li~~~~~---~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      +.++++..++.   ++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++...++...++.++++|+.+... 
T Consensus        35 ~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~-  113 (259)
T 3lpm_A           35 IDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITD-  113 (259)
T ss_dssp             HHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGG-
T ss_pred             HHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhh-
Confidence            34667777765   67899999999998888777665559999999999999999999877655569999999876431 


Q ss_pred             hhhhhcCCceeEEEeccchhhh----------------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           97 TQMQEKANQADLVCCFQHLQMC----------------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~----------------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                       .+  +.++||+|+++..++..                .+.......+++.+.++|||||++++..+..
T Consensus       114 -~~--~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  179 (259)
T 3lpm_A          114 -LI--PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE  179 (259)
T ss_dssp             -TS--CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             -hh--ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence             01  35899999997554321                1122456789999999999999999987554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.59  E-value=4.2e-14  Score=120.81  Aligned_cols=118  Identities=13%  Similarity=0.034  Sum_probs=93.2

Q ss_pred             HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      +...++... ..++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++.+..+. .+++++++|+.+...  
T Consensus        28 i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~--  104 (204)
T 3e05_A           28 VRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLD--  104 (204)
T ss_dssp             HHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCT--
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhh--
Confidence            334444443 3478899999999998888877764 47999999999999999999876553 348999999865332  


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                          ...+||+|++..+++.       ...+++++.++|||||++++..+..+.
T Consensus       105 ----~~~~~D~i~~~~~~~~-------~~~~l~~~~~~LkpgG~l~~~~~~~~~  147 (204)
T 3e05_A          105 ----DLPDPDRVFIGGSGGM-------LEEIIDAVDRRLKSEGVIVLNAVTLDT  147 (204)
T ss_dssp             ----TSCCCSEEEESCCTTC-------HHHHHHHHHHHCCTTCEEEEEECBHHH
T ss_pred             ----cCCCCCEEEECCCCcC-------HHHHHHHHHHhcCCCeEEEEEeccccc
Confidence                2367999999887664       778999999999999999999777543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.59  E-value=9.8e-16  Score=136.25  Aligned_cols=101  Identities=12%  Similarity=0.055  Sum_probs=85.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++. ...+|+|+|+|+.|++.|+++.       ++.|+++|+.+.++      ++++||+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~------~~~~fD~v   98 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLAL------PDKSVDGV   98 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCS------CTTCBSEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCC------CCCCEeEE
Confidence            4788999999999988777765 4569999999999998877665       38999999987665      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|..++|+.    .+...+++++.++|| ||++++..++.
T Consensus        99 ~~~~~l~~~----~~~~~~l~~~~~~Lk-gG~~~~~~~~~  133 (261)
T 3ege_A           99 ISILAIHHF----SHLEKSFQEMQRIIR-DGTIVLLTFDI  133 (261)
T ss_dssp             EEESCGGGC----SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred             EEcchHhhc----cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence            999999883    457789999999999 99888887664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.58  E-value=4.9e-14  Score=120.93  Aligned_cols=117  Identities=12%  Similarity=0.026  Sum_probs=91.1

Q ss_pred             HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 021467           21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      ...++... ..++.+|||+|||+|..+..++.. ..+|+|+|+|+++++.|+++.+..+...+++++++|+.+...    
T Consensus        44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~----  118 (204)
T 3njr_A           44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA----  118 (204)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT----
T ss_pred             HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc----
Confidence            33344443 357889999999999888887777 669999999999999999998776544358999999876211    


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                        ....||+|++..++.        .. +++++.++|||||++++..++.+.+.
T Consensus       119 --~~~~~D~v~~~~~~~--------~~-~l~~~~~~LkpgG~lv~~~~~~~~~~  161 (204)
T 3njr_A          119 --DLPLPEAVFIGGGGS--------QA-LYDRLWEWLAPGTRIVANAVTLESET  161 (204)
T ss_dssp             --TSCCCSEEEECSCCC--------HH-HHHHHHHHSCTTCEEEEEECSHHHHH
T ss_pred             --cCCCCCEEEECCccc--------HH-HHHHHHHhcCCCcEEEEEecCcccHH
Confidence              235799999877431        44 89999999999999999988875543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=6.9e-15  Score=136.59  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=88.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..+++.+..+|+|+|+| +|++.|+++.+.++...+++++++|+.+.++      ++++||+|
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~I  137 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  137 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC------CCCceEEE
Confidence            3788999999999988888877777799999999 5999999999887765569999999988765      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      ++....+. +........+++.+.++|||||+++
T Consensus       138 is~~~~~~-l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          138 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEcccccc-ccCchhHHHHHHHHHHhCCCCCEEc
Confidence            99764332 3345667889999999999999986

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.57  E-value=6.8e-15  Score=129.89  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=88.7

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++... ..++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++..      ++.++++|+...+       
T Consensus        25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~------~~~~~~~d~~~~~-------   91 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------NTNFGKADLATWK-------   91 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST------TSEEEECCTTTCC-------
T ss_pred             HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC------CcEEEECChhhcC-------
Confidence            44433 346789999999999888777665 35689999999999999998832      2789999987643       


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++++||+|++..++|+.    .+...+++++.++|||||++++++|+.
T Consensus        92 ~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 PAQKADLLYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             CSSCEEEEEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             ccCCcCEEEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence            25789999999999983    347789999999999999999998765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.57  E-value=1.3e-14  Score=121.08  Aligned_cols=111  Identities=12%  Similarity=0.039  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...++.++++|+.+.     ++..+++||+|
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~fD~i  104 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLV  104 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEE
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-----HHhhcCCCCEE
Confidence            3678999999999988888877766799999999999999999998765444589999987541     11134679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~~~  150 (312)
                      ++...++.     ......++.+.  ++|+|||++++.++...
T Consensus       105 ~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          105 FLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             EECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             EECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            99876543     23456666676  99999999999977653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.56  E-value=2.6e-14  Score=132.26  Aligned_cols=107  Identities=15%  Similarity=0.091  Sum_probs=87.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..+++.+..+|+|+|+|+ |++.|+++.+.++...++.++++|+.+.++      ++++||+
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~  134 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDV  134 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEE
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC------CCCcEEE
Confidence            347889999999999877777777666999999996 999999998877654569999999987655      4579999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      |++....+ .+........++.++.++|||||.++
T Consensus       135 Ivs~~~~~-~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          135 IISEWMGY-FLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEECCCBT-TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEcCchh-hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            99876322 23445667889999999999999997

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.56  E-value=5.1e-14  Score=140.95  Aligned_cols=112  Identities=20%  Similarity=0.320  Sum_probs=93.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcC-----CCceEEEEEcCCCCCchhhhhhhcC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQR-----KNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~-----~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++.+|||||||+|..+..++....  .+|+|+|+|+.|++.|++++....     ...+++|+++|+...++      .+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~------~d  794 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS------RL  794 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT------TS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc------cc
Confidence            678999999999988877766542  699999999999999999775321     12369999999988766      56


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      ++||+|+|..++||  ........+++++.++|||| .+++++|+.+.
T Consensus       795 ~sFDlVV~~eVLeH--L~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey  839 (950)
T 3htx_A          795 HDVDIGTCLEVIEH--MEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF  839 (950)
T ss_dssp             CSCCEEEEESCGGG--SCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred             CCeeEEEEeCchhh--CChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence            89999999999998  45666778999999999999 99999999743

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.56  E-value=4.7e-14  Score=118.19  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=89.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....+...++.+.++|+.. .+    + ..++||+
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~----~-~~~~~D~  103 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL----C-KIPDIDI  103 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH----T-TSCCEEE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc----c-cCCCCCE
Confidence            4578899999999998777776656 79999999999999999998776543458888988654 22    1 1258999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |++...+++       ...+++++.++|+|||.+++..++....
T Consensus       104 v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~  140 (192)
T 1l3i_A          104 AVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (192)
T ss_dssp             EEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             EEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcchH
Confidence            999987766       6889999999999999999998876544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.56  E-value=2.4e-14  Score=120.05  Aligned_cols=113  Identities=17%  Similarity=0.064  Sum_probs=86.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...+++++++|+.+..  ..++..+++||+|+
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL--EQFYEEKLQFDLVL  121 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH--HHHHHTTCCEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHH--HHHHhcCCCCCEEE
Confidence            6789999999999888877776667999999999999999999877654445899999975521  11111257899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHH--HhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i--~~~LkpGG~~i~~~p~~~  150 (312)
                      +...++.  ...   ...++.+  .++|+|||++++.++...
T Consensus       122 ~~~~~~~--~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          122 LDPPYAK--QEI---VSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             ECCCGGG--CCH---HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ECCCCCc--hhH---HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            9877553  323   3445555  889999999999987753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.56  E-value=4.9e-14  Score=127.13  Aligned_cols=105  Identities=10%  Similarity=-0.039  Sum_probs=84.5

Q ss_pred             cCCCCEEEEECCCCCccHHHH-HHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKW-ETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~-~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.++.+|||||||+|+.+..+ ++....+|+|+|+|++|++.|+++.+..+. .+++|+++|+.+  +      ++++||
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~--l------~d~~FD  190 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETV--I------DGLEFD  190 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGG--G------GGCCCS
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhh--C------CCCCcC
Confidence            458899999999999765443 344567999999999999999999887665 569999999865  2      347899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|++....       .+...+++++.++|||||++++...+.
T Consensus       191 vV~~~a~~-------~d~~~~l~el~r~LkPGG~Lvv~~~~~  225 (298)
T 3fpf_A          191 VLMVAALA-------EPKRRVFRNIHRYVDTETRIIYRTYTG  225 (298)
T ss_dssp             EEEECTTC-------SCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred             EEEECCCc-------cCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence            99986532       236789999999999999999886543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.55  E-value=4.5e-14  Score=120.98  Aligned_cols=109  Identities=11%  Similarity=0.056  Sum_probs=87.7

Q ss_pred             HHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      ..++... ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++....+.. +++++++|+.....     
T Consensus        67 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~-----  139 (210)
T 3lbf_A           67 ARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQ-----  139 (210)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG-----
T ss_pred             HHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCc-----
Confidence            3344333 347889999999999888777766 569999999999999999998875533 48999999876443     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                       ..++||+|++..++|+..          .++.++|||||++++.+++
T Consensus       140 -~~~~~D~i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 -ARAPFDAIIVTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             -GGCCEEEEEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             -cCCCccEEEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence             357899999999988832          2578999999999999887

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.55  E-value=8.1e-14  Score=120.07  Aligned_cols=117  Identities=15%  Similarity=0.089  Sum_probs=88.8

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +..++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+...+  ..+  ++++|
T Consensus        38 f~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~--~~~--~~~~~  112 (214)
T 1yzh_A           38 FGNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYF--EDGEI  112 (214)
T ss_dssp             HTSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTS--CTTCC
T ss_pred             cCCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhc--CCCCC
Confidence            3346789999999999888877765 356999999999999999999876553 35899999997633  111  35789


Q ss_pred             eEEEeccchhhhcCCH-----HHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          107 DLVCCFQHLQMCFETE-----ERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~-----~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |+|++.+..++. ...     .....+++++.++|+|||.+++.+.+..
T Consensus       113 D~i~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  160 (214)
T 1yzh_A          113 DRLYLNFSDPWP-KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG  160 (214)
T ss_dssp             SEEEEESCCCCC-SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             CEEEEECCCCcc-ccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH
Confidence            999998764320 000     0136789999999999999999887654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.55  E-value=7.8e-15  Score=125.60  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCc-eeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ-ADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~-fD~  108 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+.. .+++++++|+.+...  .+  .+++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK--QP--QNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT--SC--CSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH--hh--ccCCCCCE
Confidence            57899999999998877766666679999999999999999998776532 358999998754211  00  2467 999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHH--HhccCCCcEEEEEecChh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNV--SSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i--~~~LkpGG~~i~~~p~~~  150 (312)
                      |++...+|.     .....+++.+  .++|+|||.+++.+....
T Consensus       129 I~~~~~~~~-----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          129 VFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             EEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             EEECCCCCC-----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            999887442     3456778888  678999999999876653

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.55  E-value=1.6e-13  Score=127.59  Aligned_cols=113  Identities=13%  Similarity=0.075  Sum_probs=92.1

Q ss_pred             HHHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        23 ~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      .++..+ ..++.+|||||||+|..+..++.. +..+++|+|+ +.+++.|+++....+...+++++.+|+.+.++     
T Consensus       181 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  254 (359)
T 1x19_A          181 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-----  254 (359)
T ss_dssp             HHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC-----
Confidence            344444 346789999999999888887765 3459999999 99999999998776544459999999987654     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                       +  .+|+|++..++|+  .+.+....+++++.++|||||++++..
T Consensus       255 -~--~~D~v~~~~vlh~--~~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          255 -P--EADAVLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             -C--CCSEEEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             -C--CCCEEEEechhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             2  2499999999998  456778999999999999999998774

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.54  E-value=1.5e-14  Score=125.63  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++.+|||||||+|..+..++.. +...|+|+|+|+.+++.|+++....+.. ++.++++|+.+. +...+  ++++||
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~-l~~~~--~~~~~d  107 (218)
T 3dxy_A           32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEV-LHKMI--PDNSLR  107 (218)
T ss_dssp             SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHH-HHHHS--CTTCEE
T ss_pred             CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-HHHHc--CCCChh
Confidence            346789999999999888888765 4568999999999999999998765532 389999997552 10001  468999


Q ss_pred             EEEeccchhhhcCCHHHH------HHHHHHHHhccCCCcEEEEEecChhH
Q 021467          108 LVCCFQHLQMCFETEERA------RRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~------~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      .|++.+...+  ......      ..+++.+.++|||||+|++.+.+...
T Consensus       108 ~v~~~~~~p~--~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~  155 (218)
T 3dxy_A          108 MVQLFFPDPW--HKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY  155 (218)
T ss_dssp             EEEEESCCCC--CSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             eEEEeCCCCc--cchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence            9999865432  111111      25899999999999999999877644

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.54  E-value=7.4e-15  Score=123.72  Aligned_cols=105  Identities=10%  Similarity=0.095  Sum_probs=84.1

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++++..+|||||||+|..+..|... +..+|+|+|+|+.|++.|+++....+...++.+  +|.... .      +.++|
T Consensus        46 ~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~------~~~~~  116 (200)
T 3fzg_A           46 NIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-V------YKGTY  116 (200)
T ss_dssp             HSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-H------TTSEE
T ss_pred             hcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-C------CCCCc
Confidence            3467889999999999888887655 445999999999999999999988765545555  554332 1      46889


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++...+|+    .++.+..+..+.+.|+|||+||--
T Consensus       117 DvVLa~k~LHl----L~~~~~al~~v~~~L~pggvfISf  151 (200)
T 3fzg_A          117 DVVFLLKMLPV----LKQQDVNILDFLQLFHTQNFVISF  151 (200)
T ss_dssp             EEEEEETCHHH----HHHTTCCHHHHHHTCEEEEEEEEE
T ss_pred             ChhhHhhHHHh----hhhhHHHHHHHHHHhCCCCEEEEe
Confidence            99999999999    366667777999999999988743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=3.8e-14  Score=122.32  Aligned_cols=107  Identities=11%  Similarity=-0.023  Sum_probs=78.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.+.++.+...   ++.++++|+......  .+ ..++||
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~---~v~~~~~d~~~~~~~--~~-~~~~fD  128 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKY--SG-IVEKVD  128 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGT--TT-TCCCEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC---CeEEEEcCCCCchhh--cc-ccccee
Confidence            357889999999999877776654 34589999999999887766655432   378888888763110  01 137899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|+|....      ..+...+++++.++|||||+|+++++
T Consensus       129 ~V~~~~~~------~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          129 LIYQDIAQ------KNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             EEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeccC------hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99987422      23455679999999999999999853

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.54  E-value=4.7e-14  Score=125.56  Aligned_cols=102  Identities=21%  Similarity=0.342  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++...      +.+..+|+...++      .+++||+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~d~~~~~~------~~~~fD~  151 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ------VTFCVASSHRLPF------SDTSMDA  151 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT------SEEEECCTTSCSB------CTTCEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCC------cEEEEcchhhCCC------CCCceeE
Confidence            57889999999999888888776 356999999999999999887532      6789999877665      5679999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |++.++.+           +++++.++|||||.+++.+|+...+..
T Consensus       152 v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~~~  186 (269)
T 1p91_A          152 IIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHLME  186 (269)
T ss_dssp             EEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             EEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHHHH
Confidence            99877533           388999999999999999998866543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.54  E-value=1.9e-14  Score=135.01  Aligned_cols=107  Identities=16%  Similarity=0.092  Sum_probs=89.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++.+.++...+++++++|+.+..+      + ++||+|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~I  133 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL------P-EKVDVI  133 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC------S-SCEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc------C-CcceEE
Confidence            4788999999999988888877777799999999 9999999999887766669999999977654      3 789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++....| ....+.....+++.+.++|||||+++..
T Consensus       134 v~~~~~~-~l~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          134 ISEWMGY-FLLRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EECCCBT-TBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEcChhh-cccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            9966444 3455566888999999999999999754

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.53  E-value=4.2e-14  Score=130.22  Aligned_cols=106  Identities=17%  Similarity=0.111  Sum_probs=86.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..+++.+..+|+|+|+| .+++.|+++.+.++...+++++++|+.+.++      ++++||+|
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------~~~~~D~I  109 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDII  109 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC------CCCcccEE
Confidence            4678999999999987777777666799999999 6999999998877655569999999987655      45789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      ++....+. +.++.....++.++.++|||||.++
T Consensus       110 vs~~~~~~-l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          110 ISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeCchhh-cccHHHHHHHHHHHHhhcCCCeEEE
Confidence            99754332 3445567789999999999999997

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.53  E-value=1.9e-13  Score=128.32  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++...++.  .++++++|+.+...      .+++||+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~------~~~~fD~Ii  303 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALT------EEARFDIIV  303 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSC------TTCCEEEEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccc------cCCCeEEEE
Confidence            67899999999998888887765 4999999999999999999987653  37899999987544      347999999


Q ss_pred             eccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |+..+|+.- ...+....+++++.++|||||.+++.+....
T Consensus       304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            998877521 2246788999999999999999999876654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.53  E-value=6.3e-14  Score=123.07  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=84.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-----CCCceEEEEEcCCCCCchhhhhhhc
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-----RKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~-----~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ..++.+|||||||+|..+..++.. +...|+|+|+|+.|++.|+++....     ....++.++++|+... +...+  +
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~--~  120 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFF--Y  120 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHC--C
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhC--C
Confidence            446679999999999888887765 4568999999999999999876531     1123489999998752 11111  4


Q ss_pred             CCceeEEEeccchhhhcCCH-HH----HHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          103 ANQADLVCCFQHLQMCFETE-ER----ARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~-~~----~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      +++||.|++.+.-.+. ... ..    ...+++++.++|||||.|++.+.+...
T Consensus       121 ~~~~D~v~~~~~dp~~-k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~  173 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHF-KRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLEL  173 (235)
T ss_dssp             TTCEEEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESCHHH
T ss_pred             CcCeeEEEEeCCCchh-hhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHH
Confidence            6899999887653320 100 01    147999999999999999999887643

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.53  E-value=5.5e-14  Score=126.12  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=81.8

Q ss_pred             CCCEEEEECCCCCcc----HHHHHHc-C----CCeEEEEeCChHHHHHHHHHHHh-----------------------cC
Q 021467           31 PYVTVCDLYCGAGVD----VDKWETA-L----IANYIGIDVATSGIGEARDTWEN-----------------------QR   78 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~----l~~~~~~-~----~~~v~giDis~~~i~~a~~r~~~-----------------------~~   78 (312)
                      +..+|||+|||+|..    +..+... +    ..+|+|+|+|+.||+.|++..-.                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            457999999999963    2223332 2    24899999999999999986310                       00


Q ss_pred             -C------CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           79 -K------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        79 -~------~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                       .      ...+.|.++|+.+.++.     ..++||+|+|..+++|  .+.+..+.++++++++|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~-----~~~~fDlI~crnvliy--f~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN-----VPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC-----CCCCEEEEEECSSGGG--SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCC-----cCCCeeEEEECCchHh--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             0      01489999999875441     1478999999999998  45777899999999999999999874

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=1.9e-13  Score=113.65  Aligned_cols=107  Identities=8%  Similarity=-0.025  Sum_probs=87.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++. +..+++|+|+|+.+++.|+++....+. .+++++++|+.+ .+      ++++||+
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~~------~~~~~D~  103 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-VL------DKLEFNK  103 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-HG------GGCCCSE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-cc------cCCCCcE
Confidence            34678999999999987777766 667999999999999999999877653 248899999765 33      3478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |++..+ +.       ...+++++.++  |||.+++..++.+.+.+
T Consensus       104 i~~~~~-~~-------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~  139 (183)
T 2yxd_A          104 AFIGGT-KN-------IEKIIEILDKK--KINHIVANTIVLENAAK  139 (183)
T ss_dssp             EEECSC-SC-------HHHHHHHHHHT--TCCEEEEEESCHHHHHH
T ss_pred             EEECCc-cc-------HHHHHHHHhhC--CCCEEEEEecccccHHH
Confidence            999886 33       67889999888  99999999988765543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.53  E-value=5.6e-14  Score=121.35  Aligned_cols=117  Identities=14%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .++.++++|+...+  ..+  ++++||
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~--~~~--~~~~~d  110 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLT--DVF--EPGEVK  110 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHH--HHC--CTTSCC
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHH--hhc--CcCCcC
Confidence            346789999999999888887765 456999999999999999999876543 24899999987622  111  357899


Q ss_pred             EEEeccchhhhcC----CHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          108 LVCCFQHLQMCFE----TEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       108 ~V~~~~~lh~~~~----~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      .|++.+...+.-.    .......+++++.++|||||.+++.+.+..
T Consensus       111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~  157 (213)
T 2fca_A          111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG  157 (213)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred             EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            9988765332000    000136789999999999999999987754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.52  E-value=1.2e-13  Score=123.89  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             CCCEEEEECCCC---CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-------hhh
Q 021467           31 PYVTVCDLYCGA---GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-------TQM   99 (312)
Q Consensus        31 ~~~~VLDlGCG~---G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~-------~~~   99 (312)
                      ...+|||||||+   |..+..+... +..+|+|+|+|+.|++.|+++.....   ++.++++|+.+....       ..+
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~---~v~~~~~D~~~~~~~~~~~~~~~~~  153 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDP---NTAVFTADVRDPEYILNHPDVRRMI  153 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCT---TEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCC---CeEEEEeeCCCchhhhccchhhccC
Confidence            347999999999   9654444333 45699999999999999999985432   389999999764311       111


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                        ...+||+|++..++||+ . .++...+++++.++|+|||+|+++....
T Consensus       154 --d~~~~d~v~~~~vlh~~-~-d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          154 --DFSRPAAIMLVGMLHYL-S-PDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             --CTTSCCEEEETTTGGGS-C-TTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             --CCCCCEEEEEechhhhC-C-cHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence              22589999999999983 3 3368889999999999999999985544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.52  E-value=4.7e-14  Score=123.38  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=84.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++|+.+|||+|||+|..+..++..  +.++|+|+|+|++|++.++++.+..+   ++..+.+|+.....   .......+
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~p~~---~~~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARFPEK---YRHLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTCGGG---GTTTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccCccc---cccccceE
Confidence            569999999999999988888765  45699999999999999998876543   38888898876432   12245789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++....|      ++.+.++.++.+.|||||++++..
T Consensus       149 DvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          149 DGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEE
Confidence            9998765433      356789999999999999999874

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.52  E-value=1.7e-13  Score=125.82  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++|+|+| .+++.|+++....+...+++++.+|+.+.++      + ..||+
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~-~~~D~  235 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY------G-NDYDL  235 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC------C-SCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC------C-CCCcE
Confidence            56789999999999888877765 35699999999 9999999998765544459999999987544      2 34999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+  .+.++...+++++.++|+|||++++..+.
T Consensus       236 v~~~~~l~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  273 (335)
T 2r3s_A          236 VLLPNFLHH--FDVATCEQLLRKIKTALAVEGKVIVFDFI  273 (335)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EEEcchhcc--CCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence            999999998  56677889999999999999999887443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.51  E-value=7.8e-14  Score=125.43  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=91.1

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ...+.....++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.+.++...+++++++|+.+...      
T Consensus       116 ~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~------  189 (278)
T 2frn_A          116 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG------  189 (278)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC------
T ss_pred             HHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc------
Confidence            33445557788999999999999988888776658999999999999999999877655558999999987543      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                       +++||+|++....+        ...++.++.++|||||++++....
T Consensus       190 -~~~fD~Vi~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          190 -ENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             -CSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             -cCCccEEEECCchh--------HHHHHHHHHHHCCCCeEEEEEEee
Confidence             57899999865422        356788999999999999987554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.51  E-value=4.6e-14  Score=116.46  Aligned_cols=112  Identities=8%  Similarity=0.028  Sum_probs=82.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+++.+|||+|||+|..+..++..+. .++|+|+|+.+++.|+++....+.  +++++++|+.+..  .......++||+
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~~~~~~~~D~  113 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFL--PEAKAQGERFTV  113 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHH--HHHHHTTCCEEE
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHH--HhhhccCCceEE
Confidence            33678999999999988887777655 599999999999999999877653  5889998875421  111112358999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecChhH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDSST  151 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~~~~  151 (312)
                      |++...+|   ..   ...+++.+.  ++|+|||.+++.++....
T Consensus       114 i~~~~~~~---~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          114 AFMAPPYA---MD---LAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             EEECCCTT---SC---TTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             EEECCCCc---hh---HHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            99987665   11   233444444  999999999999877643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.51  E-value=4.7e-14  Score=120.79  Aligned_cols=108  Identities=8%  Similarity=0.000  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++.+..+. .+++++++|+.+.     ++...++||+|+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~-----~~~~~~~fD~V~  127 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSF-----LAQKGTPHNIVF  127 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHH-----HSSCCCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHH-----HhhcCCCCCEEE
Confidence            5789999999999887776666667999999999999999999877653 3589999987541     111346899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHh--ccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~--~LkpGG~~i~~~p~~  149 (312)
                      +...+|.  .   ....+++.+.+  +|+|||++++.+...
T Consensus       128 ~~~p~~~--~---~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          128 VDPPFRR--G---LLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             ECCSSST--T---THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             ECCCCCC--C---cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            9876542  2   24556677755  699999999886654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=5e-14  Score=125.47  Aligned_cols=130  Identities=17%  Similarity=0.048  Sum_probs=95.0

Q ss_pred             HHHHHHHHhcC--CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCC
Q 021467           20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAE   93 (312)
Q Consensus        20 vk~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~---~~~~~~~~f~~~D~~~~   93 (312)
                      +-++++..++.  ++.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++...   ++...++.++++|+.+.
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~  102 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLR  102 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHH
Confidence            66778887765  56799999999998777776653 46999999999999999999877   55444699999999875


Q ss_pred             chhhh-hhhcCCceeEEEeccchhhhc--------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           94 NFETQ-MQEKANQADLVCCFQHLQMCF--------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        94 ~~~~~-~~~~~~~fD~V~~~~~lh~~~--------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..... -..++++||+|+++..++..-              ........+++.+.++|||||.|++..+..
T Consensus       103 ~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          103 AKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             HHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            21000 000357899999985433210              112236788999999999999999987765

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.51  E-value=1.4e-13  Score=128.30  Aligned_cols=107  Identities=14%  Similarity=0.033  Sum_probs=90.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~--~~~~~~~~~~~f  106 (312)
                      ....+|||||||+|..+..+++. +..+++++|+ +.+++.|+++....+...+++++.+|+.+..  +      + ++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p-~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------P-TGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------C-CCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------C-CCc
Confidence            35689999999999888888765 4569999999 9999999999876554456999999998753  4      3 689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++..++|+  .+.++...+|++++++|||||++++..
T Consensus       250 D~v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          250 DAVWMSQFLDC--FSEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             SEEEEESCSTT--SCHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEEechhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99999999997  567778899999999999999999873

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.51  E-value=7.1e-14  Score=124.03  Aligned_cols=105  Identities=21%  Similarity=0.144  Sum_probs=85.5

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .....++.+|||+|||+|..+..+++.+. +|+|+|+|+.+++.|+++...++..  +++.++|+... +      ++++
T Consensus       115 ~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~------~~~~  184 (254)
T 2nxc_A          115 ARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-L------PFGP  184 (254)
T ss_dssp             HHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-G------GGCC
T ss_pred             HHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-C------cCCC
Confidence            34467889999999999987777766666 9999999999999999998876643  78888876541 2      3478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ||+|+++...|.       ...++.++.++|||||+++++.+
T Consensus       185 fD~Vv~n~~~~~-------~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          185 FDLLVANLYAEL-------HAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             EEEEEEECCHHH-------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEECCcHHH-------HHHHHHHHHHHcCCCCEEEEEee
Confidence            999999876554       67899999999999999998743

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=1.4e-13  Score=119.54  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=83.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....+   ++.++++|+.....      .+++||+
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~------~~~~fD~  137 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------EEKPYDR  137 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------GGCCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccc------cCCCccE
Confidence            3578899999999998888777665 699999999999999999987654   48999999866222      2478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++|+..          .++.++|||||++++.+++.
T Consensus       138 v~~~~~~~~~~----------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPTLL----------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHHcCCCcEEEEEEcCC
Confidence            99999988731          36889999999999997764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=7.7e-14  Score=129.43  Aligned_cols=107  Identities=16%  Similarity=0.084  Sum_probs=85.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..+++.+..+|+|+|+|+ +++.|+++.+.++...+++++++|+.+.++       .++||+|
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-------~~~~D~I  120 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  120 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-------CCceeEE
Confidence            37889999999999888777777667999999996 899999998876654569999999987654       3689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++....++.  ..+.....+.++.++|||||.++...
T Consensus       121 vs~~~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          121 ISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             EECCCBTTB--TTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEeCchhcC--ChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            998765542  22345667788999999999998553

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.50  E-value=1.8e-13  Score=125.86  Aligned_cols=106  Identities=17%  Similarity=0.039  Sum_probs=89.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++|..+|+.+ ++      +. +||+|
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------p~-~~D~v  239 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL------PA-GAGGY  239 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------CC-SCSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC------CC-CCcEE
Confidence            4579999999999888877765 4568999999 99999999998776544569999999973 43      33 89999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++..++|+  .+.++...++++++++|+|||++++..+
T Consensus       240 ~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          240 VLSAVLHD--WDDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEehhhcc--CCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            99999998  5677789999999999999999998743

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.49  E-value=1.2e-13  Score=129.29  Aligned_cols=109  Identities=15%  Similarity=0.047  Sum_probs=83.9

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHH-------hcCC-CceEEEEEcCCCCCchhhh
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWE-------NQRK-NFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~-------~~~~-~~~~~f~~~D~~~~~~~~~   98 (312)
                      -+.++.+|||||||+|..+..++.. +..+++|||+|+.+++.|++..+       ..+. ..+++|+++|+.+.++...
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~  249 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRER  249 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccc
Confidence            3568899999999999888877654 55569999999999999987542       2222 2469999999988665211


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                          -..||+|+++..++     ..+....|+++.+.|||||+|+.+
T Consensus       250 ----~~~aDVVf~Nn~~F-----~pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 ----IANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             ----HHTCSEEEECCTTC-----CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred             ----cCCccEEEEccccc-----CchHHHHHHHHHHcCCCCcEEEEe
Confidence                14699999876542     246777889999999999999977

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=8.1e-13  Score=123.41  Aligned_cols=105  Identities=19%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+..+|||+|||+|..+..+++. +..+++++|+ +.+++.|+++....+...+++|..+|+. .++      +. .||+
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~------p~-~~D~  271 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETI------PD-GADV  271 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCC------CS-SCSE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCC------CC-CceE
Confidence            35689999999999888888766 4558999999 9999999999877654456999999998 333      33 8999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++..++|+  .+.+....++++++++|+|||++++.
T Consensus       272 v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  306 (369)
T 3gwz_A          272 YLIKHVLHD--WDDDDVVRILRRIATAMKPDSRLLVI  306 (369)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             EEhhhhhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998  56777789999999999999999987

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.47  E-value=4.3e-14  Score=122.88  Aligned_cols=97  Identities=18%  Similarity=0.241  Sum_probs=78.5

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~  102 (312)
                      ++.....++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++..      +++++++|+.+ .++      .
T Consensus        41 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~------~  107 (226)
T 3m33_A           41 WLSRLLTPQTRVLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARANAP------HADVYEWNGKGELPA------G  107 (226)
T ss_dssp             HHHHHCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHCT------TSEEEECCSCSSCCT------T
T ss_pred             HHHhcCCCCCeEEEeCCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhCC------CceEEEcchhhccCC------c
Confidence            344455788999999999998888777664 599999999999999998832      27899999853 333      4


Q ss_pred             -CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       103 -~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                       +++||+|++..          +...+++++.++|||||.++
T Consensus       108 ~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          108 LGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEE
T ss_pred             CCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEE
Confidence             67999999873          24567899999999999999

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.47  E-value=3.1e-13  Score=125.12  Aligned_cols=107  Identities=25%  Similarity=0.220  Sum_probs=90.2

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +.+|||||||+|..+..+++. +..+++++|+ +.+++.|+++....+...+++++.+|+.+.+..     ..+.||+|+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~D~v~  253 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF-----EGGAADVVM  253 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG-----TTCCEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc-----CCCCccEEE
Confidence            789999999999888888765 4569999999 889999999987765555699999999875410     135699999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..++|+  .+.++...++++++++|||||++++..
T Consensus       254 ~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          254 LNDCLHY--FDAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Eeccccc--CCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            9999998  567778999999999999999999873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.47  E-value=3.4e-13  Score=126.34  Aligned_cols=119  Identities=17%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++...++..  .+++|+.+|+.+ .+      ++++||
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~------~~~~fD  294 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GV------EPFRFN  294 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TC------CTTCEE
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cC------CCCCee
Confidence            45899999999998888887764 579999999999999999998876532  358899999877 23      457899


Q ss_pred             EEEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          108 LVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       108 ~V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      +|+|+..+|... ........+++++.++|||||.+++...........+
T Consensus       295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l  344 (375)
T 4dcm_A          295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKL  344 (375)
T ss_dssp             EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHH
T ss_pred             EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHH
Confidence            999998887521 1122345789999999999999999876654333333

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.47  E-value=3.4e-13  Score=116.77  Aligned_cols=108  Identities=12%  Similarity=0.059  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      ++.+|||||||+|..+..++..  ...+|+|+|+++.+++.|+++++..+...+++++++|+.+..  ..+..  ..++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l--~~~~~~~~~~~f  135 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI--PQLKKKYDVDTL  135 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG--GGTTTTSCCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH--HHHHHhcCCCce
Confidence            5689999999999888877764  356999999999999999999887665556999999974411  11100  12689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++....++    ......++..+ ++|||||++++.
T Consensus       136 D~V~~d~~~~~----~~~~~~~~~~~-~~LkpgG~lv~~  169 (221)
T 3u81_A          136 DMVFLDHWKDR----YLPDTLLLEKC-GLLRKGTVLLAD  169 (221)
T ss_dssp             SEEEECSCGGG----HHHHHHHHHHT-TCCCTTCEEEES
T ss_pred             EEEEEcCCccc----chHHHHHHHhc-cccCCCeEEEEe
Confidence            99999886665    34455677777 999999999987

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.47  E-value=3.1e-13  Score=116.10  Aligned_cols=86  Identities=19%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..+    ..+++|+|+|+.            +    +.+.++|+...++      ++++||+|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~------------~----~~~~~~d~~~~~~------~~~~fD~v  119 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI----RNPVHCFDLASL------------D----PRVTVCDMAQVPL------EDESVDVA  119 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC----CSCEEEEESSCS------------S----TTEEESCTTSCSC------CTTCEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHh----hccEEEEeCCCC------------C----ceEEEeccccCCC------CCCCEeEE
Confidence            46789999999999766554    258999999987            1    5678999887655      56889999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++..++|+     .+...+++++.++|+|||.++++.
T Consensus       120 ~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~  151 (215)
T 2zfu_A          120 VFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAE  151 (215)
T ss_dssp             EEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEE
Confidence            99998874     246788999999999999999873

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.47  E-value=3.6e-13  Score=118.17  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+.. +++++++|+.+.....   ..+++||+|
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~---~~~~~fD~V  145 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK---DVRESYDIV  145 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT---TTTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc---cccCCccEE
Confidence            6789999999999877777653 5569999999999999999998776532 3899999875432200   014789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|...        .+...+++.+.++|||||++++.
T Consensus       146 ~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          146 TARAV--------ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEECC--------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEecc--------CCHHHHHHHHHHhcCCCCEEEEE
Confidence            98762        12678999999999999999986

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.46  E-value=5.7e-13  Score=124.24  Aligned_cols=107  Identities=19%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++++++|+.+ ++      + ..||+
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  251 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL------P-VTADV  251 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-CCEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC------C-CCCCE
Confidence            46789999999999888877765 3469999999 99999999998776544459999999875 33      2 34999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++..++|+  .+.+....+++++.++|||||++++..+
T Consensus       252 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          252 VLLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999998  4566677999999999999999998755

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.46  E-value=9.4e-13  Score=112.32  Aligned_cols=101  Identities=12%  Similarity=0.007  Sum_probs=82.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+... +.++++|+.+..       +.++||+|
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-------~~~~~D~i  136 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP-------SEPPFDGV  136 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC-------CCSCEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC-------ccCCcCEE
Confidence            4789999999999888887765 45699999999999999999987765332 899999987643       24789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++.. ++.       ...+++++.++|+|||.+++...
T Consensus       137 ~~~~-~~~-------~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          137 ISRA-FAS-------LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ECSC-SSS-------HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEec-cCC-------HHHHHHHHHHhcCCCcEEEEEeC
Confidence            9754 222       57899999999999999998844

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=4.3e-13  Score=115.25  Aligned_cols=104  Identities=13%  Similarity=0.007  Sum_probs=82.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++....  .+|+|+|+|+.+++.|+++....+.. ++.+.++|+.....      ..++|
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~f  147 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGYE------PLAPY  147 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCCG------GGCCE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC------CCCCe
Confidence            34788999999999988877776542  69999999999999999998765422 28899998743221      24789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|++..++|+..          .++.++|||||++++.+++.
T Consensus       148 D~v~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          148 DRIYTTAAGPKIP----------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEEESSBBSSCC----------HHHHHTEEEEEEEEEEESSS
T ss_pred             eEEEECCchHHHH----------HHHHHHcCCCcEEEEEECCC
Confidence            9999999988722          47889999999999998765

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=2.5e-13  Score=118.72  Aligned_cols=104  Identities=10%  Similarity=0.066  Sum_probs=83.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.|+++++..+...+++++++|+.+....    ..+++||+|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~~~~fD~V  146 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN----VNDKVYDMI  146 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH----HTTSCEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh----hccCCccEE
Confidence            6789999999999887777664 35799999999999999999998766544699999998653110    025789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++......       ...+++.+.++|||||++++.
T Consensus       147 ~~~~~~~~-------~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          147 FIDAAKAQ-------SKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             EEETTSSS-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEcCcHHH-------HHHHHHHHHHhcCCCeEEEEe
Confidence            98764433       677899999999999999884

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=117.47  Aligned_cols=108  Identities=12%  Similarity=0.058  Sum_probs=83.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.++.+|||+|||+|..+..++..  +..+|+|+|+|+.|++.+.++.+.+.   ++.++++|+.+...   ++..+++|
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~---~v~~~~~d~~~~~~---~~~~~~~~  148 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT---NIIPVIEDARHPHK---YRMLIAMV  148 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT---TEEEECSCTTCGGG---GGGGCCCE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC---CeEEEEcccCChhh---hcccCCcE
Confidence            347889999999999888887765  34699999999999888877776542   38999999976321   11135789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|++...      ..+....++.++.++|||||++++.++.
T Consensus       149 D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          149 DVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            99998654      2344567789999999999999997543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.46  E-value=3.3e-13  Score=117.67  Aligned_cols=104  Identities=16%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..   .++.++++|+.....  ..... ++||+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~--~~~~~-~~~D~  146 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQE--YANIV-EKVDV  146 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGG--GTTTS-CCEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccc--ccccC-ccEEE
Confidence            46789999999999888877766 4469999999999999999887654   248899999876211  01113 68999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++.      +........+++++.++|||||+++++
T Consensus       147 v~~~------~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          147 IYED------VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEC------CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEe------cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9832      233445678899999999999999987

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.45  E-value=2.2e-13  Score=126.12  Aligned_cols=118  Identities=19%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             HHHHHh-cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        23 ~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      .+++.+ ..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++...++..  ..++.+|+...       
T Consensus       187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~-------  257 (343)
T 2pjd_A          187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSE-------  257 (343)
T ss_dssp             HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTT-------
T ss_pred             HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEcccccc-------
Confidence            344444 2356799999999998888777664 348999999999999999998876532  56788888652       


Q ss_pred             hcCCceeEEEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          101 EKANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                       .+++||+|+|...+|+.. .+.+....+++++.++|||||.+++..++..
T Consensus       258 -~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          258 -VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             -CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             -ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence             247899999999887522 1356678999999999999999999976653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.45  E-value=3.7e-13  Score=116.58  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhhhhhc
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....+.    ..++.++++|+.....      .
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~------~  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA------E  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG------G
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc------c
Confidence            557899999999999888777665 2 25999999999999999998876431    1248899999865433      3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .++||+|++...++.          +++++.++|||||+++++++..
T Consensus       149 ~~~fD~i~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPV----------VPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             GCCEEEEEECSBBSS----------CCHHHHHTEEEEEEEEEEESCT
T ss_pred             CCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEecC
Confidence            478999999987765          2467889999999999987653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.45  E-value=2e-13  Score=119.08  Aligned_cols=122  Identities=24%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCC-hHHHHHH---HHHHHhcCCCceEEEEEcCCCCC
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVA-TSGIGEA---RDTWENQRKNFIAEFFEADPCAE   93 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis-~~~i~~a---~~r~~~~~~~~~~~f~~~D~~~~   93 (312)
                      |....++..+..++.+|||||||+|..+..++.. +..+|+|+|+| +.|++.|   +++....+. .++.+.++|+...
T Consensus        12 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l   90 (225)
T 3p2e_A           12 LSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESL   90 (225)
T ss_dssp             CCHHHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBC
T ss_pred             CCHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHh
Confidence            3344455566678899999999999888877653 55689999999 7777776   666554432 2489999998775


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +..     ..+.+|.|.+.+....... .......++++++++|||||++++.+
T Consensus        91 ~~~-----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           91 PFE-----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             CGG-----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhh-----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            321     1256777766654322000 00112468999999999999999843

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.45  E-value=2.7e-13  Score=119.66  Aligned_cols=114  Identities=16%  Similarity=0.068  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhc---CCCce----------------------
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQ---RKNFI----------------------   82 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~---~~~~~----------------------   82 (312)
                      ++.+|||+|||+|..+..++..   +..+++|+|+|+.+++.|+++....   +...+                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999888777654   3458999999999999999876543   21111                      


Q ss_pred             ---EE-------------EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcC-----CHHHHHHHHHHHHhccCCCcE
Q 021467           83 ---AE-------------FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGY  141 (312)
Q Consensus        83 ---~~-------------f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~-----~~~~~~~~l~~i~~~LkpGG~  141 (312)
                         +.             |.++|+.+........ ...+||+|+|...+++...     ..+....+++++.++|+|||+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence               44             8999987632100000 1248999999877665322     157788999999999999999


Q ss_pred             EEEE
Q 021467          142 FLGI  145 (312)
Q Consensus       142 ~i~~  145 (312)
                      ++++
T Consensus       210 l~~~  213 (250)
T 1o9g_A          210 IAVT  213 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.44  E-value=1.9e-14  Score=126.01  Aligned_cols=102  Identities=21%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++....+...++.++++|+.+..       .+++||+|+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~D~v~  149 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-------SFLKADVVF  149 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-------GGCCCSEEE
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-------ccCCCCEEE
Confidence            68899999999999888887765 6999999999999999999887654346999999986532       347899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG  144 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~  144 (312)
                      +...+|+    .......+.++.++|+|||.+++
T Consensus       150 ~~~~~~~----~~~~~~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          150 LSPPWGG----PDYATAETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             ECCCCSS----GGGGGSSSBCTTTSCSSCHHHHH
T ss_pred             ECCCcCC----cchhhhHHHHHHhhcCCcceeHH
Confidence            9988776    22233467789999999998654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.44  E-value=3.5e-13  Score=116.86  Aligned_cols=108  Identities=12%  Similarity=0.049  Sum_probs=83.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCC------CeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~------~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f~~~D~~~~~~~~~   98 (312)
                      ..++.+|||+|||+|..+..++....      .+|+|+|+++.+++.|+++....+.    ..++.++++|+........
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            45789999999999987777766532      5999999999999999999876531    2248999999876430000


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .  ..++||+|++..++++          +++++.++|||||++++.++.
T Consensus       158 ~--~~~~fD~I~~~~~~~~----------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 K--ELGLFDAIHVGASASE----------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             H--HHCCEEEEEECSBBSS----------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             c--cCCCcCEEEECCchHH----------HHHHHHHhcCCCcEEEEEEcc
Confidence            0  3478999999998776          247788999999999998764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.44  E-value=2.5e-14  Score=122.24  Aligned_cols=115  Identities=15%  Similarity=0.046  Sum_probs=66.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++... ..+++|+|+|+.+++.|+++....+.  +++++++|+.+ .+.. .....++||+
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~-~~~~-~~~~~~~fD~  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIE-WLIE-RAERGRPWHA  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH-HHHH-HHHTTCCBSE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHh-hhhh-hhhccCcccE
Confidence            577899999999998888877763 45999999999999999998876543  47777777655 3210 0001389999


Q ss_pred             EEeccchhhhcC----------------------CHHHHHHHHHHHHhccCCCcE-EEEEecC
Q 021467          109 VCCFQHLQMCFE----------------------TEERARRLLQNVSSLLKPGGY-FLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~----------------------~~~~~~~~l~~i~~~LkpGG~-~i~~~p~  148 (312)
                      |++...++..-.                      ..+....+++++.++|||||+ +++.++.
T Consensus       105 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  167 (215)
T 4dzr_A          105 IVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH  167 (215)
T ss_dssp             EEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred             EEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            999755432100                      011127889999999999999 5555543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.44  E-value=5.1e-13  Score=117.97  Aligned_cols=107  Identities=9%  Similarity=0.032  Sum_probs=83.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+|+.+++.|++++...+...+++++++|+.+..  ..+ ...++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l--~~~-~~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL--ESL-GECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH--HTC-CSCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH--Hhc-CCCCCeEE
Confidence            6789999999999888777765 2 56999999999999999999987665556999999975411  111 01358999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++......       ...+++++.++|||||++++...
T Consensus       140 V~~d~~~~~-------~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          140 IFIDADKPN-------NPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             EEECSCGGG-------HHHHHHHHHHTCCTTCEEEEECC
T ss_pred             EEECCchHH-------HHHHHHHHHHhcCCCeEEEEeCC
Confidence            998764433       56789999999999999998733

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.44  E-value=8.5e-13  Score=114.08  Aligned_cols=108  Identities=12%  Similarity=0.040  Sum_probs=84.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~~fD  107 (312)
                      ++.+|||||||+|..+..++.. + ..+|+|+|+++.+++.|++++...+...+++++++|+.+.  ...+... .++||
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~fD  135 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS--LQQIENEKYEPFD  135 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCCCCS
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHHhcCCCCcC
Confidence            6789999999999888877765 2 4699999999999999999998766555699999997542  1111111 26799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|++....+.       ...+++++.++|||||++++..+
T Consensus       136 ~v~~d~~~~~-------~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          136 FIFIDADKQN-------NPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             EEEECSCGGG-------HHHHHHHHHHTCCTTCEEEEESC
T ss_pred             EEEEcCCcHH-------HHHHHHHHHHhcCCCcEEEEeCC
Confidence            9998776444       67889999999999999998733

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.44  E-value=1.6e-12  Score=116.35  Aligned_cols=111  Identities=13%  Similarity=0.093  Sum_probs=86.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+.. ++.++++|+... +      ++++||+
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~-~------~~~~fD~  179 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSA-L------AGQQFAM  179 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGG-G------TTCCEEE
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhh-c------ccCCccE
Confidence            46789999999999888877754 4569999999999999999998765532 489999998652 2      2578999


Q ss_pred             EEeccchhhhc-----------CC----------HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCF-----------ET----------EERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~-----------~~----------~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++....+..-           +.          ....+.+++++.++|+|||++++..+.
T Consensus       180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            99985433210           11          145688999999999999999998544

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.44  E-value=7.2e-13  Score=121.75  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=86.6

Q ss_pred             CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++++.+|+.+ ++      + .+||+|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~v~~  239 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV------P-SNGDIYLL  239 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC------C-SSCSEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC------C-CCCCEEEE
Confidence            89999999999888887765 4568999999 99999999987654322349999999877 33      3 67999999


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ..++|+  .+.+....+++++.++|+|||++++..
T Consensus       240 ~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          240 SRIIGD--LDEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             ESCGGG--CCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             chhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999998  467777899999999999999999883

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.44  E-value=8.1e-13  Score=122.72  Aligned_cols=117  Identities=17%  Similarity=0.143  Sum_probs=91.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+|+.+++.|+++.+..+.. .+++.++|+.+.+.      +...|
T Consensus       201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~~~------~~~~~  273 (354)
T 3tma_A          201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPR------FFPEV  273 (354)
T ss_dssp             CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGGGG------TCCCC
T ss_pred             CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhCcc------ccCCC
Confidence            357789999999999888877664  3468999999999999999999877654 68999999877544      45679


Q ss_pred             eEEEeccchhhhcCC----HHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~~lh~~~~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|+++...+....+    ......+++.+.++|||||.+++.+++...+
T Consensus       274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~  323 (354)
T 3tma_A          274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL  323 (354)
T ss_dssp             SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH
T ss_pred             CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence            999997654332221    2234789999999999999999999987543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.43  E-value=4.6e-13  Score=115.86  Aligned_cols=106  Identities=17%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc--CCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--ANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~--~~~f  106 (312)
                      ++.+|||+|||+|..+..++..  +..+|+|+|+++.+++.|+++++..+...+++++++|+.+..  ..+...  .++|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~f  141 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTL--AELIHAGQAWQY  141 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH--HHHHTTTCTTCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHH--HHhhhccCCCCc
Confidence            5789999999999888877765  257999999999999999999987765556999999975421  111100  1789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++......       ...+++++.++|||||++++.
T Consensus       142 D~v~~~~~~~~-------~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          142 DLIYIDADKAN-------TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             EEEEECSCGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCHHH-------HHHHHHHHHHhcCCCcEEEEe
Confidence            99997665333       677899999999999999987

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.43  E-value=6.1e-13  Score=114.58  Aligned_cols=111  Identities=13%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHh----cCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~----~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ..++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.+.++.+.    .+ ..++.++++|+.+.++      .+
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~-~~~v~~~~~d~~~l~~------~~   97 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGG-LPNLLYLWATAERLPP------LS   97 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTC-CTTEEEEECCSTTCCS------CC
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcC-CCceEEEecchhhCCC------CC
Confidence            4578899999999998888887763 56999999999999875443322    22 1258999999988665      34


Q ss_pred             CceeEEEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          104 NQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +. |.|.+.+...... .+..+...+++++.++|||||.++++..
T Consensus        98 ~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           98 GV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            55 7666443211100 0122237899999999999999999643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=3.7e-13  Score=125.69  Aligned_cols=104  Identities=16%  Similarity=0.090  Sum_probs=85.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|......++++..+|+|+|.|+ |++.|++..+.++...++.++++|+.+..+       +.+||+|+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-------pe~~Dviv  154 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-------PEQVDAIV  154 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEEE
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-------CccccEEE
Confidence            6889999999999655555566788999999996 889999999888877789999999988765       37899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      +-.. .+++..+..+..++....++|||||.++
T Consensus       155 sE~~-~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          155 SEWM-GYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             CCCC-BTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             eecc-cccccccchhhhHHHHHHhhCCCCceEC
Confidence            8442 2334456668888999999999999986

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.43  E-value=7.1e-13  Score=127.95  Aligned_cols=106  Identities=16%  Similarity=0.080  Sum_probs=85.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++..+..+|+|+|+|+ +++.|+++...++...+++++++|+.+.++       .++||+|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~-------~~~fD~I  228 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-------PEQVDII  228 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-------SSCEEEE
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc-------CCCeEEE
Confidence            36789999999999877777776667999999998 999999998877655569999999987544       3689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++...+++. .. +.....+.++.++|||||+++..
T Consensus       229 vs~~~~~~~-~~-e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          229 ISEPMGYML-FN-ERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             ECCCCHHHH-TC-HHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEeCchHhc-Cc-HHHHHHHHHHHHhcCCCCEEEEE
Confidence            998765552 22 34556677899999999999854

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.43  E-value=1.9e-13  Score=118.79  Aligned_cols=103  Identities=14%  Similarity=0.055  Sum_probs=82.1

Q ss_pred             CCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.+|||||||+|..+..++..  +..+|+++|+|+++++.|+++++..+.. .+++++++|+.+...  .+  .+++||+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~--~~--~~~~fD~  132 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS--RL--ANDSYQL  132 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG--GS--CTTCEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH--Hh--cCCCcCe
Confidence            349999999999877777664  3579999999999999999999887655 569999998754211  11  2578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++....+.       ...+++.+.++|||||++++.
T Consensus       133 V~~d~~~~~-------~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          133 VFGQVSPMD-------LKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             EEECCCTTT-------HHHHHHHHHHHEEEEEEEEET
T ss_pred             EEEcCcHHH-------HHHHHHHHHHHcCCCcEEEEe
Confidence            998765443       567899999999999999985

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.43  E-value=1.3e-12  Score=122.88  Aligned_cols=124  Identities=11%  Similarity=0.039  Sum_probs=92.9

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ++..++.++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.+.++... +++|+++|+.+.  ...+...
T Consensus       205 ~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~--l~~~~~~  282 (385)
T 2b78_A          205 ELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY--FKYARRH  282 (385)
T ss_dssp             HHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH--HHHHHHT
T ss_pred             HHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH--HHHHHHh
Confidence            3344435678999999999988888877666699999999999999999998776543 589999998652  1111112


Q ss_pred             CCceeEEEeccch-----hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~l-----h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+||+|++....     +...........+++.+.++|+|||++++++...
T Consensus       283 ~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          283 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            4689999985432     2223445667788999999999999999886555

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.42  E-value=1.3e-12  Score=121.24  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++.. +..+++++|+ +.+++.|+++....+...+++++.+|+.+ ++      + ..||+
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~-~~~D~  252 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL------P-RKADA  252 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC------S-SCEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC------C-CCccE
Confidence            36789999999999888877765 3458999999 99999999998776544459999999875 33      2 34999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |++..++|+  .+.++...+++++.++|||||++++..+.
T Consensus       253 v~~~~vl~~--~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          253 IILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEcccccC--CCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999999998  45666789999999999999999988544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.41  E-value=1.1e-12  Score=120.79  Aligned_cols=117  Identities=15%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++..+. +|+|+|+|+.+++.|+++.+.++... +++++++|+.+...  .......+||+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~--~~~~~~~~fD~  228 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ--REERRGSTYDI  228 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH--HHHHHTCCBSE
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH--HHHhcCCCceE
Confidence            4678999999999998888877666 99999999999999999988766433 48999999755211  11112468999


Q ss_pred             EEeccch-hh-----hcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHL-QM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~l-h~-----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++.... ..     .+........+++.+.++|+|||+++++..+.
T Consensus       229 Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          229 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            9995331 10     11225667899999999999999988775443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.41  E-value=7.4e-13  Score=115.42  Aligned_cols=106  Identities=15%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|++++...+...++.++++|+.....  ... .+++||+|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~-~~~~fD~I  130 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGE--KLE-LYPLFDVL  130 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHH--HHT-TSCCEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHH--hcc-cCCCccEE
Confidence            6789999999999888777765 3569999999999999999998876544458999998765311  010 14789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++....+.       ...+++++.++|+|||++++..
T Consensus       131 ~~~~~~~~-------~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          131 FIDAAKGQ-------YRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             EEEGGGSC-------HHHHHHHHGGGEEEEEEEEEET
T ss_pred             EECCCHHH-------HHHHHHHHHHHcCCCeEEEEEc
Confidence            99876553       6788999999999999999873

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.41  E-value=1.9e-12  Score=114.16  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=88.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+++++.|+++.+..+...+++++++|+.+. +      ++++|
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  163 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I------EEENV  163 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C------CCCSE
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c------CCCCc
Confidence            357889999999999888887766 3 5799999999999999999988766544589999998753 3      45789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|++...         +...+++++.++|+|||++++..|..+..
T Consensus       164 D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  200 (255)
T 3mb5_A          164 DHVILDLP---------QPERVVEHAAKALKPGGFFVAYTPCSNQV  200 (255)
T ss_dssp             EEEEECSS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCC---------CHHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence            99998542         13567999999999999999998887554

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.41  E-value=1.2e-12  Score=119.78  Aligned_cols=104  Identities=12%  Similarity=0.018  Sum_probs=83.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++...  ..+|+|+|+|+++++.|+++....+.. ++.+.++|+.+...      ..++|
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~~~~~------~~~~f  145 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGVP------EFSPY  145 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCG------GGCCE
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChhhccc------cCCCe
Confidence            4578999999999998877776653  247999999999999999998776532 28999999866433      34789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|++..++|+..          +++.++|||||++++.+...
T Consensus       146 D~Iv~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          146 DVIFVTVGVDEVP----------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             EEEEECSBBSCCC----------HHHHHHEEEEEEEEEEBCBG
T ss_pred             EEEEEcCCHHHHH----------HHHHHhcCCCcEEEEEECCC
Confidence            9999999888732          56788999999999986543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=1.7e-12  Score=114.33  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+.+++.|+++.+.. + ..++.+.++|+.+.++      ++++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~------~~~~  166 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAEL------EEAA  166 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCC------CTTC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCC------CCCC
Confidence            457889999999999888877766 3 569999999999999999998765 4 2358999999876544      4578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW  153 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~  153 (312)
                      ||+|++...         +...+++++.++|+|||++++..|+.+.+.
T Consensus       167 ~D~v~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  205 (258)
T 2pwy_A          167 YDGVALDLM---------EPWKVLEKAALALKPDRFLVAYLPNITQVL  205 (258)
T ss_dssp             EEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred             cCEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            999997431         234789999999999999999999875543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.41  E-value=6.9e-13  Score=118.80  Aligned_cols=106  Identities=14%  Similarity=0.066  Sum_probs=86.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .++.+|||+|||+|..+..++..  +..+|+|+|+++.+++.|+++.... + ..+++++++|+.+ .+      ++++|
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~-~~------~~~~f  180 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-IGNVRTSRSDIAD-FI------SDQMY  180 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-CTTEEEECSCTTT-CC------CSCCE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECchhc-cC------cCCCc
Confidence            47789999999999888877765  3569999999999999999998765 4 2348999999876 33      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|++..         .+...+++++.++|||||++++.+++....
T Consensus       181 D~Vi~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  217 (275)
T 1yb2_A          181 DAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQS  217 (275)
T ss_dssp             EEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHH
T ss_pred             cEEEEcC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            9999832         124578999999999999999999987543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.40  E-value=1.5e-12  Score=114.63  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=82.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhc--------CCCceEEEEEcCCCCCchhhhhhh
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQ--------RKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~--------~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++.+|||||||+|..+..++... ..+|+|+|+|+.+++.|+++....        +. .++.++++|+.+. +...+  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~-l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKF-LPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSC-GGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHH-HHHhc--
Confidence            67899999999999888887764 458999999999999999887653        22 2489999998762 11111  


Q ss_pred             cCCceeEEEeccchhhhcCCHHH-----HHHHHHHHHhccCCCcEEEEEecCh
Q 021467          102 KANQADLVCCFQHLQMCFETEER-----ARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~-----~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+++|.|++.+.-.+ +.....     ...+++++.++|+|||.+++.+...
T Consensus       125 ~~~~~d~v~~~~p~p~-~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~  176 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPH-FKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK  176 (246)
T ss_dssp             CTTCEEEEEEESCCCC-------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             cccccCEEEEECCCcc-cccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence            3578999986653111 000000     1478999999999999999977664

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.40  E-value=7.6e-13  Score=117.13  Aligned_cols=104  Identities=13%  Similarity=-0.001  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||||||+|.....++.. +..+|+|+|+|+.+++.|+++....+.. +++++++|+.+.....   ...++||+|
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~---~~~~~fD~I  155 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREA---GHREAYARA  155 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTST---TTTTCEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhccc---ccCCCceEE
Confidence            5789999999999877777665 5679999999999999999998876543 3899999975432200   024789999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++....        +...+++.+.++|||||++++..
T Consensus       156 ~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          156 VARAVA--------PLCVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEESSC--------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EECCcC--------CHHHHHHHHHHHcCCCeEEEEEe
Confidence            986532        14678999999999999999764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.40  E-value=1.3e-12  Score=114.04  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=82.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.....+|+|+|+++.+++.|+++....+.. ++.+..+|+.. .+.     ...+||+
T Consensus        89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~-----~~~~fD~  161 (235)
T 1jg1_A           89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSK-GFP-----PKAPYDV  161 (235)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG-CCG-----GGCCEEE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCccc-CCC-----CCCCccE
Confidence            4577899999999998887777653369999999999999999998765432 28899999722 221     2346999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++..++++..          .++.+.|+|||++++.+++.
T Consensus       162 Ii~~~~~~~~~----------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          162 IIVTAGAPKIP----------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             EEECSBBSSCC----------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHHHH----------HHHHHhcCCCcEEEEEEecC
Confidence            99999888721          36789999999999998875

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.40  E-value=2.1e-12  Score=112.03  Aligned_cols=106  Identities=17%  Similarity=0.103  Sum_probs=81.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.|++.++++.+..   .++.++++|+.......   ...++|
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~---~~~~~~  144 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYR---ALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGT---TTCCCE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhh---cccCCc
Confidence            347889999999999888777755 2 369999999999999999887654   24899999987632111   023589


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++...      .......++.++.++|||||++++..
T Consensus       145 D~v~~~~~------~~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          145 DVIFEDVA------QPTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCC------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEECCC------CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99998764      22334566999999999999999873

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.39  E-value=3.2e-12  Score=111.94  Aligned_cols=109  Identities=11%  Similarity=0.055  Sum_probs=87.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.. ..+++|+|+|+.+++.|+++....+...++.+..+|+.+..+      .+++||+|
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~v  162 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV------PEGIFHAA  162 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC------CTTCBSEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc------CCCcccEE
Confidence            47889999999999888877776 669999999999999999998765543458899999876432      24689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      ++...         +...+++++.++|+|||.+++..|+.+.+.+
T Consensus       163 ~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  198 (248)
T 2yvl_A          163 FVDVR---------EPWHYLEKVHKSLMEGAPVGFLLPTANQVIK  198 (248)
T ss_dssp             EECSS---------CGGGGHHHHHHHBCTTCEEEEEESSHHHHHH
T ss_pred             EECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            97432         2456789999999999999999998755443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.39  E-value=2.9e-12  Score=121.65  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHH-------HHHHHhcCCC-ceEEEEEcCCCCCchhhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEA-------RDTWENQRKN-FIAEFFEADPCAENFETQM   99 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a-------~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~   99 (312)
                      ..++.+|||||||+|..+..++.. +..+|+|+|+++.+++.|       +++....+.. .+++++++|.......  +
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~--~  317 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR--V  317 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH--H
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc--c
Confidence            457889999999999888877764 556899999999999988       7777655422 3588988875532210  1


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ....++||+|++...++     ..+....|+++.++|||||.+++.
T Consensus       318 ~~~~~~FDvIvvn~~l~-----~~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          318 AELIPQCDVILVNNFLF-----DEDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHGGGCSEEEECCTTC-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccCCCCEEEEeCccc-----cccHHHHHHHHHHhCCCCeEEEEe
Confidence            00236899999876442     145677899999999999999986

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.39  E-value=1.8e-12  Score=115.89  Aligned_cols=112  Identities=15%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc-C-CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ-R-KNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~-~-~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      ..++.+|||+|||+|..+..++..  +..+++|+|+++.+++.|+++.... + ...++.++++|+.+..+      +++
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~------~~~  170 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PDG  170 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CTT
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC------CCC
Confidence            457889999999999888877764  3569999999999999999998765 2 22348899999877544      457


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      +||+|++...         +...+++++.++|+|||++++.+|+.+.+.+.
T Consensus       171 ~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~  212 (280)
T 1i9g_A          171 SVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLSRI  212 (280)
T ss_dssp             CEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHH
T ss_pred             ceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHH
Confidence            8999998432         13467999999999999999999998665443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.39  E-value=2.9e-12  Score=112.11  Aligned_cols=107  Identities=13%  Similarity=0.032  Sum_probs=77.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.++.+|||+|||+|+.+..++..  +.++|+|+|+|+.|++...+..+..   .++.++++|+........   ..++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~---~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKS---VVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTT---TCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhc---cccce
Confidence            458899999999999888777654  3569999999999976555444332   138899999876432111   24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+|++..+.      ..+.+.++.++.+.|||||+|++++.
T Consensus       148 D~I~~d~a~------~~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          148 DVLYVDIAQ------PDQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             EEEEECCCC------TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEecCCC------hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            999988643      23345556777779999999999843

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.39  E-value=7e-13  Score=113.73  Aligned_cols=102  Identities=14%  Similarity=0.081  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++++..+...+++++++|+.+.     ++..++ ||+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~-fD~  129 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-----AAGQRD-IDI  129 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-----HTTCCS-EEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-----hccCCC-CCE
Confidence            5679999999999887777655 2 5699999999999999999987665444589999987541     111235 999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++......       ...+++++.++|||||++++.
T Consensus       130 v~~~~~~~~-------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          130 LFMDCDVFN-------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEETTTSC-------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEcCChhh-------hHHHHHHHHHhcCCCeEEEEE
Confidence            998754322       678899999999999999985

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.38  E-value=3.5e-12  Score=111.11  Aligned_cols=114  Identities=10%  Similarity=-0.099  Sum_probs=90.3

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+..+++++.+|||+|||+|.....++..+ ..+|+|+|+++.+++.|+++.+.++...++++.++|..+...      +
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~------~   87 (230)
T 3lec_A           14 KVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE------E   87 (230)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred             HHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc------c
Confidence            356778889999999999998777777764 458999999999999999999888766679999999866332      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+||+|++...      .-+-...++....+.|+++|+|++.....
T Consensus        88 ~~~~D~IviaGm------Gg~lI~~IL~~~~~~l~~~~~lIlqp~~~  128 (230)
T 3lec_A           88 ADNIDTITICGM------GGRLIADILNNDIDKLQHVKTLVLQPNNR  128 (230)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSC
T ss_pred             ccccCEEEEeCC------chHHHHHHHHHHHHHhCcCCEEEEECCCC
Confidence            247998875442      12347788999999999999999885444

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.38  E-value=2.4e-13  Score=119.79  Aligned_cols=106  Identities=12%  Similarity=0.029  Sum_probs=83.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      +..+|||||||+|..+..++..  ...+|+|+|+++++++.|+++++..+...+++++++|+.+..  ..+..  ..++|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l--~~~~~~~~~~~f  137 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL--HSLLNEGGEHQF  137 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH--HHHHHHHCSSCE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH--HHHhhccCCCCE
Confidence            5679999999999888877764  256999999999999999999987765556999999975421  11100  14789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++......       ...+++++.++|||||++++.
T Consensus       138 D~V~~d~~~~~-------~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          138 DFIFIDADKTN-------YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             EEEEEESCGGG-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEcCChHH-------hHHHHHHHHHhcCCCeEEEEE
Confidence            99998765333       567899999999999999986

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.38  E-value=1.2e-12  Score=113.70  Aligned_cols=104  Identities=11%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C------CCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCCCCCchhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADPCAENFET   97 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~------~~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f~~~D~~~~~~~~   97 (312)
                      ..++.+|||+|||+|..+..++.. +      ..+|+|+|+++.+++.|+++....+.    ..++.+.++|+.. .+. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~-  159 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYP-  159 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCG-
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCC-
Confidence            457889999999999887777664 3      24899999999999999998764320    1138899999866 221 


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                          ..++||+|++..++++.          ++++.++|||||++++.+..
T Consensus       160 ----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          160 ----PNAPYNAIHVGAAAPDT----------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ----GGCSEEEEEECSCBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             ----cCCCccEEEECCchHHH----------HHHHHHHhcCCCEEEEEEec
Confidence                23789999999988762          36789999999999998764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.38  E-value=1.3e-12  Score=121.90  Aligned_cols=107  Identities=14%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             HHHHhcCCCCEEEEECCC------CCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           24 LIKIYSHPYVTVCDLYCG------AGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG------~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      ++..+..+..+|||||||      +|+.+..++..  +..+|+|+|+|+.|.      ..    ..+++|+++|+.+.++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~~----~~rI~fv~GDa~dlpf  278 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------VD----ELRIRTIQGDQNDAEF  278 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------GC----BTTEEEEECCTTCHHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------hc----CCCcEEEEecccccch
Confidence            445555677899999999      66655555543  456999999999983      11    1249999999988666


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ...+...+++||+|+|.. .|+    ..+...+|+++.++|||||+|++.
T Consensus       279 ~~~l~~~d~sFDlVisdg-sH~----~~d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDG-SHI----NAHVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHCCEEEEEECS-CCC----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhcccCCccEEEECC-ccc----chhHHHHHHHHHHhcCCCeEEEEE
Confidence            322222258999999875 455    466789999999999999999987

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.37  E-value=2.1e-12  Score=109.62  Aligned_cols=109  Identities=11%  Similarity=0.095  Sum_probs=76.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-----------
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-----------   94 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~-----------   94 (312)
                      +.++.+|||+|||+|..+..++.. +  ..+|+|+|+|+.+        ..    ..+.++++|+.+..           
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~~----~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------PI----PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------CC----TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------CC----CCceEEEccccchhhhhhccccccc
Confidence            467889999999999888877765 3  4699999999831        01    12788999987754           


Q ss_pred             ------hhhhhh--hcCCceeEEEeccchhhhcCC-HH------HHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           95 ------FETQMQ--EKANQADLVCCFQHLQMCFET-EE------RARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        95 ------~~~~~~--~~~~~fD~V~~~~~lh~~~~~-~~------~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                            ....+.  .++.+||+|++..++|+.-.+ .+      ....+++++.++|||||.|++.+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG  157 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence                  000000  135789999998877652111 11      12358999999999999999876554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.37  E-value=2.7e-12  Score=115.77  Aligned_cols=111  Identities=15%  Similarity=0.061  Sum_probs=84.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce---e
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA---D  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f---D  107 (312)
                      ++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++....+...+++|+++|+.+. +       .++|   |
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~-------~~~f~~~D  194 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F-------KEKFASIE  194 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G-------GGGTTTCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c-------ccccCCCC
Confidence            567999999999988887776655699999999999999999998776544599999998762 2       1468   9


Q ss_pred             EEEeccchhhh---------cCCHH------HHHHHHHHHH-hccCCCcEEEEEecCh
Q 021467          108 LVCCFQHLQMC---------FETEE------RARRLLQNVS-SLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~lh~~---------~~~~~------~~~~~l~~i~-~~LkpGG~~i~~~p~~  149 (312)
                      +|+++......         ++...      +-..+++++. +.|+|||.+++.+...
T Consensus       195 ~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          195 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             EEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            99997322110         01111      1127899999 9999999999987654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.37  E-value=5.7e-12  Score=116.03  Aligned_cols=113  Identities=18%  Similarity=0.066  Sum_probs=85.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CC-CeEEEEeCChHHHHHHHHHHHhcC----------CCceEEEEEcCCCCC--c
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LI-ANYIGIDVATSGIGEARDTWENQR----------KNFIAEFFEADPCAE--N   94 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~-~~v~giDis~~~i~~a~~r~~~~~----------~~~~~~f~~~D~~~~--~   94 (312)
                      ..++.+|||+|||+|..+..++.. +. .+|+|+|+++.+++.|+++....+          ...+++++++|+.+.  +
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  182 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence            457899999999999888877765 33 699999999999999999887421          113489999999775  2


Q ss_pred             hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      +      ++++||+|++...-..         .++.++.++|||||.+++..++...+...+
T Consensus       183 ~------~~~~fD~V~~~~~~~~---------~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~  229 (336)
T 2b25_A          183 I------KSLTFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVVNITQVIELL  229 (336)
T ss_dssp             -----------EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEESSHHHHHHHH
T ss_pred             c------CCCCeeEEEECCCCHH---------HHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence            2      3468999998653222         378999999999999999999886655443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.37  E-value=4.4e-12  Score=111.43  Aligned_cols=122  Identities=9%  Similarity=-0.078  Sum_probs=93.4

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+..+++++.+|||||||+|.....++..+ ..+|+|+|+++.+++.|+++.+.++...++++.++|..+...      +
T Consensus        14 ~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~------~   87 (244)
T 3gnl_A           14 KVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE------K   87 (244)
T ss_dssp             HHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC------G
T ss_pred             HHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC------c
Confidence            456788899999999999998777777664 458999999999999999999888766679999999766332      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh-hHHHHHHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKYQ  157 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~-~~l~~~~~  157 (312)
                      ..+||+|++...      ..+-...++....+.|+++|+|++..... +.+.+.+.
T Consensus        88 ~~~~D~Iviagm------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~  137 (244)
T 3gnl_A           88 KDAIDTIVIAGM------GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSE  137 (244)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHH
T ss_pred             cccccEEEEeCC------chHHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHH
Confidence            236998876442      12446778999999999999999885444 44444443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.37  E-value=1.3e-12  Score=114.40  Aligned_cols=107  Identities=15%  Similarity=0.131  Sum_probs=83.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-------
Q 021467           31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-------  101 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-------  101 (312)
                      ++.+|||+|||+|..+..++...  ..+|+|+|+++.+++.|++++...+...++.++++|+... + ..+..       
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~-~-~~~~~~~~~~~~  137 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET-L-QVLIDSKSAPSW  137 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-H-HHHHHCSSCCGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH-H-HHHHhhcccccc
Confidence            67899999999998888777652  5699999999999999999987765544589999987541 1 11110       


Q ss_pred             ----c-C-CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          102 ----K-A-NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       102 ----~-~-~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                          + + ++||+|++......       ...+++++.++|+|||++++..
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~~~-------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADKEN-------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCGGG-------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cccccCCCCCcCEEEEeCCHHH-------HHHHHHHHHHHcCCCeEEEEEc
Confidence                1 2 78999998875544       5688999999999999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=7.2e-12  Score=106.44  Aligned_cols=101  Identities=12%  Similarity=-0.005  Sum_probs=75.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++..      +++++++|+.+.         +++||+|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~---------~~~~D~v  114 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYDTW  114 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEEEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC---------CCCeeEE
Confidence            3678999999999988887777666689999999999999999875      278999998652         2689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++...+|+.  .......+++.+.+.|  |+.+++..+..
T Consensus       115 ~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          115 IMNPPFGSV--VKHSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             EECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             EECCCchhc--cCchhHHHHHHHHHhc--CcEEEEEcCch
Confidence            999988872  2233457889999988  56555544443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.37  E-value=2.2e-12  Score=106.24  Aligned_cols=110  Identities=18%  Similarity=0.086  Sum_probs=80.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      ..++.+|||+|||+|..+..++.. + ..+++|+|+|+ +++.           .++.++++|+.+.+....+.  .+++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            457889999999999888877766 3 36999999999 6532           12889999998754111111  1457


Q ss_pred             ceeEEEeccchhhhcCC-HHH------HHHHHHHHHhccCCCcEEEEEecChh
Q 021467          105 QADLVCCFQHLQMCFET-EER------ARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~-~~~------~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +||+|++...+|+.-.. .+.      ...+++++.++|+|||.++++++...
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            89999998877652111 111      26889999999999999999876653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.37  E-value=5.3e-12  Score=109.76  Aligned_cols=121  Identities=12%  Similarity=0.002  Sum_probs=91.9

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .+..+++++.+|||+|||+|.....++..+ ..+|+|+|+++.+++.|+++.+.++...++++..+|..+. +    + +
T Consensus         8 ~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l----~-~   81 (225)
T 3kr9_A            8 LVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F----E-E   81 (225)
T ss_dssp             HHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C----C-G
T ss_pred             HHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c----c-c
Confidence            345678889999999999998877777764 4689999999999999999999887666799999997542 1    0 1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh-hHHHHHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS-STIWAKY  156 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~-~~l~~~~  156 (312)
                      ..+||+|++...      .-+....++......|+++|+|++..... +.+.+.+
T Consensus        82 ~~~~D~IviaG~------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L  130 (225)
T 3kr9_A           82 TDQVSVITIAGM------GGRLIARILEEGLGKLANVERLILQPNNREDDLRIWL  130 (225)
T ss_dssp             GGCCCEEEEEEE------CHHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH
T ss_pred             CcCCCEEEEcCC------ChHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence            126998876542      12336788999999999999999874443 3343333

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.36  E-value=2.5e-12  Score=106.91  Aligned_cols=100  Identities=12%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++...  +++|+|+|+.|++.      ..    +++++++|+.+ ++      .+++||+|
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~------~~----~~~~~~~d~~~-~~------~~~~fD~i   82 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES------HR----GGNLVRADLLC-SI------NQESVDVV   82 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT------CS----SSCEEECSTTT-TB------CGGGCSEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc------cc----CCeEEECChhh-hc------ccCCCCEE
Confidence            467799999999997777776555  99999999999987      22    27899999877 33      34789999


Q ss_pred             EeccchhhhcCC-----HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFET-----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~-----~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +++..+|..-..     ..+...+++++.+.| |||.+++..+..
T Consensus        83 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~  126 (170)
T 3q87_B           83 VFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA  126 (170)
T ss_dssp             EECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG
T ss_pred             EECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC
Confidence            999887742110     112345778888888 999999986544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.36  E-value=2.3e-12  Score=117.36  Aligned_cols=114  Identities=14%  Similarity=0.047  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHh---cCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN---QRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~---~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +++.+|||||||+|..+..+++. +..+++++|+|+.+++.|++++..   .....+++++++|+.....    ...+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~----~~~~~~  169 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR----QTPDNT  169 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----SSCTTC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH----hccCCc
Confidence            46689999999999888888765 456999999999999999998742   1112348899998754221    002578


Q ss_pred             eeEEEeccchhhhcCCHHHH--HHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~--~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ||+|++....+.  .....+  ..+++++.++|||||++++...+.
T Consensus       170 fDvIi~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~  213 (304)
T 3bwc_A          170 YDVVIIDTTDPA--GPASKLFGEAFYKDVLRILKPDGICCNQGESI  213 (304)
T ss_dssp             EEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred             eeEEEECCCCcc--ccchhhhHHHHHHHHHHhcCCCcEEEEecCCc
Confidence            999999765543  111222  688999999999999999986653

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.35  E-value=4.7e-12  Score=113.92  Aligned_cols=112  Identities=15%  Similarity=0.026  Sum_probs=81.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeC-ChHHHHHHHHHHH-----hcCCC----ceEEEEEcCCCCCchhhhh
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDV-ATSGIGEARDTWE-----NQRKN----FIAEFFEADPCAENFETQM   99 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDi-s~~~i~~a~~r~~-----~~~~~----~~~~f~~~D~~~~~~~~~~   99 (312)
                      .++.+|||||||+|..+..++..+..+|+|+|+ |+.+++.|+++..     .++..    .++.+...|..+..- ...
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~  156 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPD-SLQ  156 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTH-HHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccH-HHH
Confidence            367899999999998777776666569999999 8999999999983     33211    246677666544211 111


Q ss_pred             hh-cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccC---C--CcEEEEEe
Q 021467          100 QE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLK---P--GGYFLGIT  146 (312)
Q Consensus       100 ~~-~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lk---p--GG~~i~~~  146 (312)
                      .. .+++||+|++..++++    ......+++.+.++|+   |  ||.+++..
T Consensus       157 ~~~~~~~fD~Ii~~dvl~~----~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          157 RCTGLQRFQVVLLADLLSF----HQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHSCSSBSEEEEESCCSC----GGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             hhccCCCCCEEEEeCcccC----hHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            00 2478999999887665    4557889999999999   9  99987763

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.35  E-value=4.4e-12  Score=118.72  Aligned_cols=129  Identities=14%  Similarity=0.076  Sum_probs=94.6

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      +...++.....++.+|||+|||+|..+..++.... .+++|+|+|+.|++.|+++....+....+++.++|+.+.+.   
T Consensus       206 la~~l~~~~~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~---  282 (373)
T 3tm4_A          206 IANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ---  282 (373)
T ss_dssp             HHHHHHHHHTCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG---
T ss_pred             HHHHHHHhhcCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc---
Confidence            33333433356788999999999988887776543 38999999999999999999877654568999999877554   


Q ss_pred             hhhcCCceeEEEeccchhhhcC---CHHH-HHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467           99 MQEKANQADLVCCFQHLQMCFE---TEER-ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~---~~~~-~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                         ++++||+|+++..++....   .... ...+++.+.++|  ||.+++.+++...+.+.+
T Consensus       283 ---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~  339 (373)
T 3tm4_A          283 ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAI  339 (373)
T ss_dssp             ---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHH
T ss_pred             ---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHH
Confidence               4578999999765443211   1222 377889999988  777777788876665544

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.35  E-value=6.1e-12  Score=112.19  Aligned_cols=111  Identities=11%  Similarity=0.098  Sum_probs=82.0

Q ss_pred             CEEEEECCCC--CccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           33 VTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        33 ~~VLDlGCG~--G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      .+|||||||.  ++.+..+++.  +..+|+++|.|+.||+.|++++.... ..++.|+++|+.+...  .+..  ....|
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~--~l~~~~~~~~~  156 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPAS--ILDAPELRDTL  156 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHH--HHTCHHHHTTC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhh--hhccccccccc
Confidence            6899999997  5566655443  56799999999999999999986532 2358999999987421  1110  02345


Q ss_pred             e-----EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       107 D-----~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |     .|+++.++|| +.+.++...+++.+.+.|+|||+|+++..
T Consensus       157 D~~~p~av~~~avLH~-l~d~~~p~~~l~~l~~~L~PGG~Lvls~~  201 (277)
T 3giw_A          157 DLTRPVALTVIAIVHF-VLDEDDAVGIVRRLLEPLPSGSYLAMSIG  201 (277)
T ss_dssp             CTTSCCEEEEESCGGG-SCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred             CcCCcchHHhhhhHhc-CCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence            4     5778899998 33334468899999999999999999843

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.35  E-value=3.1e-12  Score=118.43  Aligned_cols=109  Identities=19%  Similarity=0.074  Sum_probs=81.9

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ++..+ ..++.+|||||||+|..+..+++. +..+++++|++ .++.  +++.+..+...+++++.+|+. .++      
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~------  245 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL-REV------  245 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT-TCC------
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC-CCC------
Confidence            44443 246789999999999888888765 45589999994 4444  322222222335999999997 333      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +  +||+|++..++|+  .+.++...+|++++++|||||++++..
T Consensus       246 p--~~D~v~~~~vlh~--~~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          246 P--HADVHVLKRILHN--WGDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             C--CCSEEEEESCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             C--CCcEEEEehhccC--CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3  8999999999998  556777899999999999999999874

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.35  E-value=4.6e-12  Score=119.42  Aligned_cols=125  Identities=17%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++..+..++.+|||+|||+|..+..++..+..+|+|+|+|+.+++.|+++.+.++...+++++++|+.+..  ..+...
T Consensus       209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~--~~~~~~  286 (396)
T 2as0_A          209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM--EKLQKK  286 (396)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH--HHHHHT
T ss_pred             HHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH--HHHHhh
Confidence            344455557889999999999988888777667999999999999999999987764436899999976521  111112


Q ss_pred             CCceeEEEeccchh-----hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~lh-----~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+||+|++.....     ..+........++.++.++|+|||++++++.+.
T Consensus       287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            57899999854321     111223567889999999999999999886665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.34  E-value=1.3e-11  Score=105.18  Aligned_cols=105  Identities=13%  Similarity=0.046  Sum_probs=81.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+.  +++++++|+.+.         +.+||+|
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~---------~~~~D~v  116 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---------NSRVDIV  116 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---------CCCCSEE
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc---------CCCCCEE
Confidence            36789999999999888888777666899999999999999999876653  589999998652         2589999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++...+|.  ........+++.+.++|  ||.++..+++.
T Consensus       117 ~~~~p~~~--~~~~~~~~~l~~~~~~l--~~~~~~~~~~~  152 (207)
T 1wy7_A          117 IMNPPFGS--QRKHADRPFLLKAFEIS--DVVYSIHLAKP  152 (207)
T ss_dssp             EECCCCSS--SSTTTTHHHHHHHHHHC--SEEEEEEECCH
T ss_pred             EEcCCCcc--ccCCchHHHHHHHHHhc--CcEEEEEeCCc
Confidence            99988776  22233456788888888  66665554444

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.34  E-value=6.4e-13  Score=119.81  Aligned_cols=99  Identities=10%  Similarity=-0.000  Sum_probs=73.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEE-EEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f-~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|+.+..++..+..+|+|+|+|+.||+.+.++...      +.. ...|+...... .+  +..+||+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~r------v~~~~~~ni~~l~~~-~l--~~~~fD~v  155 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDR------VRSMEQYNFRYAEPV-DF--TEGLPSFA  155 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTT------EEEECSCCGGGCCGG-GC--TTCCCSEE
T ss_pred             cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcc------cceecccCceecchh-hC--CCCCCCEE
Confidence            5779999999999988888777777999999999999986443211      222 22333222211 11  23459999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|..++|.       +..+|.++.++|||||.+++.
T Consensus       156 ~~d~sf~s-------l~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          156 SIDVSFIS-------LNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEeeHhh-------HHHHHHHHHHHcCcCCEEEEE
Confidence            99887776       478999999999999999987

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.34  E-value=2.4e-12  Score=113.67  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=82.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh---cCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~---~~~~  105 (312)
                      +..+|||||||+|..+..++.. + ..+|+++|+|+.+++.|+++++..+...+++++++|+.+. + ..+..   ..++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l-~~l~~~~~~~~~  156 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-L-DEMIKDEKNHGS  156 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-H-HHHHHSGGGTTC
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-H-HHHHhccCCCCC
Confidence            5679999999999888777765 2 5699999999999999999998766555699999987542 1 11110   1478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|++.....       ....+++.+.++|||||++++.
T Consensus       157 fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          157 YDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             BSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEE
T ss_pred             EEEEEEcCchH-------HHHHHHHHHHHhCCCCeEEEEe
Confidence            99999876432       2678899999999999999986

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.34  E-value=4.2e-12  Score=116.16  Aligned_cols=112  Identities=18%  Similarity=0.093  Sum_probs=83.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.++++.+..+.. ++.++++|+.....      .+++||
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~------~~~~fD  189 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGE------LNVEFD  189 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGG------GCCCEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhccc------ccccCC
Confidence            47789999999999988887764  3469999999999999999998776532 48899999866432      246899


Q ss_pred             EEEeccc------hhhhc-----CCH-------HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQH------LQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~------lh~~~-----~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++...      ++..-     .+.       .....+++++.++|||||+++.++..
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            9998432      22100     011       12368999999999999999987543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.33  E-value=7.2e-12  Score=109.41  Aligned_cols=106  Identities=14%  Similarity=0.062  Sum_probs=82.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC--Cce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~--~~f  106 (312)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|++++...+...+++++++|+.+.  ...+...+  ++|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--l~~l~~~~~~~~f  149 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT--LEQLTQGKPLPEF  149 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--HHHHHTSSSCCCE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHHhcCCCCCc
Confidence            5679999999999877777665 2 4699999999999999999987765545689999986431  11121122  789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++.....       ....+++++.++|+|||++++.
T Consensus       150 D~V~~d~~~~-------~~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          150 DLIFIDADKR-------NYPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             EEEEECSCGG-------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEe
Confidence            9999876533       3677899999999999999986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.33  E-value=4.3e-12  Score=113.62  Aligned_cols=108  Identities=13%  Similarity=0.054  Sum_probs=86.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||+|||+|..+..++.. + ..+++++|+|+.+++.|+++....+...++.++++|+.+. +      ++++|
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  182 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  182 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-c------cCCcc
Confidence            347889999999999888877766 3 5699999999999999999987665434589999998664 3      35789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|++...         ....+++++.++|+|||.+++..+..+.+
T Consensus       183 D~V~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  219 (277)
T 1o54_A          183 DALFLDVP---------DPWNYIDKCWEALKGGGRFATVCPTTNQV  219 (277)
T ss_dssp             EEEEECCS---------CGGGTHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             CEEEECCc---------CHHHHHHHHHHHcCCCCEEEEEeCCHHHH
Confidence            99998432         13577999999999999999999876544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.32  E-value=2.2e-12  Score=115.67  Aligned_cols=116  Identities=10%  Similarity=-0.005  Sum_probs=84.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +..+|+|+|+|+.+++.++++.+..+.. ++.++++|+.....  .+....++||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~--~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKD--YLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHH--HHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcch--hhhhccccCC
Confidence            47889999999999988877763  3369999999999999999998876533 58899998754321  1110257899


Q ss_pred             EEEeccchhh--hc------------CCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQHLQM--CF------------ETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~lh~--~~------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++......  .+            ........+++++.++|||||+++.++..
T Consensus       159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs  213 (274)
T 3ajd_A          159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS  213 (274)
T ss_dssp             EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            9998632211  00            00123478899999999999999988543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=7e-12  Score=112.28  Aligned_cols=105  Identities=15%  Similarity=0.016  Sum_probs=85.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ...++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+.++.. ++.++++|+.+. .      ..++|
T Consensus       116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-~------~~~~~  187 (272)
T 3a27_A          116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-E------LKDVA  187 (272)
T ss_dssp             SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-C------CTTCE
T ss_pred             hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-C------ccCCc
Confidence            3567889999999999988888776 4569999999999999999998876532 378999998764 2      24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|++....        ....++..+.+.|+|||++++++..
T Consensus       188 D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          188 DRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             EEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            999988753        2456889999999999999988443

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.32  E-value=6.1e-12  Score=110.33  Aligned_cols=106  Identities=10%  Similarity=-0.002  Sum_probs=83.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh---cCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~---~~~~  105 (312)
                      +..+|||||||+|..+..++.. + ..+++++|+++++++.|+++++..+...+++++++|+.+.  ...+..   ..++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~--l~~l~~~~~~~~~  147 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA--LDNLLQGQESEGS  147 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHSTTCTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH--HHHHHhccCCCCC
Confidence            5679999999999888877765 2 5799999999999999999998766555699999987542  111110   1478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ||+|++.....       ....+++.+.++|+|||++++.
T Consensus       148 fD~I~~d~~~~-------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          148 YDFGFVDADKP-------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             EEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCEEEECCchH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence            99999875433       3678899999999999999986

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.31  E-value=7.8e-12  Score=116.75  Aligned_cols=97  Identities=19%  Similarity=0.122  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++       .+++++.+|+.+ ++      +.+  |+
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~------p~~--D~  264 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GV------PKG--DA  264 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC------CCC--SE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CC------CCC--CE
Confidence            35689999999999888888765 4568999999 8888777543       238999999986 44      333  99


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++..++|+  .+.++...+|++++++|||||++++.
T Consensus       265 v~~~~vlh~--~~~~~~~~~l~~~~~~L~pgG~l~i~  299 (368)
T 3reo_A          265 IFIKWICHD--WSDEHCLKLLKNCYAALPDHGKVIVA  299 (368)
T ss_dssp             EEEESCGGG--BCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             EEEechhhc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998  56777889999999999999999987

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.31  E-value=1.1e-11  Score=115.66  Aligned_cols=103  Identities=18%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             HHHHh--cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           24 LIKIY--SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        24 li~~~--~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      ++..+  ..+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++       .+++|+.+|+.+ ++     
T Consensus       192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-----  257 (364)
T 3p9c_A          192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EV-----  257 (364)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CC-----
T ss_pred             HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CC-----
Confidence            44444  235689999999999888888765 4568999999 8888776542       239999999987 54     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                       +.+  |+|++..++|+  .+.++...+|++++++|||||++++.
T Consensus       258 -p~~--D~v~~~~vlh~--~~d~~~~~~L~~~~~~L~pgG~l~i~  297 (364)
T 3p9c_A          258 -PSG--DTILMKWILHD--WSDQHCATLLKNCYDALPAHGKVVLV  297 (364)
T ss_dssp             -CCC--SEEEEESCGGG--SCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -CCC--CEEEehHHhcc--CCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence             333  99999999998  56778899999999999999999987

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.31  E-value=7.9e-12  Score=116.75  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=83.4

Q ss_pred             HHHHHh--cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 021467           23 ALIKIY--SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        23 ~li~~~--~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      .++..+  ..+..+|||||||+|..+..++.. +..+++++|+ +.+++.|++.   .    .++++.+|+.+ ++    
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~----~v~~~~~d~~~-~~----  265 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---S----GIEHVGGDMFA-SV----  265 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---T----TEEEEECCTTT-CC----
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---C----CCEEEeCCccc-CC----
Confidence            344554  346789999999999888888765 3458999999 9999877642   1    28999999977 44    


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                        + . ||+|++..++|+  .+......+|++++++|||||++++.
T Consensus       266 --~-~-~D~v~~~~~lh~--~~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 --P-Q-GDAMILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             --C-C-EEEEEEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --C-C-CCEEEEeccccc--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence              3 2 999999999998  45666779999999999999999987

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.30  E-value=4.7e-12  Score=109.73  Aligned_cols=106  Identities=12%  Similarity=0.100  Sum_probs=82.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC--Cce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA--NQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~--~~f  106 (312)
                      ++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..+...+++++++|+.+.  ...+....  ++|
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--~~~~~~~~~~~~~  146 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET--LDELLAAGEAGTF  146 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH--HHHHHHTTCTTCE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH--HHHHHhcCCCCCc
Confidence            5689999999999887777664 2 5699999999999999999988765445689999987542  11111111  689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++......       ...+++++.++|+|||++++.
T Consensus       147 D~v~~d~~~~~-------~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          147 DVAVVDADKEN-------CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             EEEEECSCSTT-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEECCCHHH-------HHHHHHHHHHHcCCCeEEEEE
Confidence            99998764332       567899999999999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.30  E-value=1.1e-11  Score=116.65  Aligned_cols=120  Identities=11%  Similarity=0.024  Sum_probs=87.7

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ..++..+..++.+|||+|||+|+.+..++..+. .|+|+|+|+.+++.|+++.+.++..  ..+.++|+.+.     +..
T Consensus       205 r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~-----l~~  276 (393)
T 4dmg_A          205 RRLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPT-----LRG  276 (393)
T ss_dssp             HHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHH-----HHT
T ss_pred             HHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHH-----HHH
Confidence            445566677799999999999998888877665 5999999999999999999877643  34667876542     111


Q ss_pred             cCCceeEEEeccch-h----hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          102 KANQADLVCCFQHL-Q----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       102 ~~~~fD~V~~~~~l-h----~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+.||+|++.... +    ...........++..+.++|+|||+++..+.+.
T Consensus       277 ~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          277 LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            13449999986542 1    111113456788999999999999999665444

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.29  E-value=3.7e-12  Score=111.71  Aligned_cols=101  Identities=15%  Similarity=0.091  Sum_probs=75.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++.+|||||||+|..+..++..     +..+|+|+|+|+.|++.|+. .     ..+++++++|+.+......+  ...+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~-----~~~v~~~~gD~~~~~~l~~~--~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D-----MENITLHQGDCSDLTTFEHL--REMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-G-----CTTEEEEECCSSCSGGGGGG--SSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-c-----CCceEEEECcchhHHHHHhh--ccCC
Confidence            4579999999999888877664     35699999999999998872 1     12389999999874210111  2247


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHh-ccCCCcEEEEEe
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSS-LLKPGGYFLGIT  146 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~-~LkpGG~~i~~~  146 (312)
                      ||+|++..+ |.      ....++.++.+ +|||||++++..
T Consensus       153 fD~I~~d~~-~~------~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          153 HPLIFIDNA-HA------NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             SSEEEEESS-CS------SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCEEEECCc-hH------hHHHHHHHHHHhhCCCCCEEEEEe
Confidence            999998664 31      35678999997 999999999864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.29  E-value=3.5e-12  Score=112.57  Aligned_cols=114  Identities=10%  Similarity=0.033  Sum_probs=76.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~~fD~  108 (312)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++...++...+++++++|+.+.-+ ..+... +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM-DALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST-TTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhh-hhhhcccCCcccE
Confidence            4679999999999877766654 3469999999999999999999876654458999999765211 001101 268999


Q ss_pred             EEeccchhhhcCC-----------HHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFET-----------EERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~-----------~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|...+|..-..           .+....++..+.++|||||.+.+.
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            9998665541100           012235678899999999988654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.29  E-value=1.7e-11  Score=104.07  Aligned_cols=108  Identities=15%  Similarity=0.115  Sum_probs=76.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--c---C
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--K---A  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~---~  103 (312)
                      ..++.+|||||||+|+.+..++.. ..+|+|+|+++..        .    ...+.++++|+.+......+..  .   .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------~----~~~v~~~~~D~~~~~~~~~~~~~~~~~~~   89 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------E----IAGVRFIRCDIFKETIFDDIDRALREEGI   89 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC--------C----CTTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc--------c----CCCeEEEEccccCHHHHHHHHHHhhcccC
Confidence            468899999999999888777665 6699999999752        0    1138899999988654322211  1   1


Q ss_pred             CceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ++||+|+|..+....       ..+....+.+++.+.++|||||.|++.+...
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            489999996532210       1112335678999999999999999875544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.29  E-value=2.6e-11  Score=114.27  Aligned_cols=122  Identities=14%  Similarity=0.096  Sum_probs=91.4

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhhhcC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~-~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      +..+ .++.+|||+|||+|+.+..++..+..+|+|+|+|+.+++.|+++.+.++. ..+++++++|+.+..  ..+....
T Consensus       215 l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~--~~~~~~~  291 (396)
T 3c0k_A          215 TRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL--RTYRDRG  291 (396)
T ss_dssp             HHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHH--HHHHHTT
T ss_pred             HHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH--HHHHhcC
Confidence            4444 46789999999999988888777667999999999999999999987764 336899999986521  1111124


Q ss_pred             CceeEEEeccchh-----hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh-----~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .+||+|++.....     ..+........++.++.+.|+|||++++++...
T Consensus       292 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             CCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            6899999964321     112223567889999999999999999886544

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.29  E-value=8.1e-12  Score=105.44  Aligned_cols=110  Identities=20%  Similarity=0.106  Sum_probs=76.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CC---------CeEEEEeCChHHHHHHHHHHHhcCCCceEEEE-EcCCCCCchhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LI---------ANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFET   97 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~---------~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~-~~D~~~~~~~~   97 (312)
                      +.++.+|||+|||+|..+..++.. +.         .+|+|+|+|+.+         .   ...+.++ ++|+.......
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~---~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P---LEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C---CTTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c---CCCCeEEEeccCCCHHHHH
Confidence            467899999999999888877766 33         689999999842         0   0127788 88887643221


Q ss_pred             hhh--hcCCceeEEEeccchhhhcCCHHHH-------HHHHHHHHhccCCCcEEEEEecChh
Q 021467           98 QMQ--EKANQADLVCCFQHLQMCFETEERA-------RRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus        98 ~~~--~~~~~fD~V~~~~~lh~~~~~~~~~-------~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      .+.  .++++||+|+|..++|.......+.       ..+++++.++|||||.|++.+....
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  149 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS  149 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            110  1235899999977555322211222       5889999999999999999866553

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.28  E-value=7.2e-12  Score=112.75  Aligned_cols=110  Identities=13%  Similarity=0.060  Sum_probs=81.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--C--------CCceEEEEEcCCCCCchhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R--------KNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~--~--------~~~~~~f~~~D~~~~~~~~~   98 (312)
                      .+++.+|||||||+|..+..+++.+..+++++|+++.+++.|++++ ..  +        ...+++++++|+...     
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~-----  146 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF-----  146 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH-----
Confidence            3456899999999998888877665679999999999999999987 32  1        123589999986431     


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHH--HHHHHHHHHhccCCCcEEEEEec
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~--~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +.. +++||+|++....+.  .....  ...+++++.++|+|||++++...
T Consensus       147 l~~-~~~fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          147 IKN-NRGFDVIIADSTDPV--GPAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             HHH-CCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcc-cCCeeEEEECCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            111 578999998765332  11222  27889999999999999998743

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.27  E-value=2.2e-11  Score=109.17  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=87.9

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .+.....++.+|||+|||+|..+..++..+..+|+++|+++.+++.++++.+.++...+++++++|+.+..       ..
T Consensus       118 ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-------~~  190 (278)
T 3k6r_A          118 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GE  190 (278)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CC
T ss_pred             HHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-------cc
Confidence            34556778999999999999998888877777999999999999999999998887777999999987743       35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +.||.|++... +.       ...++..+.++|||||++.+.
T Consensus       191 ~~~D~Vi~~~p-~~-------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          191 NIADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             SCEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             cCCCEEEECCC-Cc-------HHHHHHHHHHHcCCCCEEEEE
Confidence            78999987653 22       245677788899999998654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.27  E-value=1.3e-11  Score=111.83  Aligned_cols=113  Identities=18%  Similarity=0.047  Sum_probs=80.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHh--cCC-CceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~--~~~-~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +++.+|||||||+|..+..+++. +..+++++|+|+.+++.|++++..  .+. ..+++++++|+...     +...+++
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  163 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----VRKFKNE  163 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----GGGCSSC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----HhhCCCC
Confidence            45689999999999888888766 467999999999999999998753  111 23489999987541     1113578


Q ss_pred             eeEEEeccchhhhcCCHH--HHHHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEE--RARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~--~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++...-+. .....  ....+++++.++|+|||++++.+.+
T Consensus       164 fD~Ii~d~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          164 FDVIIIDSTDPT-AGQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             EEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCcc-cCchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence            999998653331 01111  1268899999999999999998654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.26  E-value=1.8e-12  Score=115.77  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=73.4

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEE--EcCCCCCchhhhhhhcCC
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFF--EADPCAENFETQMQEKAN  104 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~-~~~~~~~~f~--~~D~~~~~~~~~~~~~~~  104 (312)
                      ...++.+|||||||+|+.+..++..  .+|+|+|+++ |+..++++... ......+.++  ++|+...        +++
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l--------~~~  139 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL--------PVE  139 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS--------CCC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC--------CCC
Confidence            4567889999999999887776655  6899999998 54333221100 0111147888  8898763        347


Q ss_pred             ceeEEEeccchhhhcCC-HHHH--HHHHHHHHhccCCCc--EEEEEec
Q 021467          105 QADLVCCFQHLQMCFET-EERA--RRLLQNVSSLLKPGG--YFLGITP  147 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~-~~~~--~~~l~~i~~~LkpGG--~~i~~~p  147 (312)
                      +||+|+|..+ ++.... .+..  ..+|..+.++|||||  .|++.+.
T Consensus       140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~  186 (265)
T 2oxt_A          140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL  186 (265)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence            8999999876 432111 1111  138899999999999  9998753

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.26  E-value=8.4e-12  Score=109.25  Aligned_cols=100  Identities=11%  Similarity=0.025  Sum_probs=68.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEE-EcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFF-EADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~-~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++...      +... ..++...... .+  ....||.+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~-~~--~~~~~d~~  107 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLA-DF--EQGRPSFT  107 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGG-GC--CSCCCSEE
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHh-Hc--CcCCCCEE
Confidence            4679999999999988888877666999999999999998775432      1111 1111111100 00  11235666


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++..++..       ...+++++.++|||||.+++.+
T Consensus       108 ~~D~v~~~-------l~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          108 SIDVSFIS-------LDLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             EECCSSSC-------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEEhhh-------HHHHHHHHHHhccCCCEEEEEE
Confidence            66554443       2678999999999999999875

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.26  E-value=5e-12  Score=124.62  Aligned_cols=116  Identities=17%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .....+.+|||||||.|..+..+++.+ ..|+|||+|+.+|+.|+.+....+ ..+++|.++|+.+..-  .  ..+++|
T Consensus        62 ~~~~~~~~vLDvGCG~G~~~~~la~~g-a~V~giD~~~~~i~~a~~~a~~~~-~~~~~~~~~~~~~~~~--~--~~~~~f  135 (569)
T 4azs_A           62 RALGRPLNVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENP-DFAAEFRVGRIEEVIA--A--LEEGEF  135 (569)
T ss_dssp             HHHTSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHTST-TSEEEEEECCHHHHHH--H--CCTTSC
T ss_pred             hhcCCCCeEEEECCCCcHHHHHHHhCC-CEEEEECCCHHHHHHHHHHHHhcC-CCceEEEECCHHHHhh--h--ccCCCc
Confidence            334567899999999997777776665 499999999999999999987654 2358999998754211  0  035789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecChh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDSS  150 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~~  150 (312)
                      |+|+|..++||+-. . .....+..+.+.|+++|..++. +..++
T Consensus       136 D~v~~~e~~ehv~~-~-~~~~~~~~~~~tl~~~~~~~~~~~~~~e  178 (569)
T 4azs_A          136 DLAIGLSVFHHIVH-L-HGIDEVKRLLSRLADVTQAVILELAVKE  178 (569)
T ss_dssp             SEEEEESCHHHHHH-H-HCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred             cEEEECcchhcCCC-H-HHHHHHHHHHHHhccccceeeEEecccc
Confidence            99999999998421 1 1122344566667776655544 44433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.26  E-value=2.1e-11  Score=122.74  Aligned_cols=113  Identities=15%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|||+|||+|+.+..++..+..+|+++|+|+.+++.|+++.+.++.. .+++++++|+.+.     +....++||+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-----l~~~~~~fD~I  613 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-----LREANEQFDLI  613 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-----HHHCCCCEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-----HHhcCCCccEE
Confidence            67899999999999888877777778999999999999999999887654 3689999998652     11135789999


Q ss_pred             Eeccchh-------hhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          110 CCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh-------~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ++.....       ..+........++..+.++|+|||++++++..
T Consensus       614 i~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          614 FIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             EECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9965321       01233567888999999999999999988655

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.26  E-value=2.2e-11  Score=112.87  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+..+|||||||+|..+..++.. +..+++|+|+ +.+++.|++.   .    .++++.+|+.+ ++      +  .||+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~----~v~~~~~d~~~-~~------p--~~D~  249 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---N----NLTYVGGDMFT-SI------P--NADA  249 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---T----TEEEEECCTTT-CC------C--CCSE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---C----CcEEEeccccC-CC------C--CccE
Confidence            45689999999999888888765 4568999999 9999887652   1    28999999876 43      2  3999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCC---CcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp---GG~~i~~~  146 (312)
                      |++..++|+  .+......+|++++++|||   ||++++..
T Consensus       250 v~~~~~lh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          250 VLLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeehhhcc--CCHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            999999998  4566677999999999999   99999873

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.25  E-value=3.8e-11  Score=111.46  Aligned_cols=103  Identities=23%  Similarity=0.271  Sum_probs=85.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||||||+|..+..+++. +..+++..|. +.+++.|+++..... ..+++++.+|+...+.        ..+|+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~--------~~~D~~  248 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL--------PEADLY  248 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC--------CCCSEE
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC--------CCceEE
Confidence            5579999999999988888776 5558889997 789999998875433 3469999999977543        458999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++..++|+  .+.++...+|++++++|+|||.+++.
T Consensus       249 ~~~~vlh~--~~d~~~~~iL~~~~~al~pgg~lli~  282 (353)
T 4a6d_A          249 ILARVLHD--WADGKCSHLLERIYHTCKPGGGILVI  282 (353)
T ss_dssp             EEESSGGG--SCHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Eeeeeccc--CCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            99999998  67788899999999999999999987

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.25  E-value=1.1e-11  Score=113.32  Aligned_cols=113  Identities=14%  Similarity=0.056  Sum_probs=83.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--C-C-CceEEEEEcCCCCCchhhhhhhcC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--R-K-NFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~--~-~-~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .++..+|||||||+|..+..+++. +..+++++|+++.+++.|++++...  + . ..+++++++|+...     +...+
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~  149 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----LERTE  149 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----HHHCC
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-----HHhcC
Confidence            345689999999999888887765 4579999999999999999987531  1 0 23489999997542     11135


Q ss_pred             CceeEEEeccchhhhcCC-HHH--HHHHHHHHHhccCCCcEEEEEe
Q 021467          104 NQADLVCCFQHLQMCFET-EER--ARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~-~~~--~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++||+|++....|..... ...  ...+++++.++|||||++++..
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            789999997655430001 111  3688999999999999999874

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.25  E-value=1.2e-11  Score=112.51  Aligned_cols=113  Identities=11%  Similarity=-0.009  Sum_probs=80.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHh--cCC-CceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN--QRK-NFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~--~~~-~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .+..+|||||||+|..+..+++. +..+++++|+++.+++.|++++..  .+. ..+++++++|+...     ++..+++
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-----l~~~~~~  168 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-----MKQNQDA  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----HHTCSSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-----HhhCCCC
Confidence            45689999999999888887766 357999999999999999998754  111 23488999987441     1113578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ||+|++....+...........+++++.++|+|||++++...
T Consensus       169 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          169 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence            999998765432100011236789999999999999998763

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.25  E-value=1.1e-11  Score=111.31  Aligned_cols=114  Identities=12%  Similarity=0.074  Sum_probs=83.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--C-CCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--R-KNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~--~-~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++..+|||||||+|..+..+++. +..+++++|+++.+++.|++++...  + ...+++++.+|+...     +....++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-----l~~~~~~  148 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-----IAKSENQ  148 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-----HHTCCSC
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-----HhhCCCC
Confidence            45689999999999888887766 5679999999999999999987431  1 123589999997541     1113578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++....+......-....+++.+.++|+|||++++...+
T Consensus       149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999996543321000001267899999999999999998654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.24  E-value=8.4e-11  Score=105.97  Aligned_cols=104  Identities=13%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.|+++....+...+++++++|+...++        ..||+
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~--------~~fD~   96 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--------PFFDT   96 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------CCCSE
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc--------hhhcE
Confidence            3477899999999999888887765 49999999999999999998654332358999999987554        37999


Q ss_pred             EEeccchhhhcCCHHHHHHHHH--------------HH--HhccCCCcEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQ--------------NV--SSLLKPGGYFLG  144 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~--------------~i--~~~LkpGG~~i~  144 (312)
                      |+++...+.+   .+....++.              ++  +++|+|||.+++
T Consensus        97 vv~nlpy~~~---~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~  145 (285)
T 1zq9_A           97 CVANLPYQIS---SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC  145 (285)
T ss_dssp             EEEECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred             EEEecCcccc---hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence            9998776651   222223332              22  358999998754

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.24  E-value=1.4e-11  Score=115.50  Aligned_cols=120  Identities=13%  Similarity=0.099  Sum_probs=89.4

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++..+  ++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+.++... ++++++|+.+..  ..+....
T Consensus       204 ~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~--~~~~~~~  277 (382)
T 1wxx_A          204 YMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLL--RRLEKEG  277 (382)
T ss_dssp             HGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHH--HHHHHTT
T ss_pred             HHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHH--HHHHhcC
Confidence            34444  6789999999999988888776 6689999999999999999998776433 899999976521  1111125


Q ss_pred             CceeEEEeccchh-----hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh-----~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .+||+|++.....     ..+........++..+.++|+|||++++++...
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            7899999854321     111123567889999999999999999886554

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.24  E-value=7.6e-11  Score=110.24  Aligned_cols=105  Identities=10%  Similarity=-0.138  Sum_probs=82.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+| |+|..+..++..+. .+++|+|+|+.|++.|+++.+..+.. +++++++|+.. .+..     .+++||+
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD~  244 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFDT  244 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBSE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCccE
Confidence            578999999 99988887776654 69999999999999999998876643 69999999977 2210     2368999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p  147 (312)
                      |++...++.    . ....+++++.++||||| .+++.+.
T Consensus       245 Vi~~~p~~~----~-~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          245 FITDPPETL----E-AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             EEECCCSSH----H-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             EEECCCCch----H-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence            999876554    1 25889999999999999 4355543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.24  E-value=1.5e-11  Score=112.80  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~--~~-~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +++.+|||||||+|..+..+++. +..+++++|+|+.+++.|++++...  +. ..+++++++|+.+.     +...+++
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  189 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----LENVTNT  189 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----HHHCCSC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-----HhhcCCC
Confidence            45689999999999888887766 4679999999999999999987641  11 23489999987541     1113578


Q ss_pred             eeEEEeccchhhhcCCHHHH--HHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~--~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++...-+.  ......  +.+++++.++|+|||++++...+
T Consensus       190 fDvIi~d~~~p~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          190 YDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             EEEEEEECCCSS--SGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ceEEEECCcCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            999998653221  111111  78899999999999999998654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.23  E-value=2e-11  Score=111.62  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=79.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~--~~-~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .++..+|||||||+|..+..+++. +..+++++|+++.+++.|++++...  +. ..+++++++|+...     +...++
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-----l~~~~~  180 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-----LKNHKN  180 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-----HHHCTT
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-----HHhcCC
Confidence            345689999999999888877765 4579999999999999999987542  11 23488999887541     111357


Q ss_pred             ceeEEEeccchhhhcCCHHHH--HHHHHHHHhccCCCcEEEEEe
Q 021467          105 QADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~--~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +||+|++...-+.  ......  ..+++++.++|+|||++++..
T Consensus       181 ~fD~Ii~d~~~~~--~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPV--GPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CEEEEEECCC---------------HHHHHHHHEEEEEEEEEEC
T ss_pred             CceEEEEcCCCCC--CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8999998764332  111222  789999999999999999985

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=1.3e-11  Score=112.52  Aligned_cols=111  Identities=11%  Similarity=0.076  Sum_probs=80.6

Q ss_pred             CEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|||||||.|..+..+++ .+..+++++|+++.+++.|++++.... ..+++++++|+....  ...  .+++||+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l--~~~--~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVA--ESF--TPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHH--HTC--CTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHH--hhc--cCCCCCEEEE
Confidence            4999999999988888777 345599999999999999999875431 234899999975421  000  2478999998


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ....+......-....+++.+.++|+|||+|++...+
T Consensus       166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6543321110001268999999999999999988543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.23  E-value=1.7e-11  Score=110.40  Aligned_cols=112  Identities=14%  Similarity=0.146  Sum_probs=83.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +++.+|||||||+|..+..+++. +..+++++|+++.+++.|++++...+   ...+++++++|+...     +....++
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-----l~~~~~~  151 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-----LENVTNT  151 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-----HHHCCSC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-----HHhCCCC
Confidence            45689999999999888887765 35799999999999999999875421   023488999987542     1112578


Q ss_pred             eeEEEeccchhhhcCCHHHH--HHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERA--RRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~--~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++....+.  .....+  ..+++++.++|+|||++++...+
T Consensus       152 fD~Ii~d~~~~~--~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          152 YDVIIVDSSDPI--GPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             EEEEEEECCCTT--TGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ceEEEEcCCCCC--CcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            999998654332  111222  68999999999999999998654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.22  E-value=2.1e-11  Score=112.36  Aligned_cols=113  Identities=13%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc--CC-CceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ--RK-NFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~--~~-~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++..+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...  +. ..+++++++|+... + ...  .+++
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~-l-~~~--~~~~  194 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF-L-KNA--AEGS  194 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH-H-HTS--CTTC
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH-H-Hhc--cCCC
Confidence            45689999999999888887765 3569999999999999999987542  11 12489999997542 1 000  2478


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ||+|++....+...........+++++.++|+|||++++..
T Consensus       195 fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          195 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            99999865421100100113789999999999999999973

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.22  E-value=1.4e-12  Score=108.70  Aligned_cols=93  Identities=11%  Similarity=0.077  Sum_probs=73.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.++.+|||+|||.               +++|+|+.|++.|+++....     +.+.++|+.+.++.   ..++++||+
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~~-----~~~~~~d~~~~~~~---~~~~~~fD~   66 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGNE-----GRVSVENIKQLLQS---AHKESSFDI   66 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTTT-----SEEEEEEGGGGGGG---CCCSSCEEE
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcccC-----cEEEEechhcCccc---cCCCCCEeE
Confidence            56889999999986               23999999999999987432     78899998764331   003578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+|..++|+...   +...++++++++|||||+|++..|
T Consensus        67 V~~~~~l~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           67 ILSGLVPGSTTL---HSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEECCSTTCCCC---CCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECChhhhccc---CHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999999998312   257899999999999999999643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.22  E-value=1.9e-12  Score=116.28  Aligned_cols=108  Identities=19%  Similarity=0.038  Sum_probs=73.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEE--EcCCCCCchhhhhhhcCC
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFF--EADPCAENFETQMQEKAN  104 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~-~~~~~~~~f~--~~D~~~~~~~~~~~~~~~  104 (312)
                      ...++.+|||||||+|+.+..++..  .+|+|+|+|+ |+..++++... .....++.++  ++|+...        +++
T Consensus        79 ~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l--------~~~  147 (276)
T 2wa2_A           79 GVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM--------EPF  147 (276)
T ss_dssp             SCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC--------CCC
T ss_pred             CCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC--------CCC
Confidence            3457889999999999887777665  6899999998 64433222100 0111247888  8887652        357


Q ss_pred             ceeEEEeccchhhhcCC-HHHH--HHHHHHHHhccCCCc--EEEEEec
Q 021467          105 QADLVCCFQHLQMCFET-EERA--RRLLQNVSSLLKPGG--YFLGITP  147 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~-~~~~--~~~l~~i~~~LkpGG--~~i~~~p  147 (312)
                      +||+|+|..+ ++.... .+..  ..+|+.+.++|||||  .|++.+.
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            8999999877 432111 1111  137899999999999  9988753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.22  E-value=1.2e-11  Score=112.65  Aligned_cols=108  Identities=17%  Similarity=0.069  Sum_probs=73.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeC----ChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhhhc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDV----ATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEK  102 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDi----s~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~~~  102 (312)
                      ...++.+|||||||+|+.+..+++.  .+|+|+|+    ++.+++.+.  .+..+ ...+.++++ |+...+        
T Consensus        79 ~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--------  145 (305)
T 2p41_A           79 LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--------  145 (305)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--------
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--------
Confidence            3457889999999999887777665  58999999    565442111  00000 123888888 876532        


Q ss_pred             CCceeEEEeccchh---hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          103 ANQADLVCCFQHLQ---MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       103 ~~~fD~V~~~~~lh---~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..+||+|+|..+.+   +..+ ......+|..+.++|||||.|++.+...
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d-~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVE-AGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHH-HHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cCCCCEEEECCccccCcchhh-HHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            46899999987653   2111 1111257899999999999999986655

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.21  E-value=1.9e-11  Score=112.97  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC------CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI------ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~------~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      ++.+|||+|||+|+.+..+.....      .+++|+|+++.+++.|+.+....+.  .+.+.++|.....       ...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-------~~~  200 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  200 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-------ccC
Confidence            567999999999998877765421      5899999999999999998775543  4788999986632       247


Q ss_pred             ceeEEEeccchhhhcCCHHH---------------HHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEER---------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~---------------~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+++..+++ ....+.               ...+++.+.+.|+|||++++.+|++
T Consensus       201 ~fD~Ii~NPPfg~-~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          201 PVDVVISDLPVGY-YPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             CEEEEEEECCCSE-ESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             CccEEEECCCCCC-cCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence            8999999988766 222221               1368999999999999999998765

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.18  E-value=6.3e-11  Score=109.25  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=83.4

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ...+.++.+|||+|||+|..+.. +. +..+|+|+|+|+.+++.|+++.+.++...++.++++|+.+..         ++
T Consensus       190 ~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~  258 (336)
T 2yx1_A          190 MKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VK  258 (336)
T ss_dssp             HHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CC
T ss_pred             HHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CC
Confidence            34456789999999999988777 65 677999999999999999999988765446899999986521         67


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++... ++       ...++..+.++|+|||.+++....
T Consensus       259 fD~Vi~dpP-~~-------~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          259 GNRVIMNLP-KF-------AHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEEECCT-TT-------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcEEEECCc-Hh-------HHHHHHHHHHHcCCCCEEEEEEee
Confidence            999998643 22       237889999999999999886433

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.18  E-value=1e-10  Score=108.60  Aligned_cols=96  Identities=17%  Similarity=0.137  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||||||+|..+..+++. +..+++++|+ +.+++.|++.   .    .++++.+|+.+ ++      +  .||+|
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~----~v~~~~~d~~~-~~------~--~~D~v  255 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN---E----NLNFVGGDMFK-SI------P--SADAV  255 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC---S----SEEEEECCTTT-CC------C--CCSEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC---C----CcEEEeCccCC-CC------C--CceEE
Confidence            5689999999999888888766 4458999999 7888766541   1    28999999877 44      2  49999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCC---CcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKP---GGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp---GG~~i~~  145 (312)
                      ++..++|+  .+.+....+|+++.++|+|   ||++++.
T Consensus       256 ~~~~vlh~--~~d~~~~~~l~~~~~~L~p~~~gG~l~i~  292 (358)
T 1zg3_A          256 LLKWVLHD--WNDEQSLKILKNSKEAISHKGKDGKVIII  292 (358)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred             EEcccccC--CCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence            99999998  4566677999999999999   9999987

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.18  E-value=4.2e-11  Score=114.67  Aligned_cols=111  Identities=19%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  ....|+|+|+|+.+++.++++.+..+..  +.++++|+.....     ...++||
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~-----~~~~~FD  172 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAE-----AFGTYFH  172 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHH-----HHCSCEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhh-----hccccCC
Confidence            47889999999999988887765  3368999999999999999999877654  7888888654221     0257899


Q ss_pred             EEEeccc------hhhhc-----CC-------HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQH------LQMCF-----ET-------EERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~------lh~~~-----~~-------~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|++...      ++..-     .+       ......+++++.++|||||+++.++.
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9996221      11100     01       12347899999999999999998754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.18  E-value=8.4e-11  Score=102.46  Aligned_cols=103  Identities=17%  Similarity=0.085  Sum_probs=81.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+..+|||||||.|-.+..|.  +...|+|+||++.+++.++++....+  .+..+.++|....++       .++||+|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~-------~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPP-------AEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCC-------CCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCC-------CCCcchH
Confidence            456899999999997777776  66799999999999999999987654  457889999887664       4699999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++.-++|+ ++  .+.+....++...|+++|+++- +|
T Consensus       173 Lllk~lh~-LE--~q~~~~~~~ll~aL~~~~vvVs-fP  206 (253)
T 3frh_A          173 LIFKLLPL-LE--REQAGSAMALLQSLNTPRMAVS-FP  206 (253)
T ss_dssp             EEESCHHH-HH--HHSTTHHHHHHHHCBCSEEEEE-EE
T ss_pred             HHHHHHHH-hh--hhchhhHHHHHHHhcCCCEEEE-cC
Confidence            99999998 22  2223344488889999977664 44

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.17  E-value=2.3e-10  Score=109.53  Aligned_cols=114  Identities=21%  Similarity=0.195  Sum_probs=83.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++.. + ..+++|+|+|+.+++.++++.+..+.. ++.++++|+...+..  +  ++++||
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~--~--~~~~fD  332 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKAPEI--I--GEEVAD  332 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCCSSS--S--CSSCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhcchh--h--ccCCCC
Confidence            47789999999999988887764 2 269999999999999999998766532 488999998765410  0  236899


Q ss_pred             EEEec-----c-chhhh------c--CCH----HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCF-----Q-HLQMC------F--ETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~-----~-~lh~~------~--~~~----~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++.     . .++..      .  .+.    .....+++++.++|||||+++.++..
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs  391 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS  391 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99962     1 22210      0  001    11267899999999999999987543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.16  E-value=6.2e-11  Score=104.32  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .+..+|||||||+|-.+..|... +..+|+++||++.|++.++++...++..  ..+.+.|......       .++||+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p-------~~~~Dv  201 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL-------DEPADV  201 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC-------CSCCSE
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC-------CCCcch
Confidence            45679999999999888888766 6679999999999999999999877643  6778888876553       688999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |++.-++|+ ++ .+.....+ ++...|+|+|+|+--
T Consensus       202 aL~lkti~~-Le-~q~kg~g~-~ll~aL~~~~vvVSf  235 (281)
T 3lcv_B          202 TLLLKTLPC-LE-TQQRGSGW-EVIDIVNSPNIVVTF  235 (281)
T ss_dssp             EEETTCHHH-HH-HHSTTHHH-HHHHHSSCSEEEEEE
T ss_pred             HHHHHHHHH-hh-hhhhHHHH-HHHHHhCCCCEEEec
Confidence            999999998 22 22223444 899999999988754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.14  E-value=2.9e-10  Score=108.18  Aligned_cols=112  Identities=14%  Similarity=0.111  Sum_probs=83.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|||+|+.+..++... ..+++|+|+++.+++.++++....+.  .+.++++|+.....  .+  ++++||+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~--~~--~~~~fD~  318 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQ--WC--GEQQFDR  318 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHH--HH--TTCCEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchh--hc--ccCCCCE
Confidence            478899999999999888887653 36999999999999999999887653  36889999877541  11  3478999


Q ss_pred             EEecc------chhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQ------HLQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~------~lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++..      .++..     ..+.       .....+++++.++|||||+++.++.
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99632      12210     0011       1236889999999999999998763

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.12  E-value=1.7e-10  Score=111.13  Aligned_cols=111  Identities=12%  Similarity=0.035  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|+.+..++..  +...|+|+|+|+.+++.++++.+..+.. ++.++++|+......     .+++||+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~-----~~~~fD~  190 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAA-----VPEMFDA  190 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHH-----STTCEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhh-----ccccCCE
Confidence            7889999999999988887765  3469999999999999999998766532 488999998763220     2468999


Q ss_pred             EEecc------chhhhc-----CCH-------HHHHHHHHHHHhccCCCcEEEEEec
Q 021467          109 VCCFQ------HLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       109 V~~~~------~lh~~~-----~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |++..      .++..-     .+.       .....+|.++.++|||||+++.++.
T Consensus       191 Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          191 ILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             EEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             EEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            99731      122100     111       2246789999999999999998855

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.12  E-value=5.6e-10  Score=104.64  Aligned_cols=125  Identities=12%  Similarity=0.057  Sum_probs=96.1

Q ss_pred             HHHHHHHH-hcCCCCEEEEECCCCCccHHHHHHcCC---------------------------------------CeEEE
Q 021467           20 AKTALIKI-YSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (312)
Q Consensus        20 vk~~li~~-~~~~~~~VLDlGCG~G~~l~~~~~~~~---------------------------------------~~v~g   59 (312)
                      +...++.. -..++..|||.+||+|..+...+....                                       .+++|
T Consensus       182 LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          182 MAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            34444433 345778999999999987766543211                                       36999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC-
Q 021467           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (312)
Q Consensus        60 iDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp-  138 (312)
                      +|+++.|++.|+++....+....+++.++|+.+...       ..+||+|+++-..+.-+.+.+.+..+.+.+.+.||+ 
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~  334 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPL  334 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999999887765569999999877543       358999999966554456677888888888888877 


Q ss_pred             -CcEEEEEecChhH
Q 021467          139 -GGYFLGITPDSST  151 (312)
Q Consensus       139 -GG~~i~~~p~~~~  151 (312)
                       ||.+.+.+++.+.
T Consensus       335 ~g~~~~iit~~~~l  348 (384)
T 3ldg_A          335 KTWSQFILTNDTDF  348 (384)
T ss_dssp             TTSEEEEEESCTTH
T ss_pred             CCcEEEEEECCHHH
Confidence             9999999998753

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.12  E-value=1.6e-10  Score=110.44  Aligned_cols=112  Identities=14%  Similarity=0.054  Sum_probs=82.2

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +...|+++|+|+.+++.++++.+..+.. ++.++++|+.....     ..+++||
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~-----~~~~~FD  177 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP-----HFSGFFD  177 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH-----HHTTCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh-----hccccCC
Confidence            47899999999999988877764  3469999999999999999998876643 37888888654221     0247899


Q ss_pred             EEEeccc---hhhhcCC---------------HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQH---LQMCFET---------------EERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~---lh~~~~~---------------~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|++...   ....-.+               ......+|.++.++|||||+++.++.
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9997432   1100001               12335889999999999999998755

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.12  E-value=4.8e-10  Score=101.72  Aligned_cols=79  Identities=19%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++....+. .+++++++|+...++        .+||+
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~--------~~~D~  109 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF--------PKFDV  109 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC--------CCCSE
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc--------ccCCE
Confidence            347789999999999888877665 45999999999999999998865432 348999999877543        47999


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |++....+.
T Consensus       110 Vv~n~py~~  118 (299)
T 2h1r_A          110 CTANIPYKI  118 (299)
T ss_dssp             EEEECCGGG
T ss_pred             EEEcCCccc
Confidence            999877665

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.10  E-value=2.4e-10  Score=107.26  Aligned_cols=125  Identities=16%  Similarity=0.142  Sum_probs=92.8

Q ss_pred             HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCC---------------------------------------CeEEE
Q 021467           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (312)
Q Consensus        20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~---------------------------------------~~v~g   59 (312)
                      +...++... ..++.+|||++||+|..+...+....                                       .+|+|
T Consensus       183 lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  262 (385)
T 3ldu_A          183 LAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG  262 (385)
T ss_dssp             HHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred             HHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence            444444332 34678999999999987776544311                                       47999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC-
Q 021467           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (312)
Q Consensus        60 iDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp-  138 (312)
                      +|+++.|++.|+++....+....++|.++|+.+...       ..+||+|+++-....-..+.+.+..+.+.+.+.||+ 
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            999999999999999877655569999999877543       368999999776433223355677788888888877 


Q ss_pred             -CcEEEEEecChhH
Q 021467          139 -GGYFLGITPDSST  151 (312)
Q Consensus       139 -GG~~i~~~p~~~~  151 (312)
                       ||.+++.+++...
T Consensus       336 ~g~~~~iit~~~~l  349 (385)
T 3ldu_A          336 KNWSYYLITSYEDF  349 (385)
T ss_dssp             BSCEEEEEESCTTH
T ss_pred             CCCEEEEEECCHHH
Confidence             9999999888653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.10  E-value=8.6e-10  Score=104.80  Aligned_cols=109  Identities=21%  Similarity=0.089  Sum_probs=80.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++.+.++..  ++|+++|+.+...        .+||+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~--------~~fD~  356 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV--------KGFDT  356 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC--------TTCSE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc--------cCCCE
Confidence            467789999999999888877665 459999999999999999998877654  8999999977432        27999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      |++.....-  .    ...+++.+. .|+|||++++++ |...+.+.+
T Consensus       357 Vv~dPPr~g--~----~~~~~~~l~-~l~p~givyvsc-~p~tlarDl  396 (425)
T 2jjq_A          357 VIVDPPRAG--L----HPRLVKRLN-REKPGVIVYVSC-NPETFARDV  396 (425)
T ss_dssp             EEECCCTTC--S----CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHH
T ss_pred             EEEcCCccc--h----HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHH
Confidence            998764221  1    123444444 489999988874 555554433

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.08  E-value=3.5e-10  Score=106.41  Aligned_cols=125  Identities=18%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             HHHHHHHH-hcCCCCEEEEECCCCCccHHHHHHcCC---------------------------------------CeEEE
Q 021467           20 AKTALIKI-YSHPYVTVCDLYCGAGVDVDKWETALI---------------------------------------ANYIG   59 (312)
Q Consensus        20 vk~~li~~-~~~~~~~VLDlGCG~G~~l~~~~~~~~---------------------------------------~~v~g   59 (312)
                      +...++.. -..++..|||.+||+|..+...+....                                       .+++|
T Consensus       189 lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G  268 (393)
T 3k0b_A          189 MAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG  268 (393)
T ss_dssp             HHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence            34444433 234678999999999987765543211                                       36999


Q ss_pred             EeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC-
Q 021467           60 IDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-  138 (312)
Q Consensus        60 iDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp-  138 (312)
                      +|+++.|++.|+++....+....+++.++|+.+...       ..+||+|+++-..+.-..+.+.+..+.+.+.+.||+ 
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~  341 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRM  341 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcC
Confidence            999999999999999887755568999999877543       358999999955332223345566777777777766 


Q ss_pred             -CcEEEEEecChhH
Q 021467          139 -GGYFLGITPDSST  151 (312)
Q Consensus       139 -GG~~i~~~p~~~~  151 (312)
                       ||.+++.+++...
T Consensus       342 ~g~~~~iit~~~~l  355 (393)
T 3k0b_A          342 PTWSVYVLTSYELF  355 (393)
T ss_dssp             TTCEEEEEECCTTH
T ss_pred             CCCEEEEEECCHHH
Confidence             9999999888753

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.07  E-value=1.9e-09  Score=102.67  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=80.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++.. ..+|+|+|+|+.+++.|+++.+.++.. ++.|+++|+.+...  .++..+++||+|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~--~~~~~~~~fD~V  360 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVT--KQPWAKNGFDKV  360 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCS--SSGGGTTCCSEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhh--hhhhhcCCCCEE
Confidence            46789999999999888887665 569999999999999999998776543 59999999976311  001135689999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      ++.....-       ...+++.+.+ ++|+++++++ .+...+...+
T Consensus       361 v~dPPr~g-------~~~~~~~l~~-~~p~~ivyvs-c~p~tlard~  398 (433)
T 1uwv_A          361 LLDPARAG-------AAGVMQQIIK-LEPIRIVYVS-CNPATLARDS  398 (433)
T ss_dssp             EECCCTTC-------CHHHHHHHHH-HCCSEEEEEE-SCHHHHHHHH
T ss_pred             EECCCCcc-------HHHHHHHHHh-cCCCeEEEEE-CChHHHHhhH
Confidence            98764332       1134444443 7898877765 4555554433

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.05  E-value=2.2e-10  Score=102.04  Aligned_cols=100  Identities=10%  Similarity=-0.001  Sum_probs=76.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--C-CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--R-KNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~--~-~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +...+|||||||+|+.+..+++.+ .+++++|+++.+++.|++++...  + ...+++++.+|+...        . ++|
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~--------~-~~f  140 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD--------I-KKY  140 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--------C-CCE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--------H-hhC
Confidence            355799999999998888777665 89999999999999998875321  0 112488888887552        1 679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|++...     .    ...+++.+.++|+|||++++...+
T Consensus       141 D~Ii~d~~-----d----p~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          141 DLIFCLQE-----P----DIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             EEEEESSC-----C----CHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CEEEECCC-----C----hHHHHHHHHHhcCCCcEEEEEcCC
Confidence            99998642     2    123899999999999999987443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.05  E-value=2.3e-10  Score=109.46  Aligned_cols=112  Identities=18%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--------------CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCch
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENF   95 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--------------~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~   95 (312)
                      ++.+|||.|||+|+.+..+...              ...+++|+|+++.+++.|+.+....+... .+.+.++|....+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            5679999999999988766543              23579999999999999998876554321 46788999876543


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCC-------------HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFET-------------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~-------------~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                             ..+||+|+++..++.....             ......+++.+.++|||||++.+++|+.
T Consensus       251 -------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          251 -------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             -------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             -------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence                   3489999998665532110             0112478999999999999999998865

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.03  E-value=4.4e-10  Score=106.19  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++.+|||+|||+|..+..+++.  ...+++|+|+++.+++.|      .    ++.++++|+....       ..++||+
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------~----~~~~~~~D~~~~~-------~~~~fD~  101 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------P----WAEGILADFLLWE-------PGEAFDL  101 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------T----TEEEEESCGGGCC-------CSSCEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------C----CCcEEeCChhhcC-------ccCCCCE
Confidence            5679999999999888877764  456999999999999877      1    2789999986643       2468999


Q ss_pred             EEeccchhhhcC--------CHHH-----------------HHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQHLQMCFE--------TEER-----------------ARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~lh~~~~--------~~~~-----------------~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+++-.....-.        ..+.                 ...+++.+.++|+|||++++.+|+.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            999643221100        0111                 2267999999999999999998875

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.03  E-value=3.8e-09  Score=95.48  Aligned_cols=79  Identities=14%  Similarity=0.018  Sum_probs=65.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..++.. ..+|+|+|+++.+++.+++++....   +++++++|+...++      ++.+||+
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~~---~v~vi~gD~l~~~~------~~~~fD~  117 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELYN---NIEIIWGDALKVDL------NKLDFNK  117 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHCS---SEEEEESCTTTSCG------GGSCCSE
T ss_pred             CCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccCC---CeEEEECchhhCCc------ccCCccE
Confidence            347889999999999888877766 4699999999999999999986432   38999999988766      4467999


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+++...+.
T Consensus       118 Iv~NlPy~i  126 (295)
T 3gru_A          118 VVANLPYQI  126 (295)
T ss_dssp             EEEECCGGG
T ss_pred             EEEeCcccc
Confidence            999887665

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.01  E-value=1.8e-09  Score=101.03  Aligned_cols=106  Identities=9%  Similarity=-0.018  Sum_probs=81.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---------------CCCceEEEEEcCCCCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---------------RKNFIAEFFEADPCAEN   94 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~---------------~~~~~~~f~~~D~~~~~   94 (312)
                      ++.+|||+|||+|.....++.. +..+|+++|+++.+++.|+++.+.+               +.. .++++++|+....
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            6789999999999888887776 5568999999999999999998877               432 3889999875421


Q ss_pred             hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467           95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus        95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      .     ....+||+|++.- ...       ...++..+.+.|||||.++++..+..
T Consensus       126 ~-----~~~~~fD~I~lDP-~~~-------~~~~l~~a~~~lk~gG~l~vt~td~~  168 (378)
T 2dul_A          126 A-----ERHRYFHFIDLDP-FGS-------PMEFLDTALRSAKRRGILGVTATDGA  168 (378)
T ss_dssp             H-----HSTTCEEEEEECC-SSC-------CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             H-----hccCCCCEEEeCC-CCC-------HHHHHHHHHHhcCCCCEEEEEeecch
Confidence            1     1135799999653 111       35678888899999999998865543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.95  E-value=4.5e-09  Score=98.04  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc--------
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK--------  102 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~--------  102 (312)
                      .+.+|||+|||+|..+..++. ...+|+|+|+|+.+++.|+++.+.++. .+++|+++|+.+..  ..+...        
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~--~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFT--QAMNGVREFNRLQG  288 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHH--HHHSSCCCCTTGGG
T ss_pred             CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHH--HHHhhccccccccc
Confidence            467899999999988876654 556999999999999999999887664 35899999985421  111100        


Q ss_pred             ----CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          103 ----ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       103 ----~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                          ..+||+|++...-.          .+...+.+.|+++|.++....+...+.+.+.
T Consensus       289 ~~~~~~~fD~Vv~dPPr~----------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~  337 (369)
T 3bt7_A          289 IDLKSYQCETIFVDPPRS----------GLDSETEKMVQAYPRILYISCNPETLCKNLE  337 (369)
T ss_dssp             SCGGGCCEEEEEECCCTT----------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred             cccccCCCCEEEECcCcc----------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence                13799998765322          1234455667799999988888877655443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.94  E-value=2.6e-09  Score=100.16  Aligned_cols=107  Identities=15%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhh-hcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQ-EKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~-~~f~~~D~~~~~~~~~~~-~~~~~f  106 (312)
                      ++.+|||++||+|.....++..  +..+|+++|+++.+++.++++.+.++...+ ++++++|+...     +. ...++|
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~-----l~~~~~~~f  126 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF-----LRKEWGFGF  126 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH-----HHSCCSSCE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH-----HHHhhCCCC
Confidence            5789999999999888877764  346899999999999999999998876555 88999987541     11 123579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      |+|++.-   +  .+   ...++..+.+.|+|||+++++.-+..
T Consensus       127 D~V~lDP---~--g~---~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          127 DYVDLDP---F--GT---PVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             EEEEECC---S--SC---CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             cEEEECC---C--cC---HHHHHHHHHHHhCCCCEEEEEecchh
Confidence            9999876   2  11   24578888899999999998865544

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.93  E-value=1.5e-09  Score=97.88  Aligned_cols=97  Identities=15%  Similarity=0.018  Sum_probs=68.0

Q ss_pred             cCCCCEEEEECCCC------CccHHHHHH-cC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEE-EEcCCCCCchhhhh
Q 021467           29 SHPYVTVCDLYCGA------GVDVDKWET-AL-IANYIGIDVATSGIGEARDTWENQRKNFIAEF-FEADPCAENFETQM   99 (312)
Q Consensus        29 ~~~~~~VLDlGCG~------G~~l~~~~~-~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f-~~~D~~~~~~~~~~   99 (312)
                      ++++.+|||||||+      |.  ..++. .+ ..+|+|+|+|+. +         .    ++++ +++|+.+.++    
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------~----~v~~~i~gD~~~~~~----  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------S----DADSTLIGDCATVHT----  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------C----SSSEEEESCGGGCCC----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------C----CCEEEEECccccCCc----
Confidence            45788999999955      64  22222 23 469999999998 1         1    2678 9999876543    


Q ss_pred             hhcCCceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          100 QEKANQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                         .++||+|++....+..       ....+..+.+++++.++|||||.|++.+..
T Consensus       121 ---~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~  173 (290)
T 2xyq_A          121 ---ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  173 (290)
T ss_dssp             ---SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ---cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence               3689999997542210       111334568999999999999999997543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.91  E-value=1.8e-10  Score=101.39  Aligned_cols=103  Identities=10%  Similarity=0.032  Sum_probs=73.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~~fD~  108 (312)
                      .++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++...   ..+++++++|+.+.++      + +++| .
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~~~------~~~~~f-~   96 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL---NTRVTLIHQDILQFQF------PNKQRY-K   96 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT---CSEEEECCSCCTTTTC------CCSSEE-E
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc---CCceEEEECChhhcCc------ccCCCc-E
Confidence            467899999999999888887765 6999999999999998887652   2358999999987654      3 3678 5


Q ss_pred             EEeccchhhhcCCHHHHHHHH--------------HHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLL--------------QNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l--------------~~i~~~LkpGG~~i~~~  146 (312)
                      |+++...+.   +......++              +.+.++|+|||.+.+.+
T Consensus        97 vv~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           97 IVGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            555543322   122222222              55778888888766543

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.91  E-value=2.5e-08  Score=88.23  Aligned_cols=86  Identities=12%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      +++.. ..++.+|||||||+|..+..++... .+|+|+|+++.|++.+++++...   .+++++++|+.+.++....  .
T Consensus        21 iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~--~   94 (255)
T 3tqs_A           21 IVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQ---KNITIYQNDALQFDFSSVK--T   94 (255)
T ss_dssp             HHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTC---TTEEEEESCTTTCCGGGSC--C
T ss_pred             HHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhC---CCcEEEEcchHhCCHHHhc--c
Confidence            33433 4578899999999998888877655 69999999999999999998652   2389999999987763211  1


Q ss_pred             CCceeEEEeccchh
Q 021467          103 ANQADLVCCFQHLQ  116 (312)
Q Consensus       103 ~~~fD~V~~~~~lh  116 (312)
                      .++|| |+++...+
T Consensus        95 ~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           95 DKPLR-VVGNLPYN  107 (255)
T ss_dssp             SSCEE-EEEECCHH
T ss_pred             CCCeE-EEecCCcc
Confidence            35788 55555444

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.88  E-value=1.2e-08  Score=91.09  Aligned_cols=89  Identities=16%  Similarity=0.067  Sum_probs=68.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++ +|||||||+|..+..++..+ .+|+|+|+++.|++.+++++...    +++++++|+...++..     ...+|.
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~~----~v~vi~~D~l~~~~~~-----~~~~~~  113 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSGL----PVRLVFQDALLYPWEE-----VPQGSL  113 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTTS----SEEEEESCGGGSCGGG-----SCTTEE
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCCC----CEEEEECChhhCChhh-----ccCccE
Confidence            4567 99999999998888877765 68999999999999999988642    3899999998876621     136899


Q ss_pred             EEeccchhhhcCCHHHHHHHHHH
Q 021467          109 VCCFQHLQMCFETEERARRLLQN  131 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~  131 (312)
                      |+++...+.   +.+-...++..
T Consensus       114 iv~NlPy~i---ss~il~~ll~~  133 (271)
T 3fut_A          114 LVANLPYHI---ATPLVTRLLKT  133 (271)
T ss_dssp             EEEEECSSC---CHHHHHHHHHH
T ss_pred             EEecCcccc---cHHHHHHHhcC
Confidence            988876554   34445555554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.86  E-value=1.9e-08  Score=88.43  Aligned_cols=77  Identities=8%  Similarity=-0.013  Sum_probs=58.5

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+|||+|..+..++... .+|+|+|+|+.+++.|+++....   .+++++++|+.+.++.     ....|+ |
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~-----~~~~~~-v   98 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFP-----KNQSYK-I   98 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCC-----SSCCCE-E
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCcc-----cCCCeE-E
Confidence            467899999999998888877665 69999999999999999987642   2489999998776551     124564 5


Q ss_pred             Eeccchh
Q 021467          110 CCFQHLQ  116 (312)
Q Consensus       110 ~~~~~lh  116 (312)
                      +++...+
T Consensus        99 v~nlPy~  105 (244)
T 1qam_A           99 FGNIPYN  105 (244)
T ss_dssp             EEECCGG
T ss_pred             EEeCCcc
Confidence            5555444

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.84  E-value=2.1e-08  Score=91.20  Aligned_cols=114  Identities=11%  Similarity=-0.019  Sum_probs=79.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|+.+..++..  +..+|+++|+++.+++.++++.+..+. .++.++++|+.......  . ...+||
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~--~-~~~~fD  176 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSD--P-RYHEVH  176 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTC--G-GGTTEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccc--c-ccCCCC
Confidence            47889999999999988877764  446999999999999999999987653 24889999986543210  0 115799


Q ss_pred             EEEeccc------hhhh----------cCCH----HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQH------LQMC----------FETE----ERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~------lh~~----------~~~~----~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .|++...      ++.-          -...    .....+|.++.++|+ ||+++.++..
T Consensus       177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            9997321      1110          0111    123467888888887 9998876544

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.82  E-value=8.4e-09  Score=100.86  Aligned_cols=114  Identities=16%  Similarity=0.112  Sum_probs=82.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---C----------------CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---L----------------IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFE   87 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~----------------~~~v~giDis~~~i~~a~~r~~~~~~~~----~~~f~~   87 (312)
                      ++.+|||.|||+|+.+......   .                ...++|+|+++.+++.|+.+....+...    ...+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            5679999999999988766542   1                1379999999999999998876554322    156788


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccchhhhcCC----------HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFET----------EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        88 ~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~----------~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|....+..     ...+||+|+++-.+......          ......++..+.+.|||||++.+++|++
T Consensus       249 gDtL~~~~~-----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          249 GNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             SCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CCCcccccc-----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCc
Confidence            887653321     34789999998665432110          1122478999999999999999998876

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.79  E-value=2.7e-08  Score=100.14  Aligned_cols=128  Identities=13%  Similarity=0.027  Sum_probs=87.6

Q ss_pred             HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc-------------------------------------------CCC
Q 021467           20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-------------------------------------------LIA   55 (312)
Q Consensus        20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-------------------------------------------~~~   55 (312)
                      +...++... ..++..|||.+||+|..+...+..                                           ...
T Consensus       178 LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          178 LAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            333444332 346789999999999877654432                                           114


Q ss_pred             eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHH---
Q 021467           56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV---  132 (312)
Q Consensus        56 ~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i---  132 (312)
                      .++|+|+++.|++.|+.+....+....++|.++|+.+....    ...++||+|+++-....-+.+......+.+.+   
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~  333 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI  333 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----cccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence            79999999999999999998877666689999998764320    01238999999854332223344455555444   


Q ss_pred             HhccCCCcEEEEEecChhH
Q 021467          133 SSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       133 ~~~LkpGG~~i~~~p~~~~  151 (312)
                      .+.+.|||.+++.+++..-
T Consensus       334 lk~~~~g~~~~ilt~~~~l  352 (703)
T 3v97_A          334 MKNQFGGWNLSLFSASPDL  352 (703)
T ss_dssp             HHHHCTTCEEEEEESCHHH
T ss_pred             HHhhCCCCeEEEEeCCHHH
Confidence            4555689999999998754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.75  E-value=1.2e-07  Score=85.08  Aligned_cols=90  Identities=10%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             HHHHHh-cCCCCEEEEECCCCCccHHHHHHcCC---CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           23 ALIKIY-SHPYVTVCDLYCGAGVDVDKWETALI---ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        23 ~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~---~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      .+++.. ..++.+|||||||+|..+..++....   .+|+|+|+++.|++.++++. .    .+++++++|+.+.++...
T Consensus        33 ~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~----~~v~~i~~D~~~~~~~~~  107 (279)
T 3uzu_A           33 AIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G----ELLELHAGDALTFDFGSI  107 (279)
T ss_dssp             HHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G----GGEEEEESCGGGCCGGGG
T ss_pred             HHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C----CCcEEEECChhcCChhHh
Confidence            344443 45788999999999988888876543   23999999999999999984 2    238999999988776432


Q ss_pred             hhhcCCceeEEEeccchhh
Q 021467           99 MQEKANQADLVCCFQHLQM  117 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~  117 (312)
                      ........+.|+++...+.
T Consensus       108 ~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          108 ARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             SCSSSSCCEEEEEECCHHH
T ss_pred             cccccCCceEEEEccCccc
Confidence            2100012345666654443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.73  E-value=7.7e-09  Score=91.76  Aligned_cols=82  Identities=16%  Similarity=0.060  Sum_probs=60.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCCh-------HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT-------SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~-------~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      ++.+|||+|||+|.++..++..+ .+|+|+|+|+       ++++.|+++.+.++...+++++++|+.+.  ...+  ++
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g-~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~--l~~~--~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQ--MPAL--VK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTT-CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHH--HHHH--HH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhC-CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHH--HHhh--hc
Confidence            56899999999999888887764 5899999999       99999988765443222389999997542  1111  22


Q ss_pred             --CceeEEEeccchhh
Q 021467          104 --NQADLVCCFQHLQM  117 (312)
Q Consensus       104 --~~fD~V~~~~~lh~  117 (312)
                        ++||+|++...+++
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence              68999999765444

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.73  E-value=5.3e-08  Score=85.89  Aligned_cols=79  Identities=11%  Similarity=0.026  Sum_probs=59.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||+|||+|..+..++..+..+|+|+|+++.+++.++++ ..    .+++++++|+...++...    .+.+ .
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~~----~~v~~i~~D~~~~~~~~~----~~~~-~   98 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-GD----ERLEVINEDASKFPFCSL----GKEL-K   98 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-CC----TTEEEECSCTTTCCGGGS----CSSE-E
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-cC----CCeEEEEcchhhCChhHc----cCCc-E
Confidence            347889999999999888887766557999999999999999887 32    248999999998776321    1234 5


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+++...+.
T Consensus        99 vv~NlPy~i  107 (249)
T 3ftd_A           99 VVGNLPYNV  107 (249)
T ss_dssp             EEEECCTTT
T ss_pred             EEEECchhc
Confidence            666555443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.71  E-value=1.9e-08  Score=98.28  Aligned_cols=113  Identities=14%  Similarity=0.022  Sum_probs=79.4

Q ss_pred             CCEEEEECCCCCccHHHHHHc--------C--------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           32 YVTVCDLYCGAGVDVDKWETA--------L--------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~--------~--------~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      ..+|||.|||+|+++......        .        ...++|+|+++.++..|+.++...+...++.+.++|....+.
T Consensus       245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~  324 (544)
T 3khk_A          245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ  324 (544)
T ss_dssp             SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred             CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence            349999999999887765321        0        348999999999999999988766543333336777655432


Q ss_pred             hhhhhhcCCceeEEEeccchhhh-cC-----------------------C-HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMC-FE-----------------------T-EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~-~~-----------------------~-~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .     ...+||+|+++-.+... ..                       . ....-.+++.+.+.|+|||++.+.+|+.
T Consensus       325 ~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          325 H-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             C-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             c-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            1     34789999997554320 00                       0 0011258999999999999999999886

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.67  E-value=1.7e-07  Score=91.47  Aligned_cols=116  Identities=18%  Similarity=0.099  Sum_probs=84.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~----~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++.+|||.|||+|+.+......    +...++|+|+++.++..|+.+....+.. ..+.+.++|....+...   ....+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~---~~~~~  297 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT---QEPTN  297 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC---SSCCC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc---ccccc
Confidence            5679999999999988877654    2468999999999999999887665543 24788999987652100   03578


Q ss_pred             eeEEEeccchhhhcCCH-------------------HHHHHHHHHHHhccC-CCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETE-------------------ERARRLLQNVSSLLK-PGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~-------------------~~~~~~l~~i~~~Lk-pGG~~i~~~p~~  149 (312)
                      ||+|+++-.+.......                   ..--.++..+.+.|+ |||++.+.+|++
T Consensus       298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence            99999975432111000                   001248999999999 999999999887

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.67  E-value=5e-08  Score=88.36  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=62.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~f  106 (312)
                      ..++.+|||+|||+|+.+..++.. +..+|+|+|+|+.|++.|+++....+  .++.++++|+...+.  .+.. ...+|
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~--~l~~~g~~~~   99 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADF--LLKTLGIEKV   99 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHH--HHHHTTCSCE
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHH--HHHhcCCCCC
Confidence            347889999999999998888776 35699999999999999999987654  358999999765321  1111 11579


Q ss_pred             eEEEeccc
Q 021467          107 DLVCCFQH  114 (312)
Q Consensus       107 D~V~~~~~  114 (312)
                      |.|++...
T Consensus       100 D~Vl~D~g  107 (301)
T 1m6y_A          100 DGILMDLG  107 (301)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEcCc
Confidence            99987653

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.64  E-value=8e-07  Score=82.67  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             CCEEEEECCCCCccHHHHHHc----------------CCCeEEEEeCChHHHHHHHHHHHhcCC-----------CceEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETA----------------LIANYIGIDVATSGIGEARDTWENQRK-----------NFIAE   84 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~----------------~~~~v~giDis~~~i~~a~~r~~~~~~-----------~~~~~   84 (312)
                      ..+|+|+|||+|..+......                +.-+|..-|+........=+.+.....           ..+..
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            478999999999876655221                123566667665554433332221100           00011


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCC----------------------------------HHHHHHHHH
Q 021467           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----------------------------------EERARRLLQ  130 (312)
Q Consensus        85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~----------------------------------~~~~~~~l~  130 (312)
                      |+.+...+  +...+ .++++||+|++..++||+-.-                                  ..+...+|+
T Consensus       133 f~~gvpgS--Fy~rl-fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          133 FVAGVPGS--FYRRL-FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             EEEEEESC--TTSCC-SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChh--hhccc-CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            22222111  00001 157899999999999994211                                  126677899


Q ss_pred             HHHhccCCCcEEEEEecC
Q 021467          131 NVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       131 ~i~~~LkpGG~~i~~~p~  148 (312)
                      ..++.|+|||++++++..
T Consensus       210 ~ra~eL~pGG~mvl~~~g  227 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVCLG  227 (374)
T ss_dssp             HHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEec
Confidence            999999999999999553

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.63  E-value=2e-07  Score=82.26  Aligned_cols=81  Identities=9%  Similarity=-0.090  Sum_probs=58.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCe--EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~--v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..++.+|||||||+|..+. +.. . .+  |+|+|+++.|++.++++....   .+++++++|+...++...... .+..
T Consensus        19 ~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~~~~~~-~~~~   91 (252)
T 1qyr_A           19 PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEK-MGQP   91 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHH-HTSC
T ss_pred             CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHHHhhcc-cCCc
Confidence            4577899999999998888 543 3 46  999999999999999887542   248999999988766332110 1235


Q ss_pred             eEEEeccchh
Q 021467          107 DLVCCFQHLQ  116 (312)
Q Consensus       107 D~V~~~~~lh  116 (312)
                      |.|+++...+
T Consensus        92 ~~vvsNlPY~  101 (252)
T 1qyr_A           92 LRVFGNLPYN  101 (252)
T ss_dssp             EEEEEECCTT
T ss_pred             eEEEECCCCC
Confidence            6777776543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.61  E-value=9.9e-08  Score=94.25  Aligned_cols=102  Identities=15%  Similarity=0.101  Sum_probs=74.3

Q ss_pred             CCEEEEECCCCCccHHHHHHc---CCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           32 YVTVCDLYCGAGVDVDKWETA---LIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~---~~~--~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ...|||+|||+|-.....+++   ...  +|++|+-|+ +...|++..+.++...+++++++|+.+..+       +.++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~L-------PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVA-------PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCC-------SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccC-------Cccc
Confidence            357999999999653333333   222  689999997 556777777777777789999999998776       4789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      |+|++-. |.+++..+. +...+....+.|||||+++
T Consensus       430 DIIVSEw-MG~fLl~E~-mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          430 DIIVSEL-LGSFADNEL-SPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             EEEECCC-CBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred             CEEEEEc-CcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence            9999843 223222233 3367888899999999974

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.60  E-value=1.4e-07  Score=83.44  Aligned_cols=122  Identities=18%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +++++.+|||||||+|+.+...+.. +...++|+|++.++......   .......+..+..++....+      ...+|
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~---~~~~g~~ii~~~~~~dv~~l------~~~~~  141 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN---VQSLGWNIITFKDKTDIHRL------EPVKC  141 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC---CCBTTGGGEEEECSCCTTTS------CCCCC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc---cCcCCCCeEEEeccceehhc------CCCCc
Confidence            4567889999999999887766554 45678899998543110000   00001123445555533333      45789


Q ss_pred             eEEEeccchhhhcC-CHHHHH--HHHHHHHhccCCC-cEEEEEecC--hh---HHHHHHHHh
Q 021467          107 DLVCCFQHLQMCFE-TEERAR--RLLQNVSSLLKPG-GYFLGITPD--SS---TIWAKYQKN  159 (312)
Q Consensus       107 D~V~~~~~lh~~~~-~~~~~~--~~l~~i~~~LkpG-G~~i~~~p~--~~---~l~~~~~~~  159 (312)
                      |+|+|..+.+ .-. ..+..+  .+|+.+.++|+|| |.|++-+-.  ..   .+++.+++.
T Consensus       142 DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~  202 (277)
T 3evf_A          142 DTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRR  202 (277)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             cEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHh
Confidence            9999988665 111 122222  3578889999999 999999766  43   344444443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.58  E-value=3.8e-07  Score=91.56  Aligned_cols=115  Identities=14%  Similarity=0.066  Sum_probs=76.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC----CCeEEEEeCChHHHHHHHHHHHhc--CC--Cce-EEEEEcCCCCCchhhhhh
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQ--RK--NFI-AEFFEADPCAENFETQMQ  100 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~----~~~v~giDis~~~i~~a~~r~~~~--~~--~~~-~~f~~~D~~~~~~~~~~~  100 (312)
                      .++.+|||.|||+|+.+..++...    ..+++|+|+++.+++.|+.+....  ..  ... ..+...|......     
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----  394 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----  394 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----
Confidence            357899999999999888776542    247999999999999995444321  11  111 2344444433211     


Q ss_pred             hcCCceeEEEeccchhhhcCCHH-------------------------HHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          101 EKANQADLVCCFQHLQMCFETEE-------------------------RARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~-------------------------~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ....+||+|+++-..-.......                         ....+++.+.+.|+|||++.+.+|++
T Consensus       395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s  468 (878)
T 3s1s_A          395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ  468 (878)
T ss_dssp             GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred             cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence            03478999999766411011111                         13347888999999999999999987

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.57  E-value=7.2e-08  Score=90.73  Aligned_cols=79  Identities=16%  Similarity=0.063  Sum_probs=61.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~--~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++.+..  +. .+++++++|+.+. +. ..  .+.+||
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~-L~-~~--~~~~fD  165 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEY-LP-LI--KTFHPD  165 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGS-HH-HH--HHHCCS
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHh-hh-hc--cCCCce
Confidence            35889999999999887776554 459999999999999999998865  43 4699999998763 11 01  135799


Q ss_pred             EEEeccc
Q 021467          108 LVCCFQH  114 (312)
Q Consensus       108 ~V~~~~~  114 (312)
                      +|++.-.
T Consensus       166 vV~lDPP  172 (410)
T 3ll7_A          166 YIYVDPA  172 (410)
T ss_dssp             EEEECCE
T ss_pred             EEEECCC
Confidence            9999653

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.55  E-value=9.4e-07  Score=75.20  Aligned_cols=104  Identities=5%  Similarity=-0.109  Sum_probs=72.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCc-------------h
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAEN-------------F   95 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~-------------~   95 (312)
                      +..+|||+|||  ..+..++.....+|+.+|.+++..+.|++.++..+.  ..+++++.+|+....             +
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            45799999995  333333333257999999999999999999988775  567999999976421             1


Q ss_pred             hh---hh-hh-cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           96 ET---QM-QE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        96 ~~---~~-~~-~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..   .+ .. ..++||+|++-....         ...+..+.+.|+|||++++-
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~k~---------~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGRFR---------VGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSSSH---------HHHHHHHHHHCSSCEEEEET
T ss_pred             HHHhhhhhccccCCCCCEEEEeCCCc---------hhHHHHHHHhcCCCeEEEEe
Confidence            10   00 01 137899999877321         24455566899999999654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.50  E-value=1.8e-07  Score=92.51  Aligned_cols=108  Identities=16%  Similarity=0.055  Sum_probs=73.2

Q ss_pred             CCEEEEECCCCCccHHHHHHc----C----------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           32 YVTVCDLYCGAGVDVDKWETA----L----------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~----~----------~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      +..|||+|||+|-.....+.+    +          ..+|++||-++.++..++.+.. ++...+++++.+|+.+..+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999654322221    1          2389999999988876666654 455566999999998755410


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      . .....+.|+|++-.. .+ |...+....+|..+.+.|||||+++
T Consensus       489 ~-~~~~ekVDIIVSElm-Gs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          489 K-DRGFEQPDIIVSELL-GS-FGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             H-HTTCCCCSEEEECCC-BT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             c-cCCCCcccEEEEecc-cc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence            0 011578999998552 22 2223335568888899999999875

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.39  E-value=1.3e-06  Score=78.36  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .+...+||=||.|.|+.+..+++. +..+++.+||++..++.|++.+....    ...+++.+.+|....-     ....
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l-----~~~~  155 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV-----NQTS  155 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT-----SCSS
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH-----hhcc
Confidence            345679999999999988888776 56799999999999999998764311    1245899999987632     1245


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++||+|+.-..=.......---+.+++.++++|+|||+++...
T Consensus       156 ~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          156 QTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             CCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            7899999743210000000013678999999999999999763

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.38  E-value=3.1e-06  Score=78.41  Aligned_cols=126  Identities=13%  Similarity=-0.011  Sum_probs=84.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-------CCceEEEEEcCCCCCchhhhhhhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-------KNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~-------~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ++..+||=||.|.|+.+..+++.+..+++.+||+++.++.|++-+....       ...+++.+.+|+..  +.......
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~--fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP--VLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH--HHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH--HHHhhhhc
Confidence            3567999999999999998888777899999999999999998753211       11237788888654  11111123


Q ss_pred             CCceeEEEeccchhh------hcCCHHHHHHHHHHHHhccCCCcEEEEE--ecChhHHHHHHH
Q 021467          103 ANQADLVCCFQHLQM------CFETEERARRLLQNVSSLLKPGGYFLGI--TPDSSTIWAKYQ  157 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~------~~~~~~~~~~~l~~i~~~LkpGG~~i~~--~p~~~~l~~~~~  157 (312)
                      .++||+|+.-..-..      ......-.+.+++.+.++|+|||+++..  .|........+.
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~  344 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYE  344 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHH
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHH
Confidence            578999987531100      0011222478899999999999999864  454443333333

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.37  E-value=3.9e-07  Score=80.67  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=73.8

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++.++.+|||||||+|+.+...+.. +...++|+|++..+...+... ..  ....+.....++....+      +..++
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~--~g~~ii~~~~~~dv~~l------~~~~~  157 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT--LGWNLIRFKDKTDVFNM------EVIPG  157 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCCGGGS------CCCCC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc--CCCceEEeeCCcchhhc------CCCCc
Confidence            3568889999999999888766543 566899999987642222110 00  01122233333221122      45889


Q ss_pred             eEEEeccchhhhcC-CHHHHH--HHHHHHHhccCCC--cEEEEEecC--hh---HHHHHHHH
Q 021467          107 DLVCCFQHLQMCFE-TEERAR--RLLQNVSSLLKPG--GYFLGITPD--SS---TIWAKYQK  158 (312)
Q Consensus       107 D~V~~~~~lh~~~~-~~~~~~--~~l~~i~~~LkpG--G~~i~~~p~--~~---~l~~~~~~  158 (312)
                      |+|+|-.+.+ .-. ..+..+  .+|.-+.++|+||  |.|++-+-.  ..   .+++.+++
T Consensus       158 DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~  218 (282)
T 3gcz_A          158 DTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQL  218 (282)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             CEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHH
Confidence            9999987765 211 122222  3577888999999  999999776  43   34444444

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.35  E-value=1.6e-06  Score=80.10  Aligned_cols=110  Identities=15%  Similarity=0.097  Sum_probs=76.5

Q ss_pred             CCEEEEECCCCCccHHHHHHc-----------------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-----------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--   92 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-----------------~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--   92 (312)
                      ..+|+|+||++|..+......                 +.-+|+..|+.......+-+.+.......+..|+.+...+  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999755433221                 1247889999998888877776531100013455554333  


Q ss_pred             -CchhhhhhhcCCceeEEEeccchhhhcCC-----------------------------HHHHHHHHHHHHhccCCCcEE
Q 021467           93 -ENFETQMQEKANQADLVCCFQHLQMCFET-----------------------------EERARRLLQNVSSLLKPGGYF  142 (312)
Q Consensus        93 -~~~~~~~~~~~~~fD~V~~~~~lh~~~~~-----------------------------~~~~~~~l~~i~~~LkpGG~~  142 (312)
                       ..+      +++++|+|+++.++|++-.-                             ..+...+|+..++.|+|||++
T Consensus       132 ~rlf------p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~m  205 (359)
T 1m6e_X          132 GRLF------PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRM  205 (359)
T ss_dssp             SCCS------CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEE
T ss_pred             hccC------CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE
Confidence             233      67999999999999985220                             246678899999999999999


Q ss_pred             EEEec
Q 021467          143 LGITP  147 (312)
Q Consensus       143 i~~~p  147 (312)
                      ++++.
T Consensus       206 vl~~~  210 (359)
T 1m6e_X          206 VLTIL  210 (359)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99854

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.30  E-value=2.7e-06  Score=79.27  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=70.4

Q ss_pred             CCEEEEECCCCCccHHHHHHc------------------CCCeEEEEeCC-----------hHHHHHHHHHHHhcCCCce
Q 021467           32 YVTVCDLYCGAGVDVDKWETA------------------LIANYIGIDVA-----------TSGIGEARDTWENQRKNFI   82 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~------------------~~~~v~giDis-----------~~~i~~a~~r~~~~~~~~~   82 (312)
                      ..+|+|+|||+|..+..+...                  +.-+|+..|+.           +.+.+.+++.   .+....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            578999999999876654432                  12367788887           4333333221   111122


Q ss_pred             EEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCH-----------------------------------HHHHH
Q 021467           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETE-----------------------------------ERARR  127 (312)
Q Consensus        83 ~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~-----------------------------------~~~~~  127 (312)
                      ..|+.+...+  +...+- +++++|+|.++.++|++-.-.                                   .+...
T Consensus       130 ~~f~~gvpgS--Fy~rlf-p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~  206 (384)
T 2efj_A          130 SCLIGAMPGS--FYSRLF-PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTT  206 (384)
T ss_dssp             SEEEEECCSC--TTSCCS-CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecchh--hhhccC-CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHH
Confidence            4566665443  111111 579999999999999952211                                   13345


Q ss_pred             HHHHHHhccCCCcEEEEEecC
Q 021467          128 LLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       128 ~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|+..++.|+|||++++++..
T Consensus       207 FL~~Ra~eL~pGG~mvl~~~g  227 (384)
T 2efj_A          207 FLRIHSEELISRGRMLLTFIC  227 (384)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHhccCCeEEEEEec
Confidence            588889999999999999654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.27  E-value=3.7e-06  Score=77.82  Aligned_cols=115  Identities=17%  Similarity=-0.002  Sum_probs=79.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC-----CceEEEEEcCCCCCchhhhhhhcC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK-----NFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~-----~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .++.+|||+|+|.|+=+..++... ...++++|+++.-+...+++.+..+.     ...+.....|......     ...
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~-----~~~  221 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE-----LEG  221 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH-----HST
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch-----hcc
Confidence            478999999999999777776653 34799999999999988888765421     2347777777654221     135


Q ss_pred             CceeEEEeccchh----hhc---------CCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          104 NQADLVCCFQHLQ----MCF---------ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       104 ~~fD~V~~~~~lh----~~~---------~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +.||.|++-...-    ...         .+.       ....++|.+..++|||||+++-+|..-
T Consensus       222 ~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          222 DTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             TCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             ccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            7899998732210    000         011       234678999999999999999775543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.22  E-value=5.6e-07  Score=79.66  Aligned_cols=114  Identities=10%  Similarity=0.024  Sum_probs=70.0

Q ss_pred             CCC--CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------C-CCceEEEEEcCCCCCchhhhh
Q 021467           30 HPY--VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        30 ~~~--~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~-~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      .++  .+|||++||.|.+...++..+. +|+++|+++.+.+.+++..+..       + ...+++++++|+.+.     +
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~-----L  158 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----L  158 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-----S
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHH-----H
Confidence            356  8999999999999888877655 8999999998766555543211       1 112489999997541     1


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      +....+||+|++.-..+.  ....   .++++..+.|++.+   +..++.+.+.+...
T Consensus       159 ~~~~~~fDvV~lDP~y~~--~~~s---aavkk~~~~lr~l~---~~~~~~~~ll~~a~  208 (258)
T 2oyr_A          159 TDITPRPQVVYLDPMFPH--KQKS---ALVKKEMRVFQSLV---GPDLDADGLLEPAR  208 (258)
T ss_dssp             TTCSSCCSEEEECCCCCC--CCC--------HHHHHHHHHS---CCCTTGGGGHHHHH
T ss_pred             HhCcccCCEEEEcCCCCC--cccc---hHHHHHHHHHHHhh---cCCccHHHHHHHHH
Confidence            101246999999876554  2111   33444444554433   23666666665554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.13  E-value=2.6e-06  Score=68.18  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=57.7

Q ss_pred             CCCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||||||+|. .+..++......|+++|+++.+++                +++.|+++..+.     .-..||+
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~~~-----~Y~~~DL   92 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPRME-----IYRGAAL   92 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCCHH-----HHTTEEE
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCccc-----ccCCcCE
Confidence            456799999999994 556665434458999999987765                788999885542     1248999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |.+...       ..++...+.++++.+  |.-+++.
T Consensus        93 IYsirP-------P~El~~~i~~lA~~v--~adliI~  120 (153)
T 2k4m_A           93 IYSIRP-------PAEIHSSLMRVADAV--GARLIIK  120 (153)
T ss_dssp             EEEESC-------CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred             EEEcCC-------CHHHHHHHHHHHHHc--CCCEEEE
Confidence            965442       223444555555544  4556665

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.11  E-value=5.5e-06  Score=73.85  Aligned_cols=121  Identities=15%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++.++.+||||||++|+.+..++.. +...|+|+|++..+....... ..  ....+.....++....+      ...++
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~-~~--~~~~iv~~~~~~di~~l------~~~~~  148 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHM-QT--LGWNIVKFKDKSNVFTM------PTEPS  148 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB--TTGGGEEEECSCCTTTS------CCCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccc-cc--cCCceEEeecCceeeec------CCCCc
Confidence            4568899999999999988887764 556899999986431110000 00  00112222222211122      35789


Q ss_pred             eEEEeccchhhhcC-CHHH--HHHHHHHHHhccCCC-cEEEEEecC--hh---HHHHHHHH
Q 021467          107 DLVCCFQHLQMCFE-TEER--ARRLLQNVSSLLKPG-GYFLGITPD--SS---TIWAKYQK  158 (312)
Q Consensus       107 D~V~~~~~lh~~~~-~~~~--~~~~l~~i~~~LkpG-G~~i~~~p~--~~---~l~~~~~~  158 (312)
                      |+|+|..+.+ .-. ..+.  ...+|.-+.++|+|| |.|++-+-.  ..   .++..+++
T Consensus       149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~  208 (300)
T 3eld_A          149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQL  208 (300)
T ss_dssp             SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHH
T ss_pred             CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHH
Confidence            9999977655 111 1122  234577788999999 999999777  53   34444444

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.05  E-value=1.1e-05  Score=71.29  Aligned_cols=121  Identities=13%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             CCCEEEEECCCCCccHHHHHH--------cC-----CCeEEEEeCCh---HHHHH-----------HHHHHHh-------
Q 021467           31 PYVTVCDLYCGAGVDVDKWET--------AL-----IANYIGIDVAT---SGIGE-----------ARDTWEN-------   76 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~--------~~-----~~~v~giDis~---~~i~~-----------a~~r~~~-------   76 (312)
                      +..+|||+|||+|..+..++.        .+     ..+|+++|..+   +++..           |++..+.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            457999999999976654332        12     14899999876   55553           3443332       


Q ss_pred             ------cCCCceEEEEEcCCCCCchhhhhhh-cCCceeEEEec-cchhhhcCCHH-HHHHHHHHHHhccCCCcEEEEEec
Q 021467           77 ------QRKNFIAEFFEADPCAENFETQMQE-KANQADLVCCF-QHLQMCFETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        77 ------~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~-~~lh~~~~~~~-~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                            .....+++++.+|+.+. + ..+.. ....||+|+.- |+-.-   ..+ -...+++.+.++|+|||+|+.-+ 
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~-l-~~~~~~~~~~~D~iflD~fsp~~---~p~lw~~~~l~~l~~~L~pGG~l~tys-  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL-I-SQLDDSLNQKVDAWFLDGFAPAK---NPDMWTQNLFNAMARLARPGGTLATFT-  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH-G-GGSCGGGTTCEEEEEECSSCTTT---CGGGCCHHHHHHHHHHEEEEEEEEESC-
T ss_pred             hhheeccCCceEEEEEECcHHHH-H-hhcccccCCeEEEEEECCCCccc---ChhhcCHHHHHHHHHHcCCCcEEEEEe-
Confidence                  01124577888887552 1 11100 11379999984 32110   011 03578999999999999988433 


Q ss_pred             ChhHHHHHHH
Q 021467          148 DSSTIWAKYQ  157 (312)
Q Consensus       148 ~~~~l~~~~~  157 (312)
                      ....+.+.+.
T Consensus       214 aa~~vrr~L~  223 (257)
T 2qy6_A          214 SAGFVRRGLQ  223 (257)
T ss_dssp             CBHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            3345555444

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.99  E-value=3.8e-05  Score=69.84  Aligned_cols=58  Identities=17%  Similarity=0.069  Sum_probs=45.9

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~   92 (312)
                      .++..++|..||.|+++..++..  +..+|+|+|.++++++.|+ ++..    .++.+++++..+
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~----~Rv~lv~~nF~~  115 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDD----PRFSIIHGPFSA  115 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCC----TTEEEEESCGGG
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcC----CcEEEEeCCHHH
Confidence            57899999999999999988876  3469999999999999984 5421    237777776543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.95  E-value=4.3e-05  Score=74.36  Aligned_cols=116  Identities=15%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--------------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--------------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE   96 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--------------~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~   96 (312)
                      ++.+|+|-+||+|+++......              ....++|+|+++.+...|+-+.--++.. ...+..+|....+..
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-~~~I~~~dtL~~~~~  295 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-YPRIDPENSLRFPLR  295 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-CCEEECSCTTCSCGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-cccccccccccCchh
Confidence            5679999999999988755432              1236999999999999998776544422 135677887665442


Q ss_pred             hhhhhcCCceeEEEeccchhhh------------cCCHHHHHHHHHHHHhccC-------CCcEEEEEecCh
Q 021467           97 TQMQEKANQADLVCCFQHLQMC------------FETEERARRLLQNVSSLLK-------PGGYFLGITPDS  149 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~~~lh~~------------~~~~~~~~~~l~~i~~~Lk-------pGG~~i~~~p~~  149 (312)
                      ...  ...+||+|+++-.+-..            ..+......++..+.+.||       |||++.+++|++
T Consensus       296 ~~~--~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          296 EMG--DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             GCC--GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             hhc--ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecch
Confidence            211  23579999997654211            1111223456777777776       799999998876

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.94  E-value=3.9e-05  Score=68.20  Aligned_cols=77  Identities=10%  Similarity=0.015  Sum_probs=59.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD  107 (312)
                      ..++..+||.+||.|+++..++.. ..+|+|+|.++.+++.|++ +..    .++.++++|.....  ..+.. ...++|
T Consensus        20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~--~~L~~~g~~~vD   91 (285)
T 1wg8_A           20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLK--RHLAALGVERVD   91 (285)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHH--HHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHH--HHHHHcCCCCcC
Confidence            457889999999999999999887 5699999999999999998 654    24899999876532  22221 125799


Q ss_pred             EEEecc
Q 021467          108 LVCCFQ  113 (312)
Q Consensus       108 ~V~~~~  113 (312)
                      .|++..
T Consensus        92 gIL~DL   97 (285)
T 1wg8_A           92 GILADL   97 (285)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            988643

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.90  E-value=6e-05  Score=67.34  Aligned_cols=106  Identities=12%  Similarity=-0.023  Sum_probs=76.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc------CCCeEEEEeCCh--------------------------HHHHHHHHHHHhcC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVAT--------------------------SGIGEARDTWENQR   78 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~------~~~~v~giDis~--------------------------~~i~~a~~r~~~~~   78 (312)
                      ...+|||+|+..|..+..++..      ...+++++|..+                          .+++.++++++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3569999999999876655432      256899999642                          14677888888766


Q ss_pred             C-CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           79 K-NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        79 ~-~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      . ..+++++.+|+.+. +. .+  +.++||+|..-...      .+.....|..+...|+|||++++.-
T Consensus       186 l~~~~I~li~Gda~et-L~-~~--~~~~~d~vfIDaD~------y~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDT-LP-TA--PIDTLAVLRMDGDL------YESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             CCSTTEEEEESCHHHH-ST-TC--CCCCEEEEEECCCS------HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCcCceEEEEeCHHHH-Hh-hC--CCCCEEEEEEcCCc------cccHHHHHHHHHhhcCCCEEEEEcC
Confidence            5 25699999987431 11 11  24689999887643      2335678999999999999998863

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.88  E-value=0.00011  Score=67.81  Aligned_cols=97  Identities=7%  Similarity=-0.084  Sum_probs=65.3

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ..+.++.+||||||++|+.+..+.+.+. +|+|||+.+-.     ......+   .+.++++|......      ...++
T Consensus       207 ~~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~-----~~l~~~~---~V~~~~~d~~~~~~------~~~~~  271 (375)
T 4auk_A          207 ERLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMA-----QSLMDTG---QVTWLREDGFKFRP------TRSNI  271 (375)
T ss_dssp             HHSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCC-----HHHHTTT---CEEEECSCTTTCCC------CSSCE
T ss_pred             ccCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcC-----hhhccCC---CeEEEeCccccccC------CCCCc
Confidence            3456899999999999999888877654 99999987521     1122222   38999999887654      45789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      |+|+|-.+.+     ......++......+..++.++
T Consensus       272 D~vvsDm~~~-----p~~~~~l~~~wl~~~~~~~aI~  303 (375)
T 4auk_A          272 SWMVCDMVEK-----PAKVAALMAQWLVNGWCRETIF  303 (375)
T ss_dssp             EEEEECCSSC-----HHHHHHHHHHHHHTTSCSEEEE
T ss_pred             CEEEEcCCCC-----hHHhHHHHHHHHhccccceEEE
Confidence            9999987543     3344444444444444445443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.85  E-value=5e-05  Score=68.35  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             HHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        21 k~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      ...+|..+..++..|||++||+|..+......+ .+++|+|+++++++.|++|+...
T Consensus       225 ~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          225 AERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            344556666789999999999997777665554 59999999999999999998764

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.77  E-value=0.00015  Score=64.50  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=72.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhhhcCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~~~~~~  105 (312)
                      ++.++.+||||||++|+.+...+.. +...|+|+|+-..--+.-+ ..+..+. .-+.++.+ |+....        ..+
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHhhCC--------CCC
Confidence            4568889999999999887755544 5668999999864110000 0000000 11777777 775432        367


Q ss_pred             eeEEEeccchhhhcCC-H-H--HHHHHHHHHHhccCCC-cEEEEEecCh--hHHHHHH
Q 021467          106 ADLVCCFQHLQMCFET-E-E--RARRLLQNVSSLLKPG-GYFLGITPDS--STIWAKY  156 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~-~-~--~~~~~l~~i~~~LkpG-G~~i~~~p~~--~~l~~~~  156 (312)
                      +|+|+|--+ .- -.+ . +  ....+|.-+.++|++| |-|++-+...  ..+.+++
T Consensus       161 ~D~ivcDig-eS-s~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l  216 (321)
T 3lkz_A          161 CDTLLCDIG-ES-SSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKM  216 (321)
T ss_dssp             CSEEEECCC-CC-CSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHH
T ss_pred             CCEEEEECc-cC-CCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHH
Confidence            999999765 11 111 1 1  2233677778999999 8998886665  5554444

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.76  E-value=1.6e-05  Score=69.36  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--CCc-eEEEEEc-CCCCCchhhhhhhc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNF-IAEFFEA-DPCAENFETQMQEK  102 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--~~~-~~~f~~~-D~~~~~~~~~~~~~  102 (312)
                      +++|+.+||||||+.|+-+...+.. +...|.|.++..+. .    ..+...  ... -+.|.++ |+.+.        .
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~----~~P~~~~~~Gv~~i~~~~G~Df~~~--------~  136 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H----EEPMLMQSYGWNIVTMKSGVDVFYK--------P  136 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S----CCCCCCCSTTGGGEEEECSCCGGGS--------C
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c----cCCCcccCCCceEEEeeccCCccCC--------C
Confidence            6779999999999999766655443 13344566665431 0    000000  010 1355556 87652        3


Q ss_pred             CCceeEEEeccchhh---hcCCHHHHHHHHHHHHhccCCCc-EEEEEecCh--hHHHH
Q 021467          103 ANQADLVCCFQHLQM---CFETEERARRLLQNVSSLLKPGG-YFLGITPDS--STIWA  154 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~---~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~--~~l~~  154 (312)
                      ..++|+|+|-.+-..   ..++...+. +|.-+.++|+||| .|++-+-..  ..+.+
T Consensus       137 ~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~  193 (269)
T 2px2_A          137 SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCIKILCPYMPKVIE  193 (269)
T ss_dssp             CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEEEESCTTSHHHHH
T ss_pred             CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEEEECCCCchHHHH
Confidence            468999999664321   111111222 6777779999999 888876555  44433

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.64  E-value=7.5e-05  Score=66.28  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=74.6

Q ss_pred             hHHhHHHHHHHHHHHHhcC-------CCCEEEEECC------CCCccH-HHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           12 THHRLYEFAKTALIKIYSH-------PYVTVCDLYC------GAGVDV-DKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~~~-------~~~~VLDlGC------G~G~~l-~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      |.--+.|.+|..-+-.|+.       .+.+|||+|+      -.|... ..| ......++++|+.+-..         .
T Consensus        83 p~g~~~nv~kytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~s---------d  152 (344)
T 3r24_A           83 PKGIMMNVAKYTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFVS---------D  152 (344)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCBC---------S
T ss_pred             CCCcEeeHHHHHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCccccc---------C
Confidence            3334668888776666653       5789999996      455422 223 11224899999986321         1


Q ss_pred             CCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           78 RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        78 ~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .    -.++++|+....       ..++||+|++-.+-.-.       ..+..-.+.++.-+.+.|+|||.|++-+-..
T Consensus       153 a----~~~IqGD~~~~~-------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          153 A----DSTLIGDCATVH-------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             S----SEEEESCGGGEE-------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             C----CeEEEccccccc-------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            1    145899975522       24889999995542110       0123346778888899999999999885444

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.48  E-value=0.00096  Score=57.47  Aligned_cols=116  Identities=20%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhhhcCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~~~~~~  105 (312)
                      ++.++.+||||||++|+.....+.. +..+|+|+|+-..--+.-+ ..+..+ -..++|.++ |+...        +..+
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~-~~~s~g-wn~v~fk~gvDv~~~--------~~~~  144 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV-PMSTYG-WNIVKLMSGKDVFYL--------PPEK  144 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC-CCCCTT-TTSEEEECSCCGGGC--------CCCC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc-hhhhcC-cCceEEEeccceeec--------CCcc
Confidence            3568889999999999888755544 5668999999764210000 000000 012889888 86432        3477


Q ss_pred             eeEEEeccchhhhcCC-H-H--HHHHHHHHHHhccCCCcEEEEEecChh--HHHHHH
Q 021467          106 ADLVCCFQHLQMCFET-E-E--RARRLLQNVSSLLKPGGYFLGITPDSS--TIWAKY  156 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~-~-~--~~~~~l~~i~~~LkpGG~~i~~~p~~~--~l~~~~  156 (312)
                      +|.|+|--+--.  .+ . +  ....+|+-+.++|++ |.|++-+....  .+.+++
T Consensus       145 ~DtllcDIgeSs--~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l  198 (267)
T 3p8z_A          145 CDTLLCDIGESS--PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHL  198 (267)
T ss_dssp             CSEEEECCCCCC--SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHH
T ss_pred             ccEEEEecCCCC--CChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHH
Confidence            999999665311  11 1 1  223367777899999 78877754443  354444

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.37  E-value=0.0001  Score=83.47  Aligned_cols=104  Identities=21%  Similarity=0.268  Sum_probs=57.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEK  102 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~------~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~  102 (312)
                      .+..+||++|.|+|+.+..++..      ...+|+..|+|+...+.|+++++...    +..-..|..+. .+      .
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~------~ 1308 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPG------S 1308 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC--------
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccC------C
Confidence            35789999999999876655443      13479999999999988888876532    33322343321 12      2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ...||+|++..++|.    ..+....|.+++++|||||++++..+
T Consensus      1309 ~~~ydlvia~~vl~~----t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1309 LGKADLLVCNCALAT----LGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             ---CCEEEEECC------------------------CCEEEEEEC
T ss_pred             CCceeEEEEcccccc----cccHHHHHHHHHHhcCCCcEEEEEec
Confidence            357999999998885    44577889999999999999988643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.34  E-value=0.0005  Score=60.51  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=45.8

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR   78 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~   78 (312)
                      +...+|..+..++..|||..||+|..+......+ .+++|+|+++.+++.|++|++..+
T Consensus       201 l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g-r~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG-RNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHHhcc
Confidence            3345566667789999999999997766655544 599999999999999999987643

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.28  E-value=0.0042  Score=56.74  Aligned_cols=112  Identities=14%  Similarity=0.157  Sum_probs=78.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--------------------CCceEEEEEc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--------------------KNFIAEFFEA   88 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--------------------~~~~~~f~~~   88 (312)
                      .+...|+.||||.......+... +...++-+|. ++.++.-++.+...+                    ...+..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35678999999998666555443 3447777777 777777666665431                    0134788999


Q ss_pred             CCCCCchhhh-hhh--cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           89 DPCAENFETQ-MQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        89 D~~~~~~~~~-~~~--~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+.+.+.... +..  ......++++-.++.|  .+.+....+++.+.+.+ |+|.+++.
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~Y--L~~~~~~~ll~~ia~~~-~~~~~v~~  231 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKF-SHGLWISY  231 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhC--CCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence            9988543211 111  2356789999999999  78999999999999988 67776533

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.86  E-value=0.043  Score=49.43  Aligned_cols=111  Identities=11%  Similarity=0.007  Sum_probs=80.6

Q ss_pred             CEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhc---CCc
Q 021467           33 VTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ  105 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~---~~~  105 (312)
                      ..|++||||-  +...+... + ...++=+| -++.++..++.+...+  ...+..++.+|+.+ .+...+...   ...
T Consensus       104 ~QvV~LGaGl--DTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          104 RQFVILASGL--DSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             CEEEEETCTT--CCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CeEEEeCCCC--CchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            5799999997  45544333 2 35899999 5899998888886432  13357889999988 544333211   133


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      -=++++-.++||  .+.++...+++.+...+.||+.+++...+.
T Consensus       180 Pt~~i~Egvl~Y--l~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          180 RTAWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             CEEEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CEEEEEechHhh--CCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence            457788888998  667889999999999999999999985443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.60  E-value=0.0097  Score=55.18  Aligned_cols=78  Identities=15%  Similarity=0.073  Sum_probs=58.0

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCceeEEE
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQADLVC  110 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~fD~V~  110 (312)
                      .+||||.||.|+...-+..++...+.++|+++.+++..+.++..      ..++++|+.+........  .....+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~------~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR------SLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT------SEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC------CceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            68999999999998888888887788999999988877766532      567889987754322111  0246799999


Q ss_pred             eccchh
Q 021467          111 CFQHLQ  116 (312)
Q Consensus       111 ~~~~lh  116 (312)
                      .....+
T Consensus        77 ggpPCQ   82 (376)
T 3g7u_A           77 GGPPCQ   82 (376)
T ss_dssp             ECCCCC
T ss_pred             ecCCCC
Confidence            866543

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.98  E-value=0.0071  Score=55.36  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=55.7

Q ss_pred             CCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..+||||.||.|+...-+..++  ...+.++|+++.+++..+.++..      ..++++|+.+..... +.  ...+|+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~-~~--~~~~D~l   72 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEE-FD--RLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHH-HH--HHCCSEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhH-cC--cCCcCEE
Confidence            3589999999999888887777  45799999999999988888753      346788887654211 11  1269999


Q ss_pred             Eeccchh
Q 021467          110 CCFQHLQ  116 (312)
Q Consensus       110 ~~~~~lh  116 (312)
                      +..+..+
T Consensus        73 ~~gpPCq   79 (343)
T 1g55_A           73 LMSPPCQ   79 (343)
T ss_dssp             EECCC--
T ss_pred             EEcCCCc
Confidence            9877643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.90  E-value=0.016  Score=52.71  Aligned_cols=71  Identities=14%  Similarity=0.051  Sum_probs=53.9

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      +.+||||.||.|+...-+..++...+.++|+++.+++..+.++....        ++|+.+....     .-..+|+|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~-----~~~~~D~l~~   77 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEK-----TIPDHDILCA   77 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGG-----GSCCCSEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHh-----hCCCCCEEEE
Confidence            47999999999999888888888889999999999988887764321        5777654321     1235999998


Q ss_pred             ccch
Q 021467          112 FQHL  115 (312)
Q Consensus       112 ~~~l  115 (312)
                      .+..
T Consensus        78 gpPC   81 (327)
T 2c7p_A           78 GFPC   81 (327)
T ss_dssp             ECCC
T ss_pred             CCCC
Confidence            6553

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.88  E-value=0.015  Score=53.38  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 021467           32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN   94 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~   94 (312)
                      +..|||||.|.|..+..++.. ...+|+++++++..+...++.. ..   .+++.+.+|+...+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPLQILKRDPYDWS  118 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSCEEECSCTTCHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCEEEEECCccchh
Confidence            589999999999999888875 4568999999999999888876 22   24889999996654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.57  E-value=0.022  Score=51.57  Aligned_cols=55  Identities=13%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      ..+|..+..++..|||.-||+|..+......+ .+++|+|+++..++.|++|+...
T Consensus       243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g-r~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERES-RKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhc
Confidence            45566677789999999999997666655444 59999999999999999998653

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.48  E-value=0.0054  Score=54.40  Aligned_cols=108  Identities=6%  Similarity=-0.050  Sum_probs=75.8

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      +..+||+=+|+|......+. +..+++.+|.++..++..+++.+..   .+++++..|.... + ..+..+..+||+|++
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~~---~~~~V~~~D~~~~-L-~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVSK-L-NALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHHH-H-HHHCSCTTSCEEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCcC---CcEEEEeCcHHHH-H-HHhcCCCCCccEEEE
Confidence            56799999999987777766 5589999999999998888877542   3488888886431 1 111123457999998


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHh--ccCCCcEEEEEecCh
Q 021467          112 FQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS  149 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~--~LkpGG~~i~~~p~~  149 (312)
                      --...    ..+....+++.+.+  .+.|+|++++-.|-.
T Consensus       166 DPPYe----~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~  201 (283)
T 2oo3_A          166 DPSYE----RKEEYKEIPYAIKNAYSKFSTGLYCVWYPVV  201 (283)
T ss_dssp             CCCCC----STTHHHHHHHHHHHHHHHCTTSEEEEEEEES
T ss_pred             CCCCC----CCcHHHHHHHHHHHhCccCCCeEEEEEEecc
Confidence            77433    23345566666655  567899999985544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.21  E-value=0.034  Score=50.25  Aligned_cols=57  Identities=25%  Similarity=0.260  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCCh---HHHHHHHHHHHhc
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQ   77 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~---~~i~~a~~r~~~~   77 (312)
                      +...+|..+..++..|||.-||+|..+......+ .+++|+|+++   ..++.|++|+...
T Consensus       231 l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          231 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHHc
Confidence            3445667777899999999999997666655544 5899999999   9999999998653

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.21  E-value=0.049  Score=48.71  Aligned_cols=77  Identities=17%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCe--EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIAN--YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~--v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ...+|+||-||.|+...-+..++...  +.++|+++.+++.-+.++..      ..++.+|+.+..... ++ ..+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~------~~~~~~DI~~i~~~~-i~-~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQG------KIMYVGDVRSVTQKH-IQ-EWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTT------CEEEECCGGGCCHHH-HH-HTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCC------CceeCCChHHccHHH-hc-ccCCcCE
Confidence            45789999999999888887777755  69999999988766655432      357789988754322 21 1257999


Q ss_pred             EEeccch
Q 021467          109 VCCFQHL  115 (312)
Q Consensus       109 V~~~~~l  115 (312)
                      ++..+..
T Consensus        87 l~ggpPC   93 (295)
T 2qrv_A           87 VIGGSPC   93 (295)
T ss_dssp             EEECCCC
T ss_pred             EEecCCC
Confidence            9986643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=95.14  E-value=0.2  Score=43.74  Aligned_cols=115  Identities=11%  Similarity=0.076  Sum_probs=71.1

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHc--------CCCeEEEEe-----CCh----------------------HHHHHH
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGID-----VAT----------------------SGIGEA   70 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~--------~~~~v~giD-----is~----------------------~~i~~a   70 (312)
                      +....-...|+|+||-.|+.+..++..        ...+++|+|     +..                      +.+++.
T Consensus        64 ~~i~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~  143 (257)
T 3tos_A           64 RQVLDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEV  143 (257)
T ss_dssp             HHTTTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHH
T ss_pred             HHhhCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHH
Confidence            333344568999999999877765431        246899999     321                      112222


Q ss_pred             HHHH---HhcCC-CceEEEEEcCCCCCchhhhhh-hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           71 RDTW---ENQRK-NFIAEFFEADPCAENFETQMQ-EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        71 ~~r~---~~~~~-~~~~~f~~~D~~~~~~~~~~~-~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+..   +..+. ..+++++.+++.+ .+...+. .+..+||+|..-.-.      .+.....+..+...|+|||++++-
T Consensus       144 l~~~~~~~~~g~~~~~i~li~G~~~d-TL~~~l~~~~~~~~dlv~ID~D~------Y~~t~~~le~~~p~l~~GGvIv~D  216 (257)
T 3tos_A          144 LDAHECSDFFGHVTQRSVLVEGDVRE-TVPRYLAENPQTVIALAYFDLDL------YEPTKAVLEAIRPYLTKGSIVAFD  216 (257)
T ss_dssp             HHHHHTTSTTTTSCCSEEEEESCHHH-HHHHHHHHCTTCCEEEEEECCCC------HHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             HHHHhhhhhcCCCCCcEEEEEecHHH-HHHHHHHhCCCCceEEEEEcCcc------cchHHHHHHHHHHHhCCCcEEEEc
Confidence            1111   11222 2458999998744 2211111 134579999887642      344667888999999999999987


Q ss_pred             ec
Q 021467          146 TP  147 (312)
Q Consensus       146 ~p  147 (312)
                      -.
T Consensus       217 D~  218 (257)
T 3tos_A          217 EL  218 (257)
T ss_dssp             ST
T ss_pred             CC
Confidence            43

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.08  E-value=0.055  Score=48.90  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=63.4

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++.+||-.|+|. |..+..+++....+|+++|.+++.++.+++.-..       ..  .|..+.++...+....+.+|
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~~--i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAE-------VA--VNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-------EE--EETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC-------EE--EeCCCcCHHHHHHHhCCCCC
Confidence            45889999999875 5566666666555999999999988877653211       11  23333333332222234799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+....          ....++.+.++|++||+++..
T Consensus       235 ~vid~~g----------~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          235 GVLVTAV----------SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             EEEESSC----------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEeCC----------CHHHHHHHHHHhccCCEEEEe
Confidence            8875432          123467777899999999876

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.04  E-value=0.04  Score=49.98  Aligned_cols=76  Identities=12%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCC--CeE-EEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALI--ANY-IGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v-~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...+|+||.||.|+...-+..++.  ..+ .++|+++.+++..+.++...       .+++|+.+..... ++  ...+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~-i~--~~~~D   78 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQ-IE--SLNCN   78 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHH-HH--HTCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHH-hc--cCCCC
Confidence            456899999999998888877774  566 79999999888777776431       5678888765422 21  23699


Q ss_pred             EEEeccchh
Q 021467          108 LVCCFQHLQ  116 (312)
Q Consensus       108 ~V~~~~~lh  116 (312)
                      +++..+..+
T Consensus        79 il~ggpPCQ   87 (327)
T 3qv2_A           79 TWFMSPPCQ   87 (327)
T ss_dssp             EEEECCCCT
T ss_pred             EEEecCCcc
Confidence            999876544

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.97  E-value=0.042  Score=49.50  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=54.1

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~  112 (312)
                      ++||||-||.||...-+..++..-+.++|+++.+++.-+.++.       ..++.+|+.+....     .-...|+++..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~-----~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSD-----EFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGG-----GSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHh-----hCCcccEEEec
Confidence            4799999999998888888888778899999988776665542       35678998775432     12468999886


Q ss_pred             cch
Q 021467          113 QHL  115 (312)
Q Consensus       113 ~~l  115 (312)
                      +..
T Consensus        69 pPC   71 (331)
T 3ubt_Y           69 PPS   71 (331)
T ss_dssp             CCG
T ss_pred             CCC
Confidence            654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.76  E-value=0.19  Score=39.10  Aligned_cols=103  Identities=10%  Similarity=0.002  Sum_probs=64.7

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..+|+=+|||. |..+...+......|+++|.+++.++.+++    .+    +..+.+|..+.......  .-..+|+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a--~i~~ad~vi   76 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA--HLECAKWLI   76 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT--TGGGCSEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc--CcccCCEEE
Confidence            35799999986 544444444445589999999998877664    22    56788998775442221  124688887


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      +...      +...... +-...+.+.|+..++....+...
T Consensus        77 ~~~~------~~~~n~~-~~~~a~~~~~~~~iiar~~~~~~  110 (140)
T 3fwz_A           77 LTIP------NGYEAGE-IVASARAKNPDIEIIARAHYDDE  110 (140)
T ss_dssp             ECCS------CHHHHHH-HHHHHHHHCSSSEEEEEESSHHH
T ss_pred             EECC------ChHHHHH-HHHHHHHHCCCCeEEEEECCHHH
Confidence            5442      2222222 33355667888887776666543

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.73  E-value=0.031  Score=50.92  Aligned_cols=74  Identities=12%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           33 VTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+++|+.||.|+...-+..++.  ..+.++|+++.+++.-+.++..      ..++.+|+.+..... +  +...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~-~--~~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQV-I--KKWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHH-H--HHTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHH-h--ccCCCCEEE
Confidence            5899999999998888877765  5688999999988777766643      235678887654322 1  123699998


Q ss_pred             eccch
Q 021467          111 CFQHL  115 (312)
Q Consensus       111 ~~~~l  115 (312)
                      ..+..
T Consensus        75 ggpPC   79 (333)
T 4h0n_A           75 MSPPC   79 (333)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            75543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.44  E-value=0.12  Score=47.39  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      +.++.+||-+|||. |..+..+++. +...|+++|.+++.++.+++.-..       ..+  |..+.++.+.+.. ..+.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi--~~~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGAT-------HVI--NSKTQDPVAAIKEITDGG  258 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCS-------EEE--ETTTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCC-------EEe--cCCccCHHHHHHHhcCCC
Confidence            45789999999875 5455566655 444799999999988888654211       122  2222333222211 1237


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-.-.-          ...+....++|++||+++..
T Consensus       259 ~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          259 VNFALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             EEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            9999865421          23467778899999999876

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.01  E-value=0.075  Score=43.88  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||..|++  -|..+..++.....+|+++|.+++.++.+++    .+    +.. ..|..+......+..  ...
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g----~~~-~~d~~~~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LG----VEY-VGDSRSVDFADEILELTDGY  106 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TC----CSE-EEETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cC----CCE-EeeCCcHHHHHHHHHHhCCC
Confidence            3478899999953  3444455554444589999999887766643    12    111 124443333222211  124


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+..+.++|+|||+++..
T Consensus       107 ~~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A          107 GVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             CEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence            69999865421           2467778899999998865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.59  E-value=0.16  Score=45.70  Aligned_cols=97  Identities=13%  Similarity=-0.010  Sum_probs=61.2

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhhh-cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE-KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~-~~~  104 (312)
                      +.++.+||-.||+  -|..+..+++....+|+++|.+++.++.+++ +   +    +. ...|..+ ..+...+.. ..+
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~---g----~~-~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-I---G----FD-AAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T---T----CS-EEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-c---C----Cc-EEEecCCHHHHHHHHHHHhCC
Confidence            3478899999983  4444555555555599999999988887733 2   1    11 1224443 333222211 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+....++|++||+++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          214 GYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCeEEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence            79999866531           2367777899999999865

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.43  E-value=0.1  Score=48.25  Aligned_cols=106  Identities=15%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch-hhhhhh--cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQE--KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~-~~~~~~--~~  103 (312)
                      +.++.+||-+|||. |..+..+++. +..+|+++|.+++.++.+++.    +    ++.+  |..+.++ .+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i--~~~~~~~~~~~~~~~~~g  252 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G----FETI--DLRNSAPLRDQIDQILGK  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T----CEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C----CcEE--cCCCcchHHHHHHHHhCC
Confidence            45789999999875 5555666665 444899999999888776532    2    3322  3322222 222211  12


Q ss_pred             CceeEEEeccchhhhcCC-H----HHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFET-E----ERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~-~----~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-... .. .    ......+..+.++|++||+++..
T Consensus       253 ~g~Dvvid~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          253 PEVDCGVDAVGFEAH-GLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SCEEEEEECSCTTCB-CSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCEEEECCCCccc-cccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence            379999865432210 00 0    00113467778899999998865

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.91  E-value=0.4  Score=43.16  Aligned_cols=99  Identities=17%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             hcCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      -+.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.    +    +.. ..|..+.++...+....+.+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----G----a~~-~~d~~~~~~~~~~~~~~~~~  231 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL----G----ADL-VVNPLKEDAAKFMKEKVGGV  231 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CSE-EECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC----C----CCE-EecCCCccHHHHHHHHhCCC
Confidence            356889999999963 4444555555455999999999988877542    2    111 23444433332221111579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+....-          ...++...++|++||+++..
T Consensus       232 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          232 HAAVVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            999865431          12466777899999999865

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=92.82  E-value=0.32  Score=43.54  Aligned_cols=120  Identities=13%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             CCCEEEEECCCCCccHH-HH---HHc-CCC--eEEEEeCCh--------HHHHHHHHHH-Hh----cCCCceEEEEEcCC
Q 021467           31 PYVTVCDLYCGAGVDVD-KW---ETA-LIA--NYIGIDVAT--------SGIGEARDTW-EN----QRKNFIAEFFEADP   90 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~-~~---~~~-~~~--~v~giDis~--------~~i~~a~~r~-~~----~~~~~~~~f~~~D~   90 (312)
                      +..+|||+|-|+|-.+. .|   .+. +..  +++.+|-.+        +.+....+.+ ..    ........+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            44689999999996432 22   122 222  566777421        1122222211 11    12234567778886


Q ss_pred             CCCchhhhhhhcCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467           91 CAENFETQMQEKANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      .+. + ..+  .+..||+|..-. +-.-  ..+-=-..+++.++++++|||+|. |...+..+.+.++
T Consensus       176 ~~~-l-~~l--~~~~~Da~flDgFsP~k--NPeLWs~e~f~~l~~~~~pgg~la-TYtaag~VRR~L~  236 (308)
T 3vyw_A          176 RKR-I-KEV--ENFKADAVFHDAFSPYK--NPELWTLDFLSLIKERIDEKGYWV-SYSSSLSVRKSLL  236 (308)
T ss_dssp             HHH-G-GGC--CSCCEEEEEECCSCTTT--SGGGGSHHHHHHHHTTEEEEEEEE-ESCCCHHHHHHHH
T ss_pred             HHH-H-hhh--cccceeEEEeCCCCccc--CcccCCHHHHHHHHHHhCCCcEEE-EEeCcHHHHHHHH
Confidence            441 1 111  235799998642 2111  000012678999999999999876 4444555555454

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.79  E-value=0.48  Score=42.99  Aligned_cols=101  Identities=14%  Similarity=0.033  Sum_probs=63.0

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhhh--cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~-~~~~~~~~~~--~~  103 (312)
                      +.++.+||=+|+|. |..+..+++.... .|+++|.+++-++.+++. ...-    +. +..|.. ..++...+..  ..
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~----~~-~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEV----VT-HKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTC----EE-EECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhc----cc-ccccccchHHHHHHHHHHhCC
Confidence            45889999999864 4455566665444 499999999999988876 3221    22 222211 1122222211  23


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-          ...+....++|++||+++..
T Consensus       251 ~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          251 IEPAVALECTGV----------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             CCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            579999865421          23466777899999999876

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.69  E-value=0.37  Score=44.08  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh----c
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE----K  102 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~----~  102 (312)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++.++.+++.-..       .  ..|..+.++...+..    .
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~--vi~~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT-------A--TVDPSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------E--EECTTSSCHHHHHHSTTSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------E--EECCCCcCHHHHHHhhhhcc
Confidence            56889999999864 4455566655 444899999999988877664211       1  123333333222221    1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+.+|+|+-.-.-          ...+..+.++|++||+++..
T Consensus       251 ~gg~Dvvid~~G~----------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          251 PGGVDVVIECAGV----------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             TTCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            3489999864421          23467777899999999876

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.66  E-value=0.26  Score=44.88  Aligned_cols=97  Identities=13%  Similarity=-0.030  Sum_probs=61.4

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCc
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~  105 (312)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.-..       ..+  |-...++...+..  ....
T Consensus       187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi--~~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          187 LRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGAD-------HGI--NRLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             CCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCS-------EEE--ETTTSCHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCC-------EEE--cCCcccHHHHHHHHhCCCC
Confidence            34789999999775 4455566665556999999999988887653211       122  2111233222211  2347


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+....-           ..+....++|++||.++..
T Consensus       258 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          258 ADHILEIAGG-----------AGLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             EEEEEEETTS-----------SCHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCh-----------HHHHHHHHHhhcCCEEEEE
Confidence            9999865531           1356667899999999876

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.62  E-value=0.24  Score=45.02  Aligned_cols=100  Identities=10%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhhh-cCC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~-~~~~~~~~~~-~~~  104 (312)
                      +.++.+||-+|+|. |..+..+++... .+|+++|.+++-++.+++.-..       ..+..+-. ..++...+.. ...
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC-------EEEcCcccccchHHHHHHHHhCC
Confidence            45889999999874 545556666544 4899999999888877643211       12221100 0122111111 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+-.-.-          ...+....++|++||+++..
T Consensus       242 g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          242 KPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             CCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            79999855421          22466677899999999876

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.57  E-value=0.21  Score=45.02  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=60.3

Q ss_pred             cCCCCEEEEECCCC--CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~--G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-+|+|.  |..+..+++....+|+++|.+++.++.+++.-..       ..  .|..+.++...+..  ...
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~-------~~--~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA-------YV--IDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EE--EETTTSCHHHHHHHHTTTS
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc-------EE--EeCCcccHHHHHHHHhCCC
Confidence            34789999999985  4445555555445999999999988888763211       11  23333333322211  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-..       .    ....++|++||+++..
T Consensus       213 g~Dvvid~~g~~~-------~----~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          213 GADAAIDSIGGPD-------G----NELAFSLRPNGHFLTI  242 (340)
T ss_dssp             CEEEEEESSCHHH-------H----HHHHHTEEEEEEEEEC
T ss_pred             CCcEEEECCCChh-------H----HHHHHHhcCCCEEEEE
Confidence            7999986553221       2    2334799999999876

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.52  E-value=0.21  Score=44.84  Aligned_cols=98  Identities=10%  Similarity=-0.052  Sum_probs=62.5

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      +.++.+||-.|++  -|..+..+++....+|+++|.+++-++.+.+.+   +    +. ...|..+.++...+.. ..+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---g----~~-~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---G----FD-GAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---C----CS-EEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----CC-EEEECCCHHHHHHHHHhcCCC
Confidence            4588999999984  344555665555559999999998877774333   1    11 1123333333322211 2357


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+....-           ..+..+.++|++||+++..
T Consensus       219 ~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          219 IDVFFDNVGG-----------EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             EEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEECCCc-----------chHHHHHHHHhhCCEEEEE
Confidence            9999865531           2577788899999999876

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=92.47  E-value=0.28  Score=44.45  Aligned_cols=98  Identities=11%  Similarity=0.037  Sum_probs=60.6

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhhh--c--
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE--K--  102 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~--~--  102 (312)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.-..       ..+  |..+ .++...+..  .  
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~~~--~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD-------VTL--VVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-------EEE--ECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------EEE--cCcccccHHHHHHHHhccc
Confidence            45889999999864 4455566665555799999999988877643211       112  2221 222222211  1  


Q ss_pred             -CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 -ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 -~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                       ...+|+|+..-.-          ...+....++|++||+++..
T Consensus       237 ~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          237 IGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             2579999865421          12466677899999999876

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.43  E-value=0.24  Score=44.83  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||=+|+|. |..+..+++... .+|+++|.+++-++.+++.-..       ..  .|..+.++.+.+..  ...
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~v--i~~~~~~~~~~v~~~t~g~  234 (352)
T 3fpc_A          164 IKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGAT-------DI--INYKNGDIVEQILKATDGK  234 (352)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCC-------EE--ECGGGSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc-------eE--EcCCCcCHHHHHHHHcCCC
Confidence            45789999999864 445556666544 4899999999888877664211       11  23222333222211  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+-...-          ...+..+.++|+|||+++..
T Consensus       235 g~D~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          235 GVDKVVIAGGD----------VHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEe
Confidence            79999864421          13467777899999999866

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=92.41  E-value=1.5  Score=35.09  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ....-..-|||+|-|+|+.-..+... +...++.+|-.-.+       .... ....-.++.+|+.+. +......-..+
T Consensus        36 ~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~-------hp~~-~P~~e~~ilGdi~~t-L~~~~~r~g~~  106 (174)
T 3iht_A           36 QTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS-------HPDS-TPPEAQLILGDIRET-LPATLERFGAT  106 (174)
T ss_dssp             HTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC-------CGGG-CCCGGGEEESCHHHH-HHHHHHHHCSC
T ss_pred             HhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc-------CCCC-CCchHheecccHHHH-HHHHHHhcCCc
Confidence            33445567999999999877776554 66789999964211       0000 000123555554331 10000001234


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .-++.+-...|+--.+...+..+-.-+..+|.|||+++-.
T Consensus       107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~  146 (174)
T 3iht_A          107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSS  146 (174)
T ss_dssp             EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred             eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence            4455555544441111112233344577899999998854

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.38  E-value=0.69  Score=42.74  Aligned_cols=103  Identities=14%  Similarity=0.007  Sum_probs=61.2

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.+++.-..       .  ..|..+.++...+..  ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~--vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGAD-------H--VIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS-------E--EECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC-------E--EEcCCCCCHHHHHHHHhCCC
Confidence            34788999999864 3344555555 444999999999988888654211       1  123333333332221  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+-.-.-.     ......+++.+.+.+++||+++..
T Consensus       282 g~D~vid~~g~~-----~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          282 GAKLFLEATGVP-----QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CCSEEEECSSCH-----HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCEEEECCCCc-----HHHHHHHHHHHHhccCCCcEEEEe
Confidence            799998544211     012334444444666999999876

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=92.34  E-value=0.3  Score=45.49  Aligned_cols=63  Identities=5%  Similarity=-0.065  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCCccHHHHH-Hc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCC-ceEEEEEcCCCC
Q 021467           30 HPYVTVCDLYCGAGVDVDKWE-TA-L-IANYIGIDVATSGIGEARDTWEN--QRKN-FIAEFFEADPCA   92 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~-~~-~-~~~v~giDis~~~i~~a~~r~~~--~~~~-~~~~f~~~D~~~   92 (312)
                      +++..|+|+|++.|..+..++ +. + ..+|+++++++...+..+++.+.  ++.. .++..+..-+.+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            477899999999998777666 33 2 36999999999999999998876  3222 346666654443

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.28  E-value=0.41  Score=43.11  Aligned_cols=97  Identities=14%  Similarity=0.097  Sum_probs=61.9

Q ss_pred             cCCCCEEEEECC--CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGC--G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|+  |.|..+..+++....+|+++|.+++.++.+++.    +    +.. ..|..+.++.+.+..  ...
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g----a~~-~~d~~~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKAL----G----ADE-TVNYTHPDWPKEVRRLTGGK  234 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T----CSE-EEETTSTTHHHHHHHHTTTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----C----CCE-EEcCCcccHHHHHHHHhCCC
Confidence            347889999998  345455566655555999999999988887642    1    111 124433333222221  124


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+.... .          ..+..+.++|++||+++..
T Consensus       235 ~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          235 GADKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             CEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             CceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence            7999987664 1          1356677899999998865

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=92.13  E-value=0.38  Score=43.27  Aligned_cols=98  Identities=11%  Similarity=0.021  Sum_probs=61.2

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhh-cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE-KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~-~~~  104 (312)
                      +.++.+||-.|++  -|..+..+++....+|+++|.+++.++.+++.+   +    +.. ..|..+. .+...+.. ..+
T Consensus       153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---g----~~~-~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---G----FDD-AFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---C----CSE-EEETTSCSCSHHHHHHHCTT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C----Cce-EEecCCHHHHHHHHHHHhCC
Confidence            3478999999983  344555555554559999999998887776433   2    111 1233321 22222211 125


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+....++|++||+++..
T Consensus       225 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          225 GIDIYFENVGG-----------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             CEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             CCcEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            79999866531           2477788899999999865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.08  E-value=1.2  Score=34.18  Aligned_cols=101  Identities=16%  Similarity=0.083  Sum_probs=60.1

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..+|+=+|||. |..+...+.....+|+++|.+++.++.+++.    +    ..++.+|..+.......  .-..+|+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----~----~~~~~gd~~~~~~l~~~--~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----G----FDAVIADPTDESFYRSL--DLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----T----CEEEECCTTCHHHHHHS--CCTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----C----CcEEECCCCCHHHHHhC--CcccCCEEE
Confidence            35799999975 3333333444445899999999887766542    2    56788998775432221  125689887


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +...      +.+.. ..+....+.+. .+.++....+..
T Consensus        76 ~~~~------~~~~n-~~~~~~a~~~~-~~~iia~~~~~~  107 (141)
T 3llv_A           76 ITGS------DDEFN-LKILKALRSVS-DVYAIVRVSSPK  107 (141)
T ss_dssp             ECCS------CHHHH-HHHHHHHHHHC-CCCEEEEESCGG
T ss_pred             EecC------CHHHH-HHHHHHHHHhC-CceEEEEEcChh
Confidence            6542      22222 23333444455 566666665554

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.01  E-value=0.58  Score=43.08  Aligned_cols=107  Identities=15%  Similarity=0.068  Sum_probs=63.0

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhhh--cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQE--KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~-~~~~~~~--~~  103 (312)
                      +.++.+||-+|||. |..+..+++. +...|+++|.+++-++.+++.    +    ++.+  |....+ +.+.+..  ..
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----G----a~~i--~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIA--DLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEE--ETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----C----CcEE--ccCCcchHHHHHHHHhCC
Confidence            45789999999865 5455666665 444899999999988887543    2    2322  222222 2222211  12


Q ss_pred             CceeEEEeccchhhhcC-----CHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFE-----TEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~-----~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-.....     +.......+....++|++||+++..
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            47999986543210000     0001123577778899999999865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.85  E-value=0.34  Score=43.77  Aligned_cols=91  Identities=16%  Similarity=0.096  Sum_probs=60.1

Q ss_pred             hcCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      -+.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.-.       -..+ .|.  ..+       ...+
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~v~-~~~--~~~-------~~~~  235 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV-------KHFY-TDP--KQC-------KEEL  235 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC-------SEEE-SSG--GGC-------CSCE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC-------Ceec-CCH--HHH-------hcCC
Confidence            345889999999864 545556666555599999999998887765321       1122 221  111       2379


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+-...-.          ..+....++|+|||+++..
T Consensus       236 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          236 DFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence            9998654322          1366677899999999976

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=91.70  E-value=0.1  Score=49.79  Aligned_cols=82  Identities=11%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-----------hhhh
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-----------TQMQ  100 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~-----------~~~~  100 (312)
                      ..+++||-||.||...-+..++...+.++|+++.+++.-+.++...+   ....+++|+.+....           ..+.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p---~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDP---ATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCT---TTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCC---CcceeccchhhhhhccccccchhhHHhhhh
Confidence            36899999999998888877787778999999988776666552211   134567887653210           0011


Q ss_pred             hcCCceeEEEeccchh
Q 021467          101 EKANQADLVCCFQHLQ  116 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh  116 (312)
                      .....+|+++..+..+
T Consensus       165 ~~~~~~Dvl~gGpPCQ  180 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQ  180 (482)
T ss_dssp             HHSCCCSEEEEECCCC
T ss_pred             hcCCCCCEEEecCCCc
Confidence            1225689998866544

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.57  E-value=0.31  Score=44.61  Aligned_cols=95  Identities=16%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++.++.+++.- .      ...+  |..+.+....+   ...+|
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lG-a------~~vi--~~~~~~~~~~~---~~g~D  259 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG-A------DEVV--NSRNADEMAAH---LKSFD  259 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHT-C------SEEE--ETTCHHHHHTT---TTCEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-C------cEEe--ccccHHHHHHh---hcCCC
Confidence            45889999999874 44555666655558999999999888887521 1      1112  22221211111   25799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+..-.-.          ..+....++|++||+++..
T Consensus       260 vvid~~g~~----------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          260 FILNTVAAP----------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             EEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence            998654321          1255667899999998865

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.28  E-value=0.45  Score=42.96  Aligned_cols=96  Identities=17%  Similarity=0.098  Sum_probs=60.7

Q ss_pred             CCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      ++.+||-+|+|. |..+..+++.... +|+++|.+++.++.+++.-        +.. ..|..+.++.+.+..  ....+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~G--------a~~-~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG--------ADY-VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHT--------CSE-EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC--------CCE-EECCCCcCHHHHHHHHcCCCCC
Confidence            788999999953 4445555555444 8999999998888776431        111 124333333332221  12469


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+..-.-          ...+..+.++|++||+++..
T Consensus       238 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          238 DVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             EEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            999865431          23466777899999998866

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.27  E-value=0.18  Score=44.81  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhc--C--------------CHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           82 IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF--E--------------TEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        82 ~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~--~--------------~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+.++++|+.+.  ...+  ++++||+|++.-.....-  .              ....+..+++++.++|||||.+++.
T Consensus        21 ~~~i~~gD~~~~--l~~l--~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREV--LASF--PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHH--HTTS--CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHH--HhhC--CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            368899998651  1111  357999999976542100  0              0122456788999999999999988


Q ss_pred             ecCh
Q 021467          146 TPDS  149 (312)
Q Consensus       146 ~p~~  149 (312)
                      +.+.
T Consensus        97 ~~d~  100 (297)
T 2zig_A           97 VGDV  100 (297)
T ss_dssp             ECCE
T ss_pred             ECCC
Confidence            7754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.18  E-value=0.41  Score=43.41  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             cCCCCEEEEECCCC--CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~--G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|++.  |..+..+++....+|+++|.+++.++.+++.    +    +.. ..|..+..+...+..  ...
T Consensus       168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----a~~-~~d~~~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN----G----AHE-VFNHREVNYIDKIKKYVGEK  238 (351)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----T----CSE-EEETTSTTHHHHHHHHHCTT
T ss_pred             CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc----C----CCE-EEeCCCchHHHHHHHHcCCC
Confidence            34789999999733  4445555555556999999999888766432    2    111 123333333222211  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+....++|++||+++..
T Consensus       239 ~~D~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          239 GIDIIIEMLAN-----------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             CEEEEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CcEEEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence            79999866531           2356677899999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.09  E-value=1  Score=36.34  Aligned_cols=103  Identities=15%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             CCEEEEECCCC-CccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +.+|+=+|||. |..+...+... ...|+++|.+++.++.+++.    +    +..+.+|..+........ .-..+|+|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~----g----~~~~~gd~~~~~~l~~~~-~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE----G----RNVISGDATDPDFWERIL-DTGHVKLV  109 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT----T----CCEEECCTTCHHHHHTBC-SCCCCCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC----C----CCEEEcCCCCHHHHHhcc-CCCCCCEE
Confidence            46899999985 43444444333 45899999999877665432    2    456778876533211110 12468988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ++...      +......++ ...+.+.|++.++....+..
T Consensus       110 i~~~~------~~~~~~~~~-~~~~~~~~~~~ii~~~~~~~  143 (183)
T 3c85_A          110 LLAMP------HHQGNQTAL-EQLQRRNYKGQIAAIAEYPD  143 (183)
T ss_dssp             EECCS------SHHHHHHHH-HHHHHTTCCSEEEEEESSHH
T ss_pred             EEeCC------ChHHHHHHH-HHHHHHCCCCEEEEEECCHH
Confidence            76432      222223333 35556677888887766543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=90.92  E-value=0.34  Score=43.75  Aligned_cols=98  Identities=16%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             cCCCCEEEEECCCCC--ccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cC-
Q 021467           29 SHPYVTVCDLYCGAG--VDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KA-  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~-  103 (312)
                      +.++.+||-.|+|.|  ..+..+++.. ..+|+++|.+++.++.+++.    +.   ...  .|..+.+....+.. .. 
T Consensus       168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~---~~~--~~~~~~~~~~~~~~~~~~  238 (347)
T 1jvb_A          168 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---DYV--INASMQDPLAEIRRITES  238 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---SEE--EETTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC---CEE--ecCCCccHHHHHHHHhcC
Confidence            457899999999844  3444555444 56899999999988877542    11   111  23333332211111 12 


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +.+|+|+....-          ...+..+.++|++||+++..
T Consensus       239 ~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          239 KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            579999865531          23467778899999999865

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.82  E-value=0.44  Score=42.56  Aligned_cols=97  Identities=18%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             cCCCCEEEEECC-C-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|+ | -|..+..+++....+|+++|.+++-++.+++.-.       ...  .|..+.++...+..  ...
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga-------~~~--~~~~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA-------WET--IDYSHEDVAKRVLELTDGK  208 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC-------SEE--EETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------CEE--EeCCCccHHHHHHHHhCCC
Confidence            347899999993 3 3445555555544599999999998887765321       111  23333333322221  234


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+....++|++||+++..
T Consensus       209 g~Dvvid~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          209 KCPVVYDGVGQ-----------DTWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             CEEEEEESSCG-----------GGHHHHHTTEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhcCCCEEEEE
Confidence            79999865532           2356677899999999876

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.73  E-value=0.7  Score=42.14  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhhh-cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~-~~  103 (312)
                      +.++.+||-+|+|. |..+..+++... .+|+++|.+++.++.+++.    +    +.. ..|..+  .++.+.+.. ..
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----G----a~~-vi~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----G----ATD-FVNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----T----CCE-EECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----C----Cce-EEeccccchhHHHHHHHHhC
Confidence            34789999999864 445556665544 4899999999988877643    2    111 123221  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+..-.-          ...+....++|++| |+++..
T Consensus       261 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          261 GGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence            479999865421          23467778899999 999866

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=90.53  E-value=0.88  Score=41.39  Aligned_cols=95  Identities=13%  Similarity=0.105  Sum_probs=61.0

Q ss_pred             CCCEEEEEC-CCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCce
Q 021467           31 PYVTVCDLY-CGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQA  106 (312)
Q Consensus        31 ~~~~VLDlG-CG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~f  106 (312)
                      ++.+||=.| +|. |..+..+++. +..+|+++|.+++-++.+++.    +    +.. ..|..+ ++...+.. ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l----G----ad~-vi~~~~-~~~~~v~~~~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL----G----AHH-VIDHSK-PLAAEVAALGLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT----T----CSE-EECTTS-CHHHHHHTTCSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc----C----CCE-EEeCCC-CHHHHHHHhcCCCc
Confidence            577899998 553 5556666665 677999999999888877652    2    111 123222 23222211 23579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+....          ....+..+.++|++||+++..
T Consensus       241 Dvvid~~g----------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTH----------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSC----------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCC----------chhhHHHHHHHhcCCCEEEEE
Confidence            99886442          223567778899999999876

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=90.41  E-value=0.62  Score=42.21  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=57.5

Q ss_pred             CEEEEECCCC-CccH-HHHH-HcCCCe-EEEEeCChH---HHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           33 VTVCDLYCGA-GVDV-DKWE-TALIAN-YIGIDVATS---GIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l-~~~~-~~~~~~-v~giDis~~---~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .+||-+|+|. |..+ ..++ +....+ |+++|.+++   -++.+++.    +    ++.+  |..+.++.. +....+.
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~l----G----a~~v--~~~~~~~~~-i~~~~gg  242 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEEL----D----ATYV--DSRQTPVED-VPDVYEQ  242 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHT----T----CEEE--ETTTSCGGG-HHHHSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHc----C----Cccc--CCCccCHHH-HHHhCCC
Confidence            8999999853 4345 5565 543344 999999988   77777542    2    2322  443333332 2111247


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-.-.-          ...+..+.++|++||+++..
T Consensus       243 ~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          243 MDFIYEATGF----------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             EEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            9999755421          12466777899999999876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.38  E-value=0.97  Score=42.15  Aligned_cols=104  Identities=13%  Similarity=0.047  Sum_probs=69.3

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ..+|+=+|||. |..+...+......|+++|.+++.++.+++.    +    +..+.+|+++.......  .-...|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----g----~~vi~GDat~~~~L~~a--gi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA--GAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----T----CCCEESCTTCHHHHHHT--TTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----C----CeEEEcCCCCHHHHHhc--CCCccCEEE
Confidence            45789999986 4444454544555899999999999887642    2    55789999886543322  235788877


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      +..      .+. .....+-...+.+.|...++...-+....
T Consensus        74 v~~------~~~-~~n~~i~~~ar~~~p~~~Iiara~~~~~~  108 (413)
T 3l9w_A           74 NAI------DDP-QTNLQLTEMVKEHFPHLQIIARARDVDHY  108 (413)
T ss_dssp             ECC------SSH-HHHHHHHHHHHHHCTTCEEEEEESSHHHH
T ss_pred             ECC------CCh-HHHHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence            544      222 23444556667788988888877776544

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=90.31  E-value=0.46  Score=42.87  Aligned_cols=98  Identities=12%  Similarity=0.005  Sum_probs=61.8

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhhh-cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE-KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~-~~~~~~~~~~-~~~  104 (312)
                      +.++.+||-+|++  .|..+..+++....+|+++|.+++.++.+++.    +    +.. ..|.. ...+...+.. ..+
T Consensus       167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~----g----~~~-~~d~~~~~~~~~~~~~~~~~  237 (347)
T 2hcy_A          167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI----G----GEV-FIDFTKEKDIVGAVLKATDG  237 (347)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT----T----CCE-EEETTTCSCHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc----C----Cce-EEecCccHhHHHHHHHHhCC
Confidence            4578999999984  44455555555455999999998888766542    2    111 12444 2233222211 123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+.....          ...++.+.+.|++||+++..
T Consensus       238 ~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          238 GAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             CEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             CCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence            79999876531          23577788999999999865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.28  E-value=0.67  Score=41.95  Aligned_cols=96  Identities=11%  Similarity=-0.075  Sum_probs=59.5

Q ss_pred             CCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCc
Q 021467           30 HPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~  105 (312)
                      .++.+||-.|++  -|..+..+++....+|+++|.+++.++.+++.    +    +. ...|..+......+..  ....
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g----~~-~~~~~~~~~~~~~~~~~~~~~~  231 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----G----AA-AGFNYKKEDFSEATLKFTKGAG  231 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----T----CS-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C----Cc-EEEecCChHHHHHHHHHhcCCC
Confidence            478899999853  34445555555556999999999888877432    1    11 1123333333222211  1247


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+....-.           .+....++|++||.++..
T Consensus       232 ~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          232 VNLILDCIGGS-----------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             EEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred             ceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence            99998665321           255667899999999876

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=89.99  E-value=0.85  Score=41.49  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=60.5

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhhh-cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~-~~  103 (312)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++.++.+++.-..       ..  .|..+  .++.+.+.. ..
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~-------~v--i~~~~~~~~~~~~v~~~~~  258 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------EC--INPQDFSKPIQEVLIEMTD  258 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EE--ECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-------eE--eccccccccHHHHHHHHhC
Confidence            34789999999864 4445555554 444899999999988887643211       11  12221  222222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+..-.-          ...+..+.++|++| |+++..
T Consensus       259 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          259 GGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence            479999865421          23467778899999 999865

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.88  E-value=1.2  Score=39.89  Aligned_cols=97  Identities=21%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             cCCCCEEEEECC--CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGC--G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|+  |-|..+..+++....+|+++|.+++.++.+++.    +    +.. ..|..+.+....+..  ...
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~----g----~~~-~~d~~~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKL----G----CHH-TINYSTQDFAEVVREITGGK  213 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----T----CSE-EEETTTSCHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CCE-EEECCCHHHHHHHHHHhCCC
Confidence            347889999996  345455555555455999999999888877652    1    111 124443333222211  134


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..++.+.++|++||+++..
T Consensus       214 ~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          214 GVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             CEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             CCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence            79999866532           2366777899999998866

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=89.76  E-value=0.82  Score=41.54  Aligned_cols=97  Identities=12%  Similarity=0.000  Sum_probs=61.4

Q ss_pred             cCCCCEEEEEC-CC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlG-CG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      +.++.+||-.| +| -|..+..+++....+|+++|.+++.++.+++.    +.   ...+  |..+.++...+.. ....
T Consensus       161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~--~~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSL----GC---DRPI--NYKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC---SEEE--ETTTSCHHHHHHHHCTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc----CC---cEEE--ecCChhHHHHHHHhcCCC
Confidence            45789999999 33 45555666665555899999999888777652    21   1112  3223333222221 1357


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+....-           ..+..+.++|++||+++..
T Consensus       232 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          232 VDVVYESVGG-----------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             EEEEEECSCT-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             CCEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            9999865531           2467778899999998866

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=89.75  E-value=0.82  Score=41.65  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=60.4

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhhh-cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~-~~  103 (312)
                      +.++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-..       ..+  |..+  .++.+.+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi--~~~~~~~~~~~~i~~~t~  259 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECL--NPKDYDKPIYEVICEKTN  259 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEE--CGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-------EEE--ecccccchHHHHHHHHhC
Confidence            45789999999864 4445555555 444899999999988877642111       111  2221  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+-.-.-          ...+....++|++| |+++..
T Consensus       260 gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          260 GGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence            479999865421          23467777899999 999865

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=89.72  E-value=0.29  Score=44.19  Aligned_cols=95  Identities=15%  Similarity=0.036  Sum_probs=59.2

Q ss_pred             CCCEEEEECCCC-CccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhhhcCCce
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~~~~f  106 (312)
                      ++.+||-+|+|. |..+..+++..  ..+|+++|.+++-++.+++.-..       ..+  |..+ .+....+. ....+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~vi--~~~~~~~~~~~~~-~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGAD-------YVS--EMKDAESLINKLT-DGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCS-------EEE--CHHHHHHHHHHHH-TTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCC-------EEe--ccccchHHHHHhh-cCCCc
Confidence            789999999963 44455555554  56899999999988887653211       111  2111 11111121 12379


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+..-.-          ...+..+.++|++||+++..
T Consensus       240 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          240 SIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             EEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             cEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            999865531          22467777899999998865

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.64  E-value=0.95  Score=41.21  Aligned_cols=98  Identities=16%  Similarity=0.129  Sum_probs=60.3

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhhh-cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~-~~  103 (312)
                      +.++.+||-+|+|. |..+..+++.... +|+++|.+++.++.+++.-.       ...  .|..+  .++.+.+.. ..
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa-------~~v--i~~~~~~~~~~~~~~~~~~  259 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-------TEC--VNPQDYKKPIQEVLTEMSN  259 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEE--ECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC-------ceE--ecccccchhHHHHHHHHhC
Confidence            34789999999864 4455566655444 89999999998887754311       111  22221  223222211 12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+..-.-          ...+....++|++| |+++..
T Consensus       260 ~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          260 GGVDFSFEVIGR----------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCcEEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence            479998755421          23466777899999 999865

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.53  E-value=0.69  Score=41.22  Aligned_cols=97  Identities=15%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|++  -|..+..+++....+|+++|.+++.++.+++.    +    +.. ..|..+......+..  ...
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g----~~~-~~~~~~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----G----AWQ-VINYREEDLVERLKEITGGK  208 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----T----CSE-EEETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----C----CCE-EEECCCccHHHHHHHHhCCC
Confidence            3478899999943  34444555554445999999999888877652    1    111 124433333222211  124


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..++.+.++|++||+++..
T Consensus       209 ~~D~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          209 KVRVVYDSVGR-----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             CEEEEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCch-----------HHHHHHHHHhcCCCEEEEE
Confidence            69999876641           2366777899999998865

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=89.48  E-value=1  Score=41.03  Aligned_cols=98  Identities=14%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhh-hcC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQ-EKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~-~~~  103 (312)
                      +.++.+||-+|+|. |..+..+++... .+|+++|.+++-++.+++.-..       ..  .|..+  .++.+.+. ...
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~v--i~~~~~~~~~~~~v~~~~~  263 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-------DC--LNPRELDKPVQDVITELTA  263 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EE--ECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc-------EE--EccccccchHHHHHHHHhC
Confidence            34789999999864 444556665544 4899999999988877643111       11  12221  22222221 112


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+-.-.-          ...+....++|++| |+++..
T Consensus       264 ~g~Dvvid~~G~----------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          264 GGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             SCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCccEEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence            479999855421          23467778899999 999865

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=89.46  E-value=12  Score=33.74  Aligned_cols=188  Identities=14%  Similarity=0.138  Sum_probs=105.0

Q ss_pred             CcchHHhHHHHHHHHHHHHh----cC---CCCEEEEECCCCCccHHHHHH--c--CCCeEEEEeCChHHHHHHHHHHHhc
Q 021467            9 SELTHHRLYEFAKTALIKIY----SH---PYVTVCDLYCGAGVDVDKWET--A--LIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus         9 ~~~~~~~~~n~vk~~li~~~----~~---~~~~VLDlGCG~G~~l~~~~~--~--~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      +.+|...---|+....|+..    +.   +...|+-||||-  |+..|..  .  ....++=+|.-+ .++.=++.+...
T Consensus        61 rr~P~inrG~~~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGl--DTr~~RL~~~~~~~~~~~EVD~P~-vi~~K~~~l~~~  137 (334)
T 3iei_A           61 RKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGM--DTTFWRLKDEDLLSSKYFEVDFPM-IVTRKLHSIKCK  137 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEETCTT--CCHHHHHHHTTCCCSEEEEEECHH-HHHHHHHHHHHC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc--CchHHHhcCCCCCCCeEEECCcHH-HHHHHHHHHhhc
Confidence            45565444445555444433    22   457899999998  4544432  2  234666666633 333222222210


Q ss_pred             C----------------------CCceEEEEEcCCCCCc-hhhhhhh---cCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 021467           78 R----------------------KNFIAEFFEADPCAEN-FETQMQE---KANQADLVCCFQHLQMCFETEERARRLLQN  131 (312)
Q Consensus        78 ~----------------------~~~~~~f~~~D~~~~~-~~~~~~~---~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~  131 (312)
                      +                      ...+..++.+|+.+.. +...+..   ....--++++-.++.|  .+.+....+++.
T Consensus       138 ~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~Y--L~~~~~~~ll~~  215 (334)
T 3iei_A          138 PPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVY--MTPEQSANLLKW  215 (334)
T ss_dssp             HHHHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHH
T ss_pred             hhhhhhhcccccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhC--CCHHHHHHHHHH
Confidence            0                      0234788899987742 2222211   1234557888888888  779999999999


Q ss_pred             HHhccCCCcEEEEEecCh-hHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccc
Q 021467          132 VSSLLKPGGYFLGITPDS-STIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDI  210 (312)
Q Consensus       132 i~~~LkpGG~~i~~~p~~-~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~  210 (312)
                      +.+...+|..++.-..+. +..-+.+.++..   ..|                           .|..|          .
T Consensus       216 ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~---~~g---------------------------~pl~s----------l  255 (334)
T 3iei_A          216 AANSFERAMFINYEQVNMGDRFGQIMIENLR---RRQ---------------------------CDLAG----------V  255 (334)
T ss_dssp             HHHHCSSEEEEEEEECCTTSHHHHHHHHHHH---TTT---------------------------CCCTT----------G
T ss_pred             HHHhCCCceEEEEeccCCCCHHHHHHHHHHH---HhC---------------------------CCCcc----------c
Confidence            999886554444333332 222222222221   111                           01111          1


Q ss_pred             cCCCccccchHHHHHHHHHcCcEEEEecCchHHHH
Q 021467          211 SAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYD  245 (312)
Q Consensus       211 ~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~  245 (312)
                      ..    --+.+...+.+.++|++.+...+..++|+
T Consensus       256 ~~----y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~  286 (334)
T 3iei_A          256 ET----CKSLESQKERLLSNGWETASAVDMMELYN  286 (334)
T ss_dssp             GG----GGCHHHHHHHHHTTTCSEEEEEEHHHHHH
T ss_pred             cc----CCCHHHHHHHHHHcCCCcceeecHHHHHH
Confidence            01    12567778888999999999999999995

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=89.36  E-value=0.68  Score=41.45  Aligned_cols=97  Identities=12%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||-.|++  -|..+..+++....+|+++|.+++-++.+++.-.       ...  .|..+.++...+..  ...
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-------~~~--~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA-------EYL--INASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------SEE--EETTTSCHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------cEE--EeCCCchHHHHHHHHhCCC
Confidence            3478999999953  3444555555555699999999988887755311       111  23333333322221  135


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-           ..+..+.++|++||+++..
T Consensus       217 g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          217 GVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             CEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             CceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            79999866532           2366677899999999876

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.14  E-value=0.67  Score=41.72  Aligned_cols=98  Identities=16%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             hcCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~  103 (312)
                      ...++.+||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-..       ..+..+  . ++.+.+..  ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~-------~~i~~~--~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD-------AAVKSG--A-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS-------EEEECS--T-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC-------EEEcCC--C-cHHHHHHHHhCC
Confidence            356889999999864 4455555554 467999999999988887653211       122221  1 22222111  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-          ...+....++|++||+++..
T Consensus       238 ~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          238 QGATAVFDFVGA----------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             GCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCeEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            479999865421          23567778899999999876

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=89.06  E-value=0.37  Score=43.41  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=59.1

Q ss_pred             CCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD  107 (312)
                      ++.+||-+|+|. |..+..+++.... +|+++|.+++-++.+++. ..       .  ..|..+.++...+.. ....+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~-------~--v~~~~~~~~~~~~~~~~~~g~D  233 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD-------R--LVNPLEEDLLEVVRRVTGSGVE  233 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS-------E--EECTTTSCHHHHHHHHHSSCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH-------h--ccCcCccCHHHHHHHhcCCCCC
Confidence            788999999853 4445555555444 899999998776665442 11       1  123333333322211 135799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+..-.-          ...++...++|++||+++..
T Consensus       234 ~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          234 VLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             EEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            99865431          23466777899999998865

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=89.01  E-value=0.71  Score=41.75  Aligned_cols=98  Identities=11%  Similarity=-0.048  Sum_probs=61.2

Q ss_pred             cCCC--CEEEEECCCC--CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-c
Q 021467           29 SHPY--VTVCDLYCGA--GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-K  102 (312)
Q Consensus        29 ~~~~--~~VLDlGCG~--G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~  102 (312)
                      +.++  .+||-.|++.  |..+..+++.... +|+++|.+++.++.+++.+   +    +. ...|..+......+.. .
T Consensus       156 ~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---g----~~-~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          156 ITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---G----FD-AAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             CCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---C----CS-EEEETTTSCHHHHHHHHC
T ss_pred             CCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---C----Cc-eEEecCchHHHHHHHHhc
Confidence            4578  8999999843  4444555555455 9999999988777766533   2    11 1224433333222221 1


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+.+|+|+....-           ..+..+.++|++||+++..
T Consensus       228 ~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          228 PAGVDVYFDNVGG-----------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TTCEEEEEESCCH-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCCEEEECCCH-----------HHHHHHHHHhccCcEEEEE
Confidence            2379999866531           3467778899999999865

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=88.92  E-value=0.29  Score=44.49  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~~~~f  106 (312)
                      +.++.+||-+|+|. |..+..+++....+|+++|.+++-++.+++.-.       ...+  |..+. ++...+   .+.+
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~v~--~~~~~~~~~~~~---~~~~  244 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA-------DHYI--ATLEEGDWGEKY---FDTF  244 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-------SEEE--EGGGTSCHHHHS---CSCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------CEEE--cCcCchHHHHHh---hcCC
Confidence            45789999999854 444555555544489999999998888765311       1112  22122 222212   1579


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+....--.        ...+..+.++|++||+++..
T Consensus       245 D~vid~~g~~~--------~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          245 DLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             CEEEECCCCCc--------HHHHHHHHHHhcCCCEEEEe
Confidence            99986553200        11245567799999998865

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=88.84  E-value=0.6  Score=42.78  Aligned_cols=100  Identities=20%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhhhhh--cC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQMQE--KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~-~~~~~~~~~~--~~  103 (312)
                      +.++.+||-+|+|. |..+..+++... .+|+++|.+++-++.+++.    +.   -..+..+.. +.++.+.+..  ..
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~~~~v~~~~~g  265 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA---DLTLNRRETSVEERRKAIMDITHG  265 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc----CC---cEEEeccccCcchHHHHHHHHhCC
Confidence            45789999999763 444555555544 5999999999988877642    21   112221100 1122222211  12


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-          ...+....++|++||+++..
T Consensus       266 ~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          266 RGADFILEATGD----------SRALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            379999865431          12366677899999999865

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=88.76  E-value=0.75  Score=42.01  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=60.7

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC--CCchhhhhh-hcC
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC--AENFETQMQ-EKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~--~~~~~~~~~-~~~  103 (312)
                      +.++.+||=+|+|. |..+..+++. +..+|+++|.+++-++.|++.-.       ...  .|..  ..++...+. ...
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa-------~~v--i~~~~~~~~~~~~i~~~~~  261 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV-------NEF--VNPKDHDKPIQEVIVDLTD  261 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC-------CEE--ECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC-------cEE--EccccCchhHHHHHHHhcC
Confidence            34788999999864 4455555555 44589999999998887764311       111  2222  222322221 123


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +.+|+|+-.-.-          ...+....++|++| |+++..
T Consensus       262 gg~D~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          262 GGVDYSFECIGN----------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCEEEECCCC----------HHHHHHHHHHhhccCCEEEEE
Confidence            489999865421          23467778899997 999876

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=88.74  E-value=1.5  Score=39.48  Aligned_cols=95  Identities=16%  Similarity=0.140  Sum_probs=59.4

Q ss_pred             CCCEEEEEC-CCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCcee
Q 021467           31 PYVTVCDLY-CGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlG-CG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~fD  107 (312)
                      ++.+||=.| +|. |..+..+++....+|+++|.+++-++.+++.-..       ..  .|..+ ++...+. .....+|
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-------~v--i~~~~-~~~~~~~~~~~~g~D  219 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD-------IV--LNHKE-SLLNQFKTQGIELVD  219 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS-------EE--ECTTS-CHHHHHHHHTCCCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc-------EE--EECCc-cHHHHHHHhCCCCcc
Confidence            688999994 543 4455555555555999999999988888763211       11  22222 2322221 1235799


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+....          ....+..+.++|++||+++..
T Consensus       220 vv~d~~g----------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          220 YVFCTFN----------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEESSC----------HHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence            9986442          233567777899999999765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.67  E-value=4.4  Score=34.53  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~  103 (312)
                      .+.++|=.|++.|-   .+..+++ ...+|+.+|.+++.++...+....     ++.++.+|+.+..-...    .....
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVE-GGAEVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHHh
Confidence            45789989987662   2233333 345999999999888877666532     38899999987532111    11123


Q ss_pred             CceeEEEeccchhhh----cCCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMC----FETEERARR-----------LLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~----~~~~~~~~~-----------~l~~i~~~LkpGG~~i~~  145 (312)
                      +..|+++.+......    -.+.++.+.           +++.+...++.+|.++.+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            689998876553211    013444332           345566667778888776

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=88.63  E-value=0.73  Score=41.48  Aligned_cols=96  Identities=15%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||=.|++  -|..+..+++....+|+++|.+++.++.+++.-.       ...+..+   .++...+..  ...
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga-------~~v~~~~---~~~~~~v~~~~~~~  226 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA-------DIVLPLE---EGWAKAVREATGGA  226 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC-------SEEEESS---TTHHHHHHHHTTTS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-------cEEecCc---hhHHHHHHHHhCCC
Confidence            3478999999983  3445556666555599999999988887766321       1122222   233222211  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....-.           .+..+.++|++||.++..
T Consensus       227 g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          227 GVDMVVDPIGGP-----------AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             CEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEECCchh-----------HHHHHHHhhcCCCEEEEE
Confidence            799998655321           366777899999999876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=88.52  E-value=0.72  Score=41.95  Aligned_cols=92  Identities=13%  Similarity=0.068  Sum_probs=56.8

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCCh---HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~---~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      +.+||-+|+|. |..+..+++....+|+++|.++   +-++.+++.    +    +..+  | .+ ++.+.+....+.+|
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~----g----a~~v--~-~~-~~~~~~~~~~~~~d  248 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET----K----TNYY--N-SS-NGYDKLKDSVGKFD  248 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH----T----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh----C----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence            89999999842 3344455554334999999998   777666542    2    2222  3 33 32222211125799


Q ss_pred             EEEeccchhhhcCCHHHHHHHH-HHHHhccCCCcEEEEE
Q 021467          108 LVCCFQHLQMCFETEERARRLL-QNVSSLLKPGGYFLGI  145 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l-~~i~~~LkpGG~~i~~  145 (312)
                      +|+......          ..+ +.+.+.|++||.++..
T Consensus       249 ~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          249 VIIDATGAD----------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             EEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred             EEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence            998765321          134 7778899999999876

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=87.93  E-value=2.1  Score=38.34  Aligned_cols=98  Identities=13%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             cCCCCEEEEECCCCCcc-HHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGAGVD-VDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~-l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      ..++.+||=+|+|.++. +..+++ .+..+|+++|.+++-++.+++.-..       ..  .|..+.+..+.+..  ...
T Consensus       161 ~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~-------~~--i~~~~~~~~~~v~~~t~g~  231 (348)
T 4eez_A          161 VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD-------VT--INSGDVNPVDEIKKITGGL  231 (348)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS-------EE--EEC-CCCHHHHHHHHTTSS
T ss_pred             CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe-------EE--EeCCCCCHHHHhhhhcCCC
Confidence            45889999999987543 333343 3677999999999877766654321       11  12233333322221  123


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|.++....          ....+....+.|++||.++..
T Consensus       232 g~d~~~~~~~----------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          232 GVQSAIVCAV----------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             CEEEEEECCS----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CceEEEEecc----------CcchhheeheeecCCceEEEE
Confidence            5666654321          123466777899999998876

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=87.50  E-value=0.35  Score=42.68  Aligned_cols=92  Identities=15%  Similarity=0.060  Sum_probs=58.6

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhhhcCCc
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~~~~  105 (312)
                      +.++.+||-+|++  .|..+..+++....+|+++|.+++.++.+++.    +.   ...  .|..+ .++.+.+    ..
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~~--~~~~~~~~~~~~~----~~  189 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLAL----GA---EEA--ATYAEVPERAKAW----GG  189 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHT----TC---SEE--EEGGGHHHHHHHT----TS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc----CC---CEE--EECCcchhHHHHh----cC
Confidence            6688999999983  34455566655555999999999888777542    21   011  12221 1221111    57


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+. ..-           ..++...++|++||+++..
T Consensus       190 ~d~vid-~g~-----------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VRG-----------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEEEE-CSC-----------TTHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEE-CCH-----------HHHHHHHHhhccCCEEEEE
Confidence            999987 432           1366778899999998865

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=87.38  E-value=3.6  Score=32.01  Aligned_cols=105  Identities=7%  Similarity=-0.038  Sum_probs=59.8

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCC-hHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis-~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..+|+=+|||. |..+...+......|+.+|.+ ++..+....... .+    +.++.+|..+.......  .-...|+|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-~~----~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DN----ADVIPGDSNDSSVLKKA--GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TT----CEEEESCTTSHHHHHHH--TTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-CC----CeEEEcCCCCHHHHHHc--ChhhCCEE
Confidence            35688888764 222233333344589999997 454444433322 12    67889998764432211  13568888


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ++...      + +.....+....+.+.|...++...-+..
T Consensus        76 i~~~~------~-d~~n~~~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           76 LALSD------N-DADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             EECSS------C-HHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             EEecC------C-hHHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence            76542      1 2244455566677777777777655543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=86.88  E-value=1.7  Score=39.24  Aligned_cols=97  Identities=11%  Similarity=-0.002  Sum_probs=61.1

Q ss_pred             cCCCCEEEEECC-C-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      +.++.+||-.|+ | -|..+..+++....+|+++|.+++.++.+++.-.       ...  .|..+.++...+.. ....
T Consensus       165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa-------~~~--~~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA-------KRG--INYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC-------SEE--EETTTSCHHHHHHHHHSSC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-------CEE--EeCCchHHHHHHHHHhCCC
Confidence            347899999953 3 3445556666555699999999998887765321       111  23333333222211 1457


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+....-.           .+....+.|++||.++..
T Consensus       236 ~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          236 VDIILDMIGAA-----------YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             EEEEEESCCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence            99998765321           356677899999999866

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.77  E-value=7.6  Score=33.32  Aligned_cols=113  Identities=14%  Similarity=-0.002  Sum_probs=67.6

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCC------------hHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA------------TSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis------------~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      .+.+||=.|++.|-   .+..++. ...+|+.+|.+            .+.++.+.......+  .++.++.+|+.+..-
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~-~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAE-EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHH-CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            45689999987652   2233333 44589999987            666766666554432  348899999987532


Q ss_pred             hh----hhhhcCCceeEEEeccchhhh--cCCHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 021467           96 ET----QMQEKANQADLVCCFQHLQMC--FETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        96 ~~----~~~~~~~~fD~V~~~~~lh~~--~~~~~~~~-----------~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ..    ......+..|+++.+.+....  ..+.++.+           .+++.+...++.+|.++.+.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            11    111123579998887653211  02233332           34456667778888887663

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=86.70  E-value=3.8  Score=30.79  Aligned_cols=101  Identities=11%  Similarity=-0.015  Sum_probs=55.2

Q ss_pred             CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +.+|+=+|+|. |..+...+.....+|+++|.+++.++..++..   +    +.++.+|..+......  .....+|+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~---~----~~~~~~d~~~~~~l~~--~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLED--AGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHH--TTTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---C----cEEEEcCCCCHHHHHH--cCcccCCEEE
Confidence            36788899875 32333333333458999999988776554322   2    4566777654322110  1124689887


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +.-.-      . .....+..+.+.+.++ .++....+.
T Consensus        75 ~~~~~------~-~~~~~~~~~~~~~~~~-~ii~~~~~~  105 (140)
T 1lss_A           75 AVTGK------E-EVNLMSSLLAKSYGIN-KTIARISEI  105 (140)
T ss_dssp             ECCSC------H-HHHHHHHHHHHHTTCC-CEEEECSST
T ss_pred             EeeCC------c-hHHHHHHHHHHHcCCC-EEEEEecCH
Confidence            65421      1 1233444556667775 555544433

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=86.63  E-value=7.8  Score=32.91  Aligned_cols=113  Identities=5%  Similarity=-0.043  Sum_probs=67.4

Q ss_pred             CCCEEEEECCC--CC--cc-HHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhh
Q 021467           31 PYVTVCDLYCG--AG--VD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG--~G--~~-l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~  101 (312)
                      .+.+||=.|++  .|  .. +..++. ...+|+.+|.+....+.+.+.....+ ..++.++.+|+.+..-...    +..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE-AGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH-CCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            45688989976  44  22 233333 44589999998766665555544332 1248899999988642211    111


Q ss_pred             cCCceeEEEeccchhh--------hcCCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQHLQM--------CFETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~--------~~~~~~~~~-----------~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+..|+++...++..        .-.+.+...           .+++.+...++++|.++.+
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            2357898887654321        012344333           3556677788888988876

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=86.54  E-value=7.7  Score=33.36  Aligned_cols=136  Identities=13%  Similarity=-0.043  Sum_probs=68.8

Q ss_pred             CCCcchHHhHHHHHHHHHHHHhcCCCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCC-hHHHHHHHHHHHhcCCCce
Q 021467            7 PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGV---DVDKWETALIANYIGIDVA-TSGIGEARDTWENQRKNFI   82 (312)
Q Consensus         7 ~R~~~~~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis-~~~i~~a~~r~~~~~~~~~   82 (312)
                      +|+..+.+...|.....+.....-.+.++|=.|++.|-   .+..++. ...+|+.+|.. .+.++...+.....+  .+
T Consensus         6 ~~~~~~~~~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~   82 (271)
T 3v2g_A            6 HHSSGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAAERAQAVVSEIEQAG--GR   82 (271)
T ss_dssp             --------------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHHTT--CC
T ss_pred             cccccccccccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhcC--Cc
Confidence            34455544444433333333332357789999987762   2233333 34588888665 455555555554432  24


Q ss_pred             EEEEEcCCCCCchhh----hhhhcCCceeEEEeccchhhh----cCCHHHHH-----------HHHHHHHhccCCCcEEE
Q 021467           83 AEFFEADPCAENFET----QMQEKANQADLVCCFQHLQMC----FETEERAR-----------RLLQNVSSLLKPGGYFL  143 (312)
Q Consensus        83 ~~f~~~D~~~~~~~~----~~~~~~~~fD~V~~~~~lh~~----~~~~~~~~-----------~~l~~i~~~LkpGG~~i  143 (312)
                      +.++.+|+.+..-..    ......+..|+++.+.+....    -.+.++.+           .+++.+...++.+|.++
T Consensus        83 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv  162 (271)
T 3v2g_A           83 AVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRII  162 (271)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEE
Confidence            788999998754211    111123579998886653210    02333332           34566677788888888


Q ss_pred             EE
Q 021467          144 GI  145 (312)
Q Consensus       144 ~~  145 (312)
                      .+
T Consensus       163 ~i  164 (271)
T 3v2g_A          163 TI  164 (271)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.53  E-value=0.72  Score=40.93  Aligned_cols=88  Identities=11%  Similarity=-0.070  Sum_probs=55.5

Q ss_pred             CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+||=+|+|. |..+..+++....+|+++| +++-++.+++.-        +..+.-|     . +.+   ...+|+
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lG--------a~~v~~d-----~-~~v---~~g~Dv  202 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRG--------VRHLYRE-----P-SQV---TQKYFA  202 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHT--------EEEEESS-----G-GGC---CSCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcC--------CCEEEcC-----H-HHh---CCCccE
Confidence            4789999999953 4455566665445999999 988888776532        2222212     1 112   468999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+-.-.-           ..+....++|++||+++...
T Consensus       203 v~d~~g~-----------~~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          203 IFDAVNS-----------QNAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EECC------------------TTGGGEEEEEEEEEEC
T ss_pred             EEECCCc-----------hhHHHHHHHhcCCCEEEEEe
Confidence            8754321           11245678999999998773

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=86.35  E-value=1.9  Score=33.81  Aligned_cols=104  Identities=10%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             CCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ++.+|+=+|||. |..+...+.....+|+++|.+++.++.++.   ..+    +..+.+|..+.......  .-..+|+|
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~~~l~~~--~~~~ad~V   88 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEFETLKEC--GMEKADMV   88 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TCC----SEEEESCTTSHHHHHTT--TGGGCSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cCC----CcEEEecCCCHHHHHHc--CcccCCEE
Confidence            567999999986 434444444444589999999875543321   112    44566776542211100  12468988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      +..-.      +.. ....+..+.+.+.+...++...-+..
T Consensus        89 i~~~~------~~~-~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           89 FAFTN------DDS-TNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             EECSS------CHH-HHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             EEEeC------CcH-HHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            76542      122 33344445566666677777655543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=84.88  E-value=4.7  Score=35.86  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             CEEEEECCCC-CccHH-HHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           33 VTVCDLYCGA-GVDVD-KWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l~-~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+|.=||+|. |+.+. .+...+. .+|+++|.+++.++.+.+.    +.   +.-...|..+. .       -...|+|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~---~~~~~~~~~~~-~-------~~~aDvV   98 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-E-------DFSPDFV   98 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCTTGG-G-------GGCCSEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CC---cchhcCCHHHH-h-------hccCCEE
Confidence            6899999985 43333 3333343 2899999999888776542    21   10112222110 1       1458988


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~  158 (312)
                      +..-....       ...+++.+...|++|.+++-.......+.+.+.+
T Consensus        99 ilavp~~~-------~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~  140 (314)
T 3ggo_A           99 MLSSPVRT-------FREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  140 (314)
T ss_dssp             EECSCGGG-------HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             EEeCCHHH-------HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH
Confidence            86654433       5677888999999988766443333344444443

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=84.32  E-value=6.1  Score=34.18  Aligned_cols=83  Identities=8%  Similarity=-0.065  Sum_probs=53.9

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chh----hhhhhc
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFE----TQMQEK  102 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~----~~~~~~  102 (312)
                      .+.+||=.|++.|-   .+..++. ...+|++++.+...++.+.+.+...+ ..++.++.+|+.+. ...    ..+...
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSS-NGIMVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45688888877651   2233333 34599999999998888777765532 22488999999886 321    112122


Q ss_pred             CCceeEEEeccch
Q 021467          103 ANQADLVCCFQHL  115 (312)
Q Consensus       103 ~~~fD~V~~~~~l  115 (312)
                      .+..|+++.+.++
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            3679999887764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=84.20  E-value=1.9  Score=39.82  Aligned_cols=59  Identities=5%  Similarity=-0.050  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc--------CCCeEEEEeCChHHHHHHHHHHHh
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~--------~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      .|+.......-.+...+|+|+|.|+|..+..++..        ...+|+.||+|+...+.-++++..
T Consensus        67 ~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           67 LWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            45444333322334568999999999876655432        234899999999988766666543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=83.71  E-value=1.4  Score=43.70  Aligned_cols=123  Identities=13%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----------C--CCeEEEEeC---ChHHHHHHHHHHH-----------hc------
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----------L--IANYIGIDV---ATSGIGEARDTWE-----------NQ------   77 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----------~--~~~v~giDi---s~~~i~~a~~r~~-----------~~------   77 (312)
                      +..+|||+|.|+|.......+.           .  ..+++.++.   +.+-+..|-..+.           .-      
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4469999999999644322221           1  147999998   5555554332211           10      


Q ss_pred             -------CCCceEEEEEcCCCCCchhhhhhh-cCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           78 -------RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        78 -------~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                             .....++++.+|+.+. + ..+.. ....+|+++.-. +-+.  ..+--...++..+.++++|||.+. +...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~-l-~~~~~~~~~~~da~flD~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~-t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTL-L-PTLDDSLNNQVDAWFLDGFAPAK--NPDMWNEQLFNAMARMTRPGGTFS-TFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHH-G-GGCCGGGTTCEEEEEECSSCC----CCTTCSHHHHHHHHHHEEEEEEEE-ESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHH-H-hhcccccCCceeEEEECCCCCCC--ChhhhhHHHHHHHHHHhCCCCEEE-eccC
Confidence                   0123566777776431 1 11110 147899998732 2111  000012678899999999999865 4444


Q ss_pred             hhHHHHHHHH
Q 021467          149 SSTIWAKYQK  158 (312)
Q Consensus       149 ~~~l~~~~~~  158 (312)
                      ...+.+.+.+
T Consensus       213 ~~~vr~~l~~  222 (689)
T 3pvc_A          213 AGFVRRGLQQ  222 (689)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            4555555543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=83.71  E-value=0.79  Score=41.14  Aligned_cols=63  Identities=14%  Similarity=0.127  Sum_probs=42.9

Q ss_pred             EEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhc----C------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCF----E------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        83 ~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~----~------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..++++|+... + ..+  ++++||+|++.-......    .      -...+...++++.++|+|||.+++.+.+.
T Consensus        15 ~~ii~gD~~~~-l-~~l--~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           15 GSMYIGDSLEL-L-ESF--PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             EEEEESCHHHH-G-GGS--CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             ceEEeCcHHHH-H-hhC--CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            67888887541 1 112  457899999975432110    0      02356788999999999999999987765

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=83.70  E-value=2.2  Score=42.16  Aligned_cols=123  Identities=14%  Similarity=0.207  Sum_probs=67.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-----------C--CCeEEEEeC---ChHHHHHHHHHHHh-----------cC-----
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-----------L--IANYIGIDV---ATSGIGEARDTWEN-----------QR-----   78 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-----------~--~~~v~giDi---s~~~i~~a~~r~~~-----------~~-----   78 (312)
                      +..+|||+|-|+|-.+....+.           .  .-++++++.   +.+.+..+-..+.+           -.     
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            4469999999999644322211           1  136999998   77777754432111           00     


Q ss_pred             --------CCceEEEEEcCCCCCchhhhhhh-cCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           79 --------KNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        79 --------~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                              ....+++..+|+.+. + ..+.. ....||+|..-. +-.-  ..+---..+++.+.++++|||.+.- ...
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~-l-~~~~~~~~~~~d~~~~D~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~t-~~~  220 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINEL-T-SQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLAT-FTS  220 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHH-G-GGBCGGGTTCEEEEEECCSCGGG--CGGGSCHHHHHHHHHHEEEEEEEEE-SCC
T ss_pred             ceEEEecCCcEEEEEecCCHHHH-H-HhcccccCCcccEEEECCCCCcC--ChhhhhHHHHHHHHHHhCCCCEEEe-ccC
Confidence                    013455666665431 1 11110 146799998732 1110  0000136688999999999998663 333


Q ss_pred             hhHHHHHHHH
Q 021467          149 SSTIWAKYQK  158 (312)
Q Consensus       149 ~~~l~~~~~~  158 (312)
                      ...+.+.+.+
T Consensus       221 ~~~vr~~L~~  230 (676)
T 3ps9_A          221 AGFVRRGLQD  230 (676)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            4455555543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.14  E-value=15  Score=31.83  Aligned_cols=113  Identities=14%  Similarity=0.066  Sum_probs=65.6

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhc
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK  102 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~-i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~  102 (312)
                      .+.+||=.|++.|-   .+..++. ...+|+.+|.+... .+.+.+..+..+  .++.++.+|+.+..-..    .....
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAK-EGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35689999987652   2233333 44589999998763 333433333322  34889999998753211    11112


Q ss_pred             CCceeEEEeccchhhh---c--CCHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 021467          103 ANQADLVCCFQHLQMC---F--ETEERAR-----------RLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~---~--~~~~~~~-----------~~l~~i~~~LkpGG~~i~~~  146 (312)
                      .+..|+++.+.+....   +  .+.++.+           .+++.+...++.+|.++.+.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence            3579998876543211   1  1344333           34556677788889887763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.10  E-value=6.8  Score=34.81  Aligned_cols=98  Identities=9%  Similarity=-0.001  Sum_probs=59.7

Q ss_pred             cCCCCEEEEECCCCCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      ..++.+||=.|+|..+ .+..+++. +...++++|.+++-++.|++.-..       ..+  |..+.+..+...  ....
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~-------~~i--~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAM-------QTF--NSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEE--ETTTSCHHHHHHHHGGGC
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCe-------EEE--eCCCCCHHHHHHhhcccC
Confidence            4578999999997644 33344444 566789999999988877654211       122  222222221111  1235


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+..-.          ....+....++|++||.++..
T Consensus       229 g~d~v~d~~G----------~~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          229 FNQLILETAG----------VPQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             SSEEEEECSC----------SHHHHHHHHHHCCTTCEEEEC
T ss_pred             Cccccccccc----------ccchhhhhhheecCCeEEEEE
Confidence            6888875442          123466677899999999876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=82.72  E-value=9.2  Score=33.29  Aligned_cols=111  Identities=9%  Similarity=-0.100  Sum_probs=65.4

Q ss_pred             CCCEEEEECCCC--C--c-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhh
Q 021467           31 PYVTVCDLYCGA--G--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQE  101 (312)
Q Consensus        31 ~~~~VLDlGCG~--G--~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~  101 (312)
                      .+.+||=.|++.  |  . .+..++. ...+|+.+|.++...+.+.+.....+.   +.++.+|+.+..-...    ...
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~-~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCA-QGAEVALTYLSETFKKRVDPLAESLGV---KLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHHHHHTC---CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHH-CCCEEEEEeCChHHHHHHHHHHHhcCC---eEEEEcCCCCHHHHHHHHHHHHH
Confidence            356899999753  3  2 2233333 445899999998765555554443332   5788999987542111    111


Q ss_pred             cCCceeEEEeccchhhh--------cCCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQHLQMC--------FETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~--------~~~~~~~~-----------~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+..|+++.+.++...        -.+.++..           .+++.+...++.+|.++.+
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i  167 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL  167 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            23679999887654210        12333333           3445566677778888876

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=82.69  E-value=4.1  Score=33.77  Aligned_cols=100  Identities=8%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467           34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (312)
Q Consensus        34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~  112 (312)
                      +|+=+|+|. |..+...+......|+++|.+++.++...+..   +    ..++.+|..+.......  .-...|+|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~---~----~~~i~gd~~~~~~l~~a--~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL---K----ATIIHGDGSHKEILRDA--EVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS---S----SEEEESCTTSHHHHHHH--TCCTTCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc---C----CeEEEcCCCCHHHHHhc--CcccCCEEEEe
Confidence            567778764 32333333334458999999998877654332   2    56789998875432211  23578988765


Q ss_pred             cchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       113 ~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..      +. .....+..+.+.+.|...++....+.
T Consensus        73 ~~------~d-~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           73 TP------RD-EVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             CS------CH-HHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             cC------Cc-HHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            42      12 23444555566666777766655444

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=82.52  E-value=16  Score=30.93  Aligned_cols=82  Identities=10%  Similarity=-0.048  Sum_probs=53.8

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .+.+||=.|++.|-   .+..++. ...+|+.+|.+.+.++...+.+...+  .++.++.+|+.+..-..    .+....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGS-LGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            46789988876651   2233333 34589999999998888777765543  35888999998754211    111123


Q ss_pred             CceeEEEeccch
Q 021467          104 NQADLVCCFQHL  115 (312)
Q Consensus       104 ~~fD~V~~~~~l  115 (312)
                      +..|+++...+.
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            579998887654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=82.48  E-value=16  Score=32.20  Aligned_cols=84  Identities=13%  Similarity=0.013  Sum_probs=55.5

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .+.+||=.|++.|-   .+..++. ...+|++++.+++.++.+.+.+...+...++.++.+|+.+..-..    ......
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLN-QGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35689999987762   2223333 345899999999998888777665433335889999998754211    111224


Q ss_pred             CceeEEEeccch
Q 021467          104 NQADLVCCFQHL  115 (312)
Q Consensus       104 ~~fD~V~~~~~l  115 (312)
                      +..|+++.+.++
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            679999887653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=82.41  E-value=9.3  Score=33.28  Aligned_cols=109  Identities=14%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      ++..+|=-|.+.|-   .+..++..+ .+|+.+|.+++.++.+.+.+..     ++..+.+|+.+..-..    .....-
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~G-a~V~i~~r~~~~l~~~~~~~g~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~  101 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEG-ARVFITGRRKDVLDAAIAEIGG-----GAVGIQADSANLAELDRLYEKVKAEA  101 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHcCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46788888988772   233444434 5999999999998887666532     2678899998754221    122234


Q ss_pred             CceeEEEeccchhhh--c--CCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMC--F--ETEERAR-----------RLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~--~--~~~~~~~-----------~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++.|+++.+......  +  .+.++.+           .+.+.+...|+.+|.++.+
T Consensus       102 G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A          102 GRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             SCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence            789998876653211  0  1233332           3345666778888887766

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=82.39  E-value=7.6  Score=33.63  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             CCCCCCcchHHhHHHHHHHHHHHHhcCCCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC
Q 021467            4 LPIPRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKN   80 (312)
Q Consensus         4 ~~~~R~~~~~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~   80 (312)
                      |+++++++....+.  .++.+    .-++.+||=.|++.|-   .+..++. ...+|+.+|.+.+.++.+.+.+...+  
T Consensus         6 ~~~~~~~~~~~~~~--~~~m~----~~~~k~~lVTGas~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~~~~l~~~~--   76 (283)
T 3v8b_A            6 HHSSGVDLGTENLY--FQSMM----NQPSPVALITGAGSGIGRATALALAA-DGVTVGALGRTRTEVEEVADEIVGAG--   76 (283)
T ss_dssp             ---------------------------CCCEEEEESCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHTTTT--
T ss_pred             CCccccccccchhh--hhhhc----CCCCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhcC--
Confidence            56666666654422  22211    1246789999987662   2233333 34599999999998888777665432  


Q ss_pred             ceEEEEEcCCCCCchhh----hhhhcCCceeEEEeccch
Q 021467           81 FIAEFFEADPCAENFET----QMQEKANQADLVCCFQHL  115 (312)
Q Consensus        81 ~~~~f~~~D~~~~~~~~----~~~~~~~~fD~V~~~~~l  115 (312)
                      .++.++.+|+.+..-..    ......+..|+++.+.+.
T Consensus        77 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           77 GQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            34888999998753211    111123679998887654

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=82.16  E-value=2.3  Score=38.15  Aligned_cols=93  Identities=22%  Similarity=0.031  Sum_probs=58.3

Q ss_pred             CCCCEEEEECC-C-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCc
Q 021467           30 HPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGC-G-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~  105 (312)
                      .++.+||-+|+ | -|..+..+++....+|+++ .+++-++.+++.    +    +..+  | ...++...+..  ....
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l----G----a~~i--~-~~~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL----G----ATPI--D-ASREPEDYAAEHTAGQG  216 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH----T----SEEE--E-TTSCHHHHHHHHHTTSC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc----C----CCEe--c-cCCCHHHHHHHHhcCCC
Confidence            47899999995 3 3445556666555699999 888877776543    2    2222  2 22333222211  2357


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+..-.-           ..+....++|++||.++..
T Consensus       217 ~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          217 FDLVYDTLGG-----------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEEEESSCT-----------HHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEECCCc-----------HHHHHHHHHHhcCCeEEEE
Confidence            9999865421           2466777899999999865

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=80.82  E-value=9.6  Score=32.33  Aligned_cols=84  Identities=20%  Similarity=0.094  Sum_probs=54.1

Q ss_pred             CCCEEEEECC-CCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYC-GAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGC-G~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .+.+||=.|+ |.|  ..+.+.+.....+|+.+|.+.+.++.+.+.+.... ..++.++.+|+.+..-..    ......
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4578898887 565  22333333344589999999998888777765432 235889999998753211    111123


Q ss_pred             CceeEEEeccch
Q 021467          104 NQADLVCCFQHL  115 (312)
Q Consensus       104 ~~fD~V~~~~~l  115 (312)
                      ++.|+++...++
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            578999887653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=80.46  E-value=1.9  Score=39.13  Aligned_cols=96  Identities=21%  Similarity=0.140  Sum_probs=57.5

Q ss_pred             cC-CCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SH-PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~-~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .. ++.+||=+|+|. |..+..+++....+|+++|.+++.++.+++.+..      ...+  |..+..   .+....+.+
T Consensus       184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa------~~v~--~~~~~~---~~~~~~~~~  252 (366)
T 1yqd_A          184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGA------DSFL--VSRDQE---QMQAAAGTL  252 (366)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCC------SEEE--ETTCHH---HHHHTTTCE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC------ceEE--eccCHH---HHHHhhCCC
Confidence            44 789999999753 3344555555455899999999887776644321      1111  222211   111122479


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+..-....          .++...++|++||+++..
T Consensus       253 D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          253 DGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             CEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            99986553211          234556788999998865

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=80.06  E-value=6.8  Score=33.48  Aligned_cols=84  Identities=17%  Similarity=-0.017  Sum_probs=54.2

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .+.++|=.|++.|-   .+..++. ...+|+.+|.+++.++.+.+..........+.++.+|+.+......+-..-+..|
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~-~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVA-EGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            45678888876651   2233333 4458999999999888777766554333457888999987543222222346799


Q ss_pred             EEEeccch
Q 021467          108 LVCCFQHL  115 (312)
Q Consensus       108 ~V~~~~~l  115 (312)
                      +++.+.+.
T Consensus        88 ~lv~nAg~   95 (267)
T 3t4x_A           88 ILINNLGI   95 (267)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            98876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	5e-41
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-09
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	4e-07
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	4e-07
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	1e-05
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	1e-05
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	6e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.001
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.002
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  141 bits (355), Expect = 5e-41
 Identities = 60/269 (22%), Positives = 106/269 (39%), Gaps = 29/269 (10%)

Query: 19  FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR 78
           F K  LI++Y+    +V DL CG G D+ K+E A I  Y G+D+A   I +AR    N +
Sbjct: 12  FIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK 71

Query: 79  KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138
           + F   F   D    + +   +        +         F T E      +N++  L+P
Sbjct: 72  RRFKVFFRAQDSYGRHMDLGKEFDV-----ISSQFSFHYAFSTSESLDIAQRNIARHLRP 126

Query: 139 GGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLF 198
           GGYF+   P    I  +Y++   +                   + Y I  E  E+     
Sbjct: 127 GGYFIMTVPSRDVILERYKQGRMSN------------------DFYKIELEKMEDVPMES 168

Query: 199 GKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSA 258
            ++Y+    + ++   +  V F  ++   +  GL  VE +   +FY+D       +    
Sbjct: 169 VREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKKM 228

Query: 259 GPNLIDPRGRLLPRSYDVLGLYSTFIFQK 287
           G   +           +V+G+Y   +F+K
Sbjct: 229 GLGCLT------REESEVVGIYEVVVFRK 251

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 43/259 (16%), Positives = 79/259 (30%), Gaps = 30/259 (11%)

Query: 12  THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR 71
           T  R  E+    L  +  H    V D+ CG GVD          +   +D +   +  A 
Sbjct: 37  TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML-VEEGFSVTSVDASDKMLKYAL 95

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC----FQHLQMCFETEERARR 127
               N+RK    + +  +        +     +  D V C    F HL      +   R 
Sbjct: 96  KERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAK---------YQKNVEAYHNRSSSMKPNLVPNC 178
            L+N++S+++PGG  +    +   I +          Y K+       +S +  N   + 
Sbjct: 156 ALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHM 215

Query: 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI- 237
           +  + Y +              K++L         +       S   L +EA     +  
Sbjct: 216 VTLD-YTVQVPGAGRDGAPGFSKFRL---------SYYPHCLASFTELVQEAFGGRCQHS 265

Query: 238 -----QNLNEFYDDNRALF 251
                +            F
Sbjct: 266 VLGDFKPYRPGQAYVPCYF 284

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 31/181 (17%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
             +L   A+            T+ D+  G  V       +   +    D       E   
Sbjct: 38  PWKLRCLAQ--TFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGR 95

Query: 73  TWENQRKNF-----------------------------IAEFFEADPCAENFETQMQEKA 103
             + +   F                             +      D              
Sbjct: 96  WLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAP 155

Query: 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAY 163
             AD +     L+         +R L ++++LL+PGG+ L I     + +   +  +   
Sbjct: 156 LPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVV 215

Query: 164 H 164
            
Sbjct: 216 P 216

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 40/231 (17%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
            R         +F +    +        V DL CG G+   +            +     
Sbjct: 17  RRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL----------AERGYEV 66

Query: 67  IGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERAR 126
           +G        +     A+           +       N+ D V  F    + +  EE  R
Sbjct: 67  VGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST-IMYFDEEDLR 125

Query: 127 RLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVI 186
           +L   V+  LKPGG F+   P     W    ++     N     +  ++ +    E  V 
Sbjct: 126 KLFSKVAEALKPGGVFITDFPC----WFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQ 181

Query: 187 TFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
               +     L        F  D         + P  +RL  E   E V+I
Sbjct: 182 KLRFKRLVQILRPNGEVKAFLVDDELNI----YTPREVRLLAEKYFEKVKI 228

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 29/185 (15%)

Query: 7   PRSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG 66
           P +E+    L    K            T+ D+  G  +           +    D     
Sbjct: 29  PEAEMLKFNLECLHK--TFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRN 86

Query: 67  IGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKA---------------------- 103
             E     + +   +         C  E    + +EK                       
Sbjct: 87  REELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA 146

Query: 104 ----NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159
                 AD V     ++    + +  R  L N++SLLKPGG+ +         +   ++ 
Sbjct: 147 PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKRE 206

Query: 160 VEAYH 164
                
Sbjct: 207 FSCVA 211

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 28/198 (14%), Positives = 57/198 (28%), Gaps = 19/198 (9%)

Query: 13  HHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGV-------DVDKWETALIANYIGI 60
           H  + EF    L  I          + +  +  GAG         V      +  N   +
Sbjct: 17  HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVV 76

Query: 61  DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMC 118
           + +   I + ++           +F      +  ++++M E  +  + D +   Q L   
Sbjct: 77  EPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV 136

Query: 119 FETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178
            +        L+   SLL      L I    S+ W K  K           +   +  + 
Sbjct: 137 KDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY-GSRFPQDDLCQYITSDD 191

Query: 179 IRSESYVITFEVEEEKFP 196
           +      +  + E     
Sbjct: 192 LTQMLDNLGLKYECYDLL 209

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 34  TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE 93
            + D  CG G     +   ++   +      +GI          R+ F    ++++    
Sbjct: 30  HIVDYGCGYG-----YLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL-- 82

Query: 94  NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153
             +    E  ++ D+  C                +LQ +   +K GG  +   P   +  
Sbjct: 83  EGDATEIELNDKYDIAICH----AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNM 138

Query: 154 AKYQKNVEAYHNRSS 168
           A Y  + E       
Sbjct: 139 ASYLLDGEKQSEFIQ 153

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 22/230 (9%)

Query: 8   RSELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGI 67
           R+++ + +  +F         +  +    DL CG G       T  +        A    
Sbjct: 15  RADVDYKKWSDFII-EKCVENNLVFDDYLDLACGTG-----NLTENLCPKFKNTWAVDLS 68

Query: 68  GEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARR 127
            E     EN+ ++   +   A     N     +          C           +  ++
Sbjct: 69  QEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLI-----TCCLDSTNYIIDSDDLKK 123

Query: 128 LLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVIT 187
             + VS+ LK GG F+        +      N   Y +                  Y+  
Sbjct: 124 YFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISF 183

Query: 188 FEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEI 237
           F  + E +  F ++++ +                 + +  +   L  ++ 
Sbjct: 184 FVRDGEFYKRFDEEHEERA-----------YKEEDIEKYLKHGQLNILDK 222

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 7/143 (4%)

Query: 23  ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI 82
           AL    S     V ++  G  +   K + A I  +  I+         RD W  ++ + +
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKV 103

Query: 83  AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142
                                   D     +      +       +  +   LLKPGG  
Sbjct: 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNF----IKNHAFRLLKPGGVL 159

Query: 143 L--GITPDSSTIWAKYQKNVEAY 163
               +T     + +KY      +
Sbjct: 160 TYCNLTSWGELMKSKYSDITIMF 182

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 22/165 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72
           HH L    KTA  +        V D+  GAG       +  +   IG+D           
Sbjct: 2   HHSLGLMIKTAECR----AEHRVLDIGAGAG-HTALAFSPYVQECIGVDA---------- 46

Query: 73  TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132
             +   +   +   E       F+    E     D        +         R+ ++ V
Sbjct: 47  -TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 105

Query: 133 SSLLKPGGYFLGIT------PDSSTIWAKYQKNVEAYHNRSSSMK 171
           + +LK  G FL +       P          +  +  H R SS+ 
Sbjct: 106 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLS 150

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 21/184 (11%), Positives = 46/184 (25%), Gaps = 24/184 (13%)

Query: 13  HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEAR 71
           +  L +     L +        V D+ CG G     +  AL      G+D          
Sbjct: 66  YQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLD---------- 115

Query: 72  DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131
                      A+ +           ++       D +                    + 
Sbjct: 116 --VSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----------CKAEE 162

Query: 132 VSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191
           ++ ++KPGG+ +  TP    +           H  +   +        +S        + 
Sbjct: 163 LARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPMRLR 222

Query: 192 EEKF 195
            ++ 
Sbjct: 223 GDEA 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	100.0
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.85
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.84
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.84
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.83
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.82
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.79
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.79
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.78
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.77
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.77
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.74
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.72
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.71
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.7
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.69
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.68
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.66
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.64
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.64
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.61
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.61
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.6
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.56
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.53
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.52
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.5
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.5
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.5
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.49
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.49
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.48
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.45
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.43
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.42
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.42
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.39
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.35
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.35
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.32
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.32
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.28
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.27
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.26
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.26
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.24
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.21
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.2
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.17
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.09
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.07
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.07
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.07
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.99
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.98
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.97
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.94
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.92
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.77
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.77
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.73
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.7
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.68
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.68
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.5
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.5
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.45
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.44
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.41
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.4
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.36
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.36
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.33
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.31
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.3
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.27
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.26
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.23
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.15
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.14
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.12
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.12
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.1
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.84
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.79
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.76
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.53
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.54
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.39
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.38
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.24
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.11
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.05
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.88
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.76
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.71
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.57
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.46
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	95.33
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.26
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.2
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.08
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.77
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.74
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.25
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.24
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.83
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.57
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.47
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.46
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.85
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.64
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.23
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.59
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.46
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.39
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.27
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	89.2
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	88.46
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.04
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.94
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.76
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	87.58
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.4
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.25
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	86.61
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	86.15
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.33
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.24
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.19
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.62
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	84.12
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	83.88

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=100.00  E-value=7.7e-48  Score=341.56  Aligned_cols=247  Identities=26%  Similarity=0.447  Sum_probs=218.5

Q ss_pred             HHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 021467           13 HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA   92 (312)
Q Consensus        13 ~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~   92 (312)
                      ++.+|||||+.||+.+.+++.+|||||||+|+++.+|++.+..+|+|+|+|++||+.|++|+...+...++.|+++|+..
T Consensus         6 ~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~   85 (252)
T d1ri5a_           6 IRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG   85 (252)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             HHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh
Confidence            56789999999999999999999999999999999999888889999999999999999999887767789999999977


Q ss_pred             CchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCC
Q 021467           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKP  172 (312)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~  172 (312)
                      .++.     ..++||+|+|++++||++.+.+++..+++++.++|||||+|++++||.+.+..++.+.             
T Consensus        86 ~~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~-------------  147 (252)
T d1ri5a_          86 RHMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG-------------  147 (252)
T ss_dssp             SCCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT-------------
T ss_pred             hccc-----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc-------------
Confidence            6542     3578999999999999999999999999999999999999999999999998877531             


Q ss_pred             CCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHH
Q 021467          173 NLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFA  252 (312)
Q Consensus       173 ~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~  252 (312)
                       .++    ++.|.++++.........+..|.+++.+.+.+++||+++++.|+++|+++||++++..+|.+||++......
T Consensus       148 -~~~----~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f~~~~~~~~~~~~  222 (252)
T d1ri5a_         148 -RMS----NDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEGRRNP  222 (252)
T ss_dssp             -CCB----CSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHHHTCH
T ss_pred             -ccC----CceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEecHHHHHHHHhhhCH
Confidence             223    357888887665555567889999999998889999999999999999999999999999999998776666


Q ss_pred             HHHHhcCCCCCCCCCCCChhHHHHhhhheeeEEeec
Q 021467          253 GMLMSAGPNLIDPRGRLLPRSYDVLGLYSTFIFQKP  288 (312)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~~e~e~~~ly~~f~F~K~  288 (312)
                      .+.++++      .+.|+++|||++++|++|+|+|+
T Consensus       223 ~~~~~~~------~~~l~~~e~e~~~ly~~fiF~K~  252 (252)
T d1ri5a_         223 ELSKKMG------LGCLTREESEVVGIYEVVVFRKL  252 (252)
T ss_dssp             HHHHSSS------CCCCCHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHhcC------CCcCCHHHHHHHHhhhEEEEEEC
Confidence            6666553      36789999999999999999996

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.85  E-value=4.8e-20  Score=164.14  Aligned_cols=110  Identities=12%  Similarity=0.016  Sum_probs=95.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++++.+|||||||+|+.+..++.....+|+|+|+|+.|++.|+++....+...+++|+++|+.+.++      ++++||+
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~------~~~sfD~  138 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC------EDNSYDF  138 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS------CTTCEEE
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccc------cccccch
Confidence            4688999999999999888887664569999999999999999999877665669999999988777      6789999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|..++||+    ++...+++++.++|||||+|+++.+.
T Consensus       139 V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~~  174 (282)
T d2o57a1         139 IWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDPM  174 (282)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             hhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence            9999999883    23667899999999999999988543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.84  E-value=2.3e-20  Score=160.79  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=90.7

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      -++++.+|||||||+|..+..+++.+ .+|+|+|+|++|++.|+++....+. .+++|.++|+.+.++      ++++||
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~------~~~~fD   83 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPF------TDERFH   83 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCS------CTTCEE
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhccccccc-ccccccccccccccc------cccccc
Confidence            35688999999999998887776654 5999999999999999999876542 348999999988776      678999


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +|+|..++||.    .+...+++++.++|||||++++..+
T Consensus        84 ~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~  119 (231)
T d1vl5a_          84 IVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVDN  119 (231)
T ss_dssp             EEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccc----CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99999999983    3467889999999999999998743

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.84  E-value=2.4e-20  Score=159.59  Aligned_cols=119  Identities=23%  Similarity=0.282  Sum_probs=101.8

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      .++.++++++.+|||||||+|..+..+++.+ .+|+|+|+|++|++.|+++....+  ..+.++++|+.+.++      +
T Consensus        29 ~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~------~   99 (226)
T d1ve3a1          29 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSF------E   99 (226)
T ss_dssp             HHHHHSCCSCCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCS------C
T ss_pred             HHHHHhcCCCCEEEEECCCcchhhhhHhhhh-cccccccccccchhhhhhhhcccc--ccccccccccccccc------c
Confidence            3677788899999999999998888777654 589999999999999999987654  236788999988776      6


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      +++||+|+|..++||  .+..++..+|+++.++|||||++++.+++...+
T Consensus       100 ~~~fD~I~~~~~l~~--~~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~  147 (226)
T d1ve3a1         100 DKTFDYVIFIDSIVH--FEPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  147 (226)
T ss_dssp             TTCEEEEEEESCGGG--CCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             CcCceEEEEecchhh--CChhHHHHHHHHHHHHcCcCcEEEEEEcCchhh
Confidence            789999999999998  456678899999999999999999998886544

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.84  E-value=4.6e-20  Score=160.84  Aligned_cols=115  Identities=19%  Similarity=0.275  Sum_probs=96.2

Q ss_pred             HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ....++.+|||+|||+|..+..+++.+. +++|+|+|+.||+.|+++.+..+  .+++++++|+.+.++       +++|
T Consensus        33 ~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~--~~v~~~~~d~~~~~~-------~~~f  102 (246)
T d1y8ca_          33 ENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQG--LKPRLACQDISNLNI-------NRKF  102 (246)
T ss_dssp             TTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTT--CCCEEECCCGGGCCC-------SCCE
T ss_pred             HhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccC--ccceeeccchhhhcc-------cccc
Confidence            3444668999999999999988877665 89999999999999999987654  348999999977554       4789


Q ss_pred             eEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467          107 DLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus       107 D~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                      |+|+|.+ +++| +.+.+++..+|++++++|||||.|++.+++...+
T Consensus       103 D~i~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~  148 (246)
T d1y8ca_         103 DLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL  148 (246)
T ss_dssp             EEEEECTTGGGG-CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             cccceeeeeeec-cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHH
Confidence            9999875 5665 6779999999999999999999999988776544

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=7.6e-20  Score=158.34  Aligned_cols=105  Identities=19%  Similarity=0.264  Sum_probs=91.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++|+.+|||||||+|..+..+++.. .+|+|+|+|+.|++.|+++....+. .++.++++|+.+.++      ++++||+
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~------~~~~fD~   85 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPF------PDDSFDI   85 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCS------CTTCEEE
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccc------cccccce
Confidence            5699999999999998888776654 5999999999999999999876543 248999999988777      6799999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|..++|++    .+...+++++.++|||||+++++
T Consensus        86 v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~  118 (234)
T d1xxla_          86 ITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLV  118 (234)
T ss_dssp             EEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEE
Confidence            9999999983    33778999999999999999986

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=8.3e-20  Score=157.25  Aligned_cols=125  Identities=19%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             hHHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc
Q 021467           12 THHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA   88 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~   88 (312)
                      |.++.....-..+++.+.+++.+|||||||+|..+..+++.   +..+|+|+|+|+.||+.|+++.+..+....+.+..+
T Consensus        20 P~Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~   99 (225)
T d1im8a_          20 PGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN   99 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc
Confidence            44444445555677788899999999999999877777653   566999999999999999999887766667888888


Q ss_pred             CCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        89 D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |....+        ...+|+|+|.+++|+  .+.++...+|+++.++|||||.|++..
T Consensus       100 d~~~~~--------~~~~d~i~~~~~l~~--~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         100 DIRHVE--------IKNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             CTTTCC--------CCSEEEEEEESCGGG--SCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccc--------cccceeeEEeeeccc--cChhhHHHHHHHHHHhCCCCceeeccc
Confidence            876543        478999999999998  567788899999999999999999873

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=4e-19  Score=158.13  Aligned_cols=184  Identities=14%  Similarity=0.127  Sum_probs=131.4

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ++++. ++++.+|||||||+|+.+..+++....+|+|+|+|+++++.|+++.+..+....+.+...|...         .
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~---------~  114 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED---------F  114 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG---------C
T ss_pred             HHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh---------h
Confidence            44443 5689999999999999888777665569999999999999999999887766667887777543         3


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC---hhHHHHHHHHhHHhhhcCCCCCCCCCCCCcc
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD---SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCI  179 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~---~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~  179 (312)
                      +++||.|++..++++  ........++++++++|||||.+++.+.-   ......+........                
T Consensus       115 ~~~fD~i~si~~~eh--~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~----------------  176 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEH--FGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFET----------------  176 (280)
T ss_dssp             CCCCSEEEEESCGGG--TCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHH----------------
T ss_pred             ccchhhhhHhhHHHH--hhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhccccccccc----------------
Confidence            578999999998887  34556789999999999999999986322   111111000000000                


Q ss_pred             cCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467          180 RSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (312)
Q Consensus       180 ~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~  255 (312)
                                   .....|-.+|.|        ...++.+.+.+.++++++||+++...++...|......|.+.+
T Consensus       177 -------------~~~~dfI~kyif--------Pgg~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~~W~~~f  231 (280)
T d2fk8a1         177 -------------ARFIKFIVTEIF--------PGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTL  231 (280)
T ss_dssp             -------------HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHHHHHH
T ss_pred             -------------ccccchhhhhcc--------CCCcccchHhhhhhHHhhccccceeeecccCHHHHHHHHHHHH
Confidence                         000013334433        1235778899999999999999999999988888666655443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-19  Score=154.98  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=92.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++.....+|+|+|+|+.||+.|++++...+. ..++|+++|+.+.++      ++++||+|+
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~------~~~~fD~I~  132 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTP------EPDSYDVIW  132 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCC------CSSCEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccc------ccccccccc
Confidence            5679999999999888777666677999999999999999999876542 347899999988665      568999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +.+++||  .+.++...++++++++|||||.++++.+
T Consensus       133 ~~~~l~h--~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         133 IQWVIGH--LTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccc--chhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            9999998  4566778899999999999999998743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-19  Score=157.36  Aligned_cols=141  Identities=17%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             CCCCcchHHhHHHHHHHHHHHHhcC---CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce
Q 021467            6 IPRSELTHHRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI   82 (312)
Q Consensus         6 ~~R~~~~~~~~~n~vk~~li~~~~~---~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~   82 (312)
                      ......+.....+|+...+.+.+..   ++.+|||||||+|.....++..+..+|+|+|+|+.||+.|+++++.....+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~  102 (257)
T d2a14a1          23 FDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYD  102 (257)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCC
T ss_pred             cCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccch
Confidence            3344555666778888888776653   5679999999999877766666666899999999999999999875432110


Q ss_pred             -----------------------------EEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHH
Q 021467           83 -----------------------------AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS  133 (312)
Q Consensus        83 -----------------------------~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~  133 (312)
                                                   ......++.......  +...++||+|++.+++|++..+.++...++++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~  180 (257)
T d2a14a1         103 WTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLA--PAVLPLADCVLTLLAMECACCSLDAYRAALCNLA  180 (257)
T ss_dssp             CHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccc--cccCCcccEEeehhhHHHhcccHHHHHHHHHHHH
Confidence                                         112222222222111  1146899999999999998888899999999999


Q ss_pred             hccCCCcEEEEEecC
Q 021467          134 SLLKPGGYFLGITPD  148 (312)
Q Consensus       134 ~~LkpGG~~i~~~p~  148 (312)
                      ++|||||+++++.+.
T Consensus       181 ~~LkpGG~li~~~~~  195 (257)
T d2a14a1         181 SLLKPGGHLVTTVTL  195 (257)
T ss_dssp             TTEEEEEEEEEEEES
T ss_pred             hccCCCcEEEEEEec
Confidence            999999999988653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=2e-19  Score=156.67  Aligned_cols=109  Identities=28%  Similarity=0.384  Sum_probs=92.1

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..+..+|||||||+|..+..+++.+. +|+|+|+|+.||+.|+++.+..+.  ++.++++|+.+.++       +++||+
T Consensus        39 ~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD~  108 (251)
T d1wzna1          39 KREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFDA  108 (251)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEEE
T ss_pred             CCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccch
Confidence            34667999999999998888877665 899999999999999999876542  58999999987665       368999


Q ss_pred             EEeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |+|.+. +++  .+.++...+|+++.++|||||++++.+++.
T Consensus       109 I~~~~~~~~~--~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         109 VTMFFSTIMY--FDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             EEECSSGGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             Hhhhhhhhhc--CChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            999764 554  467888999999999999999999998875

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.80  E-value=2.5e-19  Score=154.30  Aligned_cols=110  Identities=11%  Similarity=0.173  Sum_probs=90.7

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..++..+ .+|+|+|+|+++++.|+++...     .+.++++|+.+..+       +++||+|+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~~-----~~~~~~~~~~~~~~-------~~~fD~I~   86 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL-------PRRYDNIV   86 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC-------SSCEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhccccc-----cccccccccccccc-------cccccccc
Confidence            45689999999998887775544 5899999999999999988643     28899998766443       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHH-hccCCCcEEEEEecChhHHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVS-SLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~-~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      |..++||+    ++...+|+++. ++|||||.+++++||...+..++.
T Consensus        87 ~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~  130 (225)
T d2p7ia1          87 LTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIA  130 (225)
T ss_dssp             EESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHH
T ss_pred             ccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHH
Confidence            99999983    34677899998 789999999999999987776654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=2.4e-19  Score=155.16  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=93.4

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ..++..+.+++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.|+++...       .++++|+.+.++      
T Consensus        33 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~~-------~~~~~~~~~l~~------   98 (246)
T d2avna1          33 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK-------NVVEAKAEDLPF------   98 (246)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS-------CEEECCTTSCCS------
T ss_pred             HHHHHHhcCCCCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccccc-------cccccccccccc------
Confidence            4456677778899999999999888877655 45999999999999999987432       367889888766      


Q ss_pred             cCCceeEEEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467          102 KANQADLVCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus       102 ~~~~fD~V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      ++++||+|+|.+ ++|| +.   +...+|+++.++|||||++++++|+...+...
T Consensus        99 ~~~~fD~ii~~~~~~~~-~~---d~~~~l~~i~r~Lk~gG~~ii~~~~~~~~~~~  149 (246)
T d2avna1          99 PSGAFEAVLALGDVLSY-VE---NKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQ  149 (246)
T ss_dssp             CTTCEEEEEECSSHHHH-CS---CHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHH
T ss_pred             ccccccceeeecchhhh-hh---hHHHHHHHHHhhcCcCcEEEEEECCHHHHHHH
Confidence            678999999865 6777 33   35668999999999999999999988665443

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=7.3e-18  Score=150.47  Aligned_cols=181  Identities=15%  Similarity=0.118  Sum_probs=130.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ++++.+|||||||.|+.+..++.....+|+|+++|++.++.|+++....+....+.+...|..   .      .+++||.
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~------~~~~fD~  129 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---E------FDEPVDR  129 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---G------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---c------cccccce
Confidence            568999999999999988877766556999999999999999999988777667888887752   2      4689999


Q ss_pred             EEeccchhhhcCC-----HHHHHHHHHHHHhccCCCcEEEEEec---ChhHHHHHHHHhHHhhhcCCCCCCCCCCCCccc
Q 021467          109 VCCFQHLQMCFET-----EERARRLLQNVSSLLKPGGYFLGITP---DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIR  180 (312)
Q Consensus       109 V~~~~~lh~~~~~-----~~~~~~~l~~i~~~LkpGG~~i~~~p---~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~  180 (312)
                      |++..++.|+-..     .+..+.+++++.++|||||.+++.+.   +.......           +. ..    +..  
T Consensus       130 i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~-----------~~-~~----p~~--  191 (291)
T d1kpia_         130 IVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQEL-----------GL-TS----PMS--  191 (291)
T ss_dssp             EEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHH-----------TC-CC----CHH--
T ss_pred             EeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhc-----------cC-CC----chh--
Confidence            9999987664321     25578999999999999999997633   32111100           00 00    000  


Q ss_pred             CceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467          181 SESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (312)
Q Consensus       181 ~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~  255 (312)
                         +        .....|-.+|.|        ...++.+...+..++++.||+++...++...|......|.+.+
T Consensus       192 ---~--------~~~~~fi~kyiF--------pgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~f  247 (291)
T d1kpia_         192 ---L--------LRFIKFILTEIF--------PGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADAL  247 (291)
T ss_dssp             ---H--------HHHHHHHHHHTC--------TTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHH
T ss_pred             ---h--------cccchHHHHHhc--------CCCCCCCHHHHHhhhcccccccceeeeccccHHHHHHHHHHHH
Confidence               0        000013334444        1235678899999999999999999999999988766665443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=8.4e-19  Score=148.71  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=86.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|..+..+     .+++|+|+|+.|++.|+++    +    +.++++|+.+.++      ++++||+|+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~----~----~~~~~~d~~~l~~------~~~~fD~I~   96 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR----G----VFVLKGTAENLPL------KDESFDFAL   96 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT----T----CEEEECBTTBCCS------CTTCEEEEE
T ss_pred             CCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc----c----ccccccccccccc------ccccccccc
Confidence            5678999999999776655     2578999999999999875    2    7899999988776      678999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY  156 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~  156 (312)
                      |..++||+    .+...+++++.++|+|||.+++..|+.+.++.+.
T Consensus        97 ~~~~l~h~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~  138 (208)
T d1vlma_          97 MVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESFLGRE  138 (208)
T ss_dssp             EESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHH
T ss_pred             cccccccc----cccccchhhhhhcCCCCceEEEEecCCcchhHHh
Confidence            99999983    2467899999999999999999999887655443

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=1.3e-17  Score=148.41  Aligned_cols=179  Identities=18%  Similarity=0.210  Sum_probs=130.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.++.+|||||||.|+.+..+++....+|+|+++|++.++.|+++....+...++.+..+|...         .+++||.
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~---------~~~~fD~  130 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ---------FDEPVDR  130 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG---------CCCCCSE
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc---------ccccccc
Confidence            5699999999999999888887776679999999999999999999887777779999998644         3478999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC---hhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD---SSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV  185 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~---~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~  185 (312)
                      |++..++.++  .......+++++.++|||||.+++.+..   ......           ++.       +..   ..+ 
T Consensus       131 i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~-----------~~~-------~~~---~~~-  186 (285)
T d1kpga_         131 IVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE-----------RGL-------PMS---FTF-  186 (285)
T ss_dssp             EEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT-----------TTC-------SCH---HHH-
T ss_pred             eeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhcc-----------ccC-------Ccc---hhh-
Confidence            9999987763  2244678999999999999999976332   111110           000       000   000 


Q ss_pred             EEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467          186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML  255 (312)
Q Consensus       186 i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~  255 (312)
                             .....|-.+|.|        ....+.+.+.+.+++++.||+++...++...|.+....|...+
T Consensus       187 -------~~~~~fi~kyiF--------pgg~lPsl~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f  241 (285)
T d1kpga_         187 -------ARFLKFIVTEIF--------PGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAAL  241 (285)
T ss_dssp             -------HHHHHHHHHHTS--------TTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             -------hchhhHHHHHhc--------cCCCCCChhhHHHHHHHhchhhcccccchhhHHHHHHHHHHHH
Confidence                   000123344444        1224668889999999999999999999999988766665444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.77  E-value=6.4e-19  Score=147.26  Aligned_cols=124  Identities=13%  Similarity=0.053  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-----------CceEE
Q 021467           16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-----------NFIAE   84 (312)
Q Consensus        16 ~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~-----------~~~~~   84 (312)
                      ++.+++..+-..-.+|+.+|||+|||+|.++..++..+. +|+|+|+|+.||+.|+++.+....           .....
T Consensus         5 ~~~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T d1pjza_           5 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE   83 (201)
T ss_dssp             STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence            344555555555567899999999999999998887765 999999999999999999865321           12247


Q ss_pred             EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467           85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus        85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+++|+...+..     ....||+|++..++|+  ...+....+++++.++|||||.+++...
T Consensus        84 ~~~~d~~~l~~~-----~~~~~D~i~~~~~l~~--l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          84 IWCGDFFALTAR-----DIGHCAAFYDRAAMIA--LPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             EEEECCSSSTHH-----HHHSEEEEEEESCGGG--SCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             eecccccccccc-----cccceeEEEEEeeeEe--cchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            888888775542     2468999999999998  6678889999999999999999987643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.77  E-value=1.6e-18  Score=152.06  Aligned_cols=106  Identities=17%  Similarity=0.146  Sum_probs=91.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +..+|||+|||+|+.+..++.....+|+|+|+|+.|++.|+++....+   .++|+++|+.+.++      ++++||+|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~d~~~~~~------~~~~fD~I~  163 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP---VGKFILASMETATL------PPNTYDLIV  163 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS---EEEEEESCGGGCCC------CSSCEEEEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc---cceeEEcccccccc------CCCccceEE
Confidence            567999999999988887776666689999999999999999876543   37899999877665      568999999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      |+.++||  .+.++...+|++++++|||||++++..+
T Consensus       164 ~~~vl~h--l~d~d~~~~l~~~~~~LkpgG~iii~e~  198 (254)
T d1xtpa_         164 IQWTAIY--LTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeccccc--cchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence            9999999  5667788999999999999999998643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=5.2e-19  Score=154.10  Aligned_cols=109  Identities=20%  Similarity=0.219  Sum_probs=93.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      +.|+.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+...+++|+++|+.+..       .+++||+
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~-------~~~~fD~  103 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-------ANEKCDV  103 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-------CSSCEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc-------ccCceeE
Confidence            468999999999999888887766556999999999999999999888776667999999998752       4689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |+|..++|++-    +...++++++++|||||++++..+.
T Consensus       104 v~~~~~~~~~~----d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         104 AACVGATWIAG----GFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             EEEESCGGGTS----SSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             EEEEehhhccC----CHHHHHHHHHHHcCcCcEEEEEecc
Confidence            99999998832    4678999999999999999998654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-17  Score=146.99  Aligned_cols=132  Identities=16%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhcC---CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-----------
Q 021467           16 LYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-----------   81 (312)
Q Consensus        16 ~~n~vk~~li~~~~~---~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~-----------   81 (312)
                      +.+|....+-+.+..   .+.+|||+|||+|......+.....+|+|+|+|+.|++.|+++++.....+           
T Consensus        36 ~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~  115 (263)
T d2g72a1          36 VGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  115 (263)
T ss_dssp             HHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhh
Confidence            456666666555533   578999999999966555555566799999999999999998765432111           


Q ss_pred             ------------------eEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467           82 ------------------IAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus        82 ------------------~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                                        ......+|+.............++||+|++.+++|++..+.++...++++++++|||||+|+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li  195 (263)
T d2g72a1         116 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLL  195 (263)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             hccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEE
Confidence                              12345667765443222222356899999999999988888899999999999999999999


Q ss_pred             EEec
Q 021467          144 GITP  147 (312)
Q Consensus       144 ~~~p  147 (312)
                      +..+
T Consensus       196 ~~~~  199 (263)
T d2g72a1         196 LIGA  199 (263)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            8754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=5.1e-18  Score=150.00  Aligned_cols=109  Identities=20%  Similarity=0.324  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      .+......++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++...      +.|.++|+.+.++      
T Consensus        76 ~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~------~~~~~~d~~~l~~------  143 (268)
T d1p91a_          76 QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ------VTFCVASSHRLPF------  143 (268)
T ss_dssp             HHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT------SEEEECCTTSCSB------
T ss_pred             HHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccccc------ccceeeehhhccC------
Confidence            344444557789999999999888888776 346899999999999999887532      7899999998887      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      ++++||+|++.+++|+           ++++.|+|||||++++++|+.+.+++
T Consensus       144 ~~~sfD~v~~~~~~~~-----------~~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         144 SDTSMDAIIRIYAPCK-----------AEELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             CTTCEEEEEEESCCCC-----------HHHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             CCCCEEEEeecCCHHH-----------HHHHHHHhCCCcEEEEEeeCCcchHH
Confidence            6799999999998776           56789999999999999999877655

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.72  E-value=1.9e-17  Score=139.54  Aligned_cols=107  Identities=16%  Similarity=0.140  Sum_probs=89.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|+++....+.. .+++...|+....+       +++||+|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g-~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~fD~I~  100 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANG-YDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGEYDFIL  100 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCCEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHHh-hhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------cccccEEE
Confidence            34599999999999888887765 49999999999999999988765432 37888999877654       57899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      |..++|+  .+.+....+++++.++|+|||++++.+..
T Consensus       101 ~~~~~~~--~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1         101 STVVMMF--LEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             EESCGGG--SCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             Eeeeeec--CCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9999998  45677889999999999999999987443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=7.9e-17  Score=143.78  Aligned_cols=120  Identities=21%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc---eEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF---IAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~---~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++.+|||+|||+|..+..+++.+. +|+|+|+|++||+.|+++....+...   ...+..+|...  +...++ ...+||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT--LDKDVP-AGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG--HHHHSC-CTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc--cccccC-CCCCce
Confidence            467999999999998888887764 89999999999999999876644221   12334444322  111111 357899


Q ss_pred             EEEecc-chhhhcC---CHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          108 LVCCFQ-HLQMCFE---TEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       108 ~V~~~~-~lh~~~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      +|+|.+ +++|+..   +.++...+|++++++|||||+|++.+.+.+.+..
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~  182 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILS  182 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhh
Confidence            999865 5776432   3567899999999999999999999999876643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=3.4e-17  Score=145.54  Aligned_cols=117  Identities=22%  Similarity=0.310  Sum_probs=93.9

Q ss_pred             HHHHHHHHh--cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           20 AKTALIKIY--SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        20 vk~~li~~~--~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      ..+.+++..  ..++.+|||+|||+|..+..++..  ...+|+|+|+|+.+++.|+++....+  .+++|.++|+.+.++
T Consensus        14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~--~~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCC
T ss_pred             HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccc--ccccccccccccccc
Confidence            344455543  236689999999999777766553  24589999999999999999987754  358999999987654


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                             +++||+|+|..++||+ .   +...+++++.++|||||.+++..|+.
T Consensus        92 -------~~~fD~v~~~~~l~~~-~---d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          92 -------NDKYDIAICHAFLLHM-T---TPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             -------SSCEEEEEEESCGGGC-S---SHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             -------cCCceEEEEehhhhcC-C---CHHHHHHHHHHHcCcCcEEEEEECCc
Confidence                   3679999999999983 2   35678999999999999999998875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=140.43  Aligned_cols=143  Identities=17%  Similarity=0.165  Sum_probs=96.6

Q ss_pred             hHHhHHHHHHHHHHHHhc-----CCCCEEEEECCCCCccHHHHHHc-------CCCeEEEEeCChHHHHHHHHHHHhcCC
Q 021467           12 THHRLYEFAKTALIKIYS-----HPYVTVCDLYCGAGVDVDKWETA-------LIANYIGIDVATSGIGEARDTWENQRK   79 (312)
Q Consensus        12 ~~~~~~n~vk~~li~~~~-----~~~~~VLDlGCG~G~~l~~~~~~-------~~~~v~giDis~~~i~~a~~r~~~~~~   79 (312)
                      ....+.+|+...+...+.     ++..+|||||||+|..+..++..       ....++|+|+|+.|++.|+++......
T Consensus        16 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~   95 (280)
T d1jqea_          16 EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN   95 (280)
T ss_dssp             HHHHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc
Confidence            344566787776655432     24458999999999765555432       123689999999999999999865432


Q ss_pred             CceEEEEEcCCCCCchhhh--hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467           80 NFIAEFFEADPCAENFETQ--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus        80 ~~~~~f~~~D~~~~~~~~~--~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      ...+.+...+.....+...  ...++++||+|+|.+++||+    .+...+++++.++|+|||.+++++++....+.++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~  171 (280)
T d1jqea_          96 LENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLW  171 (280)
T ss_dssp             CTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHH
T ss_pred             cccccccchhhhhhhhcchhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHH
Confidence            2223332222221111110  11146899999999999983    34678999999999999999999888766665554


Q ss_pred             H
Q 021467          158 K  158 (312)
Q Consensus       158 ~  158 (312)
                      +
T Consensus       172 ~  172 (280)
T d1jqea_         172 K  172 (280)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.4e-17  Score=138.66  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=91.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----------------CCceEEEEEcCCCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----------------KNFIAEFFEADPCA   92 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~----------------~~~~~~f~~~D~~~   92 (312)
                      .+++.+|||+|||+|.++..++..+. +|+|+|+|+.+|+.|+++.....                ....++++++|+..
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            34788999999999999988887766 99999999999999999875321                12357889998766


Q ss_pred             CchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        93 ~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ....     ..+.||+|....++|+  .+.+..+.+++++.++|||||++++++..
T Consensus       122 l~~~-----~~~~fd~i~~~~~l~~--~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         122 LPRT-----NIGKFDMIWDRGALVA--INPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGS-----CCCCEEEEEESSSTTT--SCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cccc-----ccCceeEEEEEEEEEe--ccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            4331     4679999999999998  56777889999999999999998887544

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.66  E-value=2.7e-16  Score=131.23  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             HHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           19 FAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        19 ~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      -+...++... ..++.+|||+|||+|..+..++.. ..+|+|+|+++++++.|+++.+..+...+++++++|+.+...  
T Consensus        20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~--   96 (186)
T d1l3ia_          20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC--   96 (186)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT--
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc--
Confidence            3444555544 348999999999999887776554 569999999999999999999888766679999999754332  


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                          ....||+|++....++       ...+++.+.+.|||||++++..+..+..
T Consensus        97 ----~~~~~D~v~~~~~~~~-------~~~~~~~~~~~LkpgG~lvi~~~~~e~~  140 (186)
T d1l3ia_          97 ----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (186)
T ss_dssp             ----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             ----ccCCcCEEEEeCcccc-------chHHHHHHHHHhCcCCEEEEEeeccccH
Confidence                4578999999987776       5778999999999999999887665443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=1.3e-15  Score=127.78  Aligned_cols=119  Identities=16%  Similarity=0.176  Sum_probs=94.4

Q ss_pred             HHHHHHHHhc-CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhh
Q 021467           20 AKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFET   97 (312)
Q Consensus        20 vk~~li~~~~-~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~   97 (312)
                      ....|++... .++.+|||+|||+|..+..++. ...+++|+|+|+.+++.|+++.+.++.. .+++++.+|+.+ .+  
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~--  115 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NV--  115 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TC--
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hh--
Confidence            3445665543 4789999999999987776655 4569999999999999999998876543 358999999876 33  


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                          ++++||+|+|...+|.   ..+..+.+++++.++|||||.+++.....
T Consensus       116 ----~~~~fD~Ii~~~p~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         116 ----KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             ----TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             ----ccCCceEEEEcccEEe---cchhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence                4689999999988775   35557889999999999999998765444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=3.7e-16  Score=136.54  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      +..+..++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.|+++.+.++.  +..+.++|+.. .+      +.+
T Consensus       114 l~~~~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-~~------~~~  183 (254)
T d2nxca1         114 LARHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-AL------PFG  183 (254)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-HG------GGC
T ss_pred             HHhhcCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-cc------ccc
Confidence            44566789999999999998777666555 5899999999999999999887764  36778887643 12      357


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe---cChhHHHHHHH
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT---PDSSTIWAKYQ  157 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~---p~~~~l~~~~~  157 (312)
                      +||+|+++...+.       ...+++.+.++|||||+++++.   .+.+.+.+.+.
T Consensus       184 ~fD~V~ani~~~~-------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~  232 (254)
T d2nxca1         184 PFDLLVANLYAEL-------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMA  232 (254)
T ss_dssp             CEEEEEEECCHHH-------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred             ccchhhhcccccc-------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHH
Confidence            9999999876555       7788999999999999999862   23344544443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-16  Score=134.78  Aligned_cols=118  Identities=17%  Similarity=-0.011  Sum_probs=87.4

Q ss_pred             HHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      ..+......++.+|||||||+|..+..+++....+++|||+|+.+++.|+++....+  ..+.++..|+.....    ..
T Consensus        44 ~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~----~~  117 (229)
T d1zx0a1          44 HALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP----TL  117 (229)
T ss_dssp             HHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG----GS
T ss_pred             HHHHHhhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccc----cc
Confidence            345555667889999999999988887777666789999999999999999987654  346667766533111    11


Q ss_pred             cCCceeEEEeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++++||.|+.-.. ..+...+..+...+++++.++|||||+|++.
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            4688999874221 1223345677889999999999999999874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=2.6e-15  Score=129.31  Aligned_cols=106  Identities=15%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ++|+.+|||||||+|..+..++.. +...|+|+|+|+.|++.|+++....+   .+..+.+|.......     .+..+|
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~-----~~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDANKPQEY-----ANIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTTCGGGG-----TTTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeeccCccc-----ccccce
Confidence            358999999999999888888775 45699999999999999999876543   266788887764331     245666


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++++...+|+    .++.+.++.++.+.|||||++++..
T Consensus       144 v~~i~~~~~~----~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         144 VDVIYEDVAQ----PNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEEECCCS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEeeccccc----hHHHHHHHHHHHHhcccCceEEEEe
Confidence            6665554454    4678889999999999999998774

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.60  E-value=3e-15  Score=130.77  Aligned_cols=105  Identities=18%  Similarity=0.128  Sum_probs=89.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||||||+|..+..+++. +..+++++|+ +++++.|+++....+...+++++.+|+.+..        ..+||+|
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------~~~~D~v  150 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRKADAI  150 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSCEEEE
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------ccchhhe
Confidence            5579999999999988888766 4568999998 6799999999988776667999999986532        3579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++..++|+  .+.++...+|++++++|||||++++.-
T Consensus       151 ~~~~vlh~--~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         151 ILSFVLLN--WPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eecccccc--CCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            99999998  567778899999999999999999873

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=4.9e-15  Score=125.82  Aligned_cols=107  Identities=11%  Similarity=-0.014  Sum_probs=81.7

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      .++|+.+|||||||+|..+..++.. +..+|+|+|+|+.|++.|+++.+..+   .+.++.+|+.......   .....+
T Consensus        53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~---~~~~~v  126 (209)
T d1nt2a_          53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS---GIVEKV  126 (209)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT---TTCCCE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc---cccceE
Confidence            3568999999999999888877764 45689999999999999999987654   3889999987754411   112345


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++..  ++    ..+...+++++.++|||||++++..
T Consensus       127 d~v~~~~--~~----~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDI--AQ----KNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECC--CS----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecc--cC----hhhHHHHHHHHHHHhccCCeEEEEE
Confidence            6555432  22    3457889999999999999999874

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.3e-14  Score=129.71  Aligned_cols=107  Identities=16%  Similarity=0.101  Sum_probs=89.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..+++++..+|+|+|.|+ +++.|+++.+.++...++.++++|+.+.++      ++.+||+
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~~~D~  108 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFPKVDI  108 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSSCEEE
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------cccceeE
Confidence            347899999999999777766677778999999996 778898888887777779999999988776      5689999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      |++....++ +..+.....++..+.++|||||+++
T Consensus       109 i~se~~~~~-~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYF-LLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTT-BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEeccee-eccchhHHHHHHHHHhccCCCeEEE
Confidence            999776654 4556778889999999999999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.52  E-value=5.5e-14  Score=122.89  Aligned_cols=105  Identities=19%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||||||+|..+..++++ +..+++++|+ +++++.|+++....+...++.+..+|... +.       +..||+|
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~-------p~~~D~v  151 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL-------PVTADVV  151 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-------SCCEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-cc-------cccchhh
Confidence            5578999999999988888876 4568999998 78999999998877666679999999875 22       3569999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++..++|+  .+.++...+|++++++|||||++++.-
T Consensus       152 ~~~~vLh~--~~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         152 LLSFVLLN--WSDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccc--cCcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            99999998  567888999999999999999999873

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=7.1e-14  Score=118.01  Aligned_cols=114  Identities=14%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++..|||||||+|..+..+++. +...++|+|+++.++..|.++....+. .++.++++|+...  ...+  +++++|
T Consensus        27 ~~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l--~~~~--~~~~~d  101 (204)
T d2fcaa1          27 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTL--TDVF--EPGEVK  101 (204)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGH--HHHC--CTTSCC
T ss_pred             CCCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhh--hccc--Cchhhh
Confidence            345568999999999988888776 567999999999999999999887664 3599999998652  2222  568999


Q ss_pred             EEEeccchhhhcCCHHH------HHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHLQMCFETEER------ARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~------~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|.+.+...+ .. ...      ...+++.++++|||||.|++.+-+.
T Consensus       102 ~v~i~fp~P~-~k-~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~  147 (204)
T d2fcaa1         102 RVYLNFSDPW-PK-KRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR  147 (204)
T ss_dssp             EEEEESCCCC-CS-GGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH
T ss_pred             cccccccccc-ch-hhhcchhhhHHHHHHHHHHhCCCCcEEEEEECCh
Confidence            9999887654 11 111      1579999999999999999887443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=7.6e-14  Score=122.06  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=92.4

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc--CCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ--RKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~--~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      -+.|+.+|||+|||+|..+..++..  +..+|+++|+++++++.|+++++..  ....++.+.++|+.+..+      ++
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~------~~  166 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL------PD  166 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC------CT
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc------cC
Confidence            3569999999999999888877765  4569999999999999999987653  223458999999887666      57


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      +.||.|++..         .+...++.++.++|||||++++..|+-+.+.+...
T Consensus       167 ~~fDaV~ldl---------p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~  211 (264)
T d1i9ga_         167 GSVDRAVLDM---------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVE  211 (264)
T ss_dssp             TCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHH
T ss_pred             CCcceEEEec---------CCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHH
Confidence            8999997532         12456799999999999999999999977655443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.50  E-value=8.4e-14  Score=120.96  Aligned_cols=110  Identities=14%  Similarity=0.036  Sum_probs=89.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.|+.+|||+|||+|..+..+++.  +..+|+++|+++++++.|+++++......++++..+|+.+. +      ++..|
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~------~~~~f  155 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-I------SDQMY  155 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-C------CSCCE
T ss_pred             CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-c------cccee
Confidence            458999999999999877777664  45699999999999999999998765455699999998764 2      46789


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |.|++...         +...++.++.++|||||++++..|+.+.+.+
T Consensus       156 D~V~ld~p---------~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~  194 (250)
T d1yb2a1         156 DAVIADIP---------DPWNHVQKIASMMKPGSVATFYLPNFDQSEK  194 (250)
T ss_dssp             EEEEECCS---------CGGGSHHHHHHTEEEEEEEEEEESSHHHHHH
T ss_pred             eeeeecCC---------chHHHHHHHHHhcCCCceEEEEeCCcChHHH
Confidence            99986432         1346799999999999999999999765543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=3.7e-14  Score=127.69  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=86.6

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|.....+++.+..+|+|+|.|+.+ ..|++..+.++...++.++++|+.+.++      +.++||+|
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~D~i  104 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKVDII  104 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCEEEE
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc------ccceeEEE
Confidence            3789999999999977666667777799999999764 6666666666666679999999988766      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      ++....++ +..+...+.++..+.++|||||.++
T Consensus       105 vs~~~~~~-l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         105 ISEWMGYC-LFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EECCCBBT-BTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeee-eccHHHHHHHHHHHHhcCCCCeEEE
Confidence            98766554 4556678899999999999999986

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=5.5e-14  Score=119.59  Aligned_cols=108  Identities=11%  Similarity=0.015  Sum_probs=83.2

Q ss_pred             HHHHHHh-cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ   98 (312)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~   98 (312)
                      ..+++.. ++++.+|||||||+|..+..+++.  ....|+++|+++++++.|+++.+..+. .++.++++|......   
T Consensus        65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~~~~~---  140 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVP---  140 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG---
T ss_pred             HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchHHccc---
Confidence            3344443 568999999999999877766654  346899999999999999999886543 347788888766444   


Q ss_pred             hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                         .+++||+|++..+++++          ..++.+.|||||++++..
T Consensus       141 ---~~~~fD~I~~~~~~~~~----------p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         141 ---EFSPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             ---GGCCEEEEEECSBBSCC----------CHHHHHHEEEEEEEEEEB
T ss_pred             ---cccchhhhhhhccHHHh----------HHHHHHhcCCCcEEEEEE
Confidence               45789999999988762          134567899999998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=123.38  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=86.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..+++++..+|+|+|.|+.++. |++....++...++.++++|+.+..+      +..+||+|
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~~D~I  106 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL------PVEKVDVI  106 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC------SCSCEEEE
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC------ccccceEE
Confidence            478899999999997777777777789999999998764 55555555555679999999988766      56899999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL  143 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i  143 (312)
                      ++....|+ ...+.....++....++|||||+++
T Consensus       107 vse~~~~~-~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         107 ISEWMGYF-LLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EECCCBTT-BTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeee-cccccccHHHHHHHHhcCCCCcEEe
Confidence            99766664 4456678888888999999999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=116.33  Aligned_cols=113  Identities=14%  Similarity=0.133  Sum_probs=85.1

Q ss_pred             HHHHHHHHh---cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCC----CceEEEEEcCC
Q 021467           20 AKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRK----NFIAEFFEADP   90 (312)
Q Consensus        20 vk~~li~~~---~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f~~~D~   90 (312)
                      +...+++.+   ++++.+|||+|||+|..+..+++.  ...+|+|+|+++++++.|+++.+..+.    ...+.+.++|+
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            344555543   468999999999999766655543  456999999999999999998865332    12478899998


Q ss_pred             CCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467           91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus        91 ~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      .....      ...+||+|++..+++..          ...+.+.|||||++++.+..
T Consensus       142 ~~~~~------~~~~fD~I~~~~~~~~i----------p~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         142 RMGYA------EEAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             GGCCG------GGCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESC
T ss_pred             ccccc------hhhhhhhhhhhcchhhc----------CHHHHhhcCCCcEEEEEEcc
Confidence            76554      45799999999987762          23467899999999986543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=4.6e-13  Score=120.84  Aligned_cols=126  Identities=17%  Similarity=0.108  Sum_probs=96.6

Q ss_pred             HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467           23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK  102 (312)
Q Consensus        23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~  102 (312)
                      ..+..++.++.+|||+|||+|+.+...+..+..+|+++|+|+.+++.|++++..++...+++++++|+.+.  ...+...
T Consensus       137 ~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~--~~~~~~~  214 (324)
T d2as0a2         137 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE--MEKLQKK  214 (324)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--HHHHHHT
T ss_pred             HHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh--hHHHHhc
Confidence            34566778899999999999998888877777799999999999999999999888766789999998652  1222224


Q ss_pred             CCceeEEEeccchhh-----hcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          103 ANQADLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~-----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ..+||+|++......     ..........++..+.++|+|||+++.++....
T Consensus       215 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~  267 (324)
T d2as0a2         215 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH  267 (324)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred             cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            579999998543211     011123456788999999999999998876653

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.42  E-value=1.2e-12  Score=110.39  Aligned_cols=118  Identities=15%  Similarity=0.060  Sum_probs=88.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...+..|||||||+|..+..+++. +...++|+|+++.++..|.++....+. .++.++.+|+....  ..+  ++.++|
T Consensus        29 ~~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~--~~~--~~~~~~  103 (204)
T d1yzha1          29 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLT--DYF--EDGEID  103 (204)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGG--GTS--CTTCCS
T ss_pred             CCCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHh--hhc--cCCcee
Confidence            344568999999999988888776 567899999999999999998877653 24999999987632  222  468999


Q ss_pred             EEEeccchhhhc----CCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          108 LVCCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       108 ~V~~~~~lh~~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                      .|.+.+.-.+.=    ...--...+|+.++++|||||.+++.|-+.+.
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y  151 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL  151 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccH
Confidence            999888643200    00001268899999999999999988755443

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=7.2e-13  Score=113.45  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=82.6

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++|+.+|||+|||+|..+..+++.  +.++|+|+|+|+.|++.++++.+..+.   +..+..|......   +......+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~---~~~i~~d~~~~~~---~~~~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRN---IVPILGDATKPEE---YRALVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTT---EEEEECCTTCGGG---GTTTCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCC---ceEEEEECCCccc---ccccccce
Confidence            458999999999999988888775  456999999999999999998765432   6677888765432   11134679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+|++....      .++...+++++.+.|||||++++.+
T Consensus       145 D~i~~d~~~------~~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         145 DVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEccc------cchHHHHHHHHHHhcccCCeEEEEE
Confidence            988765432      3457889999999999999999863

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.3e-13  Score=119.72  Aligned_cols=113  Identities=15%  Similarity=0.083  Sum_probs=84.6

Q ss_pred             HHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-------C-CCceEEEEEcCCCCC
Q 021467           24 LIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-------R-KNFIAEFFEADPCAE   93 (312)
Q Consensus        24 li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~-------~-~~~~~~f~~~D~~~~   93 (312)
                      +++.. ++++.+|||||||+|..+..++.. +..+++|+|+|+.+++.|++..+..       + ...+++|+++|+.+.
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~  222 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE  222 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence            34443 568899999999999888877654 5668999999999999998865442       1 123589999999886


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++.+.+    ...|+|++...+|     ..++...|+++.+.|||||+++.+
T Consensus       223 ~~~~~~----~~advi~~~~~~f-----~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         223 EWRERI----ANTSVIFVNNFAF-----GPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHH----HHCSEEEECCTTT-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccc----CcceEEEEcceec-----chHHHHHHHHHHHhCCCCcEEEEe
Confidence            653221    2357888765333     255778899999999999999876

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=4.7e-13  Score=117.39  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=87.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      +.|+.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++..+....+.+...|+... +      ....|
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~-~------~~~~~  173 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-F------DEKDV  173 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-C------SCCSE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc-c------cccce
Confidence            569999999999999888877665  45699999999999999999998876555688888886432 2      35779


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA  154 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~  154 (312)
                      |.|+...         .+...+++++.++|||||++++..|+.+.+.+
T Consensus       174 D~V~~d~---------p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~  212 (266)
T d1o54a_         174 DALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQE  212 (266)
T ss_dssp             EEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             eeeEecC---------CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHH
Confidence            9886432         22567899999999999999999999765543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.4e-12  Score=113.38  Aligned_cols=115  Identities=17%  Similarity=0.063  Sum_probs=85.9

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhc----------CCCceEEEEEcCCCCCch
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQ----------RKNFIAEFFEADPCAENF   95 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~----------~~~~~~~f~~~D~~~~~~   95 (312)
                      -+.|+.+|||+|||+|..+..++..  +.++|+++|+++++++.|+++++..          ....++.+.+.|+.....
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence            4669999999999999888877765  4569999999999999999988642          123458999999876432


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      .  +  ....||.|++-..         +...++.++.++|||||++++..|+-+.+.+.
T Consensus       175 ~--~--~~~~fD~V~LD~p---------~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~  221 (324)
T d2b25a1         175 D--I--KSLTFDAVALDML---------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIEL  221 (324)
T ss_dssp             ----------EEEEEECSS---------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHH
T ss_pred             c--c--CCCCcceEeecCc---------CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHH
Confidence            1  1  3578999975321         13357999999999999999999998766543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.35  E-value=1.9e-12  Score=110.56  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             HHHHH-hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467           23 ALIKI-YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE  101 (312)
Q Consensus        23 ~li~~-~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~  101 (312)
                      .+++. -++++.+|||||||+|..+..++.. ..+|+++|+++++++.|+++.....   ++.++++|......      
T Consensus        61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~---nv~~~~~d~~~g~~------  130 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYE------  130 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCG------
T ss_pred             HHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhccc---ccccccCchhhcch------
Confidence            34443 3568999999999999766655554 4699999999999999999876532   48999999765433      


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ..++||+|++..+++..          ...+.+.|||||++++-.
T Consensus       131 ~~~pfD~Iiv~~a~~~i----------p~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPTL----------LCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSSC----------CHHHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhhh----------hHHHHHhcCCCCEEEEEE
Confidence            35789999999877651          234567899999999753

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.32  E-value=7.8e-12  Score=115.27  Aligned_cols=120  Identities=16%  Similarity=0.107  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC-------C-CceEEE-EE
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR-------K-NFIAEF-FE   87 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~-------~-~~~~~f-~~   87 (312)
                      +++..++-..-+.++.+|||||||.|..+..++.. +..+++|||+|+.+++.|+++.+..+       . .....+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            44454443344679999999999999888877765 56689999999999999999876421       0 111222 34


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        88 ~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|....+....   .-..+|+|.+...+|     .+++...|+++.+.|||||+++.+
T Consensus       283 ~~f~~~~~~d~---~~~~adVV~inn~~f-----~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         283 KSFVDNNRVAE---LIPQCDVILVNNFLF-----DEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             SCSTTCHHHHH---HGGGCSEEEECCTTC-----CHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             echhhcccccc---ccccceEEEEecccC-----chHHHHHHHHHHHhcCCCcEEEEe
Confidence            44444332111   124588888764322     356788999999999999999865

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.32  E-value=6.7e-12  Score=100.74  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=84.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|||+|||+|......+..+..+|+++|.++.+++.+++..+..+...+++++++|+...     +....++||+|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-----l~~~~~~fDiIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-----IDCLTGRFDLVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-----HHHBCSCEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-----ccccccccceeE
Confidence            588999999999988877777788899999999999999999998877767799999997542     122468899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~  148 (312)
                      +.....     .......+..+.  +.|+|||.+++..+.
T Consensus        89 ~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          89 LDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             ECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             echhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            865322     233445555554  579999999987554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=1.1e-11  Score=108.26  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=87.2

Q ss_pred             HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467           24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .+.....++.+|||+|||+|.....+++.+..+|+++|+++.+++.++++.+.++...+++++++|+.+..       ..
T Consensus       100 ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-------~~  172 (260)
T d2frna1         100 RMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-------GE  172 (260)
T ss_dssp             HHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-------CC
T ss_pred             HHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-------cC
Confidence            34555678999999999999998888877767999999999999999999998887777999999997743       35


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +.||.|++... ++       ...++..+.+.|++||++.+.
T Consensus       173 ~~~D~Ii~~~p-~~-------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         173 NIADRILMGYV-VR-------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             SCEEEEEECCC-SS-------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             CCCCEEEECCC-Cc-------hHHHHHHHHhhcCCCCEEEEE
Confidence            78999987643 22       234677788899999998654

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.8e-11  Score=107.33  Aligned_cols=114  Identities=11%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             HHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           26 KIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      ......+.+|||+|||+|.....++.. +..+++|+|+|+.+++.|+++.+..+. .+++|+++|..+. +      ++.
T Consensus       103 ~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~-~------~~~  174 (274)
T d2b3ta1         103 ARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSA-L------AGQ  174 (274)
T ss_dssp             HHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGG-G------TTC
T ss_pred             hhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccc-c------CCC
Confidence            344456789999999999877776654 567999999999999999999887764 2489999998662 2      357


Q ss_pred             ceeEEEeccchh-------------h----hcC----CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467          105 QADLVCCFQHLQ-------------M----CFE----TEERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       105 ~fD~V~~~~~lh-------------~----~~~----~~~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +||+|+|+-..-             |    ++.    .....+.++.++.++|+|||.+++-+.
T Consensus       175 ~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig  238 (274)
T d2b3ta1         175 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG  238 (274)
T ss_dssp             CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             ceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999999974421             1    000    014457889999999999999998754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.26  E-value=1.8e-11  Score=109.81  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ..++.+|||++||+|+.....+..+..+|+++|+|+.+++.|+++++.++.. .+++++++|+.+.  ...+.....+||
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~--l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY--FKYARRHHLTYD  219 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH--HHHHHHTTCCEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHH--HHHHHhhcCCCC
Confidence            4468999999999999887776667779999999999999999999877653 4589999998542  112222357899


Q ss_pred             EEEeccch-----hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~l-----h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|++.-.-     ...+.-..+...+++.+.++|+|||.++.++...
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~  266 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  266 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            99985321     1112224556789999999999999999886654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=5.6e-12  Score=113.24  Aligned_cols=115  Identities=13%  Similarity=0.056  Sum_probs=86.6

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      ++.+|||+|||+|+.+..++. +..+|+++|+|+.+++.|+++.+.++. .+++++++|+.+.  ...+.....+||+|+
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~--~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDL--LRRLEKEGERFDLVV  220 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHH--HHHHHHTTCCEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHH--hhhhHhhhcCCCEEE
Confidence            578999999999998877654 566999999999999999999988775 2488999997552  122222457999999


Q ss_pred             eccchh-----hhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          111 CFQHLQ-----MCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       111 ~~~~lh-----~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +.....     ..+........++..+.++|||||.++.++.+.
T Consensus       221 ~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         221 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            854311     001123445678999999999999999886654

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=6.7e-11  Score=98.54  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             CCCCEEEEECCCCCccHHHH----HHc-----CCCeEEEEeCChHHHHHHHHHHH------------------hcCC---
Q 021467           30 HPYVTVCDLYCGAGVDVDKW----ETA-----LIANYIGIDVATSGIGEARDTWE------------------NQRK---   79 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~----~~~-----~~~~v~giDis~~~i~~a~~r~~------------------~~~~---   79 (312)
                      .+..+||++|||+|.....+    ...     ...+++|+|+|+.+|+.|++-.-                  ....   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            35579999999999743222    111     12379999999999999985210                  0000   


Q ss_pred             ---------CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           80 ---------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        80 ---------~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                               ...+.+...+......     .+.+.||+|+|.++|+|  -+.+..++++++++++|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiY--f~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGG--SCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHh--cCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     0113444444443221     13578999999999999  66888899999999999999998764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=1.7e-11  Score=100.24  Aligned_cols=112  Identities=11%  Similarity=0.100  Sum_probs=77.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      ...++.+|||+|||+|......+..+. +++++|+++.+++.++++++..+...++....+|.    +.........+||
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~----~~~~~~~~~~~fD  112 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV----FLPEAKAQGERFT  112 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH----HHHHHHHTTCCEE
T ss_pred             cccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhc----ccccccccCCccc
Confidence            456788999999999987777666554 89999999999999999998876544443333322    1111122457899


Q ss_pred             EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      +|++.-..+.  ...+....++.  ..+|+|||++++..+.
T Consensus       113 ~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         113 VAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             eeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            9999765443  33333444443  3689999999887543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.20  E-value=7.6e-11  Score=104.70  Aligned_cols=127  Identities=16%  Similarity=0.113  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchh
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFE   96 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~   96 (312)
                      .|++..+ .. ..++.+|||++||+|+.....+..+. +|++||+|+.+++.|+++.+.++... +++|+++|+.+.  .
T Consensus       121 ~~~~~~~-~~-~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~--l  195 (309)
T d2igta1         121 EWLKNAV-ET-ADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--I  195 (309)
T ss_dssp             HHHHHHH-HH-SSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--H
T ss_pred             HHHHHHH-hh-ccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh--H
Confidence            4544443 22 23578999999999988887766555 89999999999999999988776533 589999998652  1


Q ss_pred             hhhhhcCCceeEEEec---cchhh---hcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           97 TQMQEKANQADLVCCF---QHLQM---CFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        97 ~~~~~~~~~fD~V~~~---~~lh~---~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ........+||+|++.   |+...   .+.-......++..+.++|+|||.+++++.++
T Consensus       196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         196 QREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             HHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             HHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            1112235789999984   22110   11224556778888999999999766654433

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.20  E-value=2.9e-11  Score=102.38  Aligned_cols=108  Identities=12%  Similarity=0.075  Sum_probs=82.4

Q ss_pred             HHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467           22 TALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ  100 (312)
Q Consensus        22 ~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~  100 (312)
                      ..+++.. +.++.+|||||||+|..+..++..-..+|+++|+++++++.|++++...+. .++.++++|......     
T Consensus        68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g~~-----  141 (215)
T d1jg1a_          68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGFP-----  141 (215)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCCG-----
T ss_pred             HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccCCc-----
Confidence            3344433 568999999999999776666544335799999999999999999987652 458999999876444     


Q ss_pred             hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                       ..++||.|++..++..  .    .    ..+.+.|+|||++++-.
T Consensus       142 -~~~pfD~Iiv~~a~~~--i----p----~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 -PKAPYDVIIVTAGAPK--I----P----EPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             -GGCCEEEEEECSBBSS--C----C----HHHHHTEEEEEEEEEEE
T ss_pred             -ccCcceeEEeeccccc--C----C----HHHHHhcCCCCEEEEEE
Confidence             4689999999987765  2    1    22456899999999764

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=6e-11  Score=101.03  Aligned_cols=111  Identities=10%  Similarity=0.062  Sum_probs=80.6

Q ss_pred             HHHHHHHHh---cCCCCEEEEECCCCCccHHHHHHc-------CCCeEEEEeCChHHHHHHHHHHHhcCC----CceEEE
Q 021467           20 AKTALIKIY---SHPYVTVCDLYCGAGVDVDKWETA-------LIANYIGIDVATSGIGEARDTWENQRK----NFIAEF   85 (312)
Q Consensus        20 vk~~li~~~---~~~~~~VLDlGCG~G~~l~~~~~~-------~~~~v~giDis~~~i~~a~~r~~~~~~----~~~~~f   85 (312)
                      +...+++..   +.++.+|||||||+|..+..+++.       ...+|+++|+++++++.|+++......    ..++.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            344555554   568999999999999765544432       124899999999999999887643210    123899


Q ss_pred             EEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           86 FEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        86 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      .++|......      +.++||+|++..++..  ..        ..+.+.|||||++++..
T Consensus       146 ~~~d~~~~~~------~~~~fD~Iiv~~a~~~--~p--------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         146 VEGDGRKGYP------PNAPYNAIHVGAAAPD--TP--------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             EESCGGGCCG------GGCSEEEEEECSCBSS--CC--------HHHHHTEEEEEEEEEEE
T ss_pred             Eecccccccc------cccceeeEEEEeechh--ch--------HHHHHhcCCCcEEEEEE
Confidence            9999876544      4578999999998765  11        23568999999998864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.09  E-value=5.8e-10  Score=91.87  Aligned_cols=124  Identities=16%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhcC--CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467           18 EFAKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF   95 (312)
Q Consensus        18 n~vk~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~   95 (312)
                      ..++..+.+....  .+.+|||++||+|......+..+..+|+++|.++.+++.++++.+..+...+++++++|+...  
T Consensus        26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~--  103 (182)
T d2fhpa1          26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA--  103 (182)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH--
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh--
Confidence            4555555554432  689999999999998888888888899999999999999999988766656799999998542  


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecC
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~  148 (312)
                      ...+.....+||+|++.-..+.  ..   ....+..+.  .+|++||++++-.+.
T Consensus       104 l~~~~~~~~~fDlIflDPPY~~--~~---~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         104 LEQFYEEKLQFDLVLLDPPYAK--QE---IVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHTTCCEEEEEECCCGGG--CC---HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhhhcccCCCcceEEechhhhh--hH---HHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            1122223568999998765443  22   344455554  479999999876543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=7.4e-10  Score=91.89  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=89.9

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCce
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~f  106 (312)
                      ..++..+||++||+|+.+..++.. +..+|+|+|.+++|++.|+++.+..+  .++.+++++..+...  .+. ...++|
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~--~~~~~~~~~v   96 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADF--LLKTLGIEKV   96 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHH--HHHHTTCSCE
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHH--HHHHcCCCCc
Confidence            347899999999999998888775 55799999999999999999987643  348888887655322  111 124789


Q ss_pred             eEEEeccchhh-----hcCCHHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHH
Q 021467          107 DLVCCFQHLQM-----CFETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKY  156 (312)
Q Consensus       107 D~V~~~~~lh~-----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~  156 (312)
                      |.|+.-.++-.     .-.........|..+.++|+|||.+++.+-.+  +.+++++
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~  153 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKET  153 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHH
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHH
Confidence            99987654310     00124556788999999999999999886655  3344443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=4.9e-10  Score=93.77  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|||+|||+|..+...+..+..+|+|+|+++.+++.|+++.+..+  .+..++.+|+..         .+.+||+|+
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~--~~~~~~~~d~~~---------~~~~fD~Vi  114 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK--GKFKVFIGDVSE---------FNSRVDIVI  114 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT--TSEEEEESCGGG---------CCCCCSEEE
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC--CCceEEECchhh---------hCCcCcEEE
Confidence            678999999999988777666677799999999999999999887654  357888888754         247899999


Q ss_pred             eccchhh
Q 021467          111 CFQHLQM  117 (312)
Q Consensus       111 ~~~~lh~  117 (312)
                      ++-....
T Consensus       115 ~nPP~~~  121 (201)
T d1wy7a1         115 MNPPFGS  121 (201)
T ss_dssp             ECCCCSS
T ss_pred             EcCcccc
Confidence            9876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.07  E-value=2.6e-10  Score=94.97  Aligned_cols=70  Identities=16%  Similarity=0.068  Sum_probs=57.8

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .|.+|||+|||+|......+..+..+|+|+|+++.+++.|+++...      +.++++|+..         .+++||+|+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~------~~~~~~D~~~---------l~~~fD~Vi  112 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG------VNFMVADVSE---------ISGKYDTWI  112 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT------SEEEECCGGG---------CCCCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc------ccEEEEehhh---------cCCcceEEE
Confidence            5889999999999776666666777999999999999999987643      6799999855         247899999


Q ss_pred             eccch
Q 021467          111 CFQHL  115 (312)
Q Consensus       111 ~~~~l  115 (312)
                      ++-.+
T Consensus       113 ~NPPf  117 (197)
T d1ne2a_         113 MNPPF  117 (197)
T ss_dssp             ECCCC
T ss_pred             eCccc
Confidence            98654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.1e-09  Score=92.49  Aligned_cols=108  Identities=12%  Similarity=0.045  Sum_probs=80.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f  106 (312)
                      +..+|||+|||+|..+..++.+  ...+++++|+++++++.|++.++..+...+++++.+|..+. + ..+.  ....+|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~-l-~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDL-I-PQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH-G-GGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccc-c-cchhhccccccc
Confidence            3479999999999888777664  34699999999999999999998877767799999997652 1 1111  124689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|++-..-.+     ......+.+..++|||||++++.
T Consensus       134 D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~D  167 (214)
T d2cl5a1         134 DMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLAD  167 (214)
T ss_dssp             EEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEES
T ss_pred             ceeeecccccc-----cccHHHHHHHhCccCCCcEEEEe
Confidence            99988643222     12334577788999999988764

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.1e-09  Score=92.79  Aligned_cols=127  Identities=10%  Similarity=0.046  Sum_probs=86.9

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|||+|||+|.....++.. +..+++|+|+|+++++.|+++.+.++...++.+...+.....+........++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            4569999999999766665554 557999999999999999999998877777888877655432221112235789999


Q ss_pred             EeccchhhhcCC-------------------------------HHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHH
Q 021467          110 CCFQHLQMCFET-------------------------------EERARRLLQNVSSLLKPGGYFLGITPDS---STIWAK  155 (312)
Q Consensus       110 ~~~~~lh~~~~~-------------------------------~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~  155 (312)
                      +|+-..+..-+.                               ..-.+.++++....++..|.+...+...   ..+.+.
T Consensus       141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~  220 (250)
T d2h00a1         141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEE  220 (250)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHH
T ss_pred             EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHH
Confidence            998765531110                               0125666777788899999887655433   344444


Q ss_pred             HH
Q 021467          156 YQ  157 (312)
Q Consensus       156 ~~  157 (312)
                      ++
T Consensus       221 L~  222 (250)
T d2h00a1         221 LR  222 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1e-09  Score=92.87  Aligned_cols=108  Identities=14%  Similarity=0.086  Sum_probs=82.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ...+|||||||+|..+..++..  ..++++.+|++++..+.|++.++..+...+++++.+|+.+...........++||+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            4579999999999766666554  34699999999999999999999888777799999987552110001113578999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+....-+.       ....+..+.++|+|||.+++.
T Consensus       139 ifiD~dk~~-------y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         139 AVVDADKEN-------CSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             EEECSCSTT-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeCCHHH-------HHHHHHHHHHHhcCCcEEEEe
Confidence            998764333       566778888999999999987

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.94  E-value=5.2e-09  Score=89.96  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||||||+|..+..++++ +..+++..|+.+ .++       ......+++++.+|..+. .        ...|++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~-------~~~~~~ri~~~~gd~~~~-~--------p~~D~~  143 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIE-------NAPPLSGIEHVGGDMFAS-V--------PQGDAM  143 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHT-------TCCCCTTEEEEECCTTTC-C--------CCEEEE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhh-------ccCCCCCeEEecCCcccc-c--------ccceEE
Confidence            4579999999999988888766 556899999843 332       222234599999998752 2        346999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++...+|.  .+.++...+|++++++|+|||.+++.
T Consensus       144 ~l~~vLh~--~~de~~~~iL~~~~~aL~pgg~llI~  177 (244)
T d1fp1d2         144 ILKAVCHN--WSDEKCIEFLSNCHKALSPNGKVIIV  177 (244)
T ss_dssp             EEESSGGG--SCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEehhhhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            99999999  67889999999999999999999987

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=2e-09  Score=88.60  Aligned_cols=107  Identities=8%  Similarity=0.002  Sum_probs=80.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+|||++||+|......+..+..+|++||.++.+++.++++++..+. .+..++.+|+...     +.....+||+|+
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~-----l~~~~~~fDlIf  116 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSF-----LAQKGTPHNIVF  116 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHH-----HSSCCCCEEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeeccccc-----ccccccccCEEE
Confidence            5789999999999888888888888999999999999999999876543 3477888886431     222457899999


Q ss_pred             eccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecC
Q 021467          111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~  148 (312)
                      +.-....  ..   ....+..+.  .+|+++|.+++-...
T Consensus       117 ~DPPY~~--~~---~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         117 VDPPFRR--GL---LEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             ECCSSST--TT---HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             EcCcccc--ch---HHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            9765443  22   334455444  479999999986543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.92  E-value=6.2e-09  Score=90.65  Aligned_cols=109  Identities=17%  Similarity=0.024  Sum_probs=79.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +..+|||+|||+|..+..++..+..+|+++|+|+++++.|+++.+.++...++.+...|..+...     ...++||+|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~-----~~~~~fDlIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-----EKFASIEMIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-----GGTTTCCEEE
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc-----cccCcccEEE
Confidence            34689999999998777666667779999999999999999999887766668888888765321     1347899999


Q ss_pred             eccchh-------h--hcCCH----------HHHHHHHHHHHhccCCCcEEEEEec
Q 021467          111 CFQHLQ-------M--CFETE----------ERARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       111 ~~~~lh-------~--~~~~~----------~~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      ++-..-       .  -++..          +..+.+   +.++|+|||.+++-+.
T Consensus       185 sNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         185 SNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             ECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEEECC
T ss_pred             EcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEEEEC
Confidence            974310       0  01111          223333   4678999999998754

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.77  E-value=1.7e-08  Score=86.62  Aligned_cols=96  Identities=16%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||||||+|..+..++++ +..++++.|+. +.++.+       +...+++++.+|..+.         ...+|++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~~~rv~~~~gD~f~~---------~p~aD~~  142 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-------SGSNNLTYVGGDMFTS---------IPNADAV  142 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-------CCBTTEEEEECCTTTC---------CCCCSEE
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-------cccCceEEEecCcccC---------CCCCcEE
Confidence            3468999999999988888776 55699999984 333322       2234599999998762         2358999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCC---cEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG---G~~i~~  145 (312)
                      ++...+|+  .+.++...+|+++++.|+||   |++++.
T Consensus       143 ~l~~vLHd--w~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         143 LLKYILHN--WTDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             EEESCGGG--SCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             EEEeeccc--CChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence            99999999  78899999999999999999   667665

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.77  E-value=1.7e-08  Score=88.22  Aligned_cols=112  Identities=13%  Similarity=0.029  Sum_probs=80.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc---------CCCceEEEEEcCCCCCchhhhh
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ---------RKNFIAEFFEADPCAENFETQM   99 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~---------~~~~~~~f~~~D~~~~~~~~~~   99 (312)
                      .++..+||-||+|.|+.+..+++.+..+++++||++++++.|++-....         ....+++++.+|+...     +
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-----l  144 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-----I  144 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-----H
T ss_pred             CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-----H
Confidence            4566899999999998888887777779999999999999998755321         1234588999987541     2


Q ss_pred             hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      . .+++||+|++-..-.......-.-.++++.+.+.|+|||+++...
T Consensus       145 ~-~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 K-NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             H-HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             h-ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            2 357899998744321100000012678999999999999998764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.8e-08  Score=90.14  Aligned_cols=109  Identities=21%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~------~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      ++.+|||.|||+|+.+..+...      ...+++|+|+++.++..|+.+....+.  ...+.++|.....       ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~  187 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-------LVD  187 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-------ccc
Confidence            5678999999999888766432      223799999999999999887765442  3566777765533       357


Q ss_pred             ceeEEEeccchhhhcCCHH---------------HHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEE---------------RARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~---------------~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|+++-.+... ...+               ....++..+.+.|+|||++.+.+|++
T Consensus       188 ~fD~vi~NPPy~~~-~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         188 PVDVVISDLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             CEEEEEEECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccccCCCCCCC-ccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            89999998664321 1111               12347999999999999999998876

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.70  E-value=3e-07  Score=81.49  Aligned_cols=178  Identities=15%  Similarity=0.078  Sum_probs=107.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~  103 (312)
                      .+...+||.||.|.|+.+..+++. +..+++++||+++.++.|++.+....    ...+++++.+|+...     +...+
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-----l~~~~  149 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-----LERTE  149 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-----HHHCC
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-----hhhcC
Confidence            445679999999999888777665 46799999999999999998764311    123588999987542     22245


Q ss_pred             CceeEEEeccchhhhcCCH---HHHHHHHHHHHhccCCCcEEEEEe--cC--hhHHHHHHHHhHHhhhcCCCCCCCCCCC
Q 021467          104 NQADLVCCFQHLQMCFETE---ERARRLLQNVSSLLKPGGYFLGIT--PD--SSTIWAKYQKNVEAYHNRSSSMKPNLVP  176 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~---~~~~~~l~~i~~~LkpGG~~i~~~--p~--~~~l~~~~~~~~~~~~~~~~~~~~~~~g  176 (312)
                      .+||+|++-..=.+...+.   ---+++++.+++.|+|||+++...  +.  ...+.+.+.+.+.           ..|+
T Consensus       150 ~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~-----------~~F~  218 (312)
T d1uira_         150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR-----------EAFR  218 (312)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH-----------TTCS
T ss_pred             CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH-----------HhCc
Confidence            7899998643200000000   013678999999999999998753  22  2334444433222           1344


Q ss_pred             CcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEE
Q 021467          177 NCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEY  234 (312)
Q Consensus       177 n~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~l  234 (312)
                      +.   ..|..       ..|.||..+.|.+.-...+.  --.....+..-.++.++++
T Consensus       219 ~V---~~y~~-------~vPs~~~~w~f~~aS~~~~p--~~~~~~~~~~~~~~~~~~~  264 (312)
T d1uira_         219 YV---RSYKN-------HIPGFFLNFGFLLASDAFDP--AAFSEGVIEARIRERNLAL  264 (312)
T ss_dssp             EE---EEEEE-------EEGGGTEEEEEEEEESSSCT--TCCCTTHHHHHHHHTTCCC
T ss_pred             eE---EEEEe-------eeCCcCCCCEeEEEeCCCCc--cccChhhhhhhHhhcCCCc
Confidence            32   12322       24677766666554322111  1223444666666666654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=3.7e-08  Score=83.53  Aligned_cols=107  Identities=9%  Similarity=0.044  Sum_probs=82.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA  106 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f  106 (312)
                      ...+||++|++.|..+..++..  ..++++.+|++++..+.|++.++..+...+++++.+|+.+. +......  ..++|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~-L~~l~~~~~~~~~f  137 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-LDEMIKDEKNHGSY  137 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHCGGGTTCB
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH-HHHHHhccccCCce
Confidence            4579999999999766666654  34699999999999999999999887777899999987541 1111111  24689


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+.-..-.+       ....++.+.++|+|||.+++.
T Consensus       138 D~iFiDa~k~~-------y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         138 DFIFVDADKDN-------YLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             SEEEECSCSTT-------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             eEEEeccchhh-------hHHHHHHHHhhcCCCcEEEEc
Confidence            99998654332       567788888999999999987

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=1.1e-07  Score=81.49  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ...+|||||||+|..+..++++ +..++++.|+.+. ++       ......++++..+|..+. .      +  ..|++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~-~------P--~ad~~  143 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVS-I------P--KADAV  143 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTC-C------C--CCSCE
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEeccccccc-C------C--CcceE
Confidence            3578999999999988888876 5569999999753 22       222233589999998762 2      2  35777


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +....+|.  .+.++...+|++++++|+|||.+++.
T Consensus       144 ~l~~vlh~--~~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         144 FMKWICHD--WSDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             ECSSSSTT--SCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEEeec--CCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            78888888  67889999999999999999999887

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=1.5e-07  Score=77.01  Aligned_cols=110  Identities=12%  Similarity=0.061  Sum_probs=79.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .+.+|||+.||+|......+.++..+++.||.+..+++..+++.+..+.. ....++..|+....  .. .....+||+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l--~~-~~~~~~fDlI  119 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL--KQ-PQNQPHFDVV  119 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT--TS-CCSSCCEEEE
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc--cc-cccCCcccEE
Confidence            57899999999999888888889999999999999999999998765432 23556666643211  00 0124579999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecC
Q 021467          110 CCFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPD  148 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~  148 (312)
                      ++--....  .   .....+..+.  .+|+++|.+++-.+.
T Consensus       120 FlDPPY~~--~---~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         120 FLDPPFHF--N---LAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EECCCSSS--C---HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EechhHhh--h---hHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            98766443  2   2445566665  479999999987554

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.50  E-value=9.4e-08  Score=79.93  Aligned_cols=103  Identities=19%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||.|||+|..+..+...  ....++|+|+++.++..++          ....+++|.....       ....||
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----------~~~~~~~~~~~~~-------~~~~fd   80 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----------WAEGILADFLLWE-------PGEAFD   80 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT----------TEEEEESCGGGCC-------CSSCEE
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc----------cceeeeeehhccc-------cccccc
Confidence            46789999999999888777654  4457999999987643321          2566777765433       347899


Q ss_pred             EEEeccchhhhcC-------------------------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHLQMCFE-------------------------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~lh~~~~-------------------------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +|++.........                         .......++..+.+.|+|||++.+.+|++
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            9998765321100                         00113466788899999999999998776

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=1.2e-06  Score=71.43  Aligned_cols=113  Identities=13%  Similarity=0.126  Sum_probs=82.7

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD  107 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD  107 (312)
                      ..++..++|..||.||.+..++... .+|+|+|.++++++.|+++...     ++.+++.+...  +...+.. ..+.+|
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~~~-----~~~~~~~~f~~--~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLHLP-----GLTVVQGNFRH--LKRHLAALGVERVD   87 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTCCT-----TEEEEESCGGG--HHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcccc-----ceeEeehHHHH--HHHHHHHcCCCccC
Confidence            4588999999999999999988865 5999999999999999876422     37888887654  2222221 246799


Q ss_pred             EEEeccch-----hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQHL-----QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~l-----h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|+.-.++     .............|....+.|+|||.+++.+-.+
T Consensus        88 gIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          88 GILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             EEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            99875542     1111222345668899999999999999887666

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=3.8e-07  Score=80.03  Aligned_cols=116  Identities=17%  Similarity=0.062  Sum_probs=81.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .+...+||-||.|.|+.+..+++. +..+++++||++++++.|++.+....   ...+++++.+|+...     +...++
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-----l~~~~~  161 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-----VRKFKN  161 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-----GGGCSS
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-----HhcCCC
Confidence            345679999999999888877765 45789999999999999998654321   123588899987541     222457


Q ss_pred             ceeEEEeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|++-..-..... ..---.++++.+++.|+|||+++....+.
T Consensus       162 ~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         162 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence            8999997542111000 00013789999999999999999886553

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.41  E-value=5.1e-07  Score=79.61  Aligned_cols=116  Identities=10%  Similarity=-0.002  Sum_probs=79.8

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~---~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .+...+||-||-|.|+.+..+++. +..+++++||++++++.|++-++....   ..+++++.+|+..     .+.....
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~-----~l~~~~~  178 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFE-----FLKNHKN  178 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHH-----HHHHCTT
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHH-----HHHhCCC
Confidence            345679999999999888888775 457999999999999999987643211   2358888888654     2233467


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|++-..-.......--.+.+++.+++.|+|||+++....+.
T Consensus       179 ~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         179 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence            899999854311100111124788999999999999999875443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.40  E-value=1.3e-06  Score=74.12  Aligned_cols=78  Identities=9%  Similarity=0.016  Sum_probs=60.3

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||||||+|..+..++..+ .+++++|+++.+++.+++++....   ++.++++|+...++      +......|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~---n~~i~~~D~l~~~~------~~~~~~~v   89 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHD---NFQVLNKDILQFKF------PKNQSYKI   89 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCC---SEEEECCCGGGCCC------CSSCCCEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhccc---chhhhhhhhhhccc------ccccccee
Confidence            478999999999999888888764 599999999999999999876543   38999999987665      22333345


Q ss_pred             Eeccchhh
Q 021467          110 CCFQHLQM  117 (312)
Q Consensus       110 ~~~~~lh~  117 (312)
                      +++...+-
T Consensus        90 v~NLPYnI   97 (235)
T d1qama_          90 FGNIPYNI   97 (235)
T ss_dssp             EEECCGGG
T ss_pred             eeeehhhh
Confidence            55555544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.3e-07  Score=77.86  Aligned_cols=114  Identities=11%  Similarity=-0.008  Sum_probs=80.0

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---CCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~---~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +...+||-||-|.|+.+..+++. +..+++++||++++++.|++-+...   -...+++.+.+|+..     .+....++
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~-----~l~~~~~~  151 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE-----FMKQNQDA  151 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH-----HHHTCSSC
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH-----HHhcCCCC
Confidence            45579999999999888888765 5679999999999999999876431   112358899998654     12224578


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD  148 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~  148 (312)
                      ||+|++-..-.......---+++++.+++.|+|||+++....+
T Consensus       152 yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         152 FDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             EEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            9999985421111111112367899999999999999987544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=9.3e-07  Score=76.78  Aligned_cols=116  Identities=12%  Similarity=0.059  Sum_probs=82.2

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---CCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~---~~~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .++..+||-||-|.|+.+..+++. +..+++.+||+++.++.|++-+...   -...+++++.+|+...     +...+.
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-----l~~~~~  147 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-----IAKSEN  147 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-----HHTCCS
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-----HhhcCC
Confidence            345689999999999888777765 5679999999999999999876431   1234588999987541     222457


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      +||+|++-..-.......---+++++.+.+.|+|||+++....+.
T Consensus       148 ~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             CCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence            899998753211100000014678999999999999999875543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.33  E-value=6.8e-07  Score=78.25  Aligned_cols=116  Identities=13%  Similarity=0.036  Sum_probs=81.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc---CCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ---RKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~---~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      +...+||=||-|.|+.+..+++. +..+++++||+++.++.|++-+...   -...+++.+.+|+...-.    ...+++
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~----~~~~~~  154 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK----NAAEGS  154 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH----TSCTTC
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh----hccccC
Confidence            45579999999999888888776 5578999999999999999865321   113458889998644111    113468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ||+|++-..=.......---+++++.+++.|+|||+++....+.
T Consensus       155 yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         155 YDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             EEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            99999743211000001113779999999999999999986654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=3.3e-06  Score=68.63  Aligned_cols=118  Identities=17%  Similarity=0.099  Sum_probs=79.0

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      ++++.+||||||++|+.+......  ....++|+|+.+-         ..   ...+.++++|..+........  ....
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~---i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP---IVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC---CTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc---cCCceEeecccccchhhhhhhhhccCc
Confidence            568999999999999888766543  4468999998762         11   123789999987754322211  1357


Q ss_pred             ceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHHHHH
Q 021467          105 QADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK  158 (312)
Q Consensus       105 ~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~~~~  158 (312)
                      ++|+|++-.+....       ..+.+-....+.-+.++|++||.|++-+-+.   ..+...+.+
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence            89999997653211       1222334566777889999999999885544   445555543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.30  E-value=1.2e-07  Score=81.24  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=63.5

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++.+|||||||+|..+..+++.+ .+|++||+++.+++.+++++...   .+++++++|+.+.++      +...++.
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~~---~n~~ii~~D~l~~~~------~~~~~~~   96 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLN---TRVTLIHQDILQFQF------PNKQRYK   96 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTC---SEEEECCSCCTTTTC------CCSSEEE
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhhc---cchhhhhhhhhcccc------ccceeee
Confidence            4578899999999999888887765 59999999999999888777543   248999999988776      4567777


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+++...|-
T Consensus        97 vv~NLPY~I  105 (245)
T d1yuba_          97 IVGNIPYHL  105 (245)
T ss_dssp             EEEECCSSS
T ss_pred             Eeeeeehhh
Confidence            777776654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=6.3e-06  Score=73.90  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      .++.+|||+.||.|.....+++ ...+|+|+|+++.+++.|++..+.++. .++.|+.+|+...-..  .......+|+|
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~--~~~~~~~~d~v  286 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTK--QPWAKNGFDKV  286 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSS--SGGGTTCCSEE
T ss_pred             CCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhh--hhhhhccCceE
Confidence            3678999999999988777654 566999999999999999999887764 3589999998663211  11134679999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      +..-.=--       +...++.+.+ ++|.-++++ ..|...+.+-+.
T Consensus       287 ilDPPR~G-------~~~~~~~l~~-~~~~~ivYV-SCnp~TlaRDl~  325 (358)
T d1uwva2         287 LLDPARAG-------AAGVMQQIIK-LEPIRIVYV-SCNPATLARDSE  325 (358)
T ss_dssp             EECCCTTC-------CHHHHHHHHH-HCCSEEEEE-ESCHHHHHHHHH
T ss_pred             EeCCCCcc-------HHHHHHHHHH-cCCCEEEEE-eCCHHHHHHHHH
Confidence            87543211       1234444444 356554444 567766665554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.26  E-value=1.2e-06  Score=74.04  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~   93 (312)
                      ++-+.||.+.-  ..+||++|++.|+.+..|+..     ..++++|+|+.+.....+...      ..+++++++|..+.
T Consensus        70 ~~~~eli~~~K--Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~------~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          70 AVYHDMLWELR--PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------MENITLHQGDCSDL  141 (232)
T ss_dssp             HHHHHHHHHHC--CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG------CTTEEEEECCSSCS
T ss_pred             HHHHHHHHHhC--CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc------ccceeeeecccccH
Confidence            34455666554  369999999999877655431     346999999987543221111      12489999998876


Q ss_pred             chhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           94 NFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .....+  ....+|+|+.-.. |.   ....... + +....|++||++++.
T Consensus       142 ~~~~~l--~~~~~dlIfID~~-H~---~~~v~~~-~-~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         142 TTFEHL--REMAHPLIFIDNA-HA---NTFNIMK-W-AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             GGGGGG--SSSCSSEEEEESS-CS---SHHHHHH-H-HHHHTCCTTCEEEEC
T ss_pred             HHHHHH--HhcCCCEEEEcCC-cc---hHHHHHH-H-HHhcccCcCCEEEEE
Confidence            554433  2456888877554 43   1222322 3 456899999999986

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.23  E-value=3e-06  Score=74.91  Aligned_cols=121  Identities=17%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             HHHHHHhc--CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           22 TALIKIYS--HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        22 ~~li~~~~--~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      +.+....+  .++.+|||+|||.|+=+..++..  ....+++.|+++.-+...+++.+..+. ..+.....|....+.  
T Consensus       105 S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~--  181 (313)
T d1ixka_         105 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGE--  181 (313)
T ss_dssp             HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGG--
T ss_pred             ccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hcccccccccccccc--
Confidence            34444433  47899999999999866666543  455899999999999999888876553 225555555433222  


Q ss_pred             hhhhcCCceeEEEeccc------hhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           98 QMQEKANQADLVCCFQH------LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~------lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                          ....||.|++-..      ++.-     -.+.       ....++|.+..+.|||||+++-+|..-
T Consensus       182 ----~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         182 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ----ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence                4678999987322      1110     0112       344778899999999999998775543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.15  E-value=3.8e-06  Score=75.98  Aligned_cols=109  Identities=11%  Similarity=0.020  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC--------------ceEEEEEcCCCCCch
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--------------FIAEFFEADPCAENF   95 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~--------------~~~~f~~~D~~~~~~   95 (312)
                      .+.+|||..||+|.....|+.. +..+|+..|+|+.+++.++++.+.++..              ..+...+.|+..   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~---  121 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR---  121 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH---
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh---
Confidence            4679999999999888877664 6679999999999999999998766431              123445555422   


Q ss_pred             hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI  152 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l  152 (312)
                        .+......||+|-+--     |.   ....++..+.+.++.||.+.+|.-|...+
T Consensus       122 --~~~~~~~~fDvIDiDP-----fG---s~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         122 --LMAERHRYFHFIDLDP-----FG---SPMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             --HHHHSTTCEEEEEECC-----SS---CCHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             --hhHhhcCcCCcccCCC-----CC---CcHHHHHHHHHHhccCCEEEEEecCchhh
Confidence              1222346799997653     12   23557888888999999999997776554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.7e-05  Score=64.34  Aligned_cols=111  Identities=12%  Similarity=0.023  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      .+-+..+-.+++ +.+|||+|||.|--...++-. +..+++.+|.+..-+.-.++-....+. .+++.++..+.+..   
T Consensus        54 i~DSl~~~~~~~-~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~---  128 (207)
T d1jsxa_          54 ILDSIVVAPYLQ-GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFP---  128 (207)
T ss_dssp             HHHHHHHGGGCC-SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSC---
T ss_pred             hcchHhhhhhhc-CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhc---
Confidence            344555555554 579999999999544444433 556999999999988887776666543 24888888877643   


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                          ...+||+|++...-.        ...++.-+...+++||.++..-
T Consensus       129 ----~~~~fD~V~sRA~~~--------~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         129 ----SEPPFDGVISRAFAS--------LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----CCSCEEEEECSCSSS--------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----cccccceehhhhhcC--------HHHHHHHHHHhcCCCcEEEEEC
Confidence                246899999866211        5667888899999999999873

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.7e-05  Score=66.43  Aligned_cols=80  Identities=11%  Similarity=0.037  Sum_probs=63.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++..|||||+|+|..+..+++.+ .+++++++++.+++..++++.......+++++.+|+...++        ..++.
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~--------~~~~~   89 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL--------PFFDT   89 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC--------CCCSE
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh--------hhhhh
Confidence            3478899999999999988888765 59999999999999999988765444568999999987654        23456


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+.+-..+.
T Consensus        90 vV~NLPY~I   98 (278)
T d1zq9a1          90 CVANLPYQI   98 (278)
T ss_dssp             EEEECCGGG
T ss_pred             hhcchHHHH
Confidence            776665554

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.12  E-value=6.1e-06  Score=75.91  Aligned_cols=112  Identities=20%  Similarity=0.139  Sum_probs=79.2

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---C-----------CCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCch
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---L-----------IANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENF   95 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~-----------~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~   95 (312)
                      ++.+|+|.+||+|+++....+.   .           ...+.|+|+++.+...|+.+.--.+.. ........|..... 
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-  240 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-  240 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-
Confidence            5789999999999988766442   1           125999999999999998876544321 12345666765432 


Q ss_pred             hhhhhhcCCceeEEEeccchhhhc-------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           96 ETQMQEKANQADLVCCFQHLQMCF-------------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        96 ~~~~~~~~~~fD~V~~~~~lh~~~-------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                            +..+||+|+++-.+..-.             .+....-.++..+.+.|++||++.+.+|++
T Consensus       241 ------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         241 ------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             ------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence                  357899999987653210             111123458999999999999999998875

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=8.2e-06  Score=71.01  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      .++.+|||+|+|.|+=+..++.. ....++++|+++.-+...+++.+..+..  ......+......   . .....||.
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~--~~~~~~~~~~~~~---~-~~~~~fd~  174 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQ---W-CGEQQFDR  174 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHH---H-HTTCCEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc--ceeeeccccccch---h-cccccccE
Confidence            47899999999999977666554 3368999999999999999998876632  2233333222111   0 13468999


Q ss_pred             EEeccc------hhh------hcC------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          109 VCCFQH------LQM------CFE------TEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       109 V~~~~~------lh~------~~~------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      |++-..      +..      ...      -......+|.++.+.|||||+++-+|..-
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            987321      111      000      02335788999999999999999775543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=1.8e-05  Score=67.58  Aligned_cols=84  Identities=7%  Similarity=-0.027  Sum_probs=60.4

Q ss_pred             cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467           29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL  108 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~  108 (312)
                      ..++..|||||||+|..+..++.. ..+|+++|+++.+++..+++....   .++.++.+|+...++.........++ .
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l~~~~~~~~~~~~~~~-~   93 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFGELAEKMGQPL-R   93 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHHHHHHHHTSCE-E
T ss_pred             CCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhhhhcccccccccCCCe-E
Confidence            346889999999999888887765 468999999999999988865433   24899999998876644332223445 4


Q ss_pred             EEeccchhh
Q 021467          109 VCCFQHLQM  117 (312)
Q Consensus       109 V~~~~~lh~  117 (312)
                      |+.+...+.
T Consensus        94 vvgNlPY~I  102 (252)
T d1qyra_          94 VFGNLPYNI  102 (252)
T ss_dssp             EEEECCTTT
T ss_pred             EEecchHHH
Confidence            445554444

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=3.6e-05  Score=72.55  Aligned_cols=114  Identities=16%  Similarity=0.113  Sum_probs=74.4

Q ss_pred             CCCEEEEECCCCCccHHHHHHc---C----------------CCeEEEEeCChHHHHHHHHHHHhcCCCc----eEEEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA---L----------------IANYIGIDVATSGIGEARDTWENQRKNF----IAEFFE   87 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~---~----------------~~~v~giDis~~~i~~a~~r~~~~~~~~----~~~f~~   87 (312)
                      ++.+|+|-+||+|+++......   .                ...++|+|+++.+...|+-..--.+...    ...+..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~  243 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  243 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence            5679999999999988755432   1                1258999999999999987765433211    112333


Q ss_pred             cCCCCCchhhhhhhcCCceeEEEeccchhhhc----------CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467           88 ADPCAENFETQMQEKANQADLVCCFQHLQMCF----------ETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus        88 ~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~----------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|....+.     ....+||+|+++-.+....          .....--.++..+.+.|+|||++.+++|++
T Consensus       244 ~~~l~~d~-----~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         244 GNTLGSDG-----ENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             SCTTSHHH-----HTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             hhhhhhcc-----cccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence            33332211     1346899999976542110          011122358999999999999999998876

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.76  E-value=2.7e-05  Score=65.58  Aligned_cols=119  Identities=17%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHH-HhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTW-ENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~-~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      ++.+..+|+|||||.|+-+...+.. +...+.|+|+--..-+  .... .... ..-+.+...+... .+      ++..
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~~~~~~~-~ni~~~~~~~dv~-~l------~~~~  132 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPIPMSTYG-WNLVRLQSGVDVF-FI------PPER  132 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCCCSTT-GGGEEEECSCCTT-TS------CCCC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCccccccc-cccccchhhhhHH-hc------CCCc
Confidence            4668889999999999887776654 3457888888532100  0000 0000 0113443333211 11      4588


Q ss_pred             eeEEEeccchhhhcCC--HHHHHHHHHHHHhccCCCcEEEEEecC--hhHHHHHH
Q 021467          106 ADLVCCFQHLQMCFET--EERARRLLQNVSSLLKPGGYFLGITPD--SSTIWAKY  156 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~--~~~~~~~l~~i~~~LkpGG~~i~~~p~--~~~l~~~~  156 (312)
                      .|+|+|-.+-+..-..  ......+|.-+.+.|+|||.|++-+.+  ...+++++
T Consensus       133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~l  187 (257)
T d2p41a1         133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKM  187 (257)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHH
T ss_pred             CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHH
Confidence            9999997643211111  122336678888999999999887444  44455444

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00022  Score=61.92  Aligned_cols=115  Identities=10%  Similarity=-0.014  Sum_probs=74.8

Q ss_pred             CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .++.+|||+|||.|+-+..++..  ....++++|+++.-++..+++.+..+.. .+.+...|........   ...+.||
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~---~~~~~fD  168 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD---PRYHEVH  168 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC---GGGTTEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc---cccceee
Confidence            47899999999999966666543  4568999999999999999988876532 3677777765432210   0236799


Q ss_pred             EEEeccc------hhhh------c----CC----HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          108 LVCCFQH------LQMC------F----ET----EERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       108 ~V~~~~~------lh~~------~----~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      .|++-..      +...      .    ..    ......++.++. .|+|||+++-+|..-
T Consensus       169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            9987432      1000      0    00    112244566666 479999988775543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.53  E-value=0.0004  Score=58.32  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             HHHHHHHhcC--CCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467           21 KTALIKIYSH--PYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET   97 (312)
Q Consensus        21 k~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~   97 (312)
                      -+..+..+++  ...+|+|+|+|.|---.-++- .+..+++.+|.+..-+.-.+.-....+.. .+..++..+...... 
T Consensus        58 DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~-  135 (239)
T d1xdza_          58 DSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQR-  135 (239)
T ss_dssp             HHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTC-
T ss_pred             chhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhcccc-
Confidence            3343444543  467999999999954444433 35669999999988777666655544321 266667655331110 


Q ss_pred             hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467           98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS  149 (312)
Q Consensus        98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~  149 (312)
                        .....+||+|++-..-    .    +..++.-+...+++||.+++. .++.
T Consensus       136 --~~~~~~~D~v~sRAva----~----l~~ll~~~~~~l~~~g~~i~~KG~~~  178 (239)
T d1xdza_         136 --KDVRESYDIVTARAVA----R----LSVLSELCLPLVKKNGLFVALKAASA  178 (239)
T ss_dssp             --TTTTTCEEEEEEECCS----C----HHHHHHHHGGGEEEEEEEEEEECC-C
T ss_pred             --ccccccceEEEEhhhh----C----HHHHHHHHhhhcccCCEEEEECCCCh
Confidence              0024689999987632    2    567889999999999999987 4444

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.54  E-value=0.003  Score=52.44  Aligned_cols=55  Identities=24%  Similarity=0.291  Sum_probs=45.2

Q ss_pred             HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHH
Q 021467           20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE   75 (312)
Q Consensus        20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~   75 (312)
                      +...+|..+..++..|||.-||+|..+..... -..+.+|+|++++.++.|++|++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~-~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKK-LGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHH-cCCeEEEEeCCHHHHHHHHHHHc
Confidence            44567777888999999999999965555444 44699999999999999999975

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.39  E-value=0.0025  Score=54.70  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=45.0

Q ss_pred             HHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467           21 KTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus        21 k~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      ...+|..+..++..|||.-||+|..+..... -..+.+|+|++++.++.|++|+..
T Consensus       240 ~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         240 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHCCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHhhhhcccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence            4456677788999999999999966555444 445999999999999999999865

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.38  E-value=0.0077  Score=53.16  Aligned_cols=45  Identities=16%  Similarity=0.168  Sum_probs=36.5

Q ss_pred             cCCceeEEEeccchhhhcC--------------------C---------HHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          102 KANQADLVCCFQHLQMCFE--------------------T---------EERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~--------------------~---------~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      |+++.|++.+..++|+.=.                    .         ..+...+|+.=++-|+|||.++++.
T Consensus       136 P~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         136 PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             CCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            5788999999999998410                    0         2567889999999999999999884

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0039  Score=54.47  Aligned_cols=59  Identities=19%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE   93 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~   93 (312)
                      .+.+|||||.|.|..+..++.. ...+++++|+++..++..++++...+    +..+.+|+...
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~----~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSP----LQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSS----CEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCC----cEEEeCchhhc
Confidence            4678999999999888888765 55699999999999999988875433    78899998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.13  E-value=0.026  Score=43.69  Aligned_cols=101  Identities=11%  Similarity=0.022  Sum_probs=64.3

Q ss_pred             hcCCCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh---hhhh-c
Q 021467           28 YSHPYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET---QMQE-K  102 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~---~~~~-~  102 (312)
                      -.+++.+||-+|||.-+ .+..+++....+++++|.+++-++.|++....      . .+..|....+...   .+.. .
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~------~-~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD------V-TLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS------E-EEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc------E-EEeccccccccchhhhhhhccc
Confidence            35688999999998533 44455555556999999999999888775322      1 2233333222211   1111 2


Q ss_pred             CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ...+|+|+-.-.-          ...+....++|+|||+++..
T Consensus        96 g~g~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          96 GDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             SSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             ccCCceeeecCCC----------hHHHHHHHHHHhcCCceEEE
Confidence            3578988754321          23466667899999999977

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.11  E-value=0.0041  Score=50.19  Aligned_cols=108  Identities=13%  Similarity=-0.041  Sum_probs=68.2

Q ss_pred             hcCCCCEEEEECCCCCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467           28 YSHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~  103 (312)
                      -++++.+||-+|||..+ .+..+++. +..+++++|.+++-++.|++.-        +.. ..+....++...+..  ..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G--------a~~-~~~~~~~~~~~~i~~~t~g   92 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG--------FEI-ADLSLDTPLHEQIAALLGE   92 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT--------CEE-EETTSSSCHHHHHHHHHSS
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc--------ccE-EEeCCCcCHHHHHHHHhCC
Confidence            35689999999999854 44455544 6679999999999998887653        222 223333343322211  24


Q ss_pred             CceeEEEeccc------hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQH------LQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~------lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+++-.-.      .|+... .......++.+.++++|||++...
T Consensus        93 ~g~D~vid~vG~~~~~~~~~~~~-~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          93 PEVDCAVDAVGFEARGHGHEGAK-HEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGG-SBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCcEEEEECccccccCCccccee-ecCcHHHHHHHHHHHhcCCEEEEe
Confidence            57899885432      121111 111245788889999999999877

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.07  E-value=0.0066  Score=50.97  Aligned_cols=58  Identities=24%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467           19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ   77 (312)
Q Consensus        19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~   77 (312)
                      .+...+|..+..++..|||.-||+|..+......+ .+++|+|++++.++.|++|+...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHHHHh
Confidence            34556777888899999999999996665554444 59999999999999999999753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.05  E-value=0.0069  Score=47.79  Aligned_cols=99  Identities=17%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             hcCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467           28 YSHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~  103 (312)
                      -++++.+||=+|||. |..+..+++. +..+|+++|.+++-++.|++.-..       +++  |..+.+..+.+..  ..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~-------~~i--~~~~~~~~~~v~~~t~g   94 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGAT-------DIL--NYKNGHIEDQVMKLTNG   94 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCS-------EEE--CGGGSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCcc-------ccc--cccchhHHHHHHHHhhc
Confidence            356889999999986 5455666665 445899999999888888754211       122  3223333222211  23


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ..+|+|+-.-.-          ...+....++|+|||+++..
T Consensus        95 ~G~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          95 KGVDRVIMAGGG----------SETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             SCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             cCcceEEEccCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            569998765431          12456667899999999976

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.011  Score=46.33  Aligned_cols=97  Identities=14%  Similarity=0.087  Sum_probs=64.0

Q ss_pred             cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467           29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~  104 (312)
                      ++++.+||-.|++  -|..+..+++....++++++-+++.++.+++.-..       ..  .|..+.++.+.+.  ....
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~-------~v--i~~~~~~~~~~i~~~t~~~   96 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH-------EV--FNHREVNYIDKIKKYVGEK   96 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-------EE--EETTSTTHHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcc-------cc--cccccccHHHHhhhhhccC
Confidence            4588999999973  34455666666666999999998887777653211       12  2444444444332  1356


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+....           ...+.+..++|+|||+++..
T Consensus        97 g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          97 GIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence            7999986542           12467777899999999875

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.012  Score=46.37  Aligned_cols=98  Identities=19%  Similarity=0.117  Sum_probs=61.5

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh---hh--h
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ---MQ--E  101 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~---~~--~  101 (312)
                      .+++.+||-+|||. |..+..+++. +..+|+++|.+++-++.|++.-..       ..+  |..+.+..+.   +.  .
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~-------~vi--~~~~~~~~~~~~~i~~~~   96 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD-------LTL--NRRETSVEERRKAIMDIT   96 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS-------EEE--ETTTSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccce-------EEE--eccccchHHHHHHHHHhh
Confidence            34789999999974 4455566655 445899999999999888664211       122  3333332211   11  1


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ....+|+|+..-.-          ...++...++|+|||+++..
T Consensus        97 ~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          97 HGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence            23469998754321          22467777899999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.76  E-value=0.0031  Score=49.41  Aligned_cols=100  Identities=14%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             HhcCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467           27 IYSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ  105 (312)
Q Consensus        27 ~~~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~  105 (312)
                      .-++++.+||-+|+|. |..+..+++....+++++|.+++.++.|++--..       .++... ......   ....+.
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i~~~-~~~~~~---~~~~~~   91 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYIATL-EEGDWG---EKYFDT   91 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEEEGG-GTSCHH---HHSCSC
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEeecc-chHHHH---Hhhhcc
Confidence            3456899999999984 4445566655456899999999999888764311       122211 011111   113467


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+..-.-..        ...+....+.|+|||+++..
T Consensus        92 ~d~vi~~~~~~~--------~~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          92 FDLIVVCASSLT--------DIDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             EEEEEECCSCST--------TCCTTTGGGGEEEEEEEEEC
T ss_pred             cceEEEEecCCc--------cchHHHHHHHhhccceEEEe
Confidence            998876432211        01134567899999999876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.016  Score=45.12  Aligned_cols=99  Identities=11%  Similarity=0.026  Sum_probs=63.1

Q ss_pred             hcCCCCEEEEECCCCCccHH-HHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh---hhh-h
Q 021467           28 YSHPYVTVCDLYCGAGVDVD-KWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET---QMQ-E  101 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~-~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~---~~~-~  101 (312)
                      -+.++.+||=+|||..+.+. .+++. +..+|+++|.++.-++.|++.-..       ..+..+  ..+...   .+. .
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~-------~~~~~~--~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD-------LVLQIS--KESPQEIARKVEGQ   93 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS-------EEEECS--SCCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc-------cccccc--cccccccccccccc
Confidence            35688999999998766443 44444 556899999999999888764221       122221  122211   111 1


Q ss_pred             cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ....+|+|+..-.-          ...++...+++++||++++.
T Consensus        94 ~g~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          94 LGCKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HTSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence            24579998765432          23577778899999999877

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.57  E-value=0.2  Score=42.61  Aligned_cols=111  Identities=11%  Similarity=0.005  Sum_probs=75.2

Q ss_pred             CEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhhhc---CCc
Q 021467           33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK---ANQ  105 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~~~~---~~~  105 (312)
                      ..|+.||||-  |+..+...  ....++=+|. +++++.-++.+...+.  ......+..|+... ....+...   ...
T Consensus        91 ~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          91 RQFVILASGL--DSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPSA  166 (297)
T ss_dssp             CEEEEETCTT--CCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHHHHHHTTCCTTS
T ss_pred             CeEEEeCccc--CChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccch-HHHHHHhcCCCCCC
Confidence            4677799987  56655433  3346666774 6777766666665432  33467888888753 33333221   133


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      --++++-.++.|  .+.+....+++.+.+...||+.+++...+.
T Consensus       167 ptl~i~EGvl~Y--L~~~~~~~ll~~i~~~~~~GS~l~~d~~~~  208 (297)
T d2uyoa1         167 RTAWLAEGLLMY--LPATAQDGLFTEIGGLSAVGSRIAVETSPL  208 (297)
T ss_dssp             CEEEEECSCGGG--SCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             CEEEEEcccccc--CCHHHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            456777777888  789999999999999999999999885443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.46  E-value=0.032  Score=43.05  Aligned_cols=98  Identities=12%  Similarity=0.059  Sum_probs=61.0

Q ss_pred             hcCCCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCc
Q 021467           28 YSHPYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~  105 (312)
                      -.+++.+||=+|||.=+ .+..+++....+++++|.+++-++.+++.-..       .++  |..+.+..+.+. ...+.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~-------~~i--~~~~~~~~~~~~~~~~g~   94 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS-------LTV--NARQEDPVEAIQRDIGGA   94 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS-------EEE--ETTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc-------ccc--cccchhHHHHHHHhhcCC
Confidence            35688999999998644 33455555557999999999998887654211       222  233333322221 12344


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|.|.+...           ...+....+.|+|||+++..
T Consensus        95 ~~~i~~~~~-----------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          95 HGVLVTAVS-----------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             EEEEECCSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             ccccccccc-----------chHHHHHHHHhcCCcEEEEE
Confidence            555554442           23466777899999999876

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=95.33  E-value=0.0079  Score=50.38  Aligned_cols=111  Identities=10%  Similarity=0.044  Sum_probs=67.0

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcCC-----CceEEEEEcCCCCCchhhhhhhcCC
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRK-----NFIAEFFEADPCAENFETQMQEKAN  104 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~---~r~~~~~~-----~~~~~f~~~D~~~~~~~~~~~~~~~  104 (312)
                      .+|||+-||.|.|+..++..+. +|++++-++......+   +|+.....     ..+++++++|..+.     +.....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~-----L~~~~~  163 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----LTDITP  163 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH-----STTCSS
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH-----HhccCC
Confidence            4899999999999999887764 8999999997654443   44433211     12489999986441     111346


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ  157 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~  157 (312)
                      .||+|..--.+..- ........-++-++.++.+       .++.+.+++..+
T Consensus       164 ~~DvIYlDPMFp~~-~Ksa~~kk~m~~l~~l~~~-------d~d~~~ll~~a~  208 (250)
T d2oyra1         164 RPQVVYLDPMFPHK-QKSALVKKEMRVFQSLVGP-------DLDADGLLEPAR  208 (250)
T ss_dssp             CCSEEEECCCCCCC-CC-----HHHHHHHHHSCC-------CTTGGGGHHHHH
T ss_pred             CCCEEEECCCCccc-cccccchhHHHHHHhhccC-------CCCHHHHHHHHH
Confidence            79999987733220 1112233344444444432       456666665544

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.26  E-value=0.059  Score=41.30  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=62.1

Q ss_pred             hcCCCCEEEEECCCCCccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           28 YSHPYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~G~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      -.+++.+||=.|||.-+.+. .+++....+++++|.+++-++.+++.-        +.. ..|..+.++...+.. ..+.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G--------a~~-~~~~~~~~~~~~~~~~~~~~   94 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG--------ADL-VVNPLKEDAAKFMKEKVGGV   94 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT--------CSE-EECTTTSCHHHHHHHHHSSE
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC--------cce-ecccccchhhhhcccccCCC
Confidence            46689999999998876443 334445568999999999888876632        111 223333343332222 2345


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|.+...           ...+....++|+|||+++..
T Consensus        95 ~~~v~~~~~-----------~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          95 HAAVVTAVS-----------KPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EEEEESSCC-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeecCC-----------HHHHHHHHHHhccCCceEec
Confidence            555554331           23467778899999999876

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.20  E-value=0.026  Score=48.05  Aligned_cols=103  Identities=12%  Similarity=0.006  Sum_probs=67.7

Q ss_pred             CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467           33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (312)
Q Consensus        33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~  112 (312)
                      ++||||-||-||...-+..++...+.++|+++.+.+.-+.++.       ...+.+|+.+.+..     .-...|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~-----~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSD-----EFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGG-----GSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHh-----HcccccEEeec
Confidence            4799999999998887777788777799999988776665542       34678999886542     12468999986


Q ss_pred             cchhhh--------cCCHH-HHHHHHHHHHhccCCCcEEEEEec
Q 021467          113 QHLQMC--------FETEE-RARRLLQNVSSLLKPGGYFLGITP  147 (312)
Q Consensus       113 ~~lh~~--------~~~~~-~~~~~l~~i~~~LkpGG~~i~~~p  147 (312)
                      +..+-.        ..+.. .+---+-.+.+.++|.-.++=-++
T Consensus        69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~  112 (324)
T d1dcta_          69 PPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (324)
T ss_dssp             CCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence            654321        22221 222223346677899755544444

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.08  E-value=0.021  Score=49.02  Aligned_cols=72  Identities=14%  Similarity=0.038  Sum_probs=54.3

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      .+.+||||-||-|+...-+..++..-+.++|+++.+++.-+.++...        .++|+.+....     .-..+|+++
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~-----~~~~~Dll~   76 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK-----TIPDHDILC   76 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG-----GSCCCSEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh-----hcceeeeee
Confidence            56899999999999888888888867778999999998887776432        25777664432     124689998


Q ss_pred             eccch
Q 021467          111 CFQHL  115 (312)
Q Consensus       111 ~~~~l  115 (312)
                      ..+..
T Consensus        77 ggpPC   81 (327)
T d2c7pa1          77 AGFPC   81 (327)
T ss_dssp             EECCC
T ss_pred             ccccc
Confidence            86643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.77  E-value=0.079  Score=41.15  Aligned_cols=98  Identities=10%  Similarity=-0.002  Sum_probs=63.4

Q ss_pred             cCCCCEEEEECCCCCccH-HHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~  105 (312)
                      .+++.+||=+|||.-+.+ ..+++. +...++.+|.++.-++.|++.-.       .+++..  .+.+..+.+. ..++.
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i~~--~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVINS--KTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEEET--TTSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEEeC--CCcCHHHHHHHHcCCC
Confidence            568999999999865433 344433 66788999999998888876421       223332  2333333222 13468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-.-.          ....++...++++|+|+++..
T Consensus        97 ~D~vid~~G----------~~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          97 VNFALESTG----------SPEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             EEEEEECSC----------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             CcEEEEcCC----------cHHHHHHHHhcccCceEEEEE
Confidence            999875432          123566778899999999876

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.74  E-value=0.031  Score=46.55  Aligned_cols=89  Identities=12%  Similarity=0.037  Sum_probs=60.1

Q ss_pred             eEEEEeCChHHHHHHH---HHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcC-----CHHHHHH
Q 021467           56 NYIGIDVATSGIGEAR---DTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFE-----TEERARR  127 (312)
Q Consensus        56 ~v~giDis~~~i~~a~---~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~-----~~~~~~~  127 (312)
                      .++|.|+++.+++.|+   ++....+....+++.+.|+++........ .....++|+|+-..-.=+.     ..+....
T Consensus       116 ~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~-~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~  194 (249)
T d1o9ga_         116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAG  194 (249)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhcc-CCCCCCEEEeCCCccccccccccchHHHHHH
Confidence            4679999999999884   45655665666899999987644322221 2466789999765322221     2456788


Q ss_pred             HHHHHHhccCCCcEEEEE
Q 021467          128 LLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       128 ~l~~i~~~LkpGG~~i~~  145 (312)
                      ++..+.+.+.....++++
T Consensus       195 ~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         195 LLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHccCCCCcEEEEe
Confidence            888899999655555554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.25  E-value=0.1  Score=40.08  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=64.4

Q ss_pred             EEEEECCCC-CccHHHHH-HcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467           34 TVCDLYCGA-GVDVDKWE-TALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC  110 (312)
Q Consensus        34 ~VLDlGCG~-G~~l~~~~-~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~  110 (312)
                      +|+=+|||. |+.+.+-+ +.+. .+++|+|.+++.++.|++....       .-...+...  .      .....|+|+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-------~~~~~~~~~--~------~~~~~dlIi   67 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-------DEGTTSIAK--V------EDFSPDFVM   67 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-------SEEESCGGG--G------GGTCCSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-------hhhhhhhhh--h------hcccccccc
Confidence            578899997 54444333 3443 5899999999999988776321       111111111  1      235689988


Q ss_pred             eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467          111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK  158 (312)
Q Consensus       111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~  158 (312)
                      ..-.       .+.....+.++...++++..++-+..-...+.+.+.+
T Consensus        68 la~p-------~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~  108 (171)
T d2g5ca2          68 LSSP-------VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN  108 (171)
T ss_dssp             ECSC-------HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH
T ss_pred             ccCC-------chhhhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence            5553       4447888999999999987776554444455554443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.24  E-value=0.08  Score=41.32  Aligned_cols=100  Identities=13%  Similarity=0.072  Sum_probs=62.3

Q ss_pred             cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCc
Q 021467           29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~  105 (312)
                      ++++.+||=+|||. |..+..+++. +...++.+|++++-++.|++--..       ..+...-.+....... ....+.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT-------DCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC-------cccCCccchhhhhhhHhhhhcCC
Confidence            46889999999997 4444555554 556899999999988777764321       1222111111111111 113468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +|+|+-.-.          ....+....+.|++| |.+++.
T Consensus        99 ~d~vie~~G----------~~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          99 VDYSLDCAG----------TAQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             BSEEEESSC----------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEecc----------cchHHHHHHHHhhcCCeEEEec
Confidence            999875432          234577778899996 999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.83  E-value=0.084  Score=40.85  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=63.7

Q ss_pred             cCCCCEEEEECCCCCccH-HHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~  105 (312)
                      .+++.+||=+|||..+.+ ..+++. +...++++|.+++-++.+++...       ..++.  ..+.+....... ....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-------~~~i~--~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-------DHVVD--ARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-------SEEEE--TTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-------ceeec--CcccHHHHHHHhhCCCC
Confidence            568899999999876544 344443 66789999999988887776432       12332  223333222221 2356


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+..-.-          ...++...+.|++||+++..
T Consensus       101 ~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2         101 VNVAMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             EEEEEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             ceEEEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            9998765532          22467778899999999976

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.27  Score=40.57  Aligned_cols=83  Identities=8%  Similarity=-0.039  Sum_probs=58.5

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~~~  103 (312)
                      ++..||=.|++.|-   .+..+++.+ .+|+++|.+++.++.+.+..+..+...++.++++|+.+..-.    +......
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G-~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46789999998872   233444445 599999999999999888887765445688999999885421    1122234


Q ss_pred             CceeEEEeccc
Q 021467          104 NQADLVCCFQH  114 (312)
Q Consensus       104 ~~fD~V~~~~~  114 (312)
                      +..|+++.+..
T Consensus        88 g~iD~lVnnAg   98 (257)
T d1xg5a_          88 SGVDICINNAG   98 (257)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEeccc
Confidence            78998887654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.57  E-value=0.18  Score=37.05  Aligned_cols=100  Identities=12%  Similarity=0.020  Sum_probs=61.1

Q ss_pred             CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ++|+=+|+|. |..+.+.+......|+.+|.+++.++.++++.   +    ..++.+|..+........  -...|.+++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~----~~vi~Gd~~~~~~l~~~~--i~~a~~vv~   71 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLEDAG--IEDADMYIA   71 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHHTT--TTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---h----hhhccCcccchhhhhhcC--hhhhhhhcc
Confidence            3677788864 33333333444568999999999988776553   2    568899998866544332  356888776


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS  149 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~  149 (312)
                      ..      .+.+ ...+...+.+.+.+.- .+..+.+.
T Consensus        72 ~t------~~d~-~N~~~~~~~k~~~~~~-iI~~~~~~  101 (132)
T d1lssa_          72 VT------GKEE-VNLMSSLLAKSYGINK-TIARISEI  101 (132)
T ss_dssp             CC------SCHH-HHHHHHHHHHHTTCCC-EEEECSST
T ss_pred             cC------CcHH-HHHHHHHHHHHcCCce-EEEEecCH
Confidence            43      2222 3334455666777774 34444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.47  E-value=0.16  Score=38.69  Aligned_cols=99  Identities=12%  Similarity=0.045  Sum_probs=59.6

Q ss_pred             CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      ++|.=||+|. |+.+.+.+.....+|++.|.+++.++.|++...       +.-...+. +         .-...|+|+.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~-------~~~~~~~~-~---------~~~~~DiIil   63 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-------VDEAGQDL-S---------LLQTAKIIFL   63 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-------CSEEESCG-G---------GGTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc-------cceeeeec-c---------cccccccccc
Confidence            3677789985 333333333344599999999998887765421       10111111 0         1256898875


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK  155 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~  155 (312)
                      .-       .....+..++++...|+++-+++-+..-...+...
T Consensus        64 av-------p~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~  100 (165)
T d2f1ka2          64 CT-------PIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEP  100 (165)
T ss_dssp             CS-------CHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHH
T ss_pred             cC-------cHhhhhhhhhhhhhhcccccceeeccccchHHHHH
Confidence            33       24558889999999999988776553333333333

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.14  Score=39.63  Aligned_cols=97  Identities=14%  Similarity=0.111  Sum_probs=65.1

Q ss_pred             cCCCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      ++++.+||=.|+|.|  ..+..+++....+|+++|.|++-.+.+++.-..       +.  .|..+.++.+.+..  ...
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~-------~v--i~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-------QV--INYREEDLVERLKEITGGK   96 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-------EE--EETTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe-------EE--EECCCCCHHHHHHHHhCCC
Confidence            458899999977753  355566666667999999999998888754211       12  24444555443322  246


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+..-.-.           .+......|+++|+++..
T Consensus        97 g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          97 KVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             CEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             CeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence            799988655322           356677899999998764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.043  Score=47.07  Aligned_cols=76  Identities=17%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             CCEEEEECCCCCccHHHHHHcCCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           32 YVTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        32 ~~~VLDlGCG~G~~l~~~~~~~~~--~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      ..+|+||-||.|+...-+..++..  -+.++|+++.+++..+.++..      ..+++.|+.+..... +  +...+|++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~------~~~~~~di~~~~~~~-~--~~~~~Dll   72 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEE-F--DRLSFDMI   72 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHH-H--HHHCCSEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC------CCcccCchhhCCHhH-c--CCCCccEE
Confidence            468999999999987777666653  367999999888877766533      346677876654322 1  12368999


Q ss_pred             Eeccchh
Q 021467          110 CCFQHLQ  116 (312)
Q Consensus       110 ~~~~~lh  116 (312)
                      +..+..+
T Consensus        73 ~ggpPCq   79 (343)
T d1g55a_          73 LMSPPCQ   79 (343)
T ss_dssp             EECCC--
T ss_pred             Eeecccc
Confidence            8876643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.85  E-value=0.19  Score=38.98  Aligned_cols=47  Identities=17%  Similarity=-0.017  Sum_probs=36.3

Q ss_pred             cCCCCEEEEECCCCCccHH-HHHHc-CCCeEEEEeCChHHHHHHHHHHH
Q 021467           29 SHPYVTVCDLYCGAGVDVD-KWETA-LIANYIGIDVATSGIGEARDTWE   75 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~-~~~~~-~~~~v~giDis~~~i~~a~~r~~   75 (312)
                      ++++.+||=+|||..+.+. ..++. +..+|+++|++++-++.|++.-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            5689999999998765433 33333 56799999999999999988754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.64  E-value=0.22  Score=38.51  Aligned_cols=100  Identities=11%  Similarity=-0.018  Sum_probs=58.5

Q ss_pred             cCCCCEEEEECCCCCccHH-HHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDVD-KWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~-~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~  105 (312)
                      ++++.+||=+|||..+.+. .+++. +..+|+++|++++-++.|++.-..       .++...-.+....... ....+.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-------~~i~~~~~d~~~~~~~~~~~~~G   97 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECLNPKDYDKPIYEVICEKTNGG   97 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-------EEEcCCCchhHHHHHHHHhcCCC
Confidence            5689999999998765443 33333 667999999999999888764321       1221111111111111 112457


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCC-CcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp-GG~~i~~  145 (312)
                      +|+|+-.-.-          ...+.+....+++ +|.+++.
T Consensus        98 ~d~vid~~g~----------~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          98 VDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CcEEEEcCCC----------chHHHHHHHHHHHhcCceEEE
Confidence            8888754321          2345555555654 6888765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.23  E-value=0.18  Score=38.68  Aligned_cols=98  Identities=15%  Similarity=0.152  Sum_probs=61.0

Q ss_pred             cCCCCEEEEECCC-CCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467           29 SHPYVTVCDLYCG-AGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA  103 (312)
Q Consensus        29 ~~~~~~VLDlGCG-~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~  103 (312)
                      ..++.+||=+||| ..+ .+..+++. +...|+++|.+++-++.+++.-..       ..+.  ....++.+....  ..
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-------~~i~--~~~~~~~~~~~~~~~~   95 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-------YVIN--ASMQDPLAEIRRITES   95 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-------EEEE--TTTSCHHHHHHHHTTT
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-------eeec--cCCcCHHHHHHHHhhc
Confidence            5688999999974 322 23334443 667999999999888888764211       2222  223333222211  24


Q ss_pred             CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +.+|+|+..-.-          ...++...++|+|||+++..
T Consensus        96 ~~~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          96 KGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             ccchhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence            579998865431          23456667899999999866

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.71  E-value=0.43  Score=36.87  Aligned_cols=97  Identities=13%  Similarity=-0.039  Sum_probs=62.6

Q ss_pred             cCCCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h-hhcCC
Q 021467           29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M-QEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~-~~~~~  104 (312)
                      ++++.+||=.|+|.|  ..+..+++....+|++++-+++.++.+++.-..       ..+.  -.+.+..+. + .....
T Consensus        27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~-------~vi~--~~~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFD-------AAFN--YKTVNSLEEALKKASPD   97 (182)
T ss_dssp             CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-------EEEE--TTSCSCHHHHHHHHCTT
T ss_pred             CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhh-------hhcc--cccccHHHHHHHHhhcC
Confidence            358899998888664  345566666667999999998887766665321       1222  222222221 1 11346


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+-.-.           ...++...++|+|||.++..
T Consensus        98 Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          98 GYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             CCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            7999986542           23477888999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.59  E-value=0.26  Score=36.02  Aligned_cols=100  Identities=10%  Similarity=-0.033  Sum_probs=57.7

Q ss_pred             EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467           34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF  112 (312)
Q Consensus        34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~  112 (312)
                      +++=+|+|. |..+...+......|+.+|.+++.++.++..    +    ...+.+|+.+........  -...|.|++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~----~~~~~gd~~~~~~l~~a~--i~~a~~vi~~   71 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----A----THAVIANATEENELLSLG--IRNFEYVIVA   71 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----C----SEEEECCTTCTTHHHHHT--GGGCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----C----CcceeeecccchhhhccC--CccccEEEEE
Confidence            345567774 4444444444556899999999988876432    2    346789998876644332  2457876654


Q ss_pred             cchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       113 ~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ..      +......+.. ..+.+.+...++...-+..
T Consensus        72 ~~------~~~~~~~~~~-~~~~~~~~~~iiar~~~~~  102 (134)
T d2hmva1          72 IG------ANIQASTLTT-LLLKELDIPNIWVKAQNYY  102 (134)
T ss_dssp             CC------SCHHHHHHHH-HHHHHTTCSEEEEECCSHH
T ss_pred             cC------chHHhHHHHH-HHHHHcCCCcEEeecccHh
Confidence            42      1122223333 3334446667666655543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.46  E-value=0.3  Score=37.57  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=58.6

Q ss_pred             cCCCCEEEEECCCCCccH-HHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhh-hhcCC
Q 021467           29 SHPYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQM-QEKAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l-~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~-~D~~~~~~~~~~-~~~~~  104 (312)
                      ++++.+||=+|+|.++.+ ..+++. +..+|+++|.+++-++.+++.-..       ..+. .+.. ....... ....+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~-------~~i~~~~~~-~~~~~~~~~~~~~   97 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT-------ECVNPQDYK-KPIQEVLTEMSNG   97 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS-------EEECGGGCS-SCHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe-------eEEecCCch-hHHHHHHHHHhcC
Confidence            568999999999865433 333333 667999999999988888766422       1111 1111 1221111 11346


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      .+|+|+-......          .+......+++| |.+++.
T Consensus        98 G~D~vid~~G~~~----------~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          98 GVDFSFEVIGRLD----------TMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CBSEEEECSCCHH----------HHHHHHHHBCTTTCEEEEC
T ss_pred             CCCEEEecCCchh----------HHHHHHHHHhcCCcceEEe
Confidence            8999887654332          345555677776 555544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.03  E-value=0.15  Score=39.46  Aligned_cols=97  Identities=18%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             cCCCCEEEEECC-C-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467           29 SHPYVTVCDLYC-G-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN  104 (312)
Q Consensus        29 ~~~~~~VLDlGC-G-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~  104 (312)
                      +.++.+||=.|. | .|..+..+++....++++++-+++-.+.+++.    +    +.. ..|..+.++.+.+..  ...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----G----a~~-vi~~~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----G----VEY-VGDSRSVDFADEILELTDGY   93 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----C----CSE-EEETTCSTHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----c----ccc-cccCCccCHHHHHHHHhCCC
Confidence            357889998873 3 34455666666556899999888777766543    2    111 123334444333322  246


Q ss_pred             ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      .+|+|+..-.-           ..++.+.++|+++|+++..
T Consensus        94 g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          94 GVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             CEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            79999876531           2355667899999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.17  Score=38.78  Aligned_cols=96  Identities=17%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             hcCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           28 YSHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        28 ~~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      -++++.+||=+|||. |..+..+++....+++++|.+++-++.+++.-..       .++  |..+...   .....+.+
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad-------~~i--~~~~~~~---~~~~~~~~   94 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-------EVV--NSRNADE---MAAHLKSF   94 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-------EEE--ETTCHHH---HHTTTTCE
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCc-------EEE--ECchhhH---HHHhcCCC
Confidence            356899999999975 3355566666556888999999888777654221       122  2222111   11123679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+..-.--          ..+....+.|++||+++..
T Consensus        95 D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          95 DFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             EEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             ceeeeeeecc----------hhHHHHHHHHhcCCEEEEe
Confidence            9887544211          1255667899999999977

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.27  E-value=0.55  Score=35.76  Aligned_cols=100  Identities=10%  Similarity=0.013  Sum_probs=60.6

Q ss_pred             cCCCCEEEEECCCCCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCc
Q 021467           29 SHPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~  105 (312)
                      ++++.+||=.|||..+ .+..+++. +...|+++|.+++-++.+++--..       ..+..+-........+. ...+.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i~~~~~~~~~~~~~~~~~~~g   98 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECINPQDFSKPIQEVLIEMTDGG   98 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEEeCCchhhHHHHHHHHHcCCC
Confidence            5689999999998433 22333333 667999999999988887764321       12222111122222211 12467


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +|+|+-.-.-          ...++....++++||.++..
T Consensus        99 ~D~vid~~G~----------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          99 VDYSFECIGN----------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred             CcEeeecCCC----------HHHHHHHHHhhcCCceeEEE
Confidence            9998865432          23567778899998877654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.20  E-value=0.11  Score=40.13  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=57.3

Q ss_pred             cCCCCEEEEECC-CC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467           29 SHPYVTVCDLYC-GA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA  106 (312)
Q Consensus        29 ~~~~~~VLDlGC-G~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f  106 (312)
                      ++++.+||=.|. |. |..+..+++....++++++.+++-++.+++.-..       ..+  |..+  ...... ....+
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~-------~~i--~~~~--~~~~~~-~~~g~   92 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE-------EAA--TYAE--VPERAK-AWGGL   92 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS-------EEE--EGGG--HHHHHH-HTTSE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc-------eee--ehhh--hhhhhh-ccccc
Confidence            568999999884 43 3455566666666999999998877777653211       111  1111  111111 24679


Q ss_pred             eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+|+-... .           .+....++|+|||+++..
T Consensus        93 D~v~d~~G-~-----------~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          93 DLVLEVRG-K-----------EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEECSC-T-----------THHHHHTTEEEEEEEEEC
T ss_pred             cccccccc-h-----------hHHHHHHHHhcCCcEEEE
Confidence            99875321 1           145567899999999865

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=2.3  Score=36.08  Aligned_cols=111  Identities=13%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHH-HhcC--------------------CCceEEEEEcC
Q 021467           31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTW-ENQR--------------------KNFIAEFFEAD   89 (312)
Q Consensus        31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~-~~~~--------------------~~~~~~f~~~D   89 (312)
                      +...|+-||||.=.....+.... ..+.-+|++-..+-..+.+. ....                    ...+...+.+|
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~-~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D  174 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  174 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCccchHHHHhhccC-CCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence            55689999999853333332222 24555555533333333322 1100                    01236778889


Q ss_pred             CCCCchhhhhhhc---CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467           90 PCAENFETQMQEK---ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus        90 ~~~~~~~~~~~~~---~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      +.+......+...   ...--++++-.++.|  .+++...++++.+.+....+ .|+.-
T Consensus       175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Y--l~~~~~~~li~~~~~~f~~~-~~i~Y  230 (328)
T d1rjda_         175 LNDITETTRLLDVCTKREIPTIVISECLLCY--MHNNESQLLINTIMSKFSHG-LWISY  230 (328)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGG--SCHHHHHHHHHHHHHHCSSE-EEEEE
T ss_pred             CCCcHhhHHHHHccCCCCCCeEEEEeeehhc--CCHHHHHHHHHHHHHhCCCc-eEEEe
Confidence            8875433322211   223347888888998  67899999999999988665 44443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.04  E-value=0.83  Score=34.71  Aligned_cols=100  Identities=14%  Similarity=0.038  Sum_probs=57.3

Q ss_pred             cCCCCEEEEECCCCCccHHH-HHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-hhhcCCc
Q 021467           29 SHPYVTVCDLYCGAGVDVDK-WET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G~~l~~-~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~~~~~~~  105 (312)
                      ++++.+||=+|||.++.+.. .++ .+...|+++|.+++-++.|++.-..       +++..+-.+...... .....+.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd-------~~in~~~~~~~~~~~~~~~~~~G   98 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT-------DFVNPNDHSEPISQVLSKMTNGG   98 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC-------EEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc-------EEEcCCCcchhHHHHHHhhccCC
Confidence            56899999999998664443 222 3667899999999988887764321       222211111111111 1113467


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI  145 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~  145 (312)
                      +|+|+-.-.-          ...+......+++| |.+++.
T Consensus        99 ~d~vid~~G~----------~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          99 VDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             BSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             cceeeeecCC----------HHHHHHHHHHhhCCCcceeEE
Confidence            9998755432          22345555666665 555444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.94  E-value=1.2  Score=36.49  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=71.6

Q ss_pred             CCEE-EEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhhcC
Q 021467           32 YVTV-CDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA  103 (312)
Q Consensus        32 ~~~V-LDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~~~  103 (312)
                      +.+| |==|++.|-   .+..+++.+..+|+.++.+++.++.+.+.++..+  .++.++.+|+.+..-.    +.+....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4566 444666552   2234444456799999999999999888876653  2478899999875421    2222234


Q ss_pred             CceeEEEeccchhhh--cCC--HHHH-----------HHHHHHHHhccCCCcEEEEEe
Q 021467          104 NQADLVCCFQHLQMC--FET--EERA-----------RRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       104 ~~fD~V~~~~~lh~~--~~~--~~~~-----------~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      ++.|+++.+.++...  +.+  .++.           -.+.+.+...|+++|.++.+.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            789999988764221  111  1222           234566778889999977663

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=1.6  Score=35.27  Aligned_cols=82  Identities=10%  Similarity=0.071  Sum_probs=57.3

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .|..+|=-|++.|-   .+..+++.+ .+|+.+|.+++.++...+.+...+  .++..+.+|+.+..-..    ......
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G-~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            46788888998872   333444444 599999999999998888887643  35888999998854211    122245


Q ss_pred             CceeEEEeccch
Q 021467          104 NQADLVCCFQHL  115 (312)
Q Consensus       104 ~~fD~V~~~~~l  115 (312)
                      +..|+++.+...
T Consensus        83 g~idilinnag~   94 (244)
T d1yb1a_          83 GDVSILVNNAGV   94 (244)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCceeEeeccc
Confidence            789998876654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=87.58  E-value=0.84  Score=32.95  Aligned_cols=98  Identities=8%  Similarity=-0.091  Sum_probs=59.3

Q ss_pred             EEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467           35 VCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ  113 (312)
Q Consensus        35 VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~  113 (312)
                      |+=+|+  |.....+.+. ....++.+|.+++.++.++..    +    +.++.+|..+.......  .-...+.+++..
T Consensus         3 ivI~G~--g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~----~----~~~i~Gd~~~~~~L~~a--~i~~A~~vi~~~   70 (129)
T d2fy8a1           3 VVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLRS----G----ANFVHGDPTRVSDLEKA--NVRGARAVIVNL   70 (129)
T ss_dssp             EEEESC--CHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT----T----CEEEESCTTSHHHHHHT--TCTTCSEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc----C----ccccccccCCHHHHHHh--hhhcCcEEEEec
Confidence            444454  5455554443 334688999999987766433    2    67889999886543322  235677776543


Q ss_pred             chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467          114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST  151 (312)
Q Consensus       114 ~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~  151 (312)
                            .+.. ....+-...+.+.|...++..+-+...
T Consensus        71 ------~~d~-~n~~~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 ------ESDS-ETIHCILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             ------SSHH-HHHHHHHHHHHHCSSSCEEEECSSGGG
T ss_pred             ------cchh-hhHHHHHHHHHHCCCceEEEEEcCHHH
Confidence                  2222 233344456678898888887666643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.40  E-value=1.6  Score=35.63  Aligned_cols=83  Identities=14%  Similarity=0.023  Sum_probs=56.6

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .+.++|=-|++.|-   .+..+++.+ .+|+.+|.+++.++.+.+.........++..+.+|+.+..-..    .....-
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~G-a~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            35678888988772   334444445 5999999999999988877765443445888999998754221    111234


Q ss_pred             CceeEEEeccc
Q 021467          104 NQADLVCCFQH  114 (312)
Q Consensus       104 ~~fD~V~~~~~  114 (312)
                      ++.|+++.+..
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            78999887655

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=1.8  Score=32.03  Aligned_cols=105  Identities=6%  Similarity=-0.066  Sum_probs=62.3

Q ss_pred             CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467           33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC  111 (312)
Q Consensus        33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~  111 (312)
                      .+|+=+|+|. |..+.+.+......++.+|.+++......+.....+    +.++.+|..+.......  .-...|.|++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a--~i~~a~~vi~   77 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKA--GIDRCRAILA   77 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHH--TTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHh--ccccCCEEEE
Confidence            4677777764 222333333345589999999876554444443333    78899999886554333  2356888775


Q ss_pred             ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467          112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS  150 (312)
Q Consensus       112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~  150 (312)
                      ..      .+.. ....+....+.+.|...++...-+..
T Consensus        78 ~~------~~d~-~n~~~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          78 LS------DNDA-DNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             CS------SCHH-HHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             cc------ccHH-HHHHHHHHHHHhCCCCceEEEEcCHH
Confidence            44      2222 22333345566778877777765543

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=86.61  E-value=0.57  Score=40.65  Aligned_cols=59  Identities=5%  Similarity=-0.050  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc--------CCCeEEEEeCChHHHHHHHHHHHh
Q 021467           18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA--------LIANYIGIDVATSGIGEARDTWEN   76 (312)
Q Consensus        18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~--------~~~~v~giDis~~~i~~a~~r~~~   76 (312)
                      +|+..+.-..-.++..+|+|+|+|+|..+..++..        ...+++-+++|+...+..+++...
T Consensus        66 ~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          66 LWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            44444433333335578999999999766554332        334799999999987777766553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=86.15  E-value=0.1  Score=40.58  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=62.9

Q ss_pred             CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467           31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV  109 (312)
Q Consensus        31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V  109 (312)
                      +..+|+=||+|.-+ .+...+..-..+|+.+|.+.+.+++.+..+...     ++....+  ...+.+.+    ...|+|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~-----~~~~~~~--~~~l~~~~----~~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR-----VELLYSN--SAEIETAV----AEADLL   99 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG-----SEEEECC--HHHHHHHH----HTCSEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc-----ceeehhh--hhhHHHhh----ccCcEE
Confidence            46899999999754 333444445569999999999999888877553     3333322  11222222    458999


Q ss_pred             EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      ++.-.+--    .....-.-+++.+.+|||..++=.
T Consensus       100 I~aalipG----~~aP~lIt~~mv~~Mk~GSVIVDv  131 (168)
T d1pjca1         100 IGAVLVPG----RRAPILVPASLVEQMRTGSVIVDV  131 (168)
T ss_dssp             EECCCCTT----SSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             EEeeecCC----cccCeeecHHHHhhcCCCcEEEEe
Confidence            88653221    121223345677899999887743

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.33  E-value=1.2  Score=36.05  Aligned_cols=78  Identities=12%  Similarity=0.034  Sum_probs=53.1

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD  107 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD  107 (312)
                      .+.++|=.|++.|-   .+..+++.+ .+|+.+|.+++.++...+....      +..+++|+.+..-.+..-..-++.|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G-~~V~~~~r~~~~l~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPG------IEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHSTT------CEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC------CeEEEEeCCCHHHHHHHHHHhCCce
Confidence            57889999988772   334444445 4999999999988877665432      6678899987543322222457899


Q ss_pred             EEEeccch
Q 021467          108 LVCCFQHL  115 (312)
Q Consensus       108 ~V~~~~~l  115 (312)
                      +++.+...
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            98876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.24  E-value=1.5  Score=35.66  Aligned_cols=86  Identities=8%  Similarity=-0.038  Sum_probs=57.5

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      .+..+|=-|++.|-   .+..+++ ...+|+.+|.+++.++.+.+.........++.++.+|+.+..-..    .....-
T Consensus         2 ~GKvalITGas~GIG~aia~~la~-~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLL-KGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            36678888987762   2233334 445999999999999988887755433445889999998853211    111234


Q ss_pred             CceeEEEeccchhh
Q 021467          104 NQADLVCCFQHLQM  117 (312)
Q Consensus       104 ~~fD~V~~~~~lh~  117 (312)
                      ++.|+++.+.....
T Consensus        81 G~iDilVnnAg~~~   94 (254)
T d2gdza1          81 GRLDILVNNAGVNN   94 (254)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCcCeecccccccc
Confidence            78999888776543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.19  E-value=1.9  Score=35.07  Aligned_cols=83  Identities=8%  Similarity=0.006  Sum_probs=57.0

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----h-hhc
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----M-QEK  102 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~-~~~  102 (312)
                      ++.+||=.|++.|-   .+..+++.+. +|+.+|.+++.++.+.+.....+  ..+.++.+|+.+..-.+.    . ...
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            57889999998772   2344444454 99999999999998888876654  347788999987542211    1 112


Q ss_pred             CCceeEEEeccchh
Q 021467          103 ANQADLVCCFQHLQ  116 (312)
Q Consensus       103 ~~~fD~V~~~~~lh  116 (312)
                      .+..|+++++...+
T Consensus        82 ~g~idilinnag~~   95 (258)
T d1ae1a_          82 DGKLNILVNNAGVV   95 (258)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCcEEEecccccc
Confidence            36789888765543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.62  E-value=1.3  Score=36.19  Aligned_cols=80  Identities=10%  Similarity=0.007  Sum_probs=54.0

Q ss_pred             CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467           31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA  103 (312)
Q Consensus        31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~  103 (312)
                      ++..+|=.|++.|-   .+..+++.+ .+|+.+|.+++.++.+.+.+...+   .+.++.+|+.+..-..    ......
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~G-a~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46788999988772   233444444 589999999999988877775433   3778899998753211    111234


Q ss_pred             CceeEEEeccc
Q 021467          104 NQADLVCCFQH  114 (312)
Q Consensus       104 ~~fD~V~~~~~  114 (312)
                      +..|+++.+..
T Consensus        81 g~iD~lVnnAG   91 (268)
T d2bgka1          81 GKLDIMFGNVG   91 (268)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcceeccccc
Confidence            78999887655

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.12  E-value=2.6  Score=32.34  Aligned_cols=94  Identities=11%  Similarity=-0.043  Sum_probs=59.0

Q ss_pred             CEEEEECC--CCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCceeE
Q 021467           33 VTVCDLYC--GAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL  108 (312)
Q Consensus        33 ~~VLDlGC--G~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~  108 (312)
                      .+||=.|.  |-|..+..+++. +...+++++.+++......+....       + ...|..+.++.+.+.. .+..+|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga-------d-~vi~~~~~~~~~~~~~~~~~GvDv  103 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF-------D-AAVNYKTGNVAEQLREACPGGVDV  103 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC-------S-EEEETTSSCHHHHHHHHCTTCEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc-------e-EEeeccchhHHHHHHHHhccCceE
Confidence            67998773  456677777775 556788888887765554433221       1 1234444444433321 2467999


Q ss_pred             EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467          109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI  145 (312)
Q Consensus       109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~  145 (312)
                      |+-.-.           ...+....++|++||+++..
T Consensus       104 v~D~vG-----------g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         104 YFDNVG-----------GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEESSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             EEecCC-----------chhHHHHhhhccccccEEEe
Confidence            975442           23477788999999999854

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.88  E-value=0.97  Score=34.89  Aligned_cols=97  Identities=8%  Similarity=-0.136  Sum_probs=61.2

Q ss_pred             cCCCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCc
Q 021467           29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQ  105 (312)
Q Consensus        29 ~~~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~  105 (312)
                      .+++.+||=-|.+.|  ..+..+++....+|+++.-|++-.+.+++.-...       .+..+  . ...... ....+.
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~-------vi~~~--~-~~~~~~~~~~~~g   98 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE-------VLARE--D-VMAERIRPLDKQR   98 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE-------EEECC------------CCSCC
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce-------eeecc--h-hHHHHHHHhhccC
Confidence            346788999987654  3556667666779999999999888887653221       11111  0 000110 113468


Q ss_pred             eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467          106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT  146 (312)
Q Consensus       106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~  146 (312)
                      +|+|+-.-.=.           .+....++|+|||+++...
T Consensus        99 vD~vid~vgg~-----------~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2          99 WAAAVDPVGGR-----------TLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEEEECSTTT-----------THHHHHHTEEEEEEEEECS
T ss_pred             cCEEEEcCCch-----------hHHHHHHHhCCCceEEEee
Confidence            99988655322           3677788999999999773