Citrus Sinensis ID: 021480

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccccccccccccccccEEEEEEcEEEcccccccccccccEEEEEEEEEcHHHHHHHHcccccccEEEEEEEcccEEEEEEcccccEEEEccEEEEEEEEccccccEEEEEEEEccccccccccccccHHHHHHcccccEEEEEEEcEEEEEEEEcccccccccccccccEEEEEEEccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHHccccccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccccccccEEcccccEEEEEEEEEccccccccccccccEEEEEEEEccHHHHHHHHHcccHHHEEEEEEccccEEEEEEccccEEEEEEccEEEEEEcccccEEEEEEEEEccccccccccccccHHHHHHHHcccccEEEEEcccHHHHccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEEccccccccccccHccccccccHHHccEEEEEEEccccHHHHHHHHHHHHcccHHEEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MSRSCVKEFILEIWkgqrykvpsslflCQNLIHLELFncllkppstfkgfrnlksldlqhITLSQDVFENLisssptlerltlmnfdgfthlnidapnlqffdiggvfddvtfeNTFHLALVSIGLYvnvkndqamgpgnscKLLRFFvhlphirrLEIQSYFLKYLAignvpsrlprpcvdlnylsiRINFNDLEENLAALCLLrsspnlqelemlarpeetgigvltnfwevdHWTSLFSQLRMVKIVGISGIRSELEFIKFVlsnspvletmtikpasleGGWDLIKELLRFRRASARAEIIYLDPQLQ
Flexible Loop (DISEMBL)
MSRSCVKEFILEiwkgqrykvPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVlsnspvletmtikpasleggWDLIKELLRFRRASARaeiiyldpqlq
Low Complexity Region (SEG)
MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Disordered region (IsUnstruct)
****CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYL*****
Disordered Region (DISOPRED)
*SRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP***
Disordered Region (DISEMBL)
MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Disordered Region (DISPRO)
***SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIYLDPQLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9FZ70	416	F-box/FBD/LRR-repeat prot	yes	no	0.961	0.721	0.386	1e-49
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.907	0.626	0.246	5e-09
Q9FNJ4	443	Putative F-box/FBD/LRR-re	no	no	0.868	0.611	0.268	3e-07
Q9FNI8	466	FBD-associated F-box prot	no	no	0.871	0.583	0.252	5e-07
Q9SJ32	438	Putative F-box/FBD/LRR-re	no	no	0.910	0.648	0.240	7e-07
Q9LQM1	422	Probable FBD-associated F	no	no	0.907	0.670	0.246	2e-06
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.766	0.570	0.240	5e-06
Q9FM94	421	FBD-associated F-box prot	no	no	0.926	0.686	0.232	6e-06
P0C2G1	594	F-box/LRR-repeat protein	no	no	0.858	0.451	0.256	8e-06
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.868	0.610	0.262	1e-05

>sp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1

 Score =  197 bits (500), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 186/316 (58%), Gaps = 16/316 (5%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR+ +KE +L++ +G+ ++VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  
Sbjct: 106 LSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQ 164

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           I ++ +V E+LIS  P LE L+L  FD    L+I APNL +  + G F D+  ENT  L 
Sbjct: 165 ILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLV 223

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
            +S+ +Y++ ++       +   L++F   +P + +L    YF KYL+IG+ P RLP   
Sbjct: 224 AISVSMYMH-EDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTY 282

Query: 181 VDLNYLSI-RINFNDLEENLAALCLLRSSPNLQELEMLARP------EETGIGVLTNFWE 233
           + L  + + ++ F D +E L  L L+  SPNL+EL++ A P      EE G     + +E
Sbjct: 283 IHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF----DLFE 338

Query: 234 VDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKP--ASLEGGWDLIKE 291
            D++      L  VKI   SGIR ELEFI+F+L  SPVLET+T+    +  +   D++ E
Sbjct: 339 RDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIE 398

Query: 292 LLRFRRASARAEIIYL 307
           LLR+ R S RA++++L
Sbjct: 399 LLRYPRVSPRAQLLFL 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 148/333 (44%), Gaps = 50/333 (15%)

Query: 14  WKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQD-VFENLI 72
           W  +  ++P S++ C++L+ L+L N +L  P        +K ++L  +  S   V E +I
Sbjct: 128 WGNEEVQIPPSVYTCESLVSLKLCNVILPNPKVI-SLPLVKVIELDIVKFSNALVLEKII 186

Query: 73  SSSPTLERL------------------TLMNF-------DGFTHLN--IDAPNLQFFDIG 105
           SS   LE L                  +L++F       DG+  L   IDAP L++ +I 
Sbjct: 187 SSCSALESLIISRSSVDDINVLRVSSRSLLSFKHIGNCSDGWDELEVAIDAPKLEYLNIS 246

Query: 106 GVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK---LLRFFVHLPHIRRLEIQSY 162
                  F+     +LV   + +    ++   P +  K   +  F   +  +++L I S+
Sbjct: 247 D-HSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMIQDFLAEISSVKKLFISSH 305

Query: 163 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQEL--EMLARP 220
            L+   I ++   LP   +  N  S+ I+F D    + +   L+S PN++ L  E     
Sbjct: 306 TLE--VIHDLGCELP---LFRNLSSLHIDFEDHTLKMLST-FLQSCPNVKSLVVEFKDSS 359

Query: 221 EETGIGVLTNFWEVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIK- 278
           +E G  VL+           F+ L  VKI   I+G    ++ + ++L NSP+L+ + +  
Sbjct: 360 KEDGDRVLS------IPRCFFTTLEYVKIERPITGEARGMKVVSYILENSPILKKLNLCL 413

Query: 279 PASLEGGWDLI-KELLRFRRASARAEIIYLDPQ 310
            +S E    +I KELL   R S   +++  +P+
Sbjct: 414 NSSREKSESVILKELLTIPRLSTSCKVVVFEPR 446

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNJ4|FDL32_ARATH Putative F-box/FBD/LRR-repeat protein At5g22670 OS=Arabidopsis thaliana GN=At5g22670 PE=4 SV=1

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 57/328 (17%)

Query: 21  VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDL-QHITLSQDVFENLISSSPTLE 79
           +P SL+ C+ L+ L L N  L P         LK++ L  +I  +  + ENLISS P LE
Sbjct: 127 IPHSLYTCETLVSLRLHNVSL-PDFDHVSLPRLKTMHLIDNIYPNDALLENLISSCPVLE 185

Query: 80  RLT----------------------LMNFDGFTH---------LNIDAPNLQFFDIGGVF 108
            L                       ++  DG  +         + IDAP L +  +    
Sbjct: 186 DLNVSRDVENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRLSYLSLR--- 242

Query: 109 DDVTFENTFHLALVS--IGLYVNVKNDQAMGPGNSCKLLR-----FFVHLPHIRRLEIQS 161
           DD +   +F L+ V+    + ++V  D       +  L R     FF  L  +R + +  
Sbjct: 243 DDQS--KSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRLSSVRDMTMSG 300

Query: 162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM-LARP 220
             LK L+       LP+    + + ++  N +DLE+       L S PNL+ L + L   
Sbjct: 301 TTLKVLSRYMRHEPLPQFPNMIQFYAVFCN-SDLEK---LPNFLESCPNLKSLVLELEVF 356

Query: 221 EETGIGVLTNFWEVDHWTSLFSQLRMVKI-VGISGIRSELEFIKFVLSNSPVLETMTIKP 279
           ++  + +L++         L S L  V+I   ISG  +E++ +K+ L NS VL+  T++ 
Sbjct: 357 KKNDLLILSSSIP----KCLRSSLEHVEIHTPISGAEAEMKLVKYFLENSAVLKKFTLQL 412

Query: 280 AS--LEGGWDLIKELLRFRRASARAEII 305
               ++    + KELLRFRR SA  E++
Sbjct: 413 GCKRMDEESIIFKELLRFRRCSASCEVV 440

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 61/333 (18%)

Query: 20  KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTL 78
           ++P SL++C  L++L L   LL           LK++ L+    + DV  E+LISS P L
Sbjct: 146 EMPLSLYVCDTLVNLRLHRVLLGKFEAV-SLPCLKTMRLEENVYANDVVLESLISSCPVL 204

Query: 79  ERLTLM------------------------NF-------DGF----THLNIDAPNLQFFD 103
           + L ++                        NF       DGF    + + IDAP L++  
Sbjct: 205 KDLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLKYLK 264

Query: 104 IGGVFDDVT----FENTFHLALVSIGLYVNVKNDQA--MGPGNSCKLLRFFVHLPHIRRL 157
                DD++      N+  LA V++ +YV  +ND A  +       +  F   +  +  +
Sbjct: 265 FQ---DDLSGSKIITNSGSLAKVNV-VYVFNENDCADVVDIPRRNMVRNFLTSISGVSDM 320

Query: 158 EIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 217
           +I  +F+++L        LP+ C +L+ L   I+   LE       +L S PNL+ L M+
Sbjct: 321 KISQHFVEFLYYYKDFDPLPQFC-NLSRLKAEISLYFLE---ILPTILESCPNLKSLVMV 376

Query: 218 AR---PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLET 274
                 EE    + ++         L S L  V+I   +G  +++E  ++ L NS VL+ 
Sbjct: 377 LEFYLQEEDEPIIFSSVPR-----CLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQK 431

Query: 275 MT--IKPASLEGGWDLIKELLRFRRASARAEII 305
           +   ++ ++ E G+ ++K+LL   R S+   I+
Sbjct: 432 LVLHLRCSTHEDGFYILKDLLALPRGSSTCRIV 464

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ32|FDL15_ARATH Putative F-box/FBD/LRR-repeat protein At2g05300 OS=Arabidopsis thaliana GN=At2g05300 PE=5 SV=2

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 133/324 (41%), Gaps = 40/324 (12%)

Query: 16  GQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISS 74
           G  + +P SL++C +L+ L L+   L   + F     LK L L+ I   ++  FE L+SS
Sbjct: 123 GYSHVMPLSLYVCDSLVSLRLYRLSLVD-AEFVSLPCLKILRLKDIVFHNETTFERLVSS 181

Query: 75  SPTLERLTL-----------MNFDGFTHLNIDAPNLQFFD-IGGVFDD------VTFENT 116
            P LE L +           ++          + +L+F + + GV  D      +  +++
Sbjct: 182 CPVLEELKIDVVWNDGNVYKVHSRSLKRFCFRSSSLRFDESVPGVVVDAPLLCCLIIDDS 241

Query: 117 FHLALVSIGLYVNVKNDQAM-------GPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI 169
              + V   L  N K D ++              +  F   +  +R ++I ++  K +  
Sbjct: 242 VSESFVVTDLESNAKFDISLCFRLWRFDEAKRSIINMFLAWISRVRDMKICAHTFKLIHR 301

Query: 170 GNVPSRLPRPCVDLNYLS---IRINFNDLEENLAALCLLRSSPNLQEL--EMLARPEETG 224
            +  S LPR      Y+S   + +N ++LE        LRSSPNL+ L  E      +  
Sbjct: 302 YSESSPLPR----FGYMSSLYVTLNASELE---WFPIFLRSSPNLKSLILERSGSSHQLS 354

Query: 225 IGVLTNFWEVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPASLE 283
              +           L + L  V+    I G+  E+  + + L NSP L+ +T+   S  
Sbjct: 355 RKAMERVSMSSVPECLLTSLEFVEFKAPICGLGPEMMLVWYFLKNSPTLKKLTLPLKSHS 414

Query: 284 GGWDLIKELLRFRRASARAEIIYL 307
              D  K+LL   R S   EI+ L
Sbjct: 415 TKDDFFKKLLEIPRCSTECEIVIL 438

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375 OS=Arabidopsis thaliana GN=At1g32375 PE=4 SV=2

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 136/328 (41%), Gaps = 45/328 (13%)

Query: 3   RSCVKEFILEIWKG----QRYKVPSSLF-LCQNLIHLELFNCLLKPPSTFKGFRNLKSLD 57
           +SC++E I+EI K         +P SL+  C+ L+ L+L N +L   ++   F +LK+L 
Sbjct: 100 KSCLRELIIEIDKSNSDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATSSFSFPSLKTLS 159

Query: 58  LQHITLSQD-VFENLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFF------------ 102
           L  +    D + + L+S+ P LE L +    +D  T   +   +L+              
Sbjct: 160 LVSMKFPGDELIKMLLSNCPVLEDLVVKRCPYDNVTTFTVRVSSLKCLVLHETELASINA 219

Query: 103 DIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY 162
           D G V D  + E    +     G  V   N   +   N C     +VH   +    I S 
Sbjct: 220 DCGFVIDTPSLE-CLDIEDGRGGFCVIENNMTKVVKANVCN---SYVHTQQLMG-SISSV 274

Query: 163 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL--CLLRSSPNLQELEMLARP 220
              Y+ I +  S+   P   + +  +R+     E     L  C+LR SP L+EL+++   
Sbjct: 275 KRLYVCIPS--SKDAYPVGSVFHCLVRLTICTCETEWLNLLMCVLRDSPKLRELKLVKN- 331

Query: 221 EETGIGVLTNFWEVDHWT-------SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLE 273
                 V  +      W         L + L  ++ V   G   E E   F+L +   L+
Sbjct: 332 -----HVYRSHQPRPCWNEPSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLK 386

Query: 274 TMTI--KPASLEGGWDLIKEL-LRFRRA 298
            +TI  K   +   ++++KEL L FRR+
Sbjct: 387 KVTISSKSTDINKKFEMLKELSLLFRRS 414

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 122/274 (44%), Gaps = 35/274 (12%)

Query: 44  PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM--NFDGFTHLNIDAPNLQF 101
           PS   G  NL+ L ++     QD+  ++    P+L RL+++  N+       ID P+L++
Sbjct: 169 PSLLFGCPNLEELFVER--HDQDLEMDVTFVVPSLRRLSMIDKNYGQCDRYVIDVPSLKY 226

Query: 102 FDI--GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 159
            +I    V+D    EN   L    + +   V +             +F   L  +R+L +
Sbjct: 227 LNITDDAVYDVRQIENMPELVEAHVDITQGVTH-------------KFLRALTSVRQLSL 273

Query: 160 QSYFLKYLA-IGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218
                + +   G + S+L    V LN  ++   + DL  ++     L+ SP LQ L+++ 
Sbjct: 274 CLSLSEVMCPSGIIFSQL----VHLNLSTVVKGWWDLLTSM-----LQDSPKLQSLKLID 324

Query: 219 RPEETGI-GVLTNF-WEVDHWT--SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLET 274
           +  E+G+ G+ T   W++       L   L   + +G  G R + E   +VL N+  L T
Sbjct: 325 KQHESGLCGIETPIGWKLPSSVPECLLFSLEAFEWIGYKGRRGDREVATYVLKNAACLRT 384

Query: 275 MTIKPASLEGG--WDLIKELLRFRRASARAEIIY 306
               P S + G  + ++KEL     AS  +++++
Sbjct: 385 AKFSPESTDVGEKYHMLKELASVPTASTSSKLLF 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g56370 OS=Arabidopsis thaliana GN=At5g56370 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 135/331 (40%), Gaps = 42/331 (12%)

Query: 5   CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-L 63
           C  +F  E +K +  ++P SLF C  L  L+L N  LK       F+ LK+L L+++  L
Sbjct: 103 CELDFDYEHYKTEPCRLPQSLFTCGTLTVLKLKNVSLKDVQFPVCFKLLKTLHLEYVIFL 162

Query: 64  SQDVFENLISSSPTLERLTLMN----FDGFTHLNIDAPNLQ-FFDIGGVFDDVTFENTF- 117
            ++  + L+SS P LE   L       D     ++  P+LQ F   GG   ++       
Sbjct: 163 DKETPQKLLSSCPILEVFDLTRDDDDVDNVMSFSVMVPSLQRFIYCGGSGAELVMNTPSL 222

Query: 118 -HLALVSIGLYVNVKNDQAMGPGN---SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVP 173
            +L L   G    + N   +   +   +C        L  ++RL +       L  G + 
Sbjct: 223 KYLKLSGCGYECMIGNLPEIVEAHVEVACSTDDILTSLASVKRLLLCLPTEPELPTGTIF 282

Query: 174 SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWE 233
            +L      L + S    ++ L      + +L+ SP L+ L++    E  G  +++    
Sbjct: 283 HQLEH----LEFCSCCTEWDIL------MFMLKHSPKLRSLKL---NETHGYTIVSQSDP 329

Query: 234 VDHW-------TSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEG-- 284
           + HW        +L   L  ++     G++ E E   F+L +S  L+  T  PA  +   
Sbjct: 330 MFHWEEPSSVPETLMFVLETLEWRNYRGLKMENELASFLLKHSRRLKIATFSPADCKQVR 389

Query: 285 ---------GWDLIKELLRFRRASARAEIIY 306
                     + ++ EL R  R SA  E+++
Sbjct: 390 IELRTTVGMKYRILMELARLPRGSAECELVF 420

Arabidopsis thaliana (taxid: 3702)

>sp|P0C2G1|FBL26_ARATH F-box/LRR-repeat protein At3g58980 OS=Arabidopsis thaliana GN=At3g58980 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 146/366 (39%), Gaps = 98/366 (26%)

Query: 11  LEIWKGQRYKVPSSLFLCQNLIHLEL------FNCLLKPPSTFKGFRNLKSLDLQHI--- 61
           L+I  G+RY +P  +F C+ L+ LEL      F   L P   F     L++L L +I   
Sbjct: 108 LDICAGRRYSLPLEVFTCKTLVKLELGSDFGGFVVDLVPEDAF--LPALETLLLNYIRFK 165

Query: 62  TLSQDVFENLIS------------------------SSPTLERLTLMNFD----GFTHLN 93
            L +  FE L+S                        SSPTLERLT+ + D     FT +N
Sbjct: 166 DLRRCAFEKLLSACLVLKELVIHNMEWERWKWSGNISSPTLERLTISHVDLYECEFTRIN 225

Query: 94  IDAPNLQFFDIG-GVFDDVTFENTFHLALVSIGL----------YVNVKNDQAMGPGNSC 142
           +D PNL + ++   V DD    N   L  V + L          YV+  +  +  P N  
Sbjct: 226 LDTPNLTYLELSDAVPDDYPIVNLDSLVEVKLDLTLMVDHKYHGYVDDNDTISSNPTNLI 285

Query: 143 KLLRF--FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLA 200
             LR    ++L      +  SYF + + +            +L +L+I  N     + + 
Sbjct: 286 NGLRNVEIMNLQSPNTFQAFSYFHEAIPVFK----------NLYHLTITNN-----DTVI 330

Query: 201 ALC------LLRSSPNLQELEMLA-------RPEETGIGVLTNFWEVDHWTSLFS----- 242
             C      +++  PNL+ L +         RP+            V H  S +S     
Sbjct: 331 GFCWEFLPFVIKKCPNLKTLVIDGPLHYNEDRPK-----------SVCHCLSGYSFLLSC 379

Query: 243 QLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARA 302
            L +++I   SG   E+E +K  L     L+   +K  SL       K+LL   RAS++ 
Sbjct: 380 PLEVLQITDYSGTPGEVEQLKHFLEKLSGLK--LVKLHSLTRFGSDKKKLLMLPRASSKC 437

Query: 303 EIIYLD 308
           +I + D
Sbjct: 438 KIKHYD 443

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 130/320 (40%), Gaps = 49/320 (15%)

Query: 21  VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTLE 79
           +P SL+ C  L+HL+L    +     F     LK LDL  +  + +   + +IS SP LE
Sbjct: 133 IPLSLYTCDTLVHLKLSRVTMVNVE-FVSLPCLKILDLDFVNFTNETTLDKIISCSPVLE 191

Query: 80  RLTLMN------------------------FDGFTHLNIDAPNLQFFDIGG-VFDDVTFE 114
            LT++                         FD    L ID P LQF  I       + F 
Sbjct: 192 ELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSIKSIEFI 251

Query: 115 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPS 174
           N      V I + +   ND +    N      FF  +  +R L I+   +K +       
Sbjct: 252 NLGFTTKVDIDVNLLDPNDLS----NRSMTRDFFTTISRVRSLVIRHGTIKDIFHYMELE 307

Query: 175 RLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEV 234
            L + C  L+ LS   + ++LE     L LL+S P L+ L +     E          EV
Sbjct: 308 PLQQFCY-LSELSAVCSISNLE---MLLNLLKSCPKLESLSLKLVDYEKN-----KKEEV 358

Query: 235 DHWT----SLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPASL---EGGW 286
              T     L S L+ VK+   + G  +EL+  ++ L NS +LE +T+K   +   E   
Sbjct: 359 MSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLKIDYMYKDEANV 418

Query: 287 DLIKELLR-FRRASARAEII 305
           + I++ L    R S+  E++
Sbjct: 419 NHIRQTLHAVPRCSSTCEVV 438

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
255538530	426	ubiquitin-protein ligase, putative [Rici	0.990	0.725	0.822	1e-146
224067322	505	predicted protein [Populus trichocarpa]	0.987	0.609	0.754	1e-135
224136606	416	predicted protein [Populus trichocarpa]	0.990	0.742	0.751	1e-134
147855627	416	hypothetical protein VITISV_019244 [Viti	0.990	0.742	0.703	1e-125
225458412	416	PREDICTED: F-box/FBD/LRR-repeat protein	0.990	0.742	0.703	1e-125
302142424	346	unnamed protein product [Vitis vinifera]	0.983	0.887	0.704	1e-124
356564235	427	PREDICTED: F-box/FBD/LRR-repeat protein	0.987	0.721	0.693	1e-119
357438065	428	F-box/FBD/LRR-repeat protein [Medicago t	0.983	0.717	0.658	1e-110
357438063	660	F-box/FBD/LRR-repeat protein [Medicago t	0.983	0.465	0.658	1e-110
357437071	449	F-box/FBD/LRR-repeat protein [Medicago t	0.967	0.672	0.509	1e-77

>gi|255538530|ref|XP_002510330.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223551031|gb|EEF52517.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/310 (82%), Positives = 285/310 (91%), Gaps = 1/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SRS +KEFILEIWKGQRYKVPSSLF  ++LIHLELFNCLL+PP TFKGFR+LKSLDLQH
Sbjct: 117 LSRSSIKEFILEIWKGQRYKVPSSLFSFEHLIHLELFNCLLQPPLTFKGFRSLKSLDLQH 176

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           ITL+Q+VFENLI S P LERLTLMNFDGFTHLNI+APNLQFFDIGGV+DDVTFENTF L 
Sbjct: 177 ITLTQNVFENLIFSCPLLERLTLMNFDGFTHLNINAPNLQFFDIGGVYDDVTFENTFQLT 236

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           LVSIGLYVNV+ND+ +G G+S KLLRFF +LPHIRRLE+QSYFLKYL+IGNVPSRLP+PC
Sbjct: 237 LVSIGLYVNVQNDRNVGHGSSSKLLRFFANLPHIRRLEVQSYFLKYLSIGNVPSRLPKPC 296

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTS 239
            DLNYLSIRINFNDLEEN AALCLLRSSPN+QELEMLARPEE T +G +TNFWE DHW +
Sbjct: 297 FDLNYLSIRINFNDLEENSAALCLLRSSPNVQELEMLARPEEQTSLGTITNFWEDDHWNN 356

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
           LF QLR+V+IVGISGIR EL+F+ F+LSNSPVLE MT+KPAS +GGW+LIKELLRFRRAS
Sbjct: 357 LFGQLRLVRIVGISGIRCELDFMNFLLSNSPVLERMTVKPASSDGGWELIKELLRFRRAS 416

Query: 300 ARAEIIYLDP 309
           ARAEIIYLDP
Sbjct: 417 ARAEIIYLDP 426

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067322|ref|XP_002302466.1| predicted protein [Populus trichocarpa] gi|222844192|gb|EEE81739.1| predicted protein [Populus trichocarpa]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/309 (75%), Positives = 272/309 (88%), Gaps = 1/309 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR   KEF+LEIWKGQ+YK+PS LF  +NL++LELFNCLLKPP  FKGFRNLK+LDLQH
Sbjct: 196 LSRGSTKEFVLEIWKGQQYKLPSCLFSFKNLVYLELFNCLLKPPLAFKGFRNLKNLDLQH 255

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           +TL+Q+VFE LISS   LERLTL+NFDGFTHLNI+APNLQFFD+GGVFDDV+FENTF LA
Sbjct: 256 VTLAQEVFEKLISSCAMLERLTLINFDGFTHLNINAPNLQFFDVGGVFDDVSFENTFVLA 315

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           LVSIGLYVNVKNDQ +  G+S KLLRFFV+LPH+RRLEIQSYFLKYLAIG VPS+LP+PC
Sbjct: 316 LVSIGLYVNVKNDQNVSYGSSSKLLRFFVNLPHVRRLEIQSYFLKYLAIGKVPSKLPKPC 375

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWEVDHWTS 239
           +DLNYLSIR+NFND EEN AA CLLRS PNLQE+E+LARPEE   +G +T+FW+ DHW  
Sbjct: 376 IDLNYLSIRLNFNDYEENSAAFCLLRSCPNLQEIEILARPEEQAVVGPVTDFWDDDHWKC 435

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
           LF QLR+VKIVGISGIRSEL+ IKF+LSNSPVLE MTIKP S EGGW+L+K+LL FRRAS
Sbjct: 436 LFGQLRLVKIVGISGIRSELDCIKFLLSNSPVLEKMTIKPVSNEGGWELVKQLLHFRRAS 495

Query: 300 ARAEIIYLD 308
            +AE+ +L+
Sbjct: 496 IQAEVFHLE 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136606|ref|XP_002326902.1| predicted protein [Populus trichocarpa] gi|222835217|gb|EEE73652.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/310 (75%), Positives = 266/310 (85%), Gaps = 1/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR   KEF+LEIWKGQRYK+PS LF  +NL HLELFNCLLKPP  FKGFRNLKSLDLQH
Sbjct: 107 LSRGSTKEFVLEIWKGQRYKLPSCLFSFENLTHLELFNCLLKPPPAFKGFRNLKSLDLQH 166

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           +TL+Q+VFENLISS   LERLTLMNFDGFTHL I+APNLQFFDIGG+FDDV+F NT  L 
Sbjct: 167 VTLAQEVFENLISSCALLERLTLMNFDGFTHLKINAPNLQFFDIGGIFDDVSFHNTSLLT 226

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           LVSIGLY NVKND+ +  G+S KLLRFFV+LPH+RRLEIQSYF+KYLAI  VPSRLP+PC
Sbjct: 227 LVSIGLYANVKNDRHVSRGSSSKLLRFFVNLPHLRRLEIQSYFIKYLAISKVPSRLPKPC 286

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWEVDHWTS 239
           +DLNY+SIRINFND EEN AALC+L+S PNLQE+EML RPEE   +   T FW  D W  
Sbjct: 287 MDLNYISIRINFNDFEENSAALCILKSCPNLQEIEMLGRPEEQADVEPQTGFWGDDQWKC 346

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
           LF QLR+VKIVGISGIRSEL+ IKF+LSNSPVLE MT+KPAS+EGGW+L+KELLRFRRAS
Sbjct: 347 LFGQLRLVKIVGISGIRSELDCIKFLLSNSPVLEQMTVKPASIEGGWELVKELLRFRRAS 406

Query: 300 ARAEIIYLDP 309
            +AE+IYL+P
Sbjct: 407 IQAEVIYLEP 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855627|emb|CAN79162.1| hypothetical protein VITISV_019244 [Vitis vinifera]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/310 (70%), Positives = 257/310 (82%), Gaps = 1/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR+ ++EFILEIWKGQ YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQH
Sbjct: 107 LSRTPIREFILEIWKGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFXSLKSLDLQH 166

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           I ++QD FENLISS P LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA
Sbjct: 167 IIMAQDAFENLISSCPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLA 226

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
            VSIGLYV++ ND+ +  GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC
Sbjct: 227 TVSIGLYVDITNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPC 286

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTS 239
           +DL +LSIRINF+ +EENL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW  
Sbjct: 287 IDLTHLSIRINFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNY 346

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
            F+ LR+VK+ GISG+  +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS
Sbjct: 347 XFAHLRVVKLTGISGVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRAS 406

Query: 300 ARAEIIYLDP 309
            RAEIIYLDP
Sbjct: 407 VRAEIIYLDP 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458412|ref|XP_002281901.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis vinifera]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/310 (70%), Positives = 257/310 (82%), Gaps = 1/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR+ ++EFILEIWKGQ YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQH
Sbjct: 107 LSRTPIREFILEIWKGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQH 166

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           I ++QD FENLISS P LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA
Sbjct: 167 IIMAQDAFENLISSCPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLA 226

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
            VSIGLYV++ ND+ +  GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC
Sbjct: 227 TVSIGLYVDITNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPC 286

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTS 239
           +DL +LSIRINF+ +EENL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW  
Sbjct: 287 IDLTHLSIRINFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNY 346

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
            F+ LR+VK+ GISG+  +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS
Sbjct: 347 SFAHLRVVKLTGISGVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRAS 406

Query: 300 ARAEIIYLDP 309
            RAEIIYLDP
Sbjct: 407 VRAEIIYLDP 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142424|emb|CBI19627.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/308 (70%), Positives = 255/308 (82%), Gaps = 1/308 (0%)

Query: 3   RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT 62
           R+ ++EFILEIWKGQ YK+PS L+ CQ+LIHLELFN LLKPP TFKGF +LKSLDLQHI 
Sbjct: 39  RTPIREFILEIWKGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQHII 98

Query: 63  LSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALV 122
           ++QD FENLISS P LE+ TLMNFDGFTHLNI APNLQFFD GGVF DV F+NTF LA V
Sbjct: 99  MAQDAFENLISSCPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATV 158

Query: 123 SIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD 182
           SIGLYV++ ND+ +  GNS  L++FF HLP I+RLEIQSYFLKYLA GNVP +LP PC+D
Sbjct: 159 SIGLYVDITNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCID 218

Query: 183 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTSLF 241
           L +LSIRINF+ +EENL ALCLLRSSPNLQELEMLARPEE T +   T  W+ +HW   F
Sbjct: 219 LTHLSIRINFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYSF 278

Query: 242 SQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASAR 301
           + LR+VK+ GISG+  +L+FI F+L+ SPVLE MT+KPAS +G W+LIK+LLRFRRAS R
Sbjct: 279 AHLRVVKLTGISGVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVR 338

Query: 302 AEIIYLDP 309
           AEIIYLDP
Sbjct: 339 AEIIYLDP 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564235|ref|XP_003550361.1| PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/310 (69%), Positives = 260/310 (83%), Gaps = 2/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           + R  +KEF+LEIWKGQRYK+ S LF CQ+L HLELFNC LKPPSTF+GF+NLKSLDLQH
Sbjct: 118 LCRKSIKEFVLEIWKGQRYKIHSCLFSCQSLTHLELFNCWLKPPSTFQGFKNLKSLDLQH 177

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           +TL+QDVFENLISS P LERLTLMNFDGFT+LNIDAPNL FFDIGG F+D++FENTF LA
Sbjct: 178 VTLAQDVFENLISSCPLLERLTLMNFDGFTNLNIDAPNLLFFDIGGKFEDISFENTFQLA 237

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           +VSIGLY+N + +Q+   G S  LL+FFVHLPH++RLE+QSYFLKYLA+G VP +LPRPC
Sbjct: 238 VVSIGLYLNFEINQSRLHGGSSNLLKFFVHLPHVQRLEVQSYFLKYLAVGVVPIKLPRPC 297

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNF-WEVDHWTS 239
           +DL+YLSIRINFNDL+E  A+LCLLRSSPNLQELE+LARPEE  + +   + WE  +++ 
Sbjct: 298 IDLSYLSIRINFNDLKEISASLCLLRSSPNLQELEILARPEEQTVLLTHTYCWEDVYFSC 357

Query: 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRAS 299
              QLR VKI GISGI+ EL+FI F+L +SPVLE MT+KP +   G +L+KELLRFRRAS
Sbjct: 358 PVMQLRYVKIDGISGIKPELDFINFLLLHSPVLERMTVKPVA-NVGLELMKELLRFRRAS 416

Query: 300 ARAEIIYLDP 309
            +AEIIYL+P
Sbjct: 417 GQAEIIYLEP 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438065|ref|XP_003589308.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355478356|gb|AES59559.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/310 (65%), Positives = 244/310 (78%), Gaps = 3/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           ++R  VKEF+LEIWKGQRYK+PS LF CQ L HLELFNC L PPSTF+GFRNLKSLDLQH
Sbjct: 118 LTRRPVKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGFRNLKSLDLQH 177

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           +TLSQD FENLIS+ P LERLTLMNFDGF +LNI APNLQFFDIGG F+D++F+NT  LA
Sbjct: 178 VTLSQDAFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLA 237

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           +VSIGLYVN ++ Q    G +  L+ F +HLP I+RLEIQSYFLKYLA+G VP +LP PC
Sbjct: 238 VVSIGLYVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPC 297

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL--TNFWEVDHWT 238
           +DL+YLSIRINF D +E  AALCL RSSPNL+ELE+LARPEE  + +    + WE  +  
Sbjct: 298 IDLSYLSIRINFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCWEDVYLD 357

Query: 239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRA 298
               ++R V+I GISGI+ EL+FI F+L  SPVLE MT+KPA L    +L+KELLR RRA
Sbjct: 358 WPVMRVRHVRIDGISGIKPELDFISFILLYSPVLERMTVKPA-LNASPELVKELLRLRRA 416

Query: 299 SARAEIIYLD 308
           S RAE+IYLD
Sbjct: 417 SGRAEVIYLD 426

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438063|ref|XP_003589307.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355478355|gb|AES59558.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/310 (65%), Positives = 244/310 (78%), Gaps = 3/310 (0%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           ++R  VKEF+LEIWKGQRYK+PS LF CQ L HLELFNC L PPSTF+GFRNLKSLDLQH
Sbjct: 350 LTRRPVKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWLIPPSTFQGFRNLKSLDLQH 409

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
           +TLSQD FENLIS+ P LERLTLMNFDGF +LNI APNLQFFDIGG F+D++F+NT  LA
Sbjct: 410 VTLSQDAFENLISTCPLLERLTLMNFDGFNYLNIHAPNLQFFDIGGKFEDISFKNTSQLA 469

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
           +VSIGLYVN ++ Q    G +  L+ F +HLP I+RLEIQSYFLKYLA+G VP +LP PC
Sbjct: 470 VVSIGLYVNFESSQGRLHGRTSNLVEFLIHLPRIQRLEIQSYFLKYLALGAVPVKLPTPC 529

Query: 181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVL--TNFWEVDHWT 238
           +DL+YLSIRINF D +E  AALCL RSSPNL+ELE+LARPEE  + +    + WE  +  
Sbjct: 530 IDLSYLSIRINFYDSKEISAALCLFRSSPNLRELEILARPEEQPLPLAHHADCWEDVYLD 589

Query: 239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRA 298
               ++R V+I GISGI+ EL+FI F+L  SPVLE MT+KPA L    +L+KELLR RRA
Sbjct: 590 WPVMRVRHVRIDGISGIKPELDFISFILLYSPVLERMTVKPA-LNASPELVKELLRLRRA 648

Query: 299 SARAEIIYLD 308
           S RAE+IYLD
Sbjct: 649 SGRAEVIYLD 658

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437071|ref|XP_003588811.1| F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|355477859|gb|AES59062.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/316 (50%), Positives = 215/316 (68%), Gaps = 14/316 (4%)

Query: 1   MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
           +SR  +KE +L  W  +RYK+P SLF CQ+L HL L  C LK P+TF+GF+NL+ L L+ 
Sbjct: 126 LSRRSIKELLLHFWLDKRYKIPLSLFSCQSLRHLSLSCCQLKLPTTFEGFKNLQYLHLEE 185

Query: 61  ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENT--FH 118
           +TL+QD FEN+IS  P L+ L LM  DGF+ +N+ APNL  F   G F+D++F+N+   +
Sbjct: 186 VTLAQDDFENMISGCPLLDHLVLMKIDGFSQINVHAPNLSTFQFYGKFEDISFQNSSQIY 245

Query: 119 LALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR 178
              V + +Y+N K++Q+   G S  LL+FF H PHI+ LEI  YFLKYLA  +VP +LP 
Sbjct: 246 TVYVDLSIYLNSKSNQSKLHGCSSNLLKFFAHQPHIQFLEIGYYFLKYLAADDVPVKLPA 305

Query: 179 PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR-PEETGIGVLTNFWEVDHW 237
           PC+ L  LS+ INFNDL+E  AALCLLRSSPNL++LE+ AR  EET +   T++     W
Sbjct: 306 PCISLCELSLCINFNDLKEISAALCLLRSSPNLKKLEIFARIEEETVLLTPTSYC----W 361

Query: 238 TSLFS------QLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKE 291
             +FS      Q++ V I GISGIRSEL+FI+F+L  SPVLE M +K   +    +LI E
Sbjct: 362 EDIFSGPAMPIQVQHVTIDGISGIRSELDFIRFLLRYSPVLEKMIVKHV-VNVQPELITE 420

Query: 292 LLRFRRASARAEIIYL 307
           LLRF+RAS  AE+IYL
Sbjct: 421 LLRFKRASDEAEVIYL 436

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.961	0.721	0.386	5.2e-49
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.75	0.528	0.273	4.3e-10
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.759	0.508	0.261	5.2e-09
TAIR|locus:505006162	422	AT1G32375 "AT1G32375" [Arabido	0.926	0.684	0.248	1.1e-07
TAIR|locus:2122784	322	AT4G10420 "AT4G10420" [Arabido	0.891	0.863	0.255	8.7e-07
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.842	0.627	0.257	1.2e-06
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.903	0.689	0.244	1.4e-06
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.407	0.291	0.283	1.5e-06
TAIR|locus:2026761	451	AT1G69630 [Arabidopsis thalian	0.201	0.139	0.353	4.5e-06
TAIR|locus:2082657	373	AT3G54910 "AT3G54910" [Arabido	0.868	0.726	0.231	4.5e-06

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 122/316 (38%), Positives = 186/316 (58%)

Query:     1 MSRSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQH 60
             +SR+ +KE +L++ +G+ ++VP+ LF C  L  LEL +C   PP  FKGF  LKSL+L  
Sbjct:   106 LSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQ 164

Query:    61 ITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
             I ++ +V E+LIS  P LE L+L  FD    L+I APNL +  + G F D+  ENT  L 
Sbjct:   165 ILVAPEVIESLISGCPLLEFLSLSYFDSLV-LSISAPNLMYLYLDGEFKDIFLENTPKLV 223

Query:   121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPC 180
              +S+ +Y++ ++       +   L++F   +P + +L    YF KYL+IG+ P RLP   
Sbjct:   224 AISVSMYMH-EDVTDFEQSSDYNLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTY 282

Query:   181 VDLNYLSI-RINFNDLEENLAALCLLRSSPNLQELEMLARP------EETGIGVLTNFWE 233
             + L  + + ++ F D +E L  L L+  SPNL+EL++ A P      EE G     + +E
Sbjct:   283 IHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF----DLFE 338

Query:   234 VDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA--SLEGGWDLIKE 291
              D++      L  VKI   SGIR ELEFI+F+L  SPVLET+T+  +    +   D++ E
Sbjct:   339 RDYFDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIE 398

Query:   292 LLRFRRASARAEIIYL 307
             LLR+ R S RA++++L
Sbjct:   399 LLRYPRVSPRAQLLFL 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 74/271 (27%), Positives = 130/271 (47%)

Query:    58 LQHITLSQDVFENLIS----SSPTLERLTL-MNFDGFTHLN-------IDAPNLQFFDIG 105
             L+ + +S+DV EN++      S +L+ L L ++ D +  +        IDAP L +  + 
Sbjct:   184 LEDLNVSRDV-ENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPRLSYLSLR 242

Query:   106 GVFDDVTFENTFHLALVS--IGLYVNVKNDQAMGPGNSCKLLR-----FFVHLPHIRRLE 158
                DD +   +F L+ V+    + ++V  D       +  L R     FF  L  +R + 
Sbjct:   243 ---DDQS--KSFVLSSVTSPAKVDIDVTFDVVRSVLKNFLLTRSVVRNFFTRLSSVRDMT 297

Query:   159 IQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM-L 217
             +    LK L+       LP+    + + ++  N +DLE+ L     L S PNL+ L + L
Sbjct:   298 MSGTTLKVLSRYMRHEPLPQFPNMIQFYAVFCN-SDLEK-LPNF--LESCPNLKSLVLEL 353

Query:   218 ARPEETGIGVLTNFWEVDHWTSLFSQLRMVKI-VGISGIRSELEFIKFVLSNSPVLETMT 276
                ++  + +L++   +     L S L  V+I   ISG  +E++ +K+ L NS VL+  T
Sbjct:   354 EVFKKNDLLILSS--SIPK--CLRSSLEHVEIHTPISGAEAEMKLVKYFLENSAVLKKFT 409

Query:   277 IKPAS--LEGGWDLIKELLRFRRASARAEII 305
             ++     ++    + KELLRFRR SA  E++
Sbjct:   410 LQLGCKRMDEESIIFKELLRFRRCSASCEVV 440

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
 Identities = 71/271 (26%), Positives = 126/271 (46%)

Query:    57 DLQHITLSQDVFENLISSSPTLERLTL-MNF-------DGF----THLNIDAPNLQFFDI 104
             DL  + + +D  + L   S TL  L +  NF       DGF    + + IDAP L++   
Sbjct:   206 DLIILRMFEDNVKVLRVHSLTLTSLNIDFNFGEGDDFVDGFDKKVSGVLIDAPRLKYLKF 265

Query:   105 GGVFDDVT----FENTFHLALVSIGLYVNVKNDQA--MGPGNSCKLLRFFVHLPHIRRLE 158
                 DD++      N+  LA V++ +YV  +ND A  +       +  F   +  +  ++
Sbjct:   266 Q---DDLSGSKIITNSGSLAKVNV-VYVFNENDCADVVDIPRRNMVRNFLTSISGVSDMK 321

Query:   159 IQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218
             I  +F+++L        LP+ C +L+ L   I+   LE       +L S PNL+ L M+ 
Sbjct:   322 ISQHFVEFLYYYKDFDPLPQFC-NLSRLKAEISLYFLE---ILPTILESCPNLKSLVMVL 377

Query:   219 R--PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMT 276
                 +E    ++  F  V     L S L  V+I   +G  +++E  ++ L NS VL+ + 
Sbjct:   378 EFYLQEEDEPII--FSSVPR--CLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLV 433

Query:   277 I--KPASLEGGWDLIKELLRFRRASARAEII 305
             +  + ++ E G+ ++K+LL   R S+   I+
Sbjct:   434 LHLRCSTHEDGFYILKDLLALPRGSSTCRIV 464

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006162 AT1G32375 "AT1G32375" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 80/322 (24%), Positives = 143/322 (44%)

Query:     3 RSCVKEFILEIWKGQRYK----VPSSLFLC-QNLIHLELFNCLLKPPSTFKGFRNLKSLD 57
             +SC++E I+EI K         +P SL+ C + L+ L+L N +L   ++   F +LK+L 
Sbjct:   100 KSCLRELIIEIDKSNSDNSSVVLPRSLYTCCRMLVTLKLNNAVLVDATSSFSFPSLKTLS 159

Query:    58 LQHITLSQD-VFENLISSSPTLERLTLMN--FDGFTHLNIDAPNLQFF-----DIGGVFD 109
             L  +    D + + L+S+ P LE L +    +D  T   +   +L+       ++  +  
Sbjct:   160 LVSMKFPGDELIKMLLSNCPVLEDLVVKRCPYDNVTTFTVRVSSLKCLVLHETELASINA 219

Query:   110 DVTFE-NTFHLALVSI----GLYVNVKNDQA-MGPGNSCKLLRFFVHLPHIRRLEIQSYF 163
             D  F  +T  L  + I    G +  ++N+   +   N C     +VH   +    I S  
Sbjct:   220 DCGFVIDTPSLECLDIEDGRGGFCVIENNMTKVVKANVCNS---YVHTQQLMG-SISSVK 275

Query:   164 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEE---NLAALCLLRSSPNLQELEMLARP 220
               Y+ I +  S+   P   + +  +R+     E    NL  +C+LR SP L+EL+++   
Sbjct:   276 RLYVCIPS--SKDAYPVGSVFHCLVRLTICTCETEWLNLL-MCVLRDSPKLRELKLVKNH 332

Query:   221 EETGIGVLTNFWEVDHWTS-LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI-- 277
                       + E       L + L  ++ V   G   E E   F+L +   L+ +TI  
Sbjct:   333 VYRSHQPRPCWNEPSAVPECLLTSLETLEWVKYEGTEEEKEVAAFILRSGSCLKKVTISS 392

Query:   278 KPASLEGGWDLIKEL-LRFRRA 298
             K   +   ++++KEL L FRR+
Sbjct:   393 KSTDINKKFEMLKELSLLFRRS 414

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122784 AT4G10420 "AT4G10420" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 8.7e-07, P = 8.7e-07
 Identities = 76/298 (25%), Positives = 125/298 (41%)

Query:    21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLE 79
             +PSSL+ C++L+ L+L   +L          +LK+L L+ +    Q+  + L+S+ P LE
Sbjct:    28 LPSSLYTCKSLVILKLNGGILMDVPRMVCLPSLKTLVLKGVNYFKQESLQRLLSNCPVLE 87

Query:    80 RLT--LMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMG 137
              L   L + D      +  P+LQ   +   +  V  E  F +   S+  +  V  +    
Sbjct:    88 DLVVNLCHHDNMGKFIVIVPSLQRLSLYIGYKRVLDE--FVIDTPSLEYFKLVDRNYDSH 145

Query:   138 P---GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD---LNYLSIRIN 191
             P    N  KL   +V    +R  ++QS      ++  +         D    N L  R+ 
Sbjct:   146 PCLIENMPKLTEAYVD---VRSTDLQSLIGSITSVKRLIISSKAMFGDGYIFNRLE-RLT 201

Query:   192 FNDLEENLAALC--LLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS--LFSQLRMV 247
              + LEEN + L    L+ SPNLQELE  +  +++   +    W         L S L+  
Sbjct:   202 LHVLEENPSNLLSQFLKDSPNLQELEYFSELDDSYENMRMFPWNQPSIVPECLLSSLQKF 261

Query:   248 KIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS-LEGGWDLIKELLRFRRASARAEI 304
                   G   + +   ++L N+  L   TI   + L     +IKEL R  RAS   E+
Sbjct:   262 TWSQYLGRTQDRDIAVYILKNACCLRNATIDSYTCLVPELKMIKELTRSSRASTTCEL 319

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 77/299 (25%), Positives = 139/299 (46%)

Query:    21 VPSSLFLCQ-NLIHLEL--FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT 77
             VPSS+ L    ++HL+   +      PS   G  NL+ L ++     QD+  ++    P+
Sbjct:   143 VPSSVCLPSLKVLHLKTVDYEDDASLPSLLFGCPNLEELFVERH--DQDLEMDVTFVVPS 200

Query:    78 LERLTLM--NFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQA 135
             L RL+++  N+       ID P+L++ +I    DD  ++      + ++   V    D  
Sbjct:   201 LRRLSMIDKNYGQCDRYVIDVPSLKYLNIT---DDAVYDVR---QIENMPELVEAHVDIT 254

Query:   136 MGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA-IGNVPSRLPRPCVDLNYLSIRINFND 194
              G  +  K LR    L  +R+L +     + +   G + S+L    V LN  ++   + D
Sbjct:   255 QGVTH--KFLRA---LTSVRQLSLCLSLSEVMCPSGIIFSQL----VHLNLSTVVKGWWD 305

Query:   195 LEENLAALCLLRSSPNLQELEMLARPEETGI-GVLTNF-WEVDHWTS---LFSQLRMVKI 249
             L   L ++  L+ SP LQ L+++ +  E+G+ G+ T   W++        LFS L   + 
Sbjct:   306 L---LTSM--LQDSPKLQSLKLIDKQHESGLCGIETPIGWKLPSSVPECLLFS-LEAFEW 359

Query:   250 VGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGG--WDLIKELLRFRRASARAEIIY 306
             +G  G R + E   +VL N+  L T    P S + G  + ++KEL     AS  +++++
Sbjct:   360 IGYKGRRGDREVATYVLKNAACLRTAKFSPESTDVGEKYHMLKELASVPTASTSSKLLF 418

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 73/299 (24%), Positives = 132/299 (44%)

Query:    16 GQRYKV-PSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLIS 73
             G++  + PSSL+ C++L+ L+L   +L          +LK+L+L+ +    Q   + L+ 
Sbjct:   115 GEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLLC 174

Query:    74 SSPTLERLT--LMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVK 131
             + P LE L   L + D    L +  P+LQ   +          +T   +L+S  L     
Sbjct:   175 NCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTPSSREFVIDT--PSLLSFQLVDRND 232

Query:   132 NDQAMGPGNSCKLLRFFVHLPH--IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR 189
             N       N  KL   ++++P   I+ L      +K LAI +         +  N+L   
Sbjct:   233 NSHTFLIENMPKLREAYINVPFADIKSLIGSITSVKRLAISSEVG-YGEGFI-FNHLEEL 290

Query:   190 INFNDLEENLAALCLLRSSPNLQELEMLARPEE-TGIGVLTNFWEVDHWTS--LFSQLRM 246
               +N    NL  +  L++SPNL+EL +++  ++   +G+L+  W         + S L+ 
Sbjct:   291 TLWNKYSSNLL-VWFLKNSPNLRELMLVSETDDHENLGMLS--WNQPSIVPECMLSSLQK 347

Query:   247 VKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS-LEGGWDLIKELLRFRRASARAEI 304
                    G   + +   ++L N+  L T TIK  + L    ++I EL    +AS+  E+
Sbjct:   348 FTWFKYLGRPQDRDIAVYILKNACRLRTATIKSDTRLFTKLEMITELRLSSQASSTCEL 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 38/134 (28%), Positives = 62/134 (46%)

Query:    20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISSSPTL 78
             K+P S++ C  L+HL L   +L  P  F     LK +  ++++  ++   + LIS SP L
Sbjct:   130 KIPLSIYTCTTLVHLRLRWAVLTNPE-FVSLPCLKIMHFENVSYPNETTLQKLISGSPVL 188

Query:    79 ERLTLMN--FDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAM 136
             E L L +  +     L + +  L+  DI    D V +     L  +   +Y + KN Q +
Sbjct:   189 EELILFSTMYPKGNVLQLRSDTLKRLDINEFIDVVIYAPL--LQCLRAKMY-STKNFQII 245

Query:   137 GPGNSCKLLRFFVH 150
               G   KL   FV+
Sbjct:   246 SSGFPAKLDIDFVN 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026761 AT1G69630 [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:    20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTL 78
             ++PSS++ C++L+ L+L    L  P  F    +LK +DL     + D+  E LI+  P L
Sbjct:   137 QLPSSIYTCESLVSLKLCGLTLASPE-FVSLPSLKVMDLIITKFADDMGLETLITKCPVL 195

Query:    79 ERLTL 83
             E LT+
Sbjct:   196 ESLTI 200

GO:0005634 "nucleus" evidence=ISM

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

TAIR|locus:2082657 AT3G54910 "AT3G54910" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 71/307 (23%), Positives = 136/307 (44%)

Query:    21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLE 79
             +PS+L+ C++L+ LEL   +           +LK+L L  +  L++D    L+S+ P LE
Sbjct:    81 LPSNLYTCKSLVILELCGEIRLDVPRMAFLPSLKTLQLHSVRYLNEDSLHRLLSNCPVLE 140

Query:    80 RLT--LMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFE-NTFHLALVSIGLYVNVKNDQAM 136
              L   L+  D    L +  P+LQ   +   F   ++E +   +   S+  +  + ++   
Sbjct:   141 DLLVDLLLSDSMEKLTVVVPSLQILSL---FIPHSYEIDGIVIETPSLKYFKLIDHNSK- 196

Query:   137 GPGNSCKLLRFFVHLPHIRR--LEIQSYFLKYLAIGNVPS--RLPRPCVDLNYLSIRINF 192
                + C L++   ++P++    ++++ + +K L IG++ S  RL   C    Y    + F
Sbjct:   197 --SHYC-LVK---NMPNLIEADIDVELHSIKSL-IGSITSVKRLSI-CSQAMYDGGFV-F 247

Query:   193 NDLEENLAALC----------LLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS--L 240
             N L+      C          LL+ S NLQ L++          +L  +W         +
Sbjct:   248 NQLKHLKLCRCKGHSSDLLVRLLKDSSNLQALDLSEMDYHENHDIL--YWHQPSTVPECM 305

Query:   241 FSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGG-WDLIKELLRFRRAS 299
                L+ + +    G   E +   + L N+  L+T TIK    +   +D++KEL    RAS
Sbjct:   306 LLSLQTLNLSAYRGTPEERDLAVYFLKNAVHLKTTTIKSCVFDDERFDMLKELALSSRAS 365

Query:   300 ARAEIIY 306
                ++++
Sbjct:   366 TTCQLVF 372

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	6e-09
pfam08387	51	pfam08387, FBD, FBD	4e-07

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI--KPASLEGGWDLIKELLRFR 296
            L S L +++I G  G   E E +K+ L N+P L+ +TI  + +  E   +++KELL   
Sbjct: 2   CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELLSLP 61

Query: 297 RASARAEIIYL 307
           RAS+  ++ +L
Sbjct: 62  RASSSCQVQFL 72

Length = 72

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTI 277
            L S L  V+  G  G   ELE  K++L N+ VL+ MTI
Sbjct: 11  CLLSSLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.46
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.24
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.04
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.96
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.37
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.1
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.01
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.72
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.72
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.49
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.44
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.25
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.25
PLN03150	623	hypothetical protein; Provisional	97.1
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.02
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.26
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.24
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.19
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.17
PLN03150	623	hypothetical protein; Provisional	96.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.61
KOG4341	483	consensus F-box protein containing LRR [General fu	95.58
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.98
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.93
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.45
PRK15386	426	type III secretion protein GogB; Provisional	94.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.08
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.78
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	91.29
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.98
KOG4237	498	consensus Extracellular matrix protein slit, conta	89.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	88.87
PRK15386	426	type III secretion protein GogB; Provisional	88.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	88.4
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.36
KOG2123	388	consensus Uncharacterized conserved protein [Funct	86.71
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.37
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	85.9
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	85.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	85.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	83.48

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.46  E-value=1.9e-13  Score=92.52  Aligned_cols=69  Identities=33%  Similarity=0.602  Sum_probs=61.6

Q ss_pred             ccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC--CCChHHHHHHHhcccccCCccEEEEe
Q 021480          239 SLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS--LEGGWDLIKELLRFRRASARAEIIYL  307 (312)
Q Consensus       239 ~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~--~~~~~~~~~~l~~~~r~S~~~~v~~~  307 (312)
                      |+.++|+.|+|.+|.|..+|+++++|+++||+.||+|+|....  .+...++.++|..++|||++|+|.|.
T Consensus         2 cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        2 CLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             cchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhCcCCCCceEEEeC
Confidence            7788999999999999999999999999999999999999765  23445678889999999999999873

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.24  E-value=1.1e-11  Score=77.16  Aligned_cols=48  Identities=46%  Similarity=0.785  Sum_probs=43.5

Q ss_pred             cccccc--ccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEe
Q 021480          231 FWEVDH--WTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  278 (312)
Q Consensus       231 ~w~~~~--~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~  278 (312)
                      +|.++.  |+|..+||+.|++.||.|.++|++|++|+++||+.||+|+|.
T Consensus         1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen    1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            363333  889999999999999999999999999999999999999996

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.04  E-value=3.2e-10  Score=114.25  Aligned_cols=122  Identities=14%  Similarity=0.056  Sum_probs=76.0

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      .+++.|+++.+... ..+|..+..+++|+.|+|++|.+..  |..+..+++|++|++++|.+.+. ++..+..+++|+.|
T Consensus       140 ~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  217 (968)
T PLN00113        140 PNLETLDLSNNMLS-GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI  217 (968)
T ss_pred             CCCCEEECcCCccc-ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence            35666776543321 3567777788888888888887642  55677788888888888876543 34456777888888


Q ss_pred             eeeccCCceeEE---EeCCCcceEEEeecc----cceeeecCCcceEEEEeEE
Q 021480           82 TLMNFDGFTHLN---IDAPNLQFFDIGGVF----DDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~~----~~~~~~~~~~L~~l~l~~~  127 (312)
                      ++.+|.....+.   -..++|++|.+.++.    .+..+.++++|+.++++.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  270 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN  270 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence            887764322111   134567777766531    1123456667777776544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.96  E-value=7.4e-10  Score=111.70  Aligned_cols=121  Identities=21%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      ++++.|+++.+... -.+|.  ...++|++|+|++|.+..  |..++.+++|+.|+|++|.+.+. ++..+..++.|++|
T Consensus       118 ~~L~~L~Ls~n~l~-~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L  193 (968)
T PLN00113        118 SSLRYLNLSNNNFT-GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFL  193 (968)
T ss_pred             CCCCEEECcCCccc-cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCee
Confidence            35566666433211 13443  346778888888887643  45567788888888888876543 34456778888888


Q ss_pred             eeeccCCceeEE---EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEE
Q 021480           82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYV  128 (312)
Q Consensus        82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~  128 (312)
                      ++.+|.....+.   -..++|+.|.+.++ +.   +-.+.++++|+.++++.+.
T Consensus       194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            887775332211   12356777777653 11   1234567788888776554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.69  E-value=1.4e-08  Score=89.27  Aligned_cols=237  Identities=14%  Similarity=0.027  Sum_probs=138.0

Q ss_pred             cCCcceEEEeeceeeCC------CCCCCCCcccceeeecceeeC--hH---HHHHHHhCCcccceeeeeccCCce-----
Q 021480           27 LCQNLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLS--QD---VFENLISSSPTLERLTLMNFDGFT-----   90 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~--~~---~l~~ll~~cp~Le~L~l~~~~~~~-----   90 (312)
                      ..+.|+.|.+++|.+..      +..+..+++|++|.++++.+.  ..   .+...+..++.|+.|++.+|....     
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            34558888888887643      122446677888888887765  22   234456667888888888765321     


Q ss_pred             --eEEEeCCCcceEEEeec-cc-----ce--eeecC-CcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEE
Q 021480           91 --HLNIDAPNLQFFDIGGV-FD-----DV--TFENT-FHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  159 (312)
Q Consensus        91 --~~~i~~p~L~~L~~~~~-~~-----~~--~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l  159 (312)
                        .+.-. ++|++|.+.++ +.     .+  .+... ++|++++++.+....       .....+...+..++++++|++
T Consensus       101 ~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-------~~~~~~~~~~~~~~~L~~L~l  172 (319)
T cd00116         101 LESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG-------ASCEALAKALRANRDLKELNL  172 (319)
T ss_pred             HHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc-------hHHHHHHHHHHhCCCcCEEEC
Confidence              11112 56888888763 21     11  13345 889999987654221       011223455667788999999


Q ss_pred             eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc-ccc
Q 021480          160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD-HWT  238 (312)
Q Consensus       160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~-~~~  238 (312)
                      ..+.+..-.....+..++ .+++|++|.+..+.-.......+...+..+|+|+.|++..+....        +... ...
T Consensus       173 ~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~--------~~~~~l~~  243 (319)
T cd00116         173 ANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD--------AGAAALAS  243 (319)
T ss_pred             cCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch--------HHHHHHHH
Confidence            877553100000111111 246899999965533334444567777889999999998764221        0000 001


Q ss_pred             -c--cccCceEEEEEeEecc-hhHHHHHHHHHccCcccceeEEecCC
Q 021480          239 -S--LFSQLRMVKIVGISGI-RSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       239 -~--~~~~L~~v~i~~~~~~-~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                       +  ....|+.+.+.+..-. .+...++++ +.+.+.|+.+.+..+.
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~  289 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNK  289 (319)
T ss_pred             HHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCC
Confidence             1  1368888888764332 233444554 4455889999888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.5e-09  Score=90.62  Aligned_cols=172  Identities=20%  Similarity=0.215  Sum_probs=118.4

Q ss_pred             cCCcceEEEeeceeeCCC--CCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCceeE-----EEeCCC
Q 021480           27 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHL-----NIDAPN   98 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~-----~i~~p~   98 (312)
                      .|+.|+.|.|-+.+++++  ..++.-.+|+.|+|+.+. ++..+++-++++|..|.+|.+++|......     .--+++
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            578888899988888874  234566889999999986 888889999999999999999999754321     114589


Q ss_pred             cceEEEeecccc-----e--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccC
Q 021480           99 LQFFDIGGVFDD-----V--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGN  171 (312)
Q Consensus        99 L~~L~~~~~~~~-----~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~  171 (312)
                      |..|.++|....     +  -...+|+|.+++++.+....+          .....+..++.|++|.++.++. ..+. .
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~----------~~~~~~~kf~~L~~lSlsRCY~-i~p~-~  355 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN----------DCFQEFFKFNYLQHLSLSRCYD-IIPE-T  355 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----------hHHHHHHhcchheeeehhhhcC-CChH-H
Confidence            999999984221     1  135799999999987654322          1123455789999999986642 0111 0


Q ss_pred             CCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEE
Q 021480          172 VPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM  216 (312)
Q Consensus       172 ~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l  216 (312)
                      . ..+ ...++|.+|++.++..+.    .+.-+.+.||+|+.-.-
T Consensus       356 ~-~~l-~s~psl~yLdv~g~vsdt----~mel~~e~~~~lkin~q  394 (419)
T KOG2120|consen  356 L-LEL-NSKPSLVYLDVFGCVSDT----TMELLKEMLSHLKINCQ  394 (419)
T ss_pred             e-eee-ccCcceEEEEeccccCch----HHHHHHHhCccccccce
Confidence            1 111 246788898886664432    35667788998765433

>PLN03210 Resistant to P

Probab=98.54  E-value=1.4e-07  Score=96.41  Aligned_cols=105  Identities=18%  Similarity=0.222  Sum_probs=53.3

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE---e
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---D   95 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i---~   95 (312)
                      .+|..+ ..++|+.|++.++.+.. +.....+++|+.|+|+++..-. .++. ++.+++|++|++.+|..+..+..   .
T Consensus       603 ~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~  679 (1153)
T PLN03210        603 CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQY  679 (1153)
T ss_pred             CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhc
Confidence            555543 45667777777766543 3344566677777776553111 1121 45566666666666654432221   2


Q ss_pred             CCCcceEEEeec--ccceee-ecCCcceEEEEeEE
Q 021480           96 APNLQFFDIGGV--FDDVTF-ENTFHLALVSIGLY  127 (312)
Q Consensus        96 ~p~L~~L~~~~~--~~~~~~-~~~~~L~~l~l~~~  127 (312)
                      .++|+.|.+.++  +..+.. .++++|+.+.++.|
T Consensus       680 L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        680 LNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             cCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            345556655542  111111 14555555555443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=4.3e-08  Score=86.14  Aligned_cols=262  Identities=18%  Similarity=0.073  Sum_probs=153.1

Q ss_pred             CceEEEEEecCC---cceecCCCcccCCcceEEEeeceeeCC-C-------CCCCCCcccceeeecceeeChH---HHHH
Q 021480            5 CVKEFILEIWKG---QRYKVPSSLFLCQNLIHLELFNCLLKP-P-------STFKGFRNLKSLDLQHITLSQD---VFEN   70 (312)
Q Consensus         5 ~v~eL~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-------~~~~~l~~L~~L~L~~~~~~~~---~l~~   70 (312)
                      ++++|+++....   ....++..+...++|+.|+++++.+.. +       ..+..+++|+.|+++++.+.+.   .+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            366777754332   223566666677889999998886652 1       2345678999999999987632   3444


Q ss_pred             HHhCCcccceeeeeccCCce--------eEEEeCCCcceEEEeecc-c-----ce--eeecCCcceEEEEeEEEeecCCc
Q 021480           71 LISSSPTLERLTLMNFDGFT--------HLNIDAPNLQFFDIGGVF-D-----DV--TFENTFHLALVSIGLYVNVKNDQ  134 (312)
Q Consensus        71 ll~~cp~Le~L~l~~~~~~~--------~~~i~~p~L~~L~~~~~~-~-----~~--~~~~~~~L~~l~l~~~~~~~~~~  134 (312)
                      +... |.|++|++.+|....        .+.-..++|+.|.+.++. .     .+  .+..+++|+.++++.+....   
T Consensus       104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---  179 (319)
T cd00116         104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD---  179 (319)
T ss_pred             Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch---
Confidence            4444 679999999875321        111112789999988742 2     11  23456789999887543210   


Q ss_pred             cCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhh-hcCCCcce
Q 021480          135 AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLL-RSSPNLQE  213 (312)
Q Consensus       135 ~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L-~~~p~Le~  213 (312)
                          .....+...+...++++.|+++.+.+...........++ .+++|++|.++.+......+..+...+ ...+.|+.
T Consensus       180 ----~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         180 ----AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             ----HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence                011222233445679999999887653111111111222 477899999965432222222232222 23589999


Q ss_pred             EEEEeccCCCCCcccccccccccccccccCceEEEEEe-EecchhHHHHHHHHHccCcccceeEEecC
Q 021480          214 LEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG-ISGIRSELEFIKFVLSNSPVLETMTIKPA  280 (312)
Q Consensus       214 L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~-~~~~~~~~~~~~~ll~~~~~Le~~~i~~~  280 (312)
                      |.+..+.....+...   -.+..+.  ..+|+.+.+.+ --+.+....+++.+..+++.|+.+.|..+
T Consensus       255 L~l~~n~i~~~~~~~---l~~~~~~--~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         255 LSLSCNDITDDGAKD---LAEVLAE--KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             EEccCCCCCcHHHHH---HHHHHhc--CCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            999887532110000   0001011  26788888774 22345567888888888899999888654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.41  E-value=1.8e-08  Score=91.30  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=49.2

Q ss_pred             CCCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021480            3 RSCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE   79 (312)
Q Consensus         3 ~~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le   79 (312)
                      +.++++|+|......  .+-- .+-+..+|.+|+|+.|++..  +..|..+|.|+.|+|..|++.-... .-+.+.|+|+
T Consensus       172 ~~ni~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~-ltFqgL~Sl~  248 (873)
T KOG4194|consen  172 KVNIKKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG-LTFQGLPSLQ  248 (873)
T ss_pred             CCCceEEeecccccc--ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh-hhhcCchhhh
Confidence            457788888655432  2222 13345588888888887754  3446678888888888877642111 1234566666


Q ss_pred             eeeeecc
Q 021480           80 RLTLMNF   86 (312)
Q Consensus        80 ~L~l~~~   86 (312)
                      .|.|..+
T Consensus       249 nlklqrN  255 (873)
T KOG4194|consen  249 NLKLQRN  255 (873)
T ss_pred             hhhhhhc
Confidence            6666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.37  E-value=1.1e-07  Score=86.40  Aligned_cols=135  Identities=17%  Similarity=0.228  Sum_probs=81.8

Q ss_pred             eecCCCcccC-CcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC--ceeEE
Q 021480           19 YKVPSSLFLC-QNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG--FTHLN   93 (312)
Q Consensus        19 ~~lp~~l~~~-~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~--~~~~~   93 (312)
                      .++|..-+.- .+++.|+|++|++..  ...|.+|.+|.+|.|+.|+++.- -...+.+.|.|+.|+|..+..  +..+.
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhh
Confidence            4555444433 689999999998875  34578888999999999998642 234567799999999987632  11111


Q ss_pred             E-eCCCcceEEEeec----ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021480           94 I-DAPNLQFFDIGGV----FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK  165 (312)
Q Consensus        94 i-~~p~L~~L~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  165 (312)
                      + ..|+|+.+.+..+    +.+-.+-.+.+++.+++..+.-..-.           ...+-+++.|+.|+++.+.++
T Consensus       241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-----------~g~lfgLt~L~~L~lS~NaI~  306 (873)
T KOG4194|consen  241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-----------EGWLFGLTSLEQLDLSYNAIQ  306 (873)
T ss_pred             hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-----------cccccccchhhhhccchhhhh
Confidence            1 2366777766542    22333445677777777654321100           122334555666666655543

>PLN03210 Resistant to P

Probab=98.36  E-value=5.7e-07  Score=92.05  Aligned_cols=100  Identities=17%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeecee-eCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      .++++|++..+.  .-.+|..+..+++|+.|+|+++. +...+.+..+++|++|+|.+|..- ..++..+..++.|+.|+
T Consensus       611 ~~L~~L~L~~s~--l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSK--LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcc--ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEe
Confidence            456666664433  23566666677778888887763 444445667777888877776422 22444556677777777


Q ss_pred             eeccCCceeEEE--eCCCcceEEEee
Q 021480           83 LMNFDGFTHLNI--DAPNLQFFDIGG  106 (312)
Q Consensus        83 l~~~~~~~~~~i--~~p~L~~L~~~~  106 (312)
                      +.+|..+..+..  ..++|+.|.+.|
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsg  713 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSG  713 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCC
Confidence            777654433221  334555555554

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=2.4e-07  Score=73.42  Aligned_cols=108  Identities=23%  Similarity=0.270  Sum_probs=41.7

Q ss_pred             cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEee
Q 021480           27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGG  106 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~  106 (312)
                      .+++|+.|+|++|.+.....+..++.|++|++++|.++.-. ..+...||+|++|.+.++....                
T Consensus        40 ~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~----------------  102 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISD----------------  102 (175)
T ss_dssp             T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---S----------------
T ss_pred             hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCC----------------
Confidence            35677777777777776666777777777777777765310 1223457777777776553211                


Q ss_pred             cccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480          107 VFDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus       107 ~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                       +..+ .+..+|+|+.+++..++-...       ..+- ...+..+|+|+.|+-.
T Consensus       103 -l~~l~~L~~l~~L~~L~L~~NPv~~~-------~~YR-~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  103 -LNELEPLSSLPKLRVLSLEGNPVCEK-------KNYR-LFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -CCCCGGGGG-TT--EEE-TT-GGGGS-------TTHH-HHHHHH-TT-SEETTE
T ss_pred             -hHHhHHHHcCCCcceeeccCCcccch-------hhHH-HHHHHHcChhheeCCE
Confidence             1111 245678888888865543321       1111 2345678888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.22  E-value=1.8e-07  Score=81.57  Aligned_cols=264  Identities=17%  Similarity=0.201  Sum_probs=148.8

Q ss_pred             ceEEEEEecCCcce-ecCCCcccCCcceEEEeecee-eCCC---CCCCCCcccceeeeccee-eChHHHHHHHhCCcccc
Q 021480            6 VKEFILEIWKGQRY-KVPSSLFLCQNLIHLELFNCL-LKPP---STFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLE   79 (312)
Q Consensus         6 v~eL~l~~~~~~~~-~lp~~l~~~~~L~~L~L~~~~-l~~~---~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le   79 (312)
                      .|+|.++......+ .+=.....|+++.+|.+.+|. +.+.   +-...|++|+.|.+..|. +++..+..+..+||+|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            45566554432211 111223468888888888885 3331   112468889999998854 77777888888999999


Q ss_pred             eeeeeccCCcee-----EEEeCCCcceEEEeeccc----cee-e-ecCCcceEEEEeEEEeecCC------------ccC
Q 021480           80 RLTLMNFDGFTH-----LNIDAPNLQFFDIGGVFD----DVT-F-ENTFHLALVSIGLYVNVKND------------QAM  136 (312)
Q Consensus        80 ~L~l~~~~~~~~-----~~i~~p~L~~L~~~~~~~----~~~-~-~~~~~L~~l~l~~~~~~~~~------------~~~  136 (312)
                      +|.+++|+.+..     +.-....++.+...|+..    .+. + ..++-+.++++..+....+.            +..
T Consensus       220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l  299 (483)
T KOG4341|consen  220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL  299 (483)
T ss_pred             HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence            999999875532     111222344443344210    000 0 12333333333222111100            000


Q ss_pred             -----CCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCc
Q 021480          137 -----GPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNL  211 (312)
Q Consensus       137 -----~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~L  211 (312)
                           ..+....+..+..+.++|+.|.+..+.-  . .......+....+.|+.|.+..++.... . .+..+-.+||.|
T Consensus       300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~--f-sd~~ft~l~rn~~~Le~l~~e~~~~~~d-~-tL~sls~~C~~l  374 (483)
T KOG4341|consen  300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ--F-SDRGFTMLGRNCPHLERLDLEECGLITD-G-TLASLSRNCPRL  374 (483)
T ss_pred             cccCCCCCchHHHHHHhcCCCceEEEeccccch--h-hhhhhhhhhcCChhhhhhcccccceehh-h-hHhhhccCCchh
Confidence                 0122344566677788999999876531  1 1111123445677888888865554322 2 477888999999


Q ss_pred             ceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          212 QELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       212 e~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      +.|.++-+....+.+.  .  .-....|...+|..+++.+......+  .++ .+.+++.||++.++...
T Consensus       375 r~lslshce~itD~gi--~--~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le-~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGI--R--HLSSSSCSLEGLEVLELDNCPLITDA--TLE-HLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccCChhhhhhhhhhhh--h--hhhhccccccccceeeecCCCCchHH--HHH-HHhhCcccceeeeechh
Confidence            9999985433211000  0  00003477889999999987765432  333 34688999998888764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.22  E-value=1.2e-08  Score=93.17  Aligned_cols=177  Identities=17%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             eecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcc--------------------
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT--------------------   77 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~--------------------   77 (312)
                      .-+|..+|.+..|..|+|+.|++.. |..+..-.++-.|+|+++.|..- ...++.+..-                    
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETI-PNSLFINLTDLLFLDLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccC-CchHHHhhHhHhhhccccchhhhcCHHHHH
Confidence            3566666666666666666666543 33344444555555655554221 1122233333                    


Q ss_pred             ---cceeeeeccCCceeEEE-eCC---CcceEEEeec---cc--ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHH
Q 021480           78 ---LERLTLMNFDGFTHLNI-DAP---NLQFFDIGGV---FD--DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLL  145 (312)
Q Consensus        78 ---Le~L~l~~~~~~~~~~i-~~p---~L~~L~~~~~---~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  145 (312)
                         |++|.++++.-.. +.+ ..|   +|..|.+++.   ..  +.++.++.+|..++++.+.            .+.+.
T Consensus       172 L~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------------Lp~vP  238 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNH-FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------------LPIVP  238 (1255)
T ss_pred             HhhhhhhhcCCChhhH-HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC------------CCcch
Confidence               4444444442110 000 112   3444444442   11  1234455566666554321            12223


Q ss_pred             HHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          146 RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       146 ~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ..+-++++|+.|.++++.+.-+..+.      ..+.+|+.|.++.+     .+..++.-+...|.|++|.+..+.
T Consensus       239 ecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrN-----QLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  239 ECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRN-----QLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             HHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccc-----hhccchHHHhhhHHHHHHHhccCc
Confidence            44556677777777776553332221      12556666666433     122466666777778777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.3e-07  Score=81.37  Aligned_cols=99  Identities=20%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             CCcceEEEeeceeeCCCCC---CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE---eCCCcce
Q 021480           28 CQNLIHLELFNCLLKPPST---FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI---DAPNLQF  101 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~---~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i---~~p~L~~  101 (312)
                      .++|+.|+|+.|++..+.+   -..++.||+|.|+.|.++..++..++..||.|+.|.+.++.+...-..   ....|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            5788888888887754322   135788999999999998888889999999999999988853221111   1235666


Q ss_pred             EEEeec-c---cce-eeecCCcceEEEEeE
Q 021480          102 FDIGGV-F---DDV-TFENTFHLALVSIGL  126 (312)
Q Consensus       102 L~~~~~-~---~~~-~~~~~~~L~~l~l~~  126 (312)
                      |+++++ +   +.+ .++.+|.|..+.+..
T Consensus       251 LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             ccccCCcccccccccccccccchhhhhccc
Confidence            766663 1   111 244566666666543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.10  E-value=3.4e-06  Score=72.21  Aligned_cols=188  Identities=23%  Similarity=0.268  Sum_probs=108.3

Q ss_pred             cccCCcceEEEeecee---eCC--CC-------CCCCCcccceeeecceeeCh---HHHHHHHhCCcccceeeeeccCCc
Q 021480           25 LFLCQNLIHLELFNCL---LKP--PS-------TFKGFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~---l~~--~~-------~~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      +.+-+.|+..+++..-   ...  |+       .+.++|.|++|+|++|.|..   ..+..++++|..|+.|-|.+|...
T Consensus        54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            3344667777766541   111  21       24567899999999999864   367788999999999999998632


Q ss_pred             e----------------eEEEeCCCcceEEEeec-ccc-------eeeecCCcceEEEEeEEEeecCCccCCCCcchhHH
Q 021480           90 T----------------HLNIDAPNLQFFDIGGV-FDD-------VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLL  145 (312)
Q Consensus        90 ~----------------~~~i~~p~L~~L~~~~~-~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  145 (312)
                      .                ...-..|.|+.|....+ +.+       -.+...|.|+.+.+..+.....       ....+.
T Consensus       134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~e-------G~~al~  206 (382)
T KOG1909|consen  134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPE-------GVTALA  206 (382)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCc-------hhHHHH
Confidence            1                11224567777776642 111       1234457777777654332111       111222


Q ss_pred             HHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHH-hhhcCCCcceEEEEecc
Q 021480          146 RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALC-LLRSSPNLQELEMLARP  220 (312)
Q Consensus       146 ~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~-~L~~~p~Le~L~l~~~~  220 (312)
                      .-+..+++|+.|++..+++...........+| .|++|+.|.++.+.....+..++.. +-+..|+|+.|.+.++.
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            33456778888888777654221111122344 3677777777555433333333433 44567888888776654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.01  E-value=1.2e-07  Score=73.26  Aligned_cols=156  Identities=22%  Similarity=0.259  Sum_probs=102.4

Q ss_pred             CcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceE
Q 021480           24 SLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFF  102 (312)
Q Consensus        24 ~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L  102 (312)
                      .++++..++.|.|+++.+.. |+.++.+.+|+.|++..+.+  +.++.-++..|.|+.|.+..+.-..            
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~issl~klr~lnvgmnrl~~------------   93 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSISSLPKLRILNVGMNRLNI------------   93 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhhhhchhhhheecchhhhhc------------
Confidence            47888999999999998765 77888999999999999988  4477778889999999886443210            


Q ss_pred             EEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCC
Q 021480          103 DIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  182 (312)
Q Consensus       103 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~  182 (312)
                            .+-.++..|.|+.+++.++.-.++..+   |      +|+ .+..++.|.++.+.++++     |..+. .+.+
T Consensus        94 ------lprgfgs~p~levldltynnl~e~~lp---g------nff-~m~tlralyl~dndfe~l-----p~dvg-~lt~  151 (264)
T KOG0617|consen   94 ------LPRGFGSFPALEVLDLTYNNLNENSLP---G------NFF-YMTTLRALYLGDNDFEIL-----PPDVG-KLTN  151 (264)
T ss_pred             ------CccccCCCchhhhhhccccccccccCC---c------chh-HHHHHHHHHhcCCCcccC-----Chhhh-hhcc
Confidence                  011245678888888876553332211   1      222 245566677776655432     22121 2444


Q ss_pred             cceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          183 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       183 L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      |+.|.+.     ..++..++..++....|+.|.|.++.
T Consensus       152 lqil~lr-----dndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  152 LQILSLR-----DNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             eeEEeec-----cCchhhCcHHHHHHHHHHHHhcccce
Confidence            4444442     13344678888888889999998764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=7e-06  Score=69.04  Aligned_cols=220  Identities=17%  Similarity=0.123  Sum_probs=124.3

Q ss_pred             CCceEEEEEecCC-cceecCCCcccCCcceEEEeeceeeCCC-CCC-CCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKG-QRYKVPSSLFLCQNLIHLELFNCLLKPP-STF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~-~~~~lp~~l~~~~~L~~L~L~~~~l~~~-~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+|+|+++..+.. .+.++-+-+-.++.|++|+|+.|.+.++ ... ....+|++|.|.+..+.......++...|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            4677777754431 2233433344678899999999888652 222 355689999998888877778888889999999


Q ss_pred             eeeeccCC------ceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc
Q 021480           81 LTLMNFDG------FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI  154 (312)
Q Consensus        81 L~l~~~~~------~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  154 (312)
                      |+++.+.-      -.++.--+|.++++...+           +++...                  ....++-.-+|++
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~-----------c~~~~w------------------~~~~~l~r~Fpnv  201 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLP-----------CLEQLW------------------LNKNKLSRIFPNV  201 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCC-----------cHHHHH------------------HHHHhHHhhcccc
Confidence            98876621      011111112222222221           111110                  0112334456888


Q ss_pred             cEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCC-Ccccccccc
Q 021480          155 RRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETG-IGVLTNFWE  233 (312)
Q Consensus       155 ~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~-~~~~~~~w~  233 (312)
                      ..+.++.++++..........    |+.+--|.+...  +...|.++ .-|..+|.|..|.+..++...+ .+..     
T Consensus       202 ~sv~v~e~PlK~~s~ek~se~----~p~~~~LnL~~~--~idswasv-D~Ln~f~~l~dlRv~~~Pl~d~l~~~e-----  269 (418)
T KOG2982|consen  202 NSVFVCEGPLKTESSEKGSEP----FPSLSCLNLGAN--NIDSWASV-DALNGFPQLVDLRVSENPLSDPLRGGE-----  269 (418)
T ss_pred             hheeeecCcccchhhcccCCC----CCcchhhhhccc--ccccHHHH-HHHcCCchhheeeccCCcccccccCCc-----
Confidence            888888887765555443332    444445555322  33344333 4568999999999987764310 0000     


Q ss_pred             cccccc-cccCceEEEEEe---E---ecchhHHHHHHHHHc
Q 021480          234 VDHWTS-LFSQLRMVKIVG---I---SGIRSELEFIKFVLS  267 (312)
Q Consensus       234 ~~~~~~-~~~~L~~v~i~~---~---~~~~~~~~~~~~ll~  267 (312)
                         +.. +.-.|..|++.|   .   .....|..|++|.++
T Consensus       270 ---rr~llIaRL~~v~vLNGskIss~er~dSEr~fVRyym~  307 (418)
T KOG2982|consen  270 ---RRFLLIARLTKVQVLNGSKISSRERKDSERRFVRYYMS  307 (418)
T ss_pred             ---ceEEEEeeccceEEecCcccchhhhhhhHHHHHHHHhh
Confidence               111 124555555553   1   123477899999886

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.86  E-value=1.6e-06  Score=74.20  Aligned_cols=189  Identities=18%  Similarity=0.219  Sum_probs=116.0

Q ss_pred             cccCCcceEEEeeceeeCC--CCC----CCCCcccceeeecceeeCh---HH---------HHHHHhCCcccceeeeecc
Q 021480           25 LFLCQNLIHLELFNCLLKP--PST----FKGFRNLKSLDLQHITLSQ---DV---------FENLISSSPTLERLTLMNF   86 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~--~~~----~~~l~~L~~L~L~~~~~~~---~~---------l~~ll~~cp~Le~L~l~~~   86 (312)
                      +..|+.|+.|+|+.|.+.+  ++.    +.++.+|+.|.|.+|.+..   ..         .......-|.|+.+....+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            3467889999999987764  333    2567889999998887653   22         2233456778888887766


Q ss_pred             CCce--------eEEEeCCCcceEEEeec-c--cc-----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhc
Q 021480           87 DGFT--------HLNIDAPNLQFFDIGGV-F--DD-----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH  150 (312)
Q Consensus        87 ~~~~--------~~~i~~p~L~~L~~~~~-~--~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~  150 (312)
                      ....        .++ ..|+|+.+++..+ +  ..     ..+..+|.|+.+++..+....       -.+..+...+..
T Consensus       168 rlen~ga~~~A~~~~-~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~-------egs~~LakaL~s  239 (382)
T KOG1909|consen  168 RLENGGATALAEAFQ-SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL-------EGSVALAKALSS  239 (382)
T ss_pred             ccccccHHHHHHHHH-hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh-------HHHHHHHHHhcc
Confidence            4221        111 2378888887652 1  11     135679999999997654321       123344566777


Q ss_pred             CCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          151 LPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       151 l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      +++|+.|.++.+.++.--...+...+-..+++|+.|.+..+.........+..-...-|.|++|.+..+..
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888888887655310000001122234778888888655433343334444455689999999988764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.72  E-value=1.3e-05  Score=51.94  Aligned_cols=56  Identities=36%  Similarity=0.450  Sum_probs=28.6

Q ss_pred             cceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           30 NLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        30 ~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      +|+.|++++|.+..  +..|.++++|++|+++++.++.- -+..+.++|+|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            45556666554443  23445566666666665554321 1123455566666665554

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.72  E-value=1.5e-07  Score=86.20  Aligned_cols=78  Identities=26%  Similarity=0.315  Sum_probs=49.3

Q ss_pred             CceEEEEEecCCcceecCCCcc-cCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLF-LCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~-~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      |.=.|.++.+.  +-.+|.+++ +.+.|-.|+|++|++.. |+....+..|++|.|+++.+..-.+..+ -+..+|+.|.
T Consensus       127 n~iVLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLh  203 (1255)
T KOG0444|consen  127 NSIVLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLH  203 (1255)
T ss_pred             CcEEEEcccCc--cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhh
Confidence            33344444333  347787765 56788888888888765 6677778888888888876543333332 3345566666


Q ss_pred             eec
Q 021480           83 LMN   85 (312)
Q Consensus        83 l~~   85 (312)
                      +++
T Consensus       204 ms~  206 (1255)
T KOG0444|consen  204 MSN  206 (1255)
T ss_pred             ccc
Confidence            654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=4.8e-06  Score=73.33  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=68.2

Q ss_pred             cCCcceEEEeeceeeCCCC---CCCCCcccceeeecceeeC-hHHHHHHHhCCcccceeeeeccCCc----eeEEEeCCC
Q 021480           27 LCQNLIHLELFNCLLKPPS---TFKGFRNLKSLDLQHITLS-QDVFENLISSSPTLERLTLMNFDGF----THLNIDAPN   98 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~---~~~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~~~~~----~~~~i~~p~   98 (312)
                      +...|+...|.++.+..+.   ....||++++|+|+.+-+. ...+..+....|+||.|.++.+...    ....-..+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3467888888888776543   3567888888888888764 4567788888888888888876421    122235577


Q ss_pred             cceEEEeec-cc--c--eeeecCCcceEEEEeEE
Q 021480           99 LQFFDIGGV-FD--D--VTFENTFHLALVSIGLY  127 (312)
Q Consensus        99 L~~L~~~~~-~~--~--~~~~~~~~L~~l~l~~~  127 (312)
                      |+.|.++++ +.  +  ..+..+|+|+.+++..+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            888888763 21  1  12345788888777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=5.9e-06  Score=69.51  Aligned_cols=126  Identities=19%  Similarity=0.222  Sum_probs=86.2

Q ss_pred             CCCceEEEEEecCCc-ceecCCCcccCCcceEEEeeceeeCCC--CCC--CCCcccceeeeccee--eChHHHHHHHhCC
Q 021480            3 RSCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFNCLLKPP--STF--KGFRNLKSLDLQHIT--LSQDVFENLISSS   75 (312)
Q Consensus         3 ~~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~--~~l~~L~~L~L~~~~--~~~~~l~~ll~~c   75 (312)
                      .+++++|+|+++.+- ...+---+.+|++|..|+|+.|.+..+  ..+  .--++|+.|+|++++  +....+..+...|
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            467889999876531 122222245899999999999965432  111  124789999999986  4556788889999


Q ss_pred             cccceeeeeccCCcee----EEEeCCCcceEEEeeccc--c---eeeecCCcceEEEEeEEE
Q 021480           76 PTLERLTLMNFDGFTH----LNIDAPNLQFFDIGGVFD--D---VTFENTFHLALVSIGLYV  128 (312)
Q Consensus        76 p~Le~L~l~~~~~~~~----~~i~~p~L~~L~~~~~~~--~---~~~~~~~~L~~l~l~~~~  128 (312)
                      |+|.+|++++|..+..    .-+..+.|+++.++.++.  +   +.+...|+|.++++.++-
T Consensus       313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            9999999999876532    112446777777776432  1   235678888888876543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.68  E-value=1.2e-06  Score=67.74  Aligned_cols=69  Identities=25%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             cceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           17 QRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        17 ~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ....+|+.+....+|+.|++.++++.. |..++.+|.|+.|+++-+++  ..+++-++++|.||.|++.++.
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltynn  113 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhccccc
Confidence            346789999999999999999999876 77889999999999988875  3356668899999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.67  E-value=4.2e-05  Score=74.25  Aligned_cols=112  Identities=20%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      +..+|.++..  ....+|..+.  ++|+.|+|++|.+.. |..+  +++|++|++++|.++.  ++.-+  .+.|+.|++
T Consensus       179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence            4455555432  2345666542  468888888887765 3322  3588888888887753  22222  246888888


Q ss_pred             eccCCceeEEE-eCCCcceEEEeec-ccceeeecCCcceEEEEeEE
Q 021480           84 MNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        84 ~~~~~~~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~  127 (312)
                      ++|... .+.. -..+|+.|.++++ +..+.-.-.++|+.++++.+
T Consensus       249 s~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        249 SINRIT-ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDN  293 (754)
T ss_pred             cCCccC-cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCC
Confidence            777432 1211 1136777777653 22221111246777777644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.62  E-value=1.1e-05  Score=63.93  Aligned_cols=132  Identities=17%  Similarity=0.078  Sum_probs=43.0

Q ss_pred             ccCCcceEEEeeceeeCCCCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480           26 FLCQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  104 (312)
Q Consensus        26 ~~~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~  104 (312)
                      -++..++.|+|.++.+.....++ .+..|+.|++++|.++.  +. -+..++.|++|++.++.-..              
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~--------------   78 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISS--------------   78 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--------------
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCc--------------
Confidence            45667899999999988777776 58899999999998864  22 24567888888887664321              


Q ss_pred             eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021480          105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN  184 (312)
Q Consensus       105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~  184 (312)
                         ........+|+|+.++++.+.-.+         ... ...+..+++|+.|++.++++.....  ....+-..+|+|+
T Consensus        79 ---i~~~l~~~lp~L~~L~L~~N~I~~---------l~~-l~~L~~l~~L~~L~L~~NPv~~~~~--YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   79 ---ISEGLDKNLPNLQELYLSNNKISD---------LNE-LEPLSSLPKLRVLSLEGNPVCEKKN--YRLFVIYKLPSLK  143 (175)
T ss_dssp             ----CHHHHHH-TT--EEE-TTS---S---------CCC-CGGGGG-TT--EEE-TT-GGGGSTT--HHHHHHHH-TT-S
T ss_pred             ---cccchHHhCCcCCEEECcCCcCCC---------hHH-hHHHHcCCCcceeeccCCcccchhh--HHHHHHHHcChhh
Confidence               101011247888888886443211         111 1446789999999999987642111  1111112467888


Q ss_pred             eEEEE
Q 021480          185 YLSIR  189 (312)
Q Consensus       185 ~L~l~  189 (312)
                      .|+-.
T Consensus       144 ~LD~~  148 (175)
T PF14580_consen  144 VLDGQ  148 (175)
T ss_dssp             EETTE
T ss_pred             eeCCE
Confidence            77753

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.54  E-value=6.5e-05  Score=72.86  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      ++++.|+++.+.+.         .+|..+.+|+.|.+..+.  .   ..++.-+..+++|+.|++..++.
T Consensus       402 s~L~~LdLS~N~Ls---------sIP~l~~~L~~L~Ls~Nq--L---t~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        402 SELKELMVSGNRLT---------SLPMLPSGLLSLSVYRNQ--L---TRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             cCCCEEEccCCcCC---------CCCcchhhhhhhhhccCc--c---cccChHHhhccCCCeEECCCCCC
Confidence            45666666655432         122223355555553221  1   13555567788888888887754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.52  E-value=0.00013  Score=47.16  Aligned_cols=57  Identities=28%  Similarity=0.328  Sum_probs=45.1

Q ss_pred             CceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceee
Q 021480            5 CVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITL   63 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~   63 (312)
                      ++++|+++.+  ....+|... ..+++|++|++++|.+..  +..|.++++|+.|++++|.+
T Consensus         2 ~L~~L~l~~n--~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNN--KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSS--TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCC--CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5777887544  345888755 468999999999998764  45689999999999999864

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.49  E-value=5.7e-05  Score=72.72  Aligned_cols=150  Identities=24%  Similarity=0.255  Sum_probs=89.8

Q ss_pred             CcceEEEeeceeeCC---CCCC-CCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480           29 QNLIHLELFNCLLKP---PSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  104 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~  104 (312)
                      ++|++|+++|...-.   +... ..||+|++|.+.+..+..+++..+..++|+|+.|+++++....              
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--------------  187 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--------------  187 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--------------
Confidence            678888888864322   1122 3589999999988888777788888888888888887664211              


Q ss_pred             eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh--------hhhcccCCCCCC
Q 021480          105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL--------KYLAIGNVPSRL  176 (312)
Q Consensus       105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~--------~~l~~~~~~~~l  176 (312)
                         +  ..++.+.+|+.+.+..-...         ....+.. +.++.+|+.|+++....        +|+.       .
T Consensus       188 ---l--~GIS~LknLq~L~mrnLe~e---------~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYle-------c  245 (699)
T KOG3665|consen  188 ---L--SGISRLKNLQVLSMRNLEFE---------SYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLE-------C  245 (699)
T ss_pred             ---c--HHHhccccHHHHhccCCCCC---------chhhHHH-HhcccCCCeeeccccccccchHHHHHHHH-------h
Confidence               0  01334555666555322111         1122333 33577777777764311        1111       1


Q ss_pred             CcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021480          177 PRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML  217 (312)
Q Consensus       177 ~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~  217 (312)
                      +..+|+||.|+.+....+.   ..+..++..-|+|+....-
T Consensus       246 ~~~LpeLrfLDcSgTdi~~---~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDINE---EILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             cccCccccEEecCCcchhH---HHHHHHHHhCccHhhhhhh
Confidence            1236688888876442221   2467788888988887654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.46  E-value=4e-05  Score=74.42  Aligned_cols=72  Identities=21%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      ++++|++..+.  ...+|..+.  .+|+.|+|++|.+.. |..+  ..+|+.|++++|.++.  ++.-+  ++.|+.|++
T Consensus       221 nL~~L~Ls~N~--LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l--~s~L~~L~Ls~N~L~~--LP~~l--~~sL~~L~L  290 (754)
T PRK15370        221 NIKTLYANSNQ--LTSIPATLP--DTIQEMELSINRITELPERL--PSALQSLDLFHNKISC--LPENL--PEELRYLSV  290 (754)
T ss_pred             CCCEEECCCCc--cccCChhhh--ccccEEECcCCccCcCChhH--hCCCCEEECcCCccCc--ccccc--CCCCcEEEC
Confidence            45666654332  234555432  356667777666544 2222  2356666666665542  22211  245666666


Q ss_pred             ecc
Q 021480           84 MNF   86 (312)
Q Consensus        84 ~~~   86 (312)
                      ++|
T Consensus       291 s~N  293 (754)
T PRK15370        291 YDN  293 (754)
T ss_pred             CCC
Confidence            655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.44  E-value=0.0003  Score=68.41  Aligned_cols=78  Identities=21%  Similarity=0.172  Sum_probs=43.3

Q ss_pred             eecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCC
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPN   98 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~   98 (312)
                      ..+|..+.  ++|+.|.+.+|.+...+.  ..++|++|++++|.++.  ++.   ..+.|+.|++.+|.. ..+.-..++
T Consensus       214 tsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L-~~Lp~lp~~  283 (788)
T PRK15387        214 TTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPL-THLPALPSG  283 (788)
T ss_pred             CcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCch-hhhhhchhh
Confidence            46777654  367777887777665332  35677888887776652  222   235666666665532 112112234


Q ss_pred             cceEEEee
Q 021480           99 LQFFDIGG  106 (312)
Q Consensus        99 L~~L~~~~  106 (312)
                      |+.|.+.+
T Consensus       284 L~~L~Ls~  291 (788)
T PRK15387        284 LCKLWIFG  291 (788)
T ss_pred             cCEEECcC
Confidence            55555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.25  E-value=4.6e-06  Score=79.72  Aligned_cols=168  Identities=18%  Similarity=0.124  Sum_probs=89.3

Q ss_pred             CcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEEe
Q 021480           29 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDIG  105 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~~  105 (312)
                      .+|+.++++++.+.. |.+...+++|+.+....++++  .++.-++....|+.|.+.+|+...  ...-.-.+|++|.+.
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence            578888888887765 555577888888888888773  244445555666666666653210  000001233444433


Q ss_pred             ec-c---cc-------------------------eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccE
Q 021480          106 GV-F---DD-------------------------VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR  156 (312)
Q Consensus       106 ~~-~---~~-------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~  156 (312)
                      .+ +   .+                         ..=...+.|+.+++..+..           .....+.+.+..+|+.
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L-----------td~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL-----------TDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc-----------cccchhhhccccceee
Confidence            21 0   00                         0001122333333322211           1112466778889999


Q ss_pred             EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      |++..+.+.     .+|...-.++..|++|.++.+.-     ..++.-+.+|+.|++|..+.+
T Consensus       388 LhLsyNrL~-----~fpas~~~kle~LeeL~LSGNkL-----~~Lp~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  388 LHLSYNRLN-----SFPASKLRKLEELEELNLSGNKL-----TTLPDTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             eeecccccc-----cCCHHHHhchHHhHHHhcccchh-----hhhhHHHHhhhhhHHHhhcCC
Confidence            999887653     23332223566777777765422     235555566666776665554

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.25  E-value=0.00032  Score=36.65  Aligned_cols=25  Identities=36%  Similarity=0.688  Sum_probs=22.5

Q ss_pred             ccceeeecceeeChH-HHHHHHhCCc
Q 021480           52 NLKSLDLQHITLSQD-VFENLISSSP   76 (312)
Q Consensus        52 ~L~~L~L~~~~~~~~-~l~~ll~~cp   76 (312)
                      +||+|+|.++.+.++ .+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999765 7999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PLN03150 hypothetical protein; Provisional

Probab=97.10  E-value=0.00034  Score=67.23  Aligned_cols=56  Identities=25%  Similarity=0.285  Sum_probs=28.0

Q ss_pred             ceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           31 LIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        31 L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ++.|+|+++.+..  |..+..+++|+.|+|++|.+.+. ++..+..++.|+.|++++|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~  477 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNS  477 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCC
Confidence            4455555554432  33445555555555555555432 33334555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.06  E-value=0.00012  Score=64.19  Aligned_cols=65  Identities=26%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             EEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcc
Q 021480           10 ILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT   77 (312)
Q Consensus        10 ~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~   77 (312)
                      ++++.+...-++|..+....+|.+|+++++.+.. |..++++ .|+.|-+.++.+  ..+.+-+-.|+.
T Consensus       256 vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl--rTiRr~ii~~gT  321 (565)
T KOG0472|consen  256 VLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL--RTIRREIISKGT  321 (565)
T ss_pred             eeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch--HHHHHHHHcccH
Confidence            3445555556899999888999999999998876 6778888 899999998876  334444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.04  E-value=0.00034  Score=41.88  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             CcceEEEeeceeeCCCCC-CCCCcccceeeecceeeC
Q 021480           29 QNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLS   64 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~   64 (312)
                      ++|++|++++|.+...+. +..|++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            356777777776665333 667777777777777654

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.02  E-value=0.00032  Score=67.68  Aligned_cols=200  Identities=22%  Similarity=0.331  Sum_probs=120.4

Q ss_pred             CcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-------EEE-----------eCCCcceEEEeec--c-
Q 021480           50 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-------LNI-----------DAPNLQFFDIGGV--F-  108 (312)
Q Consensus        50 l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-------~~i-----------~~p~L~~L~~~~~--~-  108 (312)
                      .=++++.++..+......+..+- . +.|++|.+.+.+....       +.|           .-.+|++|+++|.  + 
T Consensus        59 ~f~ltki~l~~~~~~~~~~~~l~-~-~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s  136 (699)
T KOG3665|consen   59 KFNLTKIDLKNVTLQHQTLEMLR-K-QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS  136 (699)
T ss_pred             hheeEEeeccceecchhHHHHHh-h-ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence            33566677766666555444433 2 2388888876542211       111           1247888988883  1 


Q ss_pred             cce--eee-cCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcce
Q 021480          109 DDV--TFE-NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNY  185 (312)
Q Consensus       109 ~~~--~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~  185 (312)
                      ..+  .++ .+|+|+.+.+.+-..          ....+..+..++|+|..|++++..+.-+      .++. .+.||+.
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~~----------~~~dF~~lc~sFpNL~sLDIS~TnI~nl------~GIS-~LknLq~  199 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQF----------DNDDFSQLCASFPNLRSLDISGTNISNL------SGIS-RLKNLQV  199 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCcee----------cchhHHHHhhccCccceeecCCCCccCc------HHHh-ccccHHH
Confidence            122  122 589999999864332          1223567788999999999998766422      1222 3777887


Q ss_pred             EEE-EEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHH
Q 021480          186 LSI-RINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKF  264 (312)
Q Consensus       186 L~l-~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~  264 (312)
                      |.+ +..+....+   +..+ -...+|+.|+|+.............|     -+|. .-|..+++.++.|+.-..++++.
T Consensus       200 L~mrnLe~e~~~~---l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qY-----lec~-~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESYQD---LIDL-FNLKKLRVLDISRDKNNDDTKIIEQY-----LECG-MVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccCCCCCchhh---HHHH-hcccCCCeeeccccccccchHHHHHH-----HHhc-ccCccccEEecCCcchhHHHHHH
Confidence            777 344544333   3334 35899999999886533110000111     3343 22555556667788877889999


Q ss_pred             HHccCcccceeEEe
Q 021480          265 VLSNSPVLETMTIK  278 (312)
Q Consensus       265 ll~~~~~Le~~~i~  278 (312)
                      +++.-+.|+.+..-
T Consensus       270 ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  270 LLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHhCccHhhhhhh
Confidence            99888888877744

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.00071  Score=57.29  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             CcccCCcceEEEeeceeeCCCCC---C-CCCcccceeeecceeeC-hHHHHHHHhCCcccceeeeeccCC---ceeEEEe
Q 021480           24 SLFLCQNLIHLELFNCLLKPPST---F-KGFRNLKSLDLQHITLS-QDVFENLISSSPTLERLTLMNFDG---FTHLNID   95 (312)
Q Consensus        24 ~l~~~~~L~~L~L~~~~l~~~~~---~-~~l~~L~~L~L~~~~~~-~~~l~~ll~~cp~Le~L~l~~~~~---~~~~~i~   95 (312)
                      .+++...+..|.+-+|.++....   + ..++.++.|+|.+|.+. .+.+..++...|+|+.|.++.+.-   +......
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence            34444455567777777664222   2 35678999999999985 577888999999999999987642   2333334


Q ss_pred             CCCcceEEEeecccce-----eeecCCcceEEEEeE
Q 021480           96 APNLQFFDIGGVFDDV-----TFENTFHLALVSIGL  126 (312)
Q Consensus        96 ~p~L~~L~~~~~~~~~-----~~~~~~~L~~l~l~~  126 (312)
                      ..+|+++.+.|..-+|     .+.++|.++++.++.
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence            4578888887743222     234556666665543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.94  E-value=0.00014  Score=61.55  Aligned_cols=180  Identities=17%  Similarity=0.149  Sum_probs=96.2

Q ss_pred             ecCCCcccCCcceEEEeeceeeCCCCCCC-CCcccceeeecceeeChH-H------HH---------------HHHhCCc
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKPPSTFK-GFRNLKSLDLQHITLSQD-V------FE---------------NLISSSP   76 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~L~~~~~~~~-~------l~---------------~ll~~cp   76 (312)
                      .+|..+....+|.+++++.|.-....++. .=|.|.++..+...+... .      +.               ..+-...
T Consensus       205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            45555556688899998888543322221 235677776655433210 0      00               0011233


Q ss_pred             ccceeeeeccCC--ceeEEEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021480           77 TLERLTLMNFDG--FTHLNIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  152 (312)
Q Consensus        77 ~Le~L~l~~~~~--~~~~~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  152 (312)
                      .|++|+++++..  ++.-.--.|.++.|.++.+ +..+ .+..+++|+.++++++.-.            .+..+=..+.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls------------~~~Gwh~KLG  352 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA------------ECVGWHLKLG  352 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH------------hhhhhHhhhc
Confidence            466666665421  1111112467777766653 2111 2445777777777643211            1122333567


Q ss_pred             CccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          153 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      |+++|.+..+.++.+      .++. ++.+|..|++..+  ...+++.+ .-+++.|+||.+.+..++.
T Consensus       353 NIKtL~La~N~iE~L------SGL~-KLYSLvnLDl~~N--~Ie~ldeV-~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL------SGLR-KLYSLVNLDLSSN--QIEELDEV-NHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             CEeeeehhhhhHhhh------hhhH-hhhhheecccccc--chhhHHHh-cccccccHHHHHhhcCCCc
Confidence            788888887766533      1222 4677887777433  23333333 3348889999998877653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.61  E-value=0.0011  Score=58.14  Aligned_cols=48  Identities=27%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             ceecCCCcc-cCCcceEEEeeceeeCC--CCCCCCCcccceeeecc-eeeCh
Q 021480           18 RYKVPSSLF-LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQH-ITLSQ   65 (312)
Q Consensus        18 ~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~-~~~~~   65 (312)
                      +-.+|+..| ..++|++|+|+.|.+..  |..|.++++|.+|.+++ ++|++
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence            347787655 57899999999997654  66788999999998888 66653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.26  E-value=0.0098  Score=47.73  Aligned_cols=95  Identities=17%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc--eeE--EEeCCCcceEEEe
Q 021480           30 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF--THL--NIDAPNLQFFDIG  105 (312)
Q Consensus        30 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~--~i~~p~L~~L~~~  105 (312)
                      ....++|+.|.+.....+.++++|.+|.+..|+++.-+ +.+-...|+|..|.+.++...  ..+  -..+|+|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            44556666665554445566666666666666654310 112223456666666654311  111  1244666666665


Q ss_pred             ec-------ccceeeecCCcceEEEEe
Q 021480          106 GV-------FDDVTFENTFHLALVSIG  125 (312)
Q Consensus       106 ~~-------~~~~~~~~~~~L~~l~l~  125 (312)
                      |+       +..+.+..+|+|+.+++.
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehh
Confidence            52       223345567777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.24  E-value=0.00032  Score=61.62  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=31.5

Q ss_pred             ceecCCCcccCCcceE-EEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           18 RYKVPSSLFLCQNLIH-LELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        18 ~~~lp~~l~~~~~L~~-L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ..++|..+.....+++ +.++++.+.- +..+.++++|+.|+|+++-+.+  ++.-....-.|+.|+++.+
T Consensus       400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccccc
Confidence            3456665554444443 2333333333 2234566666666666654421  2222223333666666544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.19  E-value=0.0039  Score=37.23  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=28.9

Q ss_pred             cccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           51 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        51 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      ++|+.|+++++.+++  ++..++.||+|+.|++++|..
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence            579999999999864  666689999999999998853

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.17  E-value=0.0016  Score=63.00  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=22.9

Q ss_pred             CCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      .+|+.+.++.+  ..   ..++..+..|++|+.+.+..+.
T Consensus       241 ~nl~~~dis~n--~l---~~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  241 LNLQYLDISHN--NL---SNLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             ccceeeecchh--hh---hcchHHHHhcccceEecccchh
Confidence            36776666322  22   2466777889999998887654

>PLN03150 hypothetical protein; Provisional

Probab=96.10  E-value=0.0048  Score=59.42  Aligned_cols=82  Identities=16%  Similarity=0.170  Sum_probs=65.1

Q ss_pred             ceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            6 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         6 v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      |..|+|+-... ...+|..+..+++|+.|+|++|.+..  |..+..+++|+.|+|++|.+.+. ++..++.+++|+.|++
T Consensus       420 v~~L~L~~n~L-~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGL-RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCc-cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence            45555543322 24788889999999999999998864  55688999999999999998764 5667889999999999


Q ss_pred             eccCCc
Q 021480           84 MNFDGF   89 (312)
Q Consensus        84 ~~~~~~   89 (312)
                      .+|...
T Consensus       498 s~N~l~  503 (623)
T PLN03150        498 NGNSLS  503 (623)
T ss_pred             cCCccc
Confidence            988643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.74  E-value=0.0027  Score=58.94  Aligned_cols=91  Identities=19%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             cCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCC
Q 021480          115 NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFND  194 (312)
Q Consensus       115 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~  194 (312)
                      .+++|+.+++..+...         ....+..+...+++++.|.+..+.-  +..... ..+...+++|++|.+..+...
T Consensus       241 ~~~~L~~l~l~~~~~i---------sd~~l~~l~~~c~~L~~L~l~~c~~--lt~~gl-~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLV---------TDIGLSALASRCPNLETLSLSNCSN--LTDEGL-VSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hcCCcCccchhhhhcc---------CchhHHHHHhhCCCcceEccCCCCc--cchhHH-HHHHHhcCcccEEeeecCccc
Confidence            3566666666544321         1222333334467777777543321  001000 112234667777777644332


Q ss_pred             hhhHHHHHHhhhcCCCcceEEEEec
Q 021480          195 LEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       195 ~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                       .+ .++..+..+||+|+.|.+...
T Consensus       309 -~d-~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  309 -TD-SGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             -hH-HHHHHHHHhCcchhhhhhhhc
Confidence             11 134555666887777665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.72  E-value=0.00063  Score=64.20  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             cccceeeecceeeChHHHHHHHhCCcccceeeeeccC--CceeEEEeCCCcceEEEeecc-cce-eeecCCcceEEEEeE
Q 021480           51 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD--GFTHLNIDAPNLQFFDIGGVF-DDV-TFENTFHLALVSIGL  126 (312)
Q Consensus        51 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~--~~~~~~i~~p~L~~L~~~~~~-~~~-~~~~~~~L~~l~l~~  126 (312)
                      |.|+.|+|++|.++.-  . .+..||.|..|+|+++.  -+..+......|..|.+.++. ..+ .+.++.+|+.+++++
T Consensus       187 ~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhh--H-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            4566666666655432  1 45667777777776653  233333444456666666642 211 245666667676654


Q ss_pred             EEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021480          127 YVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  163 (312)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  163 (312)
                      +-..+.         .. ..+++.+..|+.|.+.+++
T Consensus       264 Nll~~h---------se-L~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  264 NLLSEH---------SE-LEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhcc---------hh-hhHHHHHHHHHHHhhcCCc
Confidence            322111         11 2345555566666665553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.64  E-value=0.00041  Score=58.80  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=15.8

Q ss_pred             CcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           50 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        50 l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ...|++++|++|.++.  +...+.-.|.++.|+++++
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N  317 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQN  317 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEecccc
Confidence            3445555555554421  2223333455555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.61  E-value=0.019  Score=46.18  Aligned_cols=57  Identities=28%  Similarity=0.328  Sum_probs=25.9

Q ss_pred             CcceEEEeeceeeCC-CCCC-CCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeecc
Q 021480           29 QNLIHLELFNCLLKP-PSTF-KGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~-~~~~-~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ++|.+|.|.+|++.. .+.+ .-+|+|++|.|.+|++.. +++.. +..||.|++|++.++
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            455555555554433 1222 224555555555555421 12222 234555555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.58  E-value=0.0075  Score=53.50  Aligned_cols=78  Identities=26%  Similarity=0.382  Sum_probs=44.3

Q ss_pred             CCcceEEEeeceeeCCCC---CC-CCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCC-----ceeEEEeCC
Q 021480           28 CQNLIHLELFNCLLKPPS---TF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDG-----FTHLNIDAP   97 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~---~~-~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~-----~~~~~i~~p   97 (312)
                      |..|+.|..++|...+..   .+ .++++|+.|-+..|. |++..+..+=.+||.||.+++..|..     +..+...+|
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            566666666666432211   11 355666666666665 55555555556666666666666532     233445566


Q ss_pred             CcceEEEe
Q 021480           98 NLQFFDIG  105 (312)
Q Consensus        98 ~L~~L~~~  105 (312)
                      .|+.+.++
T Consensus       373 ~lr~lsls  380 (483)
T KOG4341|consen  373 RLRVLSLS  380 (483)
T ss_pred             hhccCChh
Confidence            66666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.04  E-value=0.0063  Score=50.63  Aligned_cols=84  Identities=23%  Similarity=0.165  Sum_probs=56.1

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeCh-HHHHHHHhCCcccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l   83 (312)
                      .|+++.++-+....-++....-....|+.|.+.++.+.....+.-+|+||+|.++.+.+.. ..+.-++..||+|.+|.+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l   98 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL   98 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence            3455555533221123444444557788888888888776777788999999999994322 236667778899999988


Q ss_pred             eccCC
Q 021480           84 MNFDG   88 (312)
Q Consensus        84 ~~~~~   88 (312)
                      +++..
T Consensus        99 s~Nki  103 (260)
T KOG2739|consen   99 SGNKI  103 (260)
T ss_pred             cCCcc
Confidence            87643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.98  E-value=0.013  Score=53.15  Aligned_cols=99  Identities=23%  Similarity=0.228  Sum_probs=55.8

Q ss_pred             cCCcceEEEeeceeeCCCCCC-CCC-cccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE--eCCCcceE
Q 021480           27 LCQNLIHLELFNCLLKPPSTF-KGF-RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI--DAPNLQFF  102 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~-~~l-~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i--~~p~L~~L  102 (312)
                      ..+.+..|.+.++.+...+.. ..+ ++|+.|+++++.+..  ++.-+..+|.|+.|++.++....--..  ..++|+.+
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L  191 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL  191 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence            345677777777766553333 333 277888777776633  334456777788888777753321111  56677777


Q ss_pred             EEeec-ccceee--ecCCcceEEEEeEE
Q 021480          103 DIGGV-FDDVTF--ENTFHLALVSIGLY  127 (312)
Q Consensus       103 ~~~~~-~~~~~~--~~~~~L~~l~l~~~  127 (312)
                      .+++. +..+.-  .....|+++.+..+
T Consensus       192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         192 DLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eccCCccccCchhhhhhhhhhhhhhcCC
Confidence            77763 333321  12233666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.93  E-value=0.038  Score=46.56  Aligned_cols=165  Identities=20%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             CCCCcccceeeecceeeCh---HHHHHHHhCCcccceeeeeccCCce----------------eEEEeCCCcceEEEeec
Q 021480           47 FKGFRNLKSLDLQHITLSQ---DVFENLISSSPTLERLTLMNFDGFT----------------HLNIDAPNLQFFDIGGV  107 (312)
Q Consensus        47 ~~~l~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~l~~~~~~~----------------~~~i~~p~L~~L~~~~~  107 (312)
                      +..||.|.+.+|++|.|..   +.+..+++....|+.|.+.+|....                .-.-+.|.|+++....+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4567777777777777653   3456677777777777777764221                01124456665554321


Q ss_pred             -ccce-------eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh--hcCCCccEEEEeeeehhhhcccCCCCCCC
Q 021480          108 -FDDV-------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLP  177 (312)
Q Consensus       108 -~~~~-------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~l~~~~~~~~l~  177 (312)
                       +...       .+....+|..+.+..+....-       .... ..+.  .-+.+|+.|++..+++....+......++
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpe-------gv~~-L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~  239 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPE-------GVTM-LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC  239 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcc-------hhHH-HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence             1110       122224555555543321100       0011 1111  12456777777666553322222222333


Q ss_pred             cccCCcceEEEEEEcCChhhHHHHHHhhh--cCCCcceEEEEecc
Q 021480          178 RPCVDLNYLSIRINFNDLEENLAALCLLR--SSPNLQELEMLARP  220 (312)
Q Consensus       178 ~~f~~L~~L~l~~~~~~~~~~~~l~~~L~--~~p~Le~L~l~~~~  220 (312)
                       .+++|+.|.+..|+.+..+..++..-+.  -.|+|..|..+.+.
T Consensus       240 -~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         240 -EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             -ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence             3666777777555544333222222211  24777776665543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=0.0042  Score=52.28  Aligned_cols=62  Identities=18%  Similarity=0.056  Sum_probs=47.0

Q ss_pred             cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      .++.|++|.|+-|.+.....+..|.+|+.|.|+.|.|.+-+--.-+.+.|+|+.|+|..+..
T Consensus        39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            46788899998888877666788899999999988886532223356889999999987643

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.43  E-value=0.079  Score=47.82  Aligned_cols=89  Identities=18%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             cCCcceEEEeeceeeCCCCCCCCCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEe
Q 021480           27 LCQNLIHLELFNCLLKPPSTFKGFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIG  105 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~  105 (312)
                      .|..+.+|++++|.+...+   .+| +|++|.+++|.-- ..++..+  .+.|++|.+.+|..+..+   .++|++|.+.
T Consensus        50 ~~~~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~  120 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP---VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGL---PESVRSLEIK  120 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccccc---ccccceEEeC
Confidence            4788999999999666533   344 6999999886421 1122222  358999999988665433   3678888876


Q ss_pred             ecccceeeecC-CcceEEEEe
Q 021480          106 GVFDDVTFENT-FHLALVSIG  125 (312)
Q Consensus       106 ~~~~~~~~~~~-~~L~~l~l~  125 (312)
                      +.... .+..+ ++|+.+.+.
T Consensus       121 ~n~~~-~L~~LPssLk~L~I~  140 (426)
T PRK15386        121 GSATD-SIKNVPNGLTSLSIN  140 (426)
T ss_pred             CCCCc-ccccCcchHhheecc
Confidence            53211 12233 357777663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.42  E-value=0.017  Score=53.52  Aligned_cols=82  Identities=34%  Similarity=0.486  Sum_probs=47.6

Q ss_pred             cccCCcceEEEeece-eeCC------CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCce-----e
Q 021480           25 LFLCQNLIHLELFNC-LLKP------PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFT-----H   91 (312)
Q Consensus        25 l~~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~-----~   91 (312)
                      ...|+.|+.|++++| ....      ......+++|+.|++.++. +++..+..+...||.|+.|.+..|..+.     .
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            345677777777763 2111      1122345777777777766 6666666666667777777766665321     1


Q ss_pred             EEEeCCCcceEEEee
Q 021480           92 LNIDAPNLQFFDIGG  106 (312)
Q Consensus        92 ~~i~~p~L~~L~~~~  106 (312)
                      +.-.+|+|++|.+.+
T Consensus       290 i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  290 IAERCPSLRELDLSG  304 (482)
T ss_pred             HHHhcCcccEEeeec
Confidence            222456677777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.08  E-value=0.012  Score=53.30  Aligned_cols=153  Identities=21%  Similarity=0.240  Sum_probs=101.2

Q ss_pred             cceecCCCcccCC-cceEEEeeceeeCCC-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE
Q 021480           17 QRYKVPSSLFLCQ-NLIHLELFNCLLKPP-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI   94 (312)
Q Consensus        17 ~~~~lp~~l~~~~-~L~~L~L~~~~l~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i   94 (312)
                      ....+|+.....+ +|+.|+++++.+... .....+++|+.|++..+.+.+  +.......+.|+.|+++++.... +..
T Consensus       127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~-l~~  203 (394)
T COG4886         127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISD-LPP  203 (394)
T ss_pred             ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcccc-Cch
Confidence            3468888777775 999999999988763 467899999999999998744  55555588999999999875432 222


Q ss_pred             --eCCC-cceEEEeec-ccc--eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhc
Q 021480           95 --DAPN-LQFFDIGGV-FDD--VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLA  168 (312)
Q Consensus        95 --~~p~-L~~L~~~~~-~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~  168 (312)
                        ..++ |+++.+.++ ...  ..+.+..++..+.+.......            +...++.+++++.|++..+.+..+.
T Consensus       204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------------~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------------LPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------------ccchhccccccceeccccccccccc
Confidence              1333 888877775 322  123455555555543222110            0244667888999999888764332


Q ss_pred             ccCCCCCCCcccCCcceEEEEEE
Q 021480          169 IGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       169 ~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      .      ++ .+.+++.|.++..
T Consensus       272 ~------~~-~~~~l~~L~~s~n  287 (394)
T COG4886         272 S------LG-SLTNLRELDLSGN  287 (394)
T ss_pred             c------cc-ccCccCEEeccCc
Confidence            2      22 3778888888543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.78  E-value=0.097  Score=44.21  Aligned_cols=184  Identities=15%  Similarity=0.121  Sum_probs=100.6

Q ss_pred             CCcceEEEeeceeeCC--CC----CCCCCcccceeeecceee---ChH------HHHHHHhCCcccceeeeeccCCce--
Q 021480           28 CQNLIHLELFNCLLKP--PS----TFKGFRNLKSLDLQHITL---SQD------VFENLISSSPTLERLTLMNFDGFT--   90 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~--~~----~~~~l~~L~~L~L~~~~~---~~~------~l~~ll~~cp~Le~L~l~~~~~~~--   90 (312)
                      ..+++.++|++|.+..  ..    .+.+-.+|+.-.+++...   .++      .+...+..||.|+..+++++-...  
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            5788999999998754  11    123445555555554321   111      233445799999999999874321  


Q ss_pred             -----eEEEeCCCcceEEEeec-ccce----------------eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh
Q 021480           91 -----HLNIDAPNLQFFDIGGV-FDDV----------------TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF  148 (312)
Q Consensus        91 -----~~~i~~p~L~~L~~~~~-~~~~----------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l  148 (312)
                           .+-..+..|++|.++.+ +.++                ...+.|.|+.+.+.-+....       +....+...+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~l  181 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-------GSKELSAALL  181 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------CcHHHHHHHH
Confidence                 11224557888887641 2111                12356778777665333221       1111122334


Q ss_pred             hcCCCccEEEEeeeehhhhcccCCC---CCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          149 VHLPHIRRLEIQSYFLKYLAIGNVP---SRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       149 ~~l~~l~~L~l~~~~~~~l~~~~~~---~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      ..-.+++.+.+..+.++.  .|...   .++. -..+|+.|++..++-...+-..+...+...|.|+.|.+..|-.
T Consensus       182 ~sh~~lk~vki~qNgIrp--egv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         182 ESHENLKEVKIQQNGIRP--EGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HhhcCceeEEeeecCcCc--chhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            444678888887766531  11000   0111 2457777777555433333334666777788888888877643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.52  E-value=0.022  Score=45.75  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=43.7

Q ss_pred             eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCce
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      +.+|-.-..-..++.++-+++.+..  ...+.+++.+++|.+..|. +.+..+..+=...|+|++|++++|..++
T Consensus        91 ~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen   91 FSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             ecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            3555543334456666666654432  3345667777777777775 5555566665567777777777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=91.29  E-value=0.32  Score=48.73  Aligned_cols=64  Identities=19%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             CcceEEEeeceeeCCCCCCCCCcccceeeecceee-ChHHHHHHHhCCcccceeeeeccCCceeE
Q 021480           29 QNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITL-SQDVFENLISSSPTLERLTLMNFDGFTHL   92 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~l~~~~~~~~~   92 (312)
                      ...++..+-++.+...+....++.|++|-+.++.. -...-..++...|.|+.|++++|.....+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            45677777777665444445667888888877752 11112234667888999998887665443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.98  E-value=0.26  Score=24.83  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=13.1

Q ss_pred             CcccceeeecceeeChHHHHH
Q 021480           50 FRNLKSLDLQHITLSQDVFEN   70 (312)
Q Consensus        50 l~~L~~L~L~~~~~~~~~l~~   70 (312)
                      +++|++|+|++|.++++....
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHH
Confidence            467888888888887765544

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=89.72  E-value=0.063  Score=47.59  Aligned_cols=79  Identities=22%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             ceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            6 VKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         6 v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      |+-..+++...+-.++|..+-  .+-+.++|..|.+..  +..|..+++|+.|+|+.|.|+.-+ +..+.+.+.|.+|.+
T Consensus        46 ~~g~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvl  122 (498)
T KOG4237|consen   46 VEGGIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVL  122 (498)
T ss_pred             CCCceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHh
Confidence            444566665544445554432  234778888887654  567899999999999999875432 344567777888888


Q ss_pred             eccC
Q 021480           84 MNFD   87 (312)
Q Consensus        84 ~~~~   87 (312)
                      .++.
T Consensus       123 yg~N  126 (498)
T KOG4237|consen  123 YGNN  126 (498)
T ss_pred             hcCC
Confidence            7643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.36  E-value=0.04  Score=41.65  Aligned_cols=77  Identities=23%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             cccCCcceEEEeeceeeCC-CCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceE
Q 021480           25 LFLCQNLIHLELFNCLLKP-PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFF  102 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~-~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L  102 (312)
                      +..-..|...+|++|.+.. |+.|. .+|.+++|++..+.+.  +++.-+...|.|+.|.++.+......++-+| |..|
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l  125 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKL  125 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhhcccccCccccchHHHHH-HHhH
Confidence            3344677888899988765 55554 4678999999988774  3555588899999999998865544444444 5555


Q ss_pred             EE
Q 021480          103 DI  104 (312)
Q Consensus       103 ~~  104 (312)
                      .+
T Consensus       126 ~~  127 (177)
T KOG4579|consen  126 DM  127 (177)
T ss_pred             HH
Confidence            43

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.87  E-value=0.24  Score=41.46  Aligned_cols=60  Identities=22%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             CCcceEEEeeceeeCCCCC----CCCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCC
Q 021480           28 CQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~----~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +++|+.|.++.|.+.+...    ...+|+|++|.+++|.+.. +.+.. +...++|..|++.+|..
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCCc
Confidence            4677888887774332111    2345888888888877653 22222 23445566777776653

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.84  E-value=1.1  Score=40.78  Aligned_cols=88  Identities=15%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeece-eeCCCCCCCCCcccceeeeccee-eChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L   81 (312)
                      ++.+.|+++.+.  .-.+|. +  -.+|+.|.+++| .+...+.. -.++|+.|.+.+|. +.  .+      -+.|+.|
T Consensus        52 ~~l~~L~Is~c~--L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~--sL------P~sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCD--IESLPV-L--PNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEIS--GL------PESVRSL  117 (426)
T ss_pred             cCCCEEEeCCCC--CcccCC-C--CCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccc--cc------ccccceE
Confidence            456677775442  234552 1  135899999887 44432221 13589999998883 32  11      2457777


Q ss_pred             eeeccCCceeEEEeCCCcceEEEee
Q 021480           82 TLMNFDGFTHLNIDAPNLQFFDIGG  106 (312)
Q Consensus        82 ~l~~~~~~~~~~i~~p~L~~L~~~~  106 (312)
                      .+..+.. ..+..-.++|+.|.+.+
T Consensus       118 ~L~~n~~-~~L~~LPssLk~L~I~~  141 (426)
T PRK15386        118 EIKGSAT-DSIKNVPNGLTSLSINS  141 (426)
T ss_pred             EeCCCCC-cccccCcchHhheeccc
Confidence            7753321 12333335677776643

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.40  E-value=0.32  Score=24.00  Aligned_cols=14  Identities=36%  Similarity=0.261  Sum_probs=8.4

Q ss_pred             cceEEEeeceeeCC
Q 021480           30 NLIHLELFNCLLKP   43 (312)
Q Consensus        30 ~L~~L~L~~~~l~~   43 (312)
                      +|+.|+|++|.+..
T Consensus         1 ~L~~Ldls~n~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS   14 (22)
T ss_dssp             TESEEEETSSEESE
T ss_pred             CccEEECCCCcCEe
Confidence            35666666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.36  E-value=0.015  Score=43.80  Aligned_cols=75  Identities=19%  Similarity=0.151  Sum_probs=33.7

Q ss_pred             ceEEEeeceeeCC----CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEE
Q 021480           31 LIHLELFNCLLKP----PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDI  104 (312)
Q Consensus        31 L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~  104 (312)
                      +.-++|++|.+.-    +..+....-|++.+|++|.+.+ .-..+...+|.+++|.+.++...+  .=-..-|.|+++.+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            3345555554321    1222334445555666655421 122445555666666666553211  00112255666655


Q ss_pred             ee
Q 021480          105 GG  106 (312)
Q Consensus       105 ~~  106 (312)
                      ..
T Consensus       108 ~~  109 (177)
T KOG4579|consen  108 RF  109 (177)
T ss_pred             cc
Confidence            54

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.36  E-value=0.15  Score=41.06  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             cccCCcceEEEeecee-eCC--CCCC-CCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCc
Q 021480           25 LFLCQNLIHLELFNCL-LKP--PSTF-KGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~-l~~--~~~~-~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      +..++.++.|.+.+|. +++  ...+ +..++|++|+|++|. |++..+.-+ ...++|+.|.+.+-..+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhh
Confidence            4567889999999994 554  2222 257899999999986 888777654 56788888888765443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.71  E-value=0.04  Score=46.61  Aligned_cols=77  Identities=18%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCC---CCCCCcccceeeecceeeC---hHHH-HHHHhCCc
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS---TFKGFRNLKSLDLQHITLS---QDVF-ENLISSSP   76 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~---~~~~l~~L~~L~L~~~~~~---~~~l-~~ll~~cp   76 (312)
                      +.+|.|.|+++..   .--..+..|++|+.|+|..|.+.+..   -+.++|+|++|.|..|.-.   +... ...+...|
T Consensus        41 p~lEVLsLSvNkI---ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   41 PLLEVLSLSVNKI---SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             ccceeEEeecccc---ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            4567777766652   22234667999999999999887633   3578999999999887532   2222 24556788


Q ss_pred             ccceeee
Q 021480           77 TLERLTL   83 (312)
Q Consensus        77 ~Le~L~l   83 (312)
                      +|+.|+=
T Consensus       118 nLkKLDn  124 (388)
T KOG2123|consen  118 NLKKLDN  124 (388)
T ss_pred             cchhccC
Confidence            8888874

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.37  E-value=0.66  Score=23.86  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=13.3

Q ss_pred             Ccccceeeeccee-eChHHHHHH
Q 021480           50 FRNLKSLDLQHIT-LSQDVFENL   71 (312)
Q Consensus        50 l~~L~~L~L~~~~-~~~~~l~~l   71 (312)
                      +++|+.|+|++|. +++..+..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            4566777776664 666555543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=85.90  E-value=0.23  Score=49.81  Aligned_cols=86  Identities=19%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             eecCCCcc-cCCcceEEEeecee-eC-CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeE---
Q 021480           19 YKVPSSLF-LCQNLIHLELFNCL-LK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHL---   92 (312)
Q Consensus        19 ~~lp~~l~-~~~~L~~L~L~~~~-l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~---   92 (312)
                      ..++..++ .++.|++|+|++|. +. .|..++.|-+|+.|+++++.+.  .++.-+.....|.+|++..+.....+   
T Consensus       560 ~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i  637 (889)
T KOG4658|consen  560 LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI  637 (889)
T ss_pred             hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch
Confidence            45555444 47899999999873 33 3667888999999999998875  36666677778999999877643322   


Q ss_pred             EEeCCCcceEEEee
Q 021480           93 NIDAPNLQFFDIGG  106 (312)
Q Consensus        93 ~i~~p~L~~L~~~~  106 (312)
                      .-..++|++|.+.+
T Consensus       638 ~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  638 LLELQSLRVLRLPR  651 (889)
T ss_pred             hhhcccccEEEeec
Confidence            22246777777765

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=85.31  E-value=1.8  Score=26.50  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             cCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021480          180 CVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML  217 (312)
Q Consensus       180 f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~  217 (312)
                      ..+|+.+.+..-.....++.-+..++++++.|+++.|.
T Consensus        13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~   50 (51)
T PF08387_consen   13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS   50 (51)
T ss_pred             hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence            46899988854444556777788899999999999885

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=85.12  E-value=0.36  Score=44.22  Aligned_cols=60  Identities=23%  Similarity=0.290  Sum_probs=37.6

Q ss_pred             cccCCcceEEEeeceeeCCCCC-CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           25 LFLCQNLIHLELFNCLLKPPST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      +..+++|..|++..+.+..... +..+++|+.|+|+++.++.-  .. +..++.|+.|++.++.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~-l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL--EG-LSTLTLLKELNLSGNL  151 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc--cc-hhhccchhhheeccCc
Confidence            4456677777777777766555 66677777777777776431  11 2334447777777664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=83.48  E-value=0.78  Score=21.01  Aligned_cols=12  Identities=50%  Similarity=0.753  Sum_probs=4.9

Q ss_pred             ccceeeecceee
Q 021480           52 NLKSLDLQHITL   63 (312)
Q Consensus        52 ~L~~L~L~~~~~   63 (312)
                      +|+.|+|++|.+
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 62/265 (23%)

Query: 14  W--KGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENL 71
           W          + L + Q L++    N   +   +      + S+        Q     L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--------QAELRRL 237

Query: 72  ISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFDIG----------GVFDDVTFENTFHLA 120
           + S P  E   L+        N+ +A     F++            V D ++   T H++
Sbjct: 238 LKSKP-YEN-CLLVLL-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 121 LVSIGLYVNVKNDQAMGPGNSCKLLRFFVH-----LPHIRRLEIQSYFLKYLAIGNVPSR 175
           L          +   + P     LL  ++      LP     E+ +       +  +   
Sbjct: 291 L--------DHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNP--RRLSIIAES 336

Query: 176 L-PRPCVDLNYLSIRINFNDLEENLAALCLLRSSPN-LQEL-EMLAR-PEETGI--GVLT 229
           +        N+    +N + L   + +  L    P   +++ + L+  P    I   +L+
Sbjct: 337 IRDGLATWDNWK--HVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 230 NFW------EVDHWTSLFSQLRMVK 248
             W      +V    +   +  +V+
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVE 418

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 26/94 (27%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 21  VPSSLFLCQNLIHLELFNCLLK---PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT 77
           VP     C  L  L L +       P  T    R LK LDL     S ++ E+L + S +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 78  LERLTLM--NFDGF---THLNIDAPNLQFFDIGG 106
           L  L L   NF G             LQ   +  
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 29/211 (13%), Positives = 54/211 (25%), Gaps = 31/211 (14%)

Query: 28  CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL-- 83
              L  L L    L     +   G + LK L      +S  +    + +  TLE L L  
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGS 138

Query: 84  -----MNFDGFTHLNIDAPNLQFFDIGG----VFDDVTFENTFHLALVSIGLYVNVKNDQ 134
                +              L+  D               +      +S+ L  N     
Sbjct: 139 NHISSIKLPKGFPT----EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 135 AMGPGNSCKLL-----------RFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 183
             G  +S                 F  L +     +     + +   ++   +     ++
Sbjct: 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

Query: 184 NYLSIRINFNDLEENLAALCLLRSSPNLQEL 214
           +  SI +  +      +          LQEL
Sbjct: 255 SVESINLQKHYFFNISSN--TFHCFSGLQEL 283

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 21  VPSSLFLCQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTL 78
           +PS L     L  L L     +     +   F +L  L ++  T   ++    + +   L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 79  ERLTL 83
             L L
Sbjct: 353 RELDL 357

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 32/203 (15%), Positives = 53/203 (26%), Gaps = 26/203 (12%)

Query: 23  SSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81
            +L   + L  L L        P  F     ++ LDL +  L  +    LI   P LE L
Sbjct: 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323

Query: 82  TLMNF---DGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGP 138
              N     G   L      L+   I     D          +   GL            
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIER-GADEQGMEDEEGLVSQRGLI----------- 371

Query: 139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRI--NFNDLE 196
                          +  + +    +   ++ ++ + L     D   + +       DL 
Sbjct: 372 -------ALAQGCQELEYMAVYVSDITNESLESIGTYLKN-LCDFRLVLLDREERITDLP 423

Query: 197 ENLAALCLLRSSPNLQELEMLAR 219
            +     LL     L+      R
Sbjct: 424 LDNGVRSLLIGCKKLRRFAFYLR 446

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 37/199 (18%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 29  QNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86
            +L HL+L +  L     S F    +LK L+L           +L  +   L+ L + N 
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133

Query: 87  DGFTHLNIDA----PNLQFFDIGG----VFDDVTFENTFHLALVSIGLYVNVKNDQAMGP 138
           + F+ +         +L   +I       +   + ++   +  ++  L+++         
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT--LHLS--------- 182

Query: 139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEEN 198
            ++  L  F   L  +R LE++   L        P  +      +  L+ R +    E  
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 199 LAALCLLRSSPNLQELEML 217
              L LLR    L E+E  
Sbjct: 241 NELLKLLRYILELSEVEFD 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.03
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.03
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.02
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.99
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.99
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.98
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.96
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.84
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.74
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.71
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.7
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.68
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.68
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.67
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.61
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.6
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.6
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.55
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.49
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.48
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.48
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.43
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.38
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.35
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.31
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.2
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.2
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.16
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.02
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.88
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.83
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.78
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.73
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.72
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.63
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.29
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.21
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.8
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	85.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.53

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.48  E-value=3.7e-14  Score=124.07  Aligned_cols=193  Identities=19%  Similarity=0.184  Sum_probs=122.9

Q ss_pred             CCCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            3 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         3 ~~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      ..+|++|+++....  ..+|..++.+++|+.|+|++|.+.. |..+..+++|++|+|++|.++  .++..+..++.|++|
T Consensus        80 ~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence            36788888865543  3899999999999999999998765 566889999999999999986  356668899999999


Q ss_pred             eeeccCCceeEE------------EeCCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHH
Q 021480           82 TLMNFDGFTHLN------------IDAPNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR  146 (312)
Q Consensus        82 ~l~~~~~~~~~~------------i~~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~  146 (312)
                      ++.+|.....+.            -..++|+.|.+.++ +..+  .+..+++|+.++++.+....         .+   .
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---------l~---~  223 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---------LG---P  223 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC---------CC---G
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc---------Cc---h
Confidence            999986543221            12566777777663 2211  24556677777665432110         00   1


Q ss_pred             HhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          147 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       147 ~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      -+..+++|+.|+++.+.+    .+..|..+. .+++|++|.+..+....    .++..+..+++|+.|++..+.
T Consensus       224 ~l~~l~~L~~L~Ls~n~~----~~~~p~~~~-~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTA----LRNYPPIFG-GRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             GGGGCTTCCEEECTTCTT----CCBCCCCTT-CCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCT
T ss_pred             hhccCCCCCEEECcCCcc----hhhhHHHhc-CCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCC
Confidence            245566777777765433    222332222 35566666663321111    133345666777777776543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.24  E-value=9.7e-11  Score=103.25  Aligned_cols=182  Identities=20%  Similarity=0.211  Sum_probs=113.5

Q ss_pred             ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--
Q 021480           18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--   93 (312)
Q Consensus        18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--   93 (312)
                      ...+|..+.  ++|+.|++++|.+..  +..+..+++|++|+++++.+++. ....+..++.|++|++++|.... +.  
T Consensus        43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  118 (353)
T 2z80_A           43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSN-LSSS  118 (353)
T ss_dssp             CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSS-CCHH
T ss_pred             ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCc-CCHh
Confidence            346676554  478888888887654  23577888888888888876542 12346778888888888774321 11  


Q ss_pred             -E-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhh
Q 021480           94 -I-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKY  166 (312)
Q Consensus        94 -i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~  166 (312)
                       + ..++|++|.+.++ +..    ..+..+++|+.++++.+.....        ..  ...+.++++++.|++..+.+. 
T Consensus       119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------~~--~~~~~~l~~L~~L~l~~n~l~-  187 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK--------IQ--RKDFAGLTFLEELEIDASDLQ-  187 (353)
T ss_dssp             HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--------EC--TTTTTTCCEEEEEEEEETTCC-
T ss_pred             HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc--------cC--HHHccCCCCCCEEECCCCCcC-
Confidence             1 2467888888763 222    2356789999999875421110        00  123567889999999877552 


Q ss_pred             hcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCC
Q 021480          167 LAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE  222 (312)
Q Consensus       167 l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~  222 (312)
                         +..+..+. .+++|++|.+..+..  ..+  -..++..+++|+.|++..+...
T Consensus       188 ---~~~~~~l~-~l~~L~~L~l~~n~l--~~~--~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          188 ---SYEPKSLK-SIQNVSHLILHMKQH--ILL--LEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             ---EECTTTTT-TCSEEEEEEEECSCS--TTH--HHHHHHHTTTEEEEEEESCBCT
T ss_pred             ---ccCHHHHh-ccccCCeecCCCCcc--ccc--hhhhhhhcccccEEECCCCccc
Confidence               22233332 367788887754432  221  2335567899999999887543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.22  E-value=3.2e-11  Score=106.32  Aligned_cols=251  Identities=18%  Similarity=0.152  Sum_probs=140.6

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      +++++|+++...  ...+|. .+..+++|+.|++++|.+..  +..+.++++|++|+++++.+++- ....+..+++|++
T Consensus        52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            367777775443  335666 57788999999999997764  44578899999999999987642 2344678899999


Q ss_pred             eeeeccCCce--e--EEEeCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecC-CccCCC------------
Q 021480           81 LTLMNFDGFT--H--LNIDAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKN-DQAMGP------------  138 (312)
Q Consensus        81 L~l~~~~~~~--~--~~i~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~-~~~~~~------------  138 (312)
                      |++.++....  .  .--..++|+.|.+.++  +..+   .+..+++|++++++.+..... ...+..            
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            9998874221  1  1113467888888774  2222   245677777777764321100 000000            


Q ss_pred             CcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       139 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      .....-..++..+++++.|+++.+.+.........  .......++.+.+....-....+..++..+..+++|+.|++..
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccc--cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence            00000012334466677777766654322111110  0112445666666433333344455777788899999999877


Q ss_pred             ccCCCCCcccccccccccccccccCceEEEEEe--EecchhHHHHHHHHHcc
Q 021480          219 RPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSN  268 (312)
Q Consensus       219 ~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~  268 (312)
                      +....   .+..      .-...++|+.+.+.+  +.+....+..+...+++
T Consensus       287 N~l~~---i~~~------~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          287 NQLKS---VPDG------IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             SCCCC---CCTT------TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             CCCCc---cCHH------HHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence            64321   0000      001246788888874  44444445555444444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.19  E-value=3.4e-11  Score=112.40  Aligned_cols=212  Identities=25%  Similarity=0.212  Sum_probs=133.3

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++++|+++.+... .-.|..+..+++|++|++++|.+..  +..+.++++|++|+++++.+++. ....+..+++|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence            46788887655432 2235667889999999999997764  45688999999999999988653 33457889999999


Q ss_pred             eeeccCCce----eEEEeCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecCCccCCCC-------------
Q 021480           82 TLMNFDGFT----HLNIDAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPG-------------  139 (312)
Q Consensus        82 ~l~~~~~~~----~~~i~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~-------------  139 (312)
                      ++++|....    ..--..++|+.|.+.++  ...+   .+..+++|++++++.+...... +...+             
T Consensus       104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECS
T ss_pred             ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEecccC
Confidence            999875321    11113467888888774  2222   3556778888877643221100 00000             


Q ss_pred             cchhH-HHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          140 NSCKL-LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       140 ~~~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      ....+ ..++..+++++.|++..+.+.....  .+..+...+.+|++|.+..+.........+...+..+++|+.+.+..
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQF--SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCC--CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred             cccccchhhHhhcccccEEEccCCccccccc--cccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence            00011 1234567889999988776532211  11122334778999998544323334445777788899999999987


Q ss_pred             cc
Q 021480          219 RP  220 (312)
Q Consensus       219 ~~  220 (312)
                      +.
T Consensus       261 ~~  262 (549)
T 2z81_A          261 CT  262 (549)
T ss_dssp             CE
T ss_pred             cc
Confidence            64

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.18  E-value=4.3e-10  Score=104.85  Aligned_cols=237  Identities=15%  Similarity=0.099  Sum_probs=149.9

Q ss_pred             CcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE
Q 021480           16 GQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN   93 (312)
Q Consensus        16 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~   93 (312)
                      .....+|..+.  ++|++|++++|.+..  +..+.++++|++|+++++.+++. .+..+..++.|++|++++|.......
T Consensus        15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~   91 (549)
T 2z81_A           15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSS   91 (549)
T ss_dssp             SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred             CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCH
Confidence            34467888765  789999999998764  45789999999999999988642 22457899999999999885322110


Q ss_pred             ---EeCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021480           94 ---IDAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK  165 (312)
Q Consensus        94 ---i~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  165 (312)
                         -..++|++|.++++ +..    ..+.++++|+.++++.+.....        .+  ...+.++++++.|++..+.+.
T Consensus        92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--------~~--~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--------IR--RIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--------EC--TTTTTTCCEEEEEEEEETTCC
T ss_pred             HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--------cC--HhhhhcccccCeeeccCCccc
Confidence               13478999999874 221    2366899999999976431110        00  123567899999999987552


Q ss_pred             hhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCce
Q 021480          166 YLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLR  245 (312)
Q Consensus       166 ~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~  245 (312)
                          +..+..+. .+.+|++|.+..+...  .+  -..++..+++|+.|++..+........+  .+    ......+|+
T Consensus       162 ----~~~~~~l~-~l~~L~~L~l~~n~~~--~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~----~~~~~~~L~  226 (549)
T 2z81_A          162 ----NYQSQSLK-SIRDIHHLTLHLSESA--FL--LEIFADILSSVRYLELRDTNLARFQFSP--LP----VDEVSSPMK  226 (549)
T ss_dssp             ----EECTTTTT-TCSEEEEEEEECSBST--TH--HHHHHHSTTTBSEEEEESCBCTTCCCCC--CS----SCCCCCCCC
T ss_pred             ----ccChhhhh-ccccCceEecccCccc--cc--chhhHhhcccccEEEccCCccccccccc--cc----hhhhhhccc
Confidence                22333333 3677888887544322  11  2234577999999999987543110000  00    011246788


Q ss_pred             EEEEEeEecchhHHHHHHHHHccCcccceeEEecC
Q 021480          246 MVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA  280 (312)
Q Consensus       246 ~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~  280 (312)
                      .+.+.+-.-......-+...+.+.+.|+.+.+..+
T Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC  261 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred             ceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence            88877543333333333334556667777766544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.17  E-value=3.3e-12  Score=111.67  Aligned_cols=192  Identities=15%  Similarity=0.145  Sum_probs=133.9

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHH---------Hh
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENL---------IS   73 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l---------l~   73 (312)
                      .+++.|+++.+..  ..+|..+..+++|+.|+|++|.+.. |..+..+++|+.|++++|.+.+. ++..         +.
T Consensus       104 ~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          104 SHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQ  180 (328)
T ss_dssp             TTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEE
T ss_pred             CCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhc
Confidence            4678888865543  3889999999999999999998765 55688999999999999865432 1111         34


Q ss_pred             CCcccceeeeeccCCceeEE---EeCCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHH
Q 021480           74 SSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF  147 (312)
Q Consensus        74 ~cp~Le~L~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      +++.|+.|++.+|... .+.   -..++|+.|.+.++ +..+  .+..+++|+.++++.+.....        .   ...
T Consensus       181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~--------~---p~~  248 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--------Y---PPI  248 (328)
T ss_dssp             ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB--------C---CCC
T ss_pred             cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh--------h---HHH
Confidence            5999999999988532 111   13578999999984 2222  366889999999975432211        1   123


Q ss_pred             hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      ++.+++|+.|++..+..    .+..|..+. .+++|++|.++.+....    .++..+..+++|+.+.+...
T Consensus       249 ~~~l~~L~~L~L~~n~~----~~~~p~~~~-~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSN----LLTLPLDIH-RLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTCCCCCCEEECTTCTT----CCBCCTTGG-GCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGG
T ss_pred             hcCCCCCCEEECCCCCc----hhhcchhhh-cCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHH
Confidence            56789999999987643    334443333 47889988885432211    36777899999999988543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.17  E-value=1.6e-11  Score=107.87  Aligned_cols=76  Identities=14%  Similarity=0.111  Sum_probs=41.4

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|++.....  ..+|. +..+++|++|++++|.+...+.+..+++|++|+++++.+++-  + .+..++.|++|++.
T Consensus        45 ~L~~L~l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           45 SITKLVVAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLN  118 (347)
T ss_dssp             TCSEEECCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECT
T ss_pred             cccEEEEeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECc
Confidence            345555533221  23332 555666666666666655433356666666666666665431  1 25566666666666


Q ss_pred             cc
Q 021480           85 NF   86 (312)
Q Consensus        85 ~~   86 (312)
                      +|
T Consensus       119 ~n  120 (347)
T 4fmz_A          119 ED  120 (347)
T ss_dssp             TS
T ss_pred             CC
Confidence            55

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.17  E-value=8.3e-13  Score=115.58  Aligned_cols=184  Identities=17%  Similarity=0.228  Sum_probs=105.0

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++.|++....  ....+..++.+++|+.|++++|.+..   +..+..+++|++|++++|.+++.. ...++.||.|++
T Consensus        70 ~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSE
T ss_pred             ccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH-HHHHhcCCCCCE
Confidence            567777764332  22444557789999999999998753   334678999999999999987654 445678999999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC-CccEEEE
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRLEI  159 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l  159 (312)
                      |++.+|..+...              .+. ..+..+++|++++++.+...         ....+...+..++ +|++|++
T Consensus       147 L~L~~~~~l~~~--------------~l~-~~~~~~~~L~~L~l~~~~~l---------~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          147 LNLSGCSGFSEF--------------ALQ-TLLSSCSRLDELNLSWCFDF---------TEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBSCCHH--------------HHH-HHHHHCTTCCEEECCCCTTC---------CHHHHHHHHHHSCTTCCEEEC
T ss_pred             EECCCCCCCCHH--------------HHH-HHHhcCCCCCEEcCCCCCCc---------ChHHHHHHHHhcccCCCEEEe
Confidence            999998543210              011 11334566666666543111         1112234455666 6777776


Q ss_pred             eeeehhhhcccCCCCCCCcccCCcceEEEEEEc-CChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~-~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      .++... +.....+. ....+++|++|.+..+. ....    ....+..+|+|+.|++..+.
T Consensus       203 ~~~~~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          203 SGYRKN-LQKSDLST-LVRRCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             CSCGGG-SCHHHHHH-HHHHCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCT
T ss_pred             CCCccc-CCHHHHHH-HHhhCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCC
Confidence            655210 00011111 11135566666664332 1111    22234566777777776553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.11  E-value=9.5e-11  Score=110.31  Aligned_cols=62  Identities=11%  Similarity=0.203  Sum_probs=45.8

Q ss_pred             ccCCcceEEEeeceeeCCCC------CCCCCcccceeeecceeeC---hHHHHHHHhCCcccceeeeeccC
Q 021480           26 FLCQNLIHLELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        26 ~~~~~L~~L~L~~~~l~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ..|++|++|+|++|.+.+..      ...++++|++|+++++.++   .+.+..++..||+|++|++.+|.
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            35788888888888765421      1246788888888888765   45678888889999999988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.11  E-value=2e-11  Score=105.97  Aligned_cols=238  Identities=16%  Similarity=0.088  Sum_probs=147.5

Q ss_pred             CCceEEEEEecCCc-ceecCCCcccCCcceEEEeec-eeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021480            4 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFN-CLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE   79 (312)
Q Consensus         4 ~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le   79 (312)
                      .+|++|+++..... .+.+|..+..+++|++|++++ +.+.  .|..+..+++|++|+++++.+++. ++..+..++.|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence            67889998755432 237899999999999999995 6554  366788999999999999988633 344578899999


Q ss_pred             eeeeeccCCceeEE---EeCCCcceEEEeecc-c---ceeeecCC-cceEEEEeEEEeecCCccCCCCcchhHHHHhhcC
Q 021480           80 RLTLMNFDGFTHLN---IDAPNLQFFDIGGVF-D---DVTFENTF-HLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL  151 (312)
Q Consensus        80 ~L~l~~~~~~~~~~---i~~p~L~~L~~~~~~-~---~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  151 (312)
                      +|++++|.....+.   -..++|+.|.+.++. .   +..+..++ +|+.++++.+......           ...+..+
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-----------~~~~~~l  197 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----------PPTFANL  197 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-----------CGGGGGC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-----------ChHHhCC
Confidence            99999874321111   135789999988742 1   12345666 8999998755432110           1224455


Q ss_pred             CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccc
Q 021480          152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNF  231 (312)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~  231 (312)
                      + ++.|+++.+.+.    +..+..+. .+++|+.|.+..+.-...    ++ .+..+++|+.|++..+.....  .+  .
T Consensus       198 ~-L~~L~Ls~N~l~----~~~~~~~~-~l~~L~~L~L~~N~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~--~p--~  262 (313)
T 1ogq_A          198 N-LAFVDLSRNMLE----GDASVLFG-SDKNTQKIHLAKNSLAFD----LG-KVGLSKNLNGLDLRNNRIYGT--LP--Q  262 (313)
T ss_dssp             C-CSEEECCSSEEE----ECCGGGCC-TTSCCSEEECCSSEECCB----GG-GCCCCTTCCEEECCSSCCEEC--CC--G
T ss_pred             c-ccEEECcCCccc----CcCCHHHh-cCCCCCEEECCCCceeee----cC-cccccCCCCEEECcCCcccCc--CC--h
Confidence            5 899998877653    22222222 367888888743321110    22 256788999998877643210  00  0


Q ss_pred             cccccccccccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecC
Q 021480          232 WEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPA  280 (312)
Q Consensus       232 w~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~  280 (312)
                      +     -....+|+.+.+.+  +.|.-...       .+.+.|+.+.+..+
T Consensus       263 ~-----l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          263 G-----LTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANN  301 (313)
T ss_dssp             G-----GGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSS
T ss_pred             H-----HhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCC
Confidence            0     02246788887773  33321110       34556666655544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.09  E-value=1.7e-12  Score=118.60  Aligned_cols=208  Identities=14%  Similarity=0.111  Sum_probs=103.1

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC------CCCCCCCcccceeeecceeeChHHHHHHHhCCc--
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLSQDVFENLISSSP--   76 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp--   76 (312)
                      .+++|+++........+...+..+++|++|++++|.+..      +..+..+++|++|+++++.+++..+..+...++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            456666654432212222223456777777777776652      123455677777777777776655555555555  


Q ss_pred             --ccceeeeeccCCce----e---EEEeCCCcceEEEeecc-cc-----ee---eecCCcceEEEEeEEEeecCCccCCC
Q 021480           77 --TLERLTLMNFDGFT----H---LNIDAPNLQFFDIGGVF-DD-----VT---FENTFHLALVSIGLYVNVKNDQAMGP  138 (312)
Q Consensus        77 --~Le~L~l~~~~~~~----~---~~i~~p~L~~L~~~~~~-~~-----~~---~~~~~~L~~l~l~~~~~~~~~~~~~~  138 (312)
                        .|++|++++|....    .   .--..++|++|.++++. ..     +.   ....++|++++++.+....       
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-------  156 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA-------  156 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-------
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH-------
Confidence              57777777764221    0   00134577777776632 11     00   1123467777765432110       


Q ss_pred             CcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       139 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      .....+...+..++++++|+++.+.+...........+....++|++|.+..+.-....+..++..+..+++|+.|++..
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence            01122344455667777777766543211000000001111335666666333222233334555566666666666655


Q ss_pred             c
Q 021480          219 R  219 (312)
Q Consensus       219 ~  219 (312)
                      +
T Consensus       237 n  237 (461)
T 1z7x_W          237 N  237 (461)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.07  E-value=2.1e-11  Score=104.18  Aligned_cols=223  Identities=13%  Similarity=0.059  Sum_probs=136.2

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +++...+...+|..+  .++|+.|+++++.+..  +..+..+++|++|+++++.+++. ....+..++.|++|++.++..
T Consensus        16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             EECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCC
Confidence            334444445666654  3688999999987764  34578899999999999877542 133567889999999988863


Q ss_pred             ceeEEE----eCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           89 FTHLNI----DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        89 ~~~~~i----~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      +..+..    ..++|+.|.+.++ +..   ..+..+++|+.++++.+.....         +  ...+..+++|+.|++.
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~--~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---------P--DDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECC
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc---------C--HhHhccCCCccEEECC
Confidence            332211    2468888888873 222   2356788999998875432110         0  1235678899999998


Q ss_pred             eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCccccccccccccccc
Q 021480          161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSL  240 (312)
Q Consensus       161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~  240 (312)
                      .+.+..+.    +..+. .+++|++|.+..+.-...    .+..+..+++|+.|++..+.....   +.. +     -..
T Consensus       162 ~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~-----~~~  223 (285)
T 1ozn_A          162 GNRISSVP----ERAFR-GLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL---PTE-A-----LAP  223 (285)
T ss_dssp             SSCCCEEC----TTTTT-TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC---CHH-H-----HTT
T ss_pred             CCcccccC----HHHhc-CccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC---CHH-H-----ccc
Confidence            87653221    11122 367888888854321111    244567889999999877643210   000 0     022


Q ss_pred             ccCceEEEEEe--EecchhHHHHHHHH
Q 021480          241 FSQLRMVKIVG--ISGIRSELEFIKFV  265 (312)
Q Consensus       241 ~~~L~~v~i~~--~~~~~~~~~~~~~l  265 (312)
                      ..+|+.+.+.+  +........+.+++
T Consensus       224 l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CcccCEEeccCCCccCCCCcHHHHHHH
Confidence            46888888874  44444444555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=1.7e-11  Score=109.52  Aligned_cols=248  Identities=12%  Similarity=0.042  Sum_probs=147.0

Q ss_pred             eecCCCcccCCcceEEEeeceeeCCC------CCCCCCcccceeeecceeeC---h------HHHHHHHhCCcccceeee
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKPP------STFKGFRNLKSLDLQHITLS---Q------DVFENLISSSPTLERLTL   83 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~l   83 (312)
                      ..++..+..+++|+.|+|++|.+...      ..+..+++|++|+|++|.+.   +      ..+...+..++.|++|++
T Consensus        22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            45666677788888888888877541      23567888888888886432   2      123344578888888888


Q ss_pred             eccCCce----e---EEEeCCCcceEEEeec-ccc---ee----eecC---------CcceEEEEeEEEeecCCccCCCC
Q 021480           84 MNFDGFT----H---LNIDAPNLQFFDIGGV-FDD---VT----FENT---------FHLALVSIGLYVNVKNDQAMGPG  139 (312)
Q Consensus        84 ~~~~~~~----~---~~i~~p~L~~L~~~~~-~~~---~~----~~~~---------~~L~~l~l~~~~~~~~~~~~~~~  139 (312)
                      ++|....    .   .--..++|++|.++++ +..   ..    +..+         ++|+.++++.+...       ..
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-------~~  174 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-------NG  174 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-------GG
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-------cH
Confidence            8775321    0   1124578888888773 211   11    2223         88998888654311       01


Q ss_pred             cchhHHHHhhcCCCccEEEEeeeehhhhccc-CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          140 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG-NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       140 ~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~-~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      ..+.+...+..+++|++|.+..+.+...... ..+..+ ..+++|++|.++.+.-...+...++..+..+|+|+.|.+..
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            2333345667788999999987755310000 011122 24778888888544322233345777788899999998876


Q ss_pred             ccCCCCCccccccccccccc----ccccCceEEEEEeEecch-hHHHHHHHHHccCcccceeEEecCC
Q 021480          219 RPEETGIGVLTNFWEVDHWT----SLFSQLRMVKIVGISGIR-SELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       219 ~~~~~~~~~~~~~w~~~~~~----~~~~~L~~v~i~~~~~~~-~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      +.....+.       ...+.    +..++|+.+.+.+-.-.. +...+...+..+.+.|+.+.+..+.
T Consensus       254 n~i~~~~~-------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          254 CLLSARGA-------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CCCCHHHH-------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCchhhH-------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            54221000       00011    114788888887533222 2234555555778999999988776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.06  E-value=4.1e-11  Score=109.32  Aligned_cols=191  Identities=18%  Similarity=0.165  Sum_probs=109.4

Q ss_pred             CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+++.+..  ..+ |..+..+++|+.|+|++|.+..  +..+.++++|+.|+|+++.++.- ....+..++.|++
T Consensus        75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCE
Confidence            3567777754432  234 4556778889999999887654  45677888999999988877532 1234667888888


Q ss_pred             eeeeccCCceeEEE----eCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcC
Q 021480           81 LTLMNFDGFTHLNI----DAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL  151 (312)
Q Consensus        81 L~l~~~~~~~~~~i----~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l  151 (312)
                      |++++|... .+..    ..++|+.|.+.+.  ...+   .+..+++|+.++++.+....         .+    -+..+
T Consensus       152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~----~~~~l  217 (452)
T 3zyi_A          152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------MP----NLTPL  217 (452)
T ss_dssp             EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---------CC----CCTTC
T ss_pred             EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---------cc----ccccc
Confidence            888877532 1211    2467777877752  1111   24567778888776432210         01    13456


Q ss_pred             CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ++|+.|+++.+.+..+    .+..+. .+++|++|.+..+.-...    .+..+..+++|+.|++..+.
T Consensus       218 ~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEI----RPGSFH-GLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             TTCCEEECTTSCCSEE----CGGGGT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred             ccccEEECcCCcCccc----Cccccc-CccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCc
Confidence            6777777766654321    111111 245666666532211100    12234566677777666553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.06  E-value=1.7e-10  Score=108.60  Aligned_cols=238  Identities=17%  Similarity=0.139  Sum_probs=134.0

Q ss_pred             cCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc---eeEEEeC
Q 021480           21 VPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF---THLNIDA   96 (312)
Q Consensus        21 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~---~~~~i~~   96 (312)
                      .+..+..+++|+.|.+..+.... +..+..+++|++|+|++|.+++..+..++..||+|+.|++.++...   ..+.-..
T Consensus       262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~  341 (592)
T 3ogk_B          262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC  341 (592)
T ss_dssp             SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred             HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence            33445556677777666643222 3334578899999999988888777788889999999998844221   1111235


Q ss_pred             CCcceEEEe-e---------c--ccc--e-e-eecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           97 PNLQFFDIG-G---------V--FDD--V-T-FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        97 p~L~~L~~~-~---------~--~~~--~-~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      ++|+.|.+. |         .  +..  + . ...+++|++++++.+ ..         ....+..+...+++|+.|++.
T Consensus       342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l---------~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DI---------TNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CC---------CHHHHHHHHHHCCSCCEEEEE
T ss_pred             CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-Cc---------cHHHHHHHHhhCCCCcEEEEe
Confidence            788888888 2         1  111  1 1 235788888888321 11         222333444458888888886


Q ss_pred             ee----ehhhhccc-CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480          161 SY----FLKYLAIG-NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD  235 (312)
Q Consensus       161 ~~----~~~~l~~~-~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~  235 (312)
                      ..    .+...+.. ..+ .+...+++|++|.+..+.....+ ..+..+...||+|+.|.+..+.....   ....+   
T Consensus       412 ~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~---  483 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVRWMLLGYVGESDE---GLMEF---  483 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCH-HHHHHHHHSCTTCCEEEECSCCSSHH---HHHHH---
T ss_pred             ecCCCccccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccH-HHHHHHHHhCccceEeeccCCCCCHH---HHHHH---
Confidence            32    11100000 000 01123678888888543211111 23555666788888888865532100   00000   


Q ss_pred             cccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          236 HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       236 ~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                       . ...++|+.+.+.+..-..   .-+..+..+.+.|+.+.+..+.
T Consensus       484 -~-~~~~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          484 -S-RGCPNLQKLEMRGCCFSE---RAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             -H-TCCTTCCEEEEESCCCBH---HHHHHHHHHCSSCCEEEEESCB
T ss_pred             -H-hcCcccCeeeccCCCCcH---HHHHHHHHhcCccCeeECcCCc
Confidence             0 113688888888754221   2234455677888888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.06  E-value=1.4e-10  Score=112.77  Aligned_cols=68  Identities=24%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             ecCCCccc-CCcceEEEeeceeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           20 KVPSSLFL-CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        20 ~lp~~l~~-~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      .+|..++. |++|+.|++++|.+.  .|..+..+++|++|++++|.+.+......+..++.|++|++.+|.
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            56666655 477888888877664  245567778888888888776543223346777888888887763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.05  E-value=1.3e-10  Score=106.30  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|++....  ...+|. +..+++|++|++++|.+...+.+.++++|+.|+++++.+.+..  . +..++.|++|++.
T Consensus        47 ~l~~L~l~~~~--i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLG--IKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECC
T ss_pred             cccEEecCCCC--CccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECC
Confidence            45555553222  224553 5567777777777777665333667777777777777665421  1 6677777777777


Q ss_pred             ccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEE
Q 021480           85 NFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSI  124 (312)
Q Consensus        85 ~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l  124 (312)
                      +|.....- --..++|+.|.+.++ +..+ .+..+++|+.+.+
T Consensus       121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  163 (466)
T 1o6v_A          121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF  163 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred             CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence            66321100 012356666666652 1111 1334555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.05  E-value=5.9e-11  Score=111.74  Aligned_cols=62  Identities=24%  Similarity=0.353  Sum_probs=46.4

Q ss_pred             cccCCcceEEEeeceeeCCC--CC----CCCCcccceeeeccee--eChHHHHHHHhCCcccceeeeecc
Q 021480           25 LFLCQNLIHLELFNCLLKPP--ST----FKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~--~~----~~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ...|++|++|+|++|.+...  ..    ...+++|++|+++++.  ++.+.+..++..||+|+.|++.+|
T Consensus       152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            34678888888888876441  11    2367789999998885  666778888888999999998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.05  E-value=4.9e-11  Score=104.24  Aligned_cols=209  Identities=13%  Similarity=0.152  Sum_probs=136.6

Q ss_pred             CcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeec
Q 021480           29 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGV  107 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~  107 (312)
                      ++++.|+++++.+.. ++.+..+++|+.|+++++.+++..+...+..||.|++|++.+|....                .
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------~  133 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------P  133 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------H
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------H
Confidence            789999999998765 44567899999999999999888788999999999999999884321                1


Q ss_pred             ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeee-ehhhhcccCCCCCCCcccC-Ccce
Q 021480          108 FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY-FLKYLAIGNVPSRLPRPCV-DLNY  185 (312)
Q Consensus       108 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~-~~~~l~~~~~~~~l~~~f~-~L~~  185 (312)
                      . .-.+..+++|+.++++.+...         ....+..++.++++|++|++..+ .+...   ..+..+ ..++ +|++
T Consensus       134 ~-~~~l~~~~~L~~L~L~~~~~l---------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~-~~l~~~L~~  199 (336)
T 2ast_B          134 I-VNTLAKNSNLVRLNLSGCSGF---------SEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAV-AHVSETITQ  199 (336)
T ss_dssp             H-HHHHTTCTTCSEEECTTCBSC---------CHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHH-HHSCTTCCE
T ss_pred             H-HHHHhcCCCCCEEECCCCCCC---------CHHHHHHHHhcCCCCCEEcCCCCCCcChH---HHHHHH-HhcccCCCE
Confidence            1 112346889999988754211         12234566788999999999877 44210   011111 2477 9999


Q ss_pred             EEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecc-hhHHHHHHH
Q 021480          186 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI-RSELEFIKF  264 (312)
Q Consensus       186 L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~-~~~~~~~~~  264 (312)
                      |.+..+.....+ ..++..+..+|+|+.|++..+....... .     ..  -...++|+.+.+.+..+. ...+    .
T Consensus       200 L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~-----~~--l~~l~~L~~L~l~~~~~~~~~~~----~  266 (336)
T 2ast_B          200 LNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDC-F-----QE--FFQLNYLQHLSLSRCYDIIPETL----L  266 (336)
T ss_dssp             EECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGG-G-----GG--GGGCTTCCEEECTTCTTCCGGGG----G
T ss_pred             EEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHH-H-----HH--HhCCCCCCEeeCCCCCCCCHHHH----H
Confidence            999654211111 2577788899999999997765210000 0     00  012367888877765322 1111    1


Q ss_pred             HHccCcccceeEEecC
Q 021480          265 VLSNSPVLETMTIKPA  280 (312)
Q Consensus       265 ll~~~~~Le~~~i~~~  280 (312)
                      .+.+.+.|+.+.+..+
T Consensus       267 ~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             HHhcCCCCCEEeccCc
Confidence            2356788888888755

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.05  E-value=7.4e-11  Score=100.80  Aligned_cols=193  Identities=20%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccce
Q 021480            5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLER   80 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++|+++...  ...+|. .+..+++|+.|++++|.+..  +..+.++++|++|+++++. ++.- ....+..++.|++
T Consensus        33 ~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~  109 (285)
T 1ozn_A           33 ASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT  109 (285)
T ss_dssp             TCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred             CceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence            44555543222  223443 34556667777776665543  3445666777777776664 4321 1223456667777


Q ss_pred             eeeeccCCceeEE---EeCCCcceEEEeec-ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480           81 LTLMNFDGFTHLN---IDAPNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  153 (312)
Q Consensus        81 L~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  153 (312)
                      |++.+|.......   -..++|+.|.+.++ +..+   .+..+++|+.++++.+....         .+  ...+..+++
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~--~~~~~~l~~  178 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---------VP--ERAFRGLHS  178 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE---------EC--TTTTTTCTT
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc---------cC--HHHhcCccc
Confidence            7776654221000   02356666666653 2211   23456666666665332110         00  012445666


Q ss_pred             ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      |+.|++..+.+.    +..+..+. .+++|+.|.+..+.-...    ....+..+++|+.|++..++
T Consensus       179 L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          179 LDRLLLHQNRVA----HVHPHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCEEECCSSCCC----EECTTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSC
T ss_pred             cCEEECCCCccc----ccCHhHcc-CcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCC
Confidence            677766665442    11122222 255666666633211110    12334566777776665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.05  E-value=1e-11  Score=113.28  Aligned_cols=217  Identities=17%  Similarity=0.113  Sum_probs=114.0

Q ss_pred             CCceEEEEEecCCc---ceecCCCcccCCcceEEEeeceeeCC--CCCC-CCCc----ccceeeecceeeCh---HHHHH
Q 021480            4 SCVKEFILEIWKGQ---RYKVPSSLFLCQNLIHLELFNCLLKP--PSTF-KGFR----NLKSLDLQHITLSQ---DVFEN   70 (312)
Q Consensus         4 ~~v~eL~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~-~~l~----~L~~L~L~~~~~~~---~~l~~   70 (312)
                      ++++.|+++.+...   ...+|..+..+++|++|+|++|.+..  +..+ ..++    +|++|++++|.+++   ..+..
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            45777777654321   12566666777888888888887643  1111 2333    68888888888765   24566


Q ss_pred             HHhCCcccceeeeeccCCce----e----EEEeCCCcceEEEeec-ccc-------eeeecCCcceEEEEeEEEeec---
Q 021480           71 LISSSPTLERLTLMNFDGFT----H----LNIDAPNLQFFDIGGV-FDD-------VTFENTFHLALVSIGLYVNVK---  131 (312)
Q Consensus        71 ll~~cp~Le~L~l~~~~~~~----~----~~i~~p~L~~L~~~~~-~~~-------~~~~~~~~L~~l~l~~~~~~~---  131 (312)
                      .+..++.|++|++++|....    .    +.-..++|++|.+.++ +..       -.+..+++|+.++++.+....   
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            67788888888887764210    0    0001234555555442 110       012234555555554322100   


Q ss_pred             ------------CCc-------cCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEc
Q 021480          132 ------------NDQ-------AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF  192 (312)
Q Consensus       132 ------------~~~-------~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~  192 (312)
                                  ...       .+.......+...+..++++++|+++.+.+...........+...+++|++|.+..+.
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence                        000       0000011123455667788888888776543111000000111125678888875443


Q ss_pred             CChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          193 NDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       193 ~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      -...++..++..+..+++|+.|++..+.
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            3334444567777888888888887654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.04  E-value=1.9e-10  Score=102.71  Aligned_cols=235  Identities=15%  Similarity=0.097  Sum_probs=126.8

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      +++++|+++.+..  ..+|+ .+..+++|+.|++++|.+.. +.. +..+++|++|+++++.+++. ....+..++.|++
T Consensus        93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  169 (390)
T 3o6n_A           93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN  169 (390)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred             CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence            4567777654432  24444 45678888888888887765 333 57788888888888877532 1234677888888


Q ss_pred             eeeeccCCcee----------EE---------EeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecCCccCCCCc
Q 021480           81 LTLMNFDGFTH----------LN---------IDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGN  140 (312)
Q Consensus        81 L~l~~~~~~~~----------~~---------i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  140 (312)
                      |++.++.....          +.         -..++|+.|.+.++ +..+.....++|+.++++.+...         .
T Consensus       170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~---------~  240 (390)
T 3o6n_A          170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT---------D  240 (390)
T ss_dssp             EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC---------C
T ss_pred             EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc---------c
Confidence            88887642210          00         01224444444432 11122222345555555432211         0


Q ss_pred             chhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          141 SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       141 ~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                          ...+..+++++.|+++.+.+...    .+..+. .+++|++|.+..+.-  .   .++.....+|+|+.|++..+.
T Consensus       241 ----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~L~~n~l--~---~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          241 ----TAWLLNYPGLVEVDLSYNELEKI----MYHPFV-KMQRLERLYISNNRL--V---ALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             ----CGGGGGCTTCSEEECCSSCCCEE----ESGGGT-TCSSCCEEECCSSCC--C---EEECSSSCCTTCCEEECCSSC
T ss_pred             ----cHHHcCCCCccEEECCCCcCCCc----ChhHcc-ccccCCEEECCCCcC--c---ccCcccCCCCCCCEEECCCCc
Confidence                03356677888888877654311    122222 356777777743311  1   123334567888888776654


Q ss_pred             CCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          221 EETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       221 ~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      ....   +     .  .-....+|+.+.+.+-.-..-     .  +...+.|+.+.+..++
T Consensus       307 l~~~---~-----~--~~~~l~~L~~L~L~~N~i~~~-----~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          307 LLHV---E-----R--NQPQFDRLENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCCC---G-----G--GHHHHTTCSEEECCSSCCCCC-----C--CCTTCCCSEEECCSSC
T ss_pred             ceec---C-----c--cccccCcCCEEECCCCcccee-----C--chhhccCCEEEcCCCC
Confidence            2200   0     0  001246777777764221110     0  4567788888887765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.03  E-value=3.1e-11  Score=117.29  Aligned_cols=192  Identities=19%  Similarity=0.178  Sum_probs=105.4

Q ss_pred             CceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeCC--CCCC-CCCcccceeeecceeeChHHHH--HHHhCCcc
Q 021480            5 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE--NLISSSPT   77 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~~--~~~~-~~l~~L~~L~L~~~~~~~~~l~--~ll~~cp~   77 (312)
                      +++.|+++.+... -.+|.  .+..+++|++|+|++|.+..  +..+ ..+++|++|+++++.+++....  ..+.+|+.
T Consensus       101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            4455555332211 23555  66677777777777776543  2222 5677777777777776543222  22677888


Q ss_pred             cceeeeeccCCceeEE-EeCCCcceEEEeec-ccc-e-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480           78 LERLTLMNFDGFTHLN-IDAPNLQFFDIGGV-FDD-V-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  153 (312)
Q Consensus        78 Le~L~l~~~~~~~~~~-i~~p~L~~L~~~~~-~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  153 (312)
                      |++|++.+|....... -..++|+.|.+.++ +.. + .+.++++|+.++++.+...           ..+...+..+++
T Consensus       180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~~  248 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS-----------GDFSRAISTCTE  248 (768)
T ss_dssp             CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC-----------SCHHHHTTTCSS
T ss_pred             CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC-----------CcccHHHhcCCC
Confidence            8888887764222111 23467888877763 211 1 2567788888887643211           112345677888


Q ss_pred             ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHh-hhcCCCcceEEEEec
Q 021480          154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCL-LRSSPNLQELEMLAR  219 (312)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~-L~~~p~Le~L~l~~~  219 (312)
                      |+.|++..+.+    .+..+..   .+++|++|.+..+.-..    .++.. ...|++|+.|++..+
T Consensus       249 L~~L~Ls~n~l----~~~~~~~---~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n  304 (768)
T 3rgz_A          249 LKLLNISSNQF----VGPIPPL---PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGN  304 (768)
T ss_dssp             CCEEECCSSCC----EESCCCC---CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSS
T ss_pred             CCEEECCCCcc----cCccCcc---ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCC
Confidence            88888877654    2222221   36677777663221100    02222 233577777776554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.03  E-value=4.9e-11  Score=103.49  Aligned_cols=215  Identities=15%  Similarity=0.124  Sum_probs=127.5

Q ss_pred             CcceEEEeeceeeCC----CCCCCCCcccceeeecc-eeeChHHHHHHHhCCcccceeeeeccCCceeEE---EeCCCcc
Q 021480           29 QNLIHLELFNCLLKP----PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQ  100 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~---i~~p~L~  100 (312)
                      .+++.|+|+++.+..    |..+..+++|++|++++ +.+.+. ++..+..++.|++|++.++.....+.   -..++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            468888998887753    55678888899999885 655432 34446788889999988875432111   1346888


Q ss_pred             eEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC-CccEEEEeeeehhhhcccCCCCC
Q 021480          101 FFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRLEIQSYFLKYLAIGNVPSR  175 (312)
Q Consensus       101 ~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~l~~~~~~~~  175 (312)
                      .|.+.++ +.   +..+..+++|+.++++.+.....        .   ..-+..++ +++.|++..+.+.    +..+..
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--------~---p~~l~~l~~~L~~L~L~~N~l~----~~~~~~  193 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--------I---PDSYGSFSKLFTSMTISRNRLT----GKIPPT  193 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE--------C---CGGGGCCCTTCCEEECCSSEEE----EECCGG
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc--------C---CHHHhhhhhcCcEEECcCCeee----ccCChH
Confidence            8888763 22   12356788888888865432100        0   12244565 8888888877552    222222


Q ss_pred             CCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe--Ee
Q 021480          176 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--IS  253 (312)
Q Consensus       176 l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~  253 (312)
                      +. .+. |+.|.++.+.-..    ..+..+..+++|+.|++..+.....   ..       .-....+|+++.+.+  +.
T Consensus       194 ~~-~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~---~~-------~~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          194 FA-NLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD---LG-------KVGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             GG-GCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB---GG-------GCCCCTTCCEEECCSSCCE
T ss_pred             Hh-CCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee---cC-------cccccCCCCEEECcCCccc
Confidence            22 233 7777774321111    1345667888899888876643210   00       002246788888774  22


Q ss_pred             cchhHHHHHHHHHccCcccceeEEecCC
Q 021480          254 GIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       254 ~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      +..      ...+.+.+.|+.+.+..+.
T Consensus       258 ~~~------p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          258 GTL------PQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             ECC------CGGGGGCTTCCEEECCSSE
T ss_pred             CcC------ChHHhcCcCCCEEECcCCc
Confidence            221      1124577888888887664

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.02  E-value=5.4e-11  Score=108.12  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=70.1

Q ss_pred             CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+|+.+..  ..++ ..+..+++|+.|+|++|.+..  +..+.++++|++|+|++|.++.- ....+..++.|++
T Consensus        64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred             CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence            3456666654432  2333 456677888888888876654  34567778888888888776531 1224567778888


Q ss_pred             eeeeccCCceeEEE----eCCCcceEEEeec--cc---ceeeecCCcceEEEEeE
Q 021480           81 LTLMNFDGFTHLNI----DAPNLQFFDIGGV--FD---DVTFENTFHLALVSIGL  126 (312)
Q Consensus        81 L~l~~~~~~~~~~i----~~p~L~~L~~~~~--~~---~~~~~~~~~L~~l~l~~  126 (312)
                      |++.++.... +..    ..++|+.|.+.+.  ..   ...+..+++|+.++++.
T Consensus       141 L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          141 LWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             eeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            8887764321 111    2356777776651  11   11244567777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.02  E-value=8.3e-11  Score=107.13  Aligned_cols=35  Identities=6%  Similarity=0.193  Sum_probs=23.1

Q ss_pred             ccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          241 FSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       241 ~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      .++|+.+.+.+  +.+..      ...+.+.+.|+.+.+..++
T Consensus       370 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVP------DGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred             cccccEEECCCCccccCC------HhHhccCCcccEEEccCCC
Confidence            46788888775  22211      1234678899999998776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.01  E-value=1.6e-10  Score=105.39  Aligned_cols=185  Identities=17%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             EecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      ++.......+|..+.  ++++.|+|++|.+..  +..+.++++|+.|+|+++.+++. ....+.++++|++|++.+|...
T Consensus        60 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~  136 (452)
T 3zyi_A           60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLT  136 (452)
T ss_dssp             ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCC
Confidence            344444457777654  689999999998764  56788999999999999987642 2245688999999999988532


Q ss_pred             eeEE----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           90 THLN----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        90 ~~~~----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      . +.    -..++|+.|.+.++ +..   ..+..+++|+.++++.+.....        .+  ...+.++++|+.|+++.
T Consensus       137 ~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~--~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          137 V-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--------IS--EGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             B-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------EC--TTTTTTCTTCCEEECTT
T ss_pred             c-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc--------cC--hhhccCCCCCCEEECCC
Confidence            1 11    13578999999874 222   2356789999999875322111        00  12366789999999998


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      +.+..+     + .+. .+++|+.|.++.+.-.  +  ..+..+..+++|+.|.+..+..
T Consensus       206 n~l~~~-----~-~~~-~l~~L~~L~Ls~N~l~--~--~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          206 CNIKDM-----P-NLT-PLVGLEELEMSGNHFP--E--IRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             SCCSSC-----C-CCT-TCTTCCEEECTTSCCS--E--ECGGGGTTCTTCCEEECTTSCC
T ss_pred             Cccccc-----c-ccc-ccccccEEECcCCcCc--c--cCcccccCccCCCEEEeCCCcC
Confidence            865422     2 122 4778998888433211  1  1245678999999999977643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=2.6e-10  Score=107.66  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+++.+..  ..+|+. +..+++|+.|+|++|.+.. |+. +..+++|++|+|++|.+++. .+..+..++.|+.
T Consensus        99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  175 (597)
T 3oja_B           99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN  175 (597)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcE
Confidence            3566777654432  345544 4678888888888887765 333 57888888888888877542 2234677888888


Q ss_pred             eeeeccC
Q 021480           81 LTLMNFD   87 (312)
Q Consensus        81 L~l~~~~   87 (312)
                      |++.+|.
T Consensus       176 L~L~~N~  182 (597)
T 3oja_B          176 LQLSSNR  182 (597)
T ss_dssp             EECTTSC
T ss_pred             EECcCCC
Confidence            8887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.99  E-value=7.1e-10  Score=101.67  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             CceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            5 CVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++.|+++....  ..+ |..+..+++|+.|+|++|.+..  +..+.++++|++|+|+++.++.- ....+..++.|++|
T Consensus        33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  109 (477)
T 2id5_A           33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL  109 (477)
T ss_dssp             TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred             CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence            456666543332  244 3456677888888888886653  45677788888888888776531 12245677888888


Q ss_pred             eeeccCCceeEE---EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc
Q 021480           82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI  154 (312)
Q Consensus        82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  154 (312)
                      ++.+|.......   -..++|+.|.+.++ +.   ...+..+++|+.++++.+....         .+  ...+..+++|
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~--~~~l~~l~~L  178 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---------IP--TEALSHLHGL  178 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---------CC--HHHHTTCTTC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---------cC--hhHhcccCCC
Confidence            887764321100   12367777777763 22   1235567778887776442110         00  2335566677


Q ss_pred             cEEEEeeeeh
Q 021480          155 RRLEIQSYFL  164 (312)
Q Consensus       155 ~~L~l~~~~~  164 (312)
                      +.|++..+.+
T Consensus       179 ~~L~l~~n~i  188 (477)
T 2id5_A          179 IVLRLRHLNI  188 (477)
T ss_dssp             CEEEEESCCC
T ss_pred             cEEeCCCCcC
Confidence            7777766544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.99  E-value=9.1e-11  Score=106.87  Aligned_cols=83  Identities=22%  Similarity=0.241  Sum_probs=47.2

Q ss_pred             CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHH-HHHhCCcccc
Q 021480            4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFE-NLISSSPTLE   79 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le   79 (312)
                      ++++.|+++.+... ..+| ..+..+++|++|+|++|.+..  +..+.++++|++|++++|.+++..+. ..+..++.|+
T Consensus        54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             ccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            34566665433221 1343 345566777777777775543  44566777777777777766543222 2255666666


Q ss_pred             eeeeeccC
Q 021480           80 RLTLMNFD   87 (312)
Q Consensus        80 ~L~l~~~~   87 (312)
                      +|++.+|.
T Consensus       133 ~L~L~~n~  140 (455)
T 3v47_A          133 MLVLRDNN  140 (455)
T ss_dssp             EEECCSSB
T ss_pred             EEECCCCc
Confidence            66666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.99  E-value=3.2e-11  Score=113.96  Aligned_cols=67  Identities=24%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             ecCCC-cccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           20 KVPSS-LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        20 ~lp~~-l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      .+|.. +..+++|+.|++++|.+.. |..+..+++|++|+++++.+.+. .+..+..+|.|+.|++.+|.
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCS
T ss_pred             ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCC
Confidence            44443 4456677777777776554 44566667777777777665432 12334566666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.99  E-value=1.5e-10  Score=101.67  Aligned_cols=230  Identities=14%  Similarity=0.099  Sum_probs=142.4

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeece-eeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      +++++|+++.+..  ..+|. +..+++|+.|++++| ....++.+..+++|+.|+++++.+.+...   +..++.|++|+
T Consensus       110 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~  183 (347)
T 4fmz_A          110 TNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLS  183 (347)
T ss_dssp             TTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEE
T ss_pred             CcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEE
Confidence            4567777754332  34554 678899999999999 44555568889999999999998764321   67899999999


Q ss_pred             eeccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEE
Q 021480           83 LMNFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI  159 (312)
Q Consensus        83 l~~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l  159 (312)
                      +.+|.....- --..++|+.+.+.++ +..+ .+..+++|+.++++.+...         ..+   . +..+++++.|++
T Consensus       184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~---------~~~---~-~~~l~~L~~L~l  250 (347)
T 4fmz_A          184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT---------DLS---P-LANLSQLTWLEI  250 (347)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------CCG---G-GTTCTTCCEEEC
T ss_pred             ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC---------CCc---c-hhcCCCCCEEEC
Confidence            9987532100 113467888887773 2222 2567888999988654321         111   1 567888999988


Q ss_pred             eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccc
Q 021480          160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS  239 (312)
Q Consensus       160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~  239 (312)
                      +.+.+..+      ..+ ..+++|++|.++.+.  ..+   + ..+..+|+|+.|++..+.....   ...      .-.
T Consensus       251 ~~n~l~~~------~~~-~~l~~L~~L~l~~n~--l~~---~-~~~~~l~~L~~L~L~~n~l~~~---~~~------~l~  308 (347)
T 4fmz_A          251 GTNQISDI------NAV-KDLTKLKMLNVGSNQ--ISD---I-SVLNNLSQLNSLFLNNNQLGNE---DME------VIG  308 (347)
T ss_dssp             CSSCCCCC------GGG-TTCTTCCEEECCSSC--CCC---C-GGGGGCTTCSEEECCSSCCCGG---GHH------HHH
T ss_pred             CCCccCCC------hhH-hcCCCcCEEEccCCc--cCC---C-hhhcCCCCCCEEECcCCcCCCc---Chh------Hhh
Confidence            87755321      112 236788888874432  121   2 2457888899888877642210   000      002


Q ss_pred             cccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecC
Q 021480          240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA  280 (312)
Q Consensus       240 ~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~  280 (312)
                      ...+|+.+.+.+-.-...    ..  +...+.|+.+.+..+
T Consensus       309 ~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDI----RP--LASLSKMDSADFANQ  343 (347)
T ss_dssp             TCTTCSEEECCSSSCCCC----GG--GGGCTTCSEESSSCC
T ss_pred             ccccCCEEEccCCccccc----cC--hhhhhccceeehhhh
Confidence            246788888775321111    01  567788888777655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.98  E-value=6.9e-11  Score=108.82  Aligned_cols=61  Identities=11%  Similarity=0.038  Sum_probs=31.0

Q ss_pred             hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ...+++|+.|+++.+.+..+     +. .. .+++|+.|.++.+.-.     .++.-+..+++|+.|++..+.
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~-----~~-~~-~l~~L~~L~Ls~N~l~-----~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYDV-----KG-QV-VFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCEE-----EC-CC-CCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSC
T ss_pred             hhhCCcccEEecCCCccccc-----cc-cc-cCCCCCEEECCCCCCC-----CCCHhHcCCCCccEEEecCCc
Confidence            33566777777766654321     11 11 2556776666433211     122224566777777775543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.98  E-value=2.2e-10  Score=99.07  Aligned_cols=184  Identities=15%  Similarity=0.134  Sum_probs=117.4

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|++....  ...+| .+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++-  . .+..++.|+.|++.
T Consensus        42 ~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           42 GITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             TCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECT
T ss_pred             CcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECC
Confidence            45566653332  23455 5677889999999999877644488889999999999887652  2 46788999999998


Q ss_pred             ccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           85 NFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        85 ~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      +|.....- --..++|+.|.+.++ +..+ .+..+++|+.++++.+...         ..+   . +..+++|+.|+++.
T Consensus       116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------~~~---~-l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS---------DLT---P-LANLSKLTTLKADD  182 (308)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------CCG---G-GTTCTTCCEEECCS
T ss_pred             CCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC---------CCh---h-hcCCCCCCEEECCC
Confidence            87532100 013467888888773 2222 2567788888888644211         111   1 56788888888887


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      +.+..+.      .+ ..+++|++|.++.+.-  .+   +.. +..+|+|+.|.+..+.
T Consensus       183 n~l~~~~------~l-~~l~~L~~L~L~~N~l--~~---~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          183 NKISDIS------PL-ASLPNLIEVHLKNNQI--SD---VSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             SCCCCCG------GG-GGCTTCCEEECTTSCC--CB---CGG-GTTCTTCCEEEEEEEE
T ss_pred             CccCcCh------hh-cCCCCCCEEEccCCcc--Cc---ccc-ccCCCCCCEEEccCCe
Confidence            7553211      12 2477888888743321  11   222 5788899998888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.98  E-value=1.3e-10  Score=98.75  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      +++|+.|.+.++.+...+.+..+++|+.|+++++.+++-   ..+..++.|++|++.+|
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGN   95 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTS
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCC
Confidence            455555555555554444455555555555555554431   13445555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.97  E-value=2.8e-10  Score=103.42  Aligned_cols=182  Identities=19%  Similarity=0.205  Sum_probs=113.9

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      +.......+|..+.  ++++.|+|++|.+..  +..+.++++|+.|+|+++.++.- ....+.++++|++|++.+|....
T Consensus        50 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~  126 (440)
T 3zyj_A           50 CVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTT  126 (440)
T ss_dssp             CCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSS
T ss_pred             eCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCe
Confidence            44444457887764  689999999998764  46788999999999999987642 12357889999999999884321


Q ss_pred             eEE----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeee
Q 021480           91 HLN----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY  162 (312)
Q Consensus        91 ~~~----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~  162 (312)
                       +.    -..++|+.|.+.++ +..   ..+..+++|+.++++.+.....        .+  ...+.++++|+.|++..+
T Consensus       127 -~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~--~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          127 -IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--------IS--EGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             -CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------EC--TTTTTTCSSCCEEECTTS
T ss_pred             -eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--------eC--cchhhcccccCeecCCCC
Confidence             11    13478999999874 222   2356789999999875321110        00  123556778888888776


Q ss_pred             ehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          163 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       163 ~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      .+..+     +. +. .+++|+.|.++.+.-.  ++  .+..+..+++|+.|.+..+
T Consensus       196 ~l~~~-----~~-~~-~l~~L~~L~Ls~N~l~--~~--~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          196 NLREI-----PN-LT-PLIKLDELDLSGNHLS--AI--RPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CCSSC-----CC-CT-TCSSCCEEECTTSCCC--EE--CTTTTTTCTTCCEEECTTC
T ss_pred             cCccc-----cc-cC-CCcccCEEECCCCccC--cc--ChhhhccCccCCEEECCCC
Confidence            55322     11 11 3556666666322111  00  1234456666666666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.96  E-value=5.1e-10  Score=102.63  Aligned_cols=79  Identities=23%  Similarity=0.197  Sum_probs=38.0

Q ss_pred             CceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            5 CVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++.|+++.+.  ...+|.. +..+++|+.|+|++|.+..  +..+..+++|+.|+++++.+.+. ....+..+++|+.|
T Consensus        81 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  157 (477)
T 2id5_A           81 NLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQL  157 (477)
T ss_dssp             TCCEEECCSSC--CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEE
T ss_pred             cCCEEECCCCc--CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEE
Confidence            45566654332  2244543 3455666666666665432  23445555555555555544321 01123445555555


Q ss_pred             eeecc
Q 021480           82 TLMNF   86 (312)
Q Consensus        82 ~l~~~   86 (312)
                      ++.+|
T Consensus       158 ~l~~n  162 (477)
T 2id5_A          158 TLEKC  162 (477)
T ss_dssp             EEESC
T ss_pred             ECCCC
Confidence            55544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.96  E-value=1.9e-10  Score=97.53  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=51.1

Q ss_pred             cCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           14 WKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        14 ~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      +......+|..+.  ++|+.|++++|.+..  +..+..+++|++|+|+++.++.- ....+..++.|++|++.++.
T Consensus        24 ~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred             cCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence            3333346776553  678999999998765  23578899999999999887531 12345778999999998774

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.96  E-value=4.5e-11  Score=103.89  Aligned_cols=59  Identities=12%  Similarity=0.073  Sum_probs=29.1

Q ss_pred             hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      ..+++++.|+++.+.+..+     +.. . .+++|++|.++.+.-.     .++..+..+++|+.|++..+
T Consensus       166 ~~l~~L~~L~L~~N~l~~~-----~~~-~-~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDV-----KGQ-V-VFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEE-----ECC-C-CCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTS
T ss_pred             hccCcCCEEECCCCcCccc-----ccc-c-ccccCCEEECCCCcCC-----cchhhhcccCcccEEECcCC
Confidence            3556666666666544322     111 1 2556666666432111     12222456677777776554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.95  E-value=5.2e-10  Score=102.35  Aligned_cols=116  Identities=16%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      ++++.|+++.+..  ..+|+ +..+++|+.|++++|.+...+.+..+++|++|+++++.+++-.  . +..++.|++|++
T Consensus        68 ~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence            4567777754432  34555 7778889999998888766444788888999988888776432  2 678888888888


Q ss_pred             eccCCcee-EEEeCCCcceEEEeecccce-eeecCCcceEEEEe
Q 021480           84 MNFDGFTH-LNIDAPNLQFFDIGGVFDDV-TFENTFHLALVSIG  125 (312)
Q Consensus        84 ~~~~~~~~-~~i~~p~L~~L~~~~~~~~~-~~~~~~~L~~l~l~  125 (312)
                      .+|..... .--..++|+.|.+.+..... .+.++++|+.++++
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            87742110 00123456666655432211 23455556666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.94  E-value=3.9e-10  Score=110.18  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=86.6

Q ss_pred             CCceEEEEEecCCcc-------e---------ecCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-
Q 021480            4 SCVKEFILEIWKGQR-------Y---------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-   62 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~-------~---------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-   62 (312)
                      ++++.|+|+.+....       .         .+|..+.  .+++|+.|+|++|.+..  |..+.++++|+.|+|++|. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            467888886554221       1         2899987  99999999999997643  6678899999999999998 


Q ss_pred             eChHHHHHHHh-------CCcccceeeeeccCCceeEEE-----eCCCcceEEEeec-ccce-eeecCCcceEEEEeEE
Q 021480           63 LSQDVFENLIS-------SSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLY  127 (312)
Q Consensus        63 ~~~~~l~~ll~-------~cp~Le~L~l~~~~~~~~~~i-----~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~  127 (312)
                      +++..++..+.       .+|.|+.|++.+|... .+.-     ..++|+.|.++++ +..+ .+..+++|+.++++.+
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence            87633444333       4569999999988643 2221     3467888888763 2222 4567778888877644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.93  E-value=2.3e-10  Score=108.07  Aligned_cols=199  Identities=17%  Similarity=0.080  Sum_probs=127.7

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      ++++|+++.+.  ...+|..+..+++|++|++++|.+..  +..+..+++|++|+++++.+.+......+..++.|++|+
T Consensus       279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            45555553332  34788888889999999999997764  446788999999999998765432233467899999999


Q ss_pred             eeccCCceeEE-----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480           83 LMNFDGFTHLN-----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  153 (312)
Q Consensus        83 l~~~~~~~~~~-----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  153 (312)
                      +.+|.......     -..++|+.|.+.++ +..   ..+..+++|+.++++.+......        +  ...+..+++
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~--~~~~~~l~~  426 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD--------A--QSPFQNLHL  426 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT--------T--CCTTTTCTT
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc--------c--chhhhCccc
Confidence            98876433211     13478888888874 222   23557888999988754432110        0  122557889


Q ss_pred             ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      ++.|+++.+.+.    +..+..+. .+++|++|.+..+.-....+ .....+..+++|+.|++..+..
T Consensus       427 L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          427 LKVLNLSHSLLD----ISSEQLFD-GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             CCEEECTTCCCB----TTCTTTTT-TCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCEEECCCCccC----CcCHHHHh-CCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCcc
Confidence            999999877652    22222222 47789988884332111000 0123468899999999987653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=1.4e-10  Score=113.21  Aligned_cols=145  Identities=11%  Similarity=0.057  Sum_probs=83.9

Q ss_pred             CceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcc-ccee
Q 021480            5 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L   81 (312)
                      +++.|+++.+..  ..+|.  .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.++  .++..+..++. |+.|
T Consensus       549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEE
T ss_pred             CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEE
Confidence            566666644433  27777  77777888888888886655346777888888888888775  34445677777 8888


Q ss_pred             eeeccCCceeEEE-----eCCCcceEEEeecc-----ccee--ee--cCCcceEEEEeEEEeecCCccCCCCcchhHHHH
Q 021480           82 TLMNFDGFTHLNI-----DAPNLQFFDIGGVF-----DDVT--FE--NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF  147 (312)
Q Consensus        82 ~l~~~~~~~~~~i-----~~p~L~~L~~~~~~-----~~~~--~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      ++.+|... .+.-     ..++|+.|.++++.     ..+.  +.  ..++|+.++++.+...         ..+  ..+
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---------~lp--~~~  692 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---------KFP--TEL  692 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---------SCC--HHH
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---------ccC--HHH
Confidence            88776422 1110     11236666666531     1110  11  2346666666543211         011  233


Q ss_pred             hhcCCCccEEEEeeeehh
Q 021480          148 FVHLPHIRRLEIQSYFLK  165 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~~~  165 (312)
                      +..+++|+.|+++.+.+.
T Consensus       693 ~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          693 FATGSPISTIILSNNLMT  710 (876)
T ss_dssp             HHTTCCCSEEECCSCCCS
T ss_pred             HccCCCCCEEECCCCcCC
Confidence            446677777777766543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.92  E-value=7.6e-10  Score=96.51  Aligned_cols=116  Identities=17%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+++...  ...+|. .+..+++|+.|+|++|.+..  |..+..+++|++|+++++.++.  ++.  ..++.|++
T Consensus        52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCE
T ss_pred             CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccE
Confidence            355666664433  235555 56678889999998887754  4567788888888888887652  111  11256666


Q ss_pred             eeeeccCCceeE---EEeCCCcceEEEeecc------cceeeecCCcceEEEEe
Q 021480           81 LTLMNFDGFTHL---NIDAPNLQFFDIGGVF------DDVTFENTFHLALVSIG  125 (312)
Q Consensus        81 L~l~~~~~~~~~---~i~~p~L~~L~~~~~~------~~~~~~~~~~L~~l~l~  125 (312)
                      |++.++......   --..++|+.|.+.++.      ....+..+++|+.++++
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            666655321100   0023455555555421      11123445556665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.91  E-value=9.1e-10  Score=104.71  Aligned_cols=122  Identities=11%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             CCceEEEEEecCCccee-----------------cCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee
Q 021480            4 SCVKEFILEIWKGQRYK-----------------VPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT   62 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~   62 (312)
                      +++++|+++..... ..                 +|..+.  .+++|+.|+|++|.+..  |..+..+++|++|++++|.
T Consensus       206 ~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          206 TKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             cCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            46788888654422 11                 999999  99999999999997654  6778999999999999998


Q ss_pred             -eChHHHHHHHhC------CcccceeeeeccCCceeEEE-----eCCCcceEEEeec-cc-ce-eeecCCcceEEEEeEE
Q 021480           63 -LSQDVFENLISS------SPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGV-FD-DV-TFENTFHLALVSIGLY  127 (312)
Q Consensus        63 -~~~~~l~~ll~~------cp~Le~L~l~~~~~~~~~~i-----~~p~L~~L~~~~~-~~-~~-~~~~~~~L~~l~l~~~  127 (312)
                       +++..++..+..      ++.|+.|++.+|... .+.-     ..++|+.|.+.++ +. .+ .+..+++|+.++++.+
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence             887345544443      588999999887533 2221     3357777777653 11 11 3455667777776544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.90  E-value=1e-09  Score=102.78  Aligned_cols=223  Identities=15%  Similarity=0.115  Sum_probs=104.9

Q ss_pred             cCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE-----Ee
Q 021480           21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-----ID   95 (312)
Q Consensus        21 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-----i~   95 (312)
                      +|..+..+ +|+.|++++|.+...+. ..+++|+.|++.++.+.+.. .  ...+|.|++|++.+|.......     ..
T Consensus       297 l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  371 (570)
T 2z63_A          297 VKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFG  371 (570)
T ss_dssp             CCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEECCSSCCBEEEEEEHHHHT
T ss_pred             hhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccc-c--cccCCCCCEEeCcCCccCccccccccccc
Confidence            44444444 44555554444432111 24455555555554432210 0  0455666666665554321110     02


Q ss_pred             CCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCC
Q 021480           96 APNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNV  172 (312)
Q Consensus        96 ~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~  172 (312)
                      .++|+.|.+.++ +..+  .+..+++|+.++++.+......        +  ...+.++++|+.|++..+.+.    +..
T Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~--~~~~~~l~~L~~L~l~~n~l~----~~~  437 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--------E--FSVFLSLRNLIYLDISHTHTR----VAF  437 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT--------T--SCTTTTCTTCCEEECTTSCCE----ECC
T ss_pred             cCccCEEECCCCccccccccccccCCCCEEEccCCcccccc--------c--hhhhhcCCCCCEEeCcCCccc----ccc
Confidence            356666666552 1111  1456666777666543322110        0  012446677777777665442    122


Q ss_pred             CCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe-
Q 021480          173 PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG-  251 (312)
Q Consensus       173 ~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~-  251 (312)
                      +..+. .+++|+.|.+..+.-...   .++..+..+++|+.|++..+.....   ... +     -...++|+.+.+.+ 
T Consensus       438 ~~~~~-~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~---~~~-~-----~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          438 NGIFN-GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL---SPT-A-----FNSLSSLQVLNMASN  504 (570)
T ss_dssp             TTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE---CTT-T-----TTTCTTCCEEECCSS
T ss_pred             hhhhh-cCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC---Chh-h-----hhcccCCCEEeCCCC
Confidence            22222 366777777632211100   1344567778888887765532200   000 0     01236777777764 


Q ss_pred             -EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          252 -ISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       252 -~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                       +.+..      ...+.+.+.|+.+.+..++
T Consensus       505 ~l~~~~------~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          505 QLKSVP------DGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred             cCCCCC------HHHhhcccCCcEEEecCCc
Confidence             22221      1234567788888887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=1.7e-09  Score=101.22  Aligned_cols=232  Identities=14%  Similarity=0.115  Sum_probs=147.9

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHH-HHHHHhCCcccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l   83 (312)
                      ++++|++..+..  ..+|.  ..+++|+.|++.+|..........+++|+.|+++++.+++.. ....+..++.|++|++
T Consensus       305 ~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l  380 (570)
T 2z63_A          305 GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL  380 (570)
T ss_dssp             CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred             CccEEeeccCcc--cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence            344455433322  25665  367899999999998765333478999999999999876421 2345678999999999


Q ss_pred             eccCCcee--EEEeCCCcceEEEeec-cc---c-eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccE
Q 021480           84 MNFDGFTH--LNIDAPNLQFFDIGGV-FD---D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR  156 (312)
Q Consensus        84 ~~~~~~~~--~~i~~p~L~~L~~~~~-~~---~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~  156 (312)
                      .+|.....  .--..++|+.|.+.++ +.   . ..+..+++|+.++++.+.....           ....+.++++|+.
T Consensus       381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~  449 (570)
T 2z63_A          381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEV  449 (570)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCE
T ss_pred             CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-----------chhhhhcCCcCcE
Confidence            98864321  1225689999998873 21   1 2356789999999875432211           0133667899999


Q ss_pred             EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCccccccccccc
Q 021480          157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDH  236 (312)
Q Consensus       157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~  236 (312)
                      |++..+.+.   .+..|..+. .+++|+.|.++.+.-.  +  ..+..+..+|+|+.|++..+.....   +...+    
T Consensus       450 L~l~~n~l~---~~~~p~~~~-~l~~L~~L~l~~n~l~--~--~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~----  514 (570)
T 2z63_A          450 LKMAGNSFQ---ENFLPDIFT-ELRNLTFLDLSQCQLE--Q--LSPTAFNSLSSLQVLNMASNQLKSV---PDGIF----  514 (570)
T ss_dssp             EECTTCEEG---GGEECSCCT-TCTTCCEEECTTSCCC--E--ECTTTTTTCTTCCEEECCSSCCSCC---CTTTT----
T ss_pred             EECcCCcCc---cccchhhhh-cccCCCEEECCCCccc--c--CChhhhhcccCCCEEeCCCCcCCCC---CHHHh----
Confidence            999987653   223333333 4788998888433211  1  1244568899999999987653210   00000    


Q ss_pred             ccccccCceEEEEEe--EecchhHHHHH-HHHHcc
Q 021480          237 WTSLFSQLRMVKIVG--ISGIRSELEFI-KFVLSN  268 (312)
Q Consensus       237 ~~~~~~~L~~v~i~~--~~~~~~~~~~~-~~ll~~  268 (312)
                        ...++|+.+.+.+  +.+......++ .++-++
T Consensus       515 --~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~  547 (570)
T 2z63_A          515 --DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  547 (570)
T ss_dssp             --TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred             --hcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence              1247899999885  55555555555 554443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.88  E-value=7.8e-10  Score=100.94  Aligned_cols=115  Identities=11%  Similarity=0.065  Sum_probs=77.1

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      +++++|+++....  ..+| .+..+++|++|++++|.+...+ ++.+++|+.|+++++.+++-.    +..++.|++|++
T Consensus        42 ~~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEEC
Confidence            3566666654332  2445 5778888999999888877653 778888888888888876532    678888888888


Q ss_pred             eccCCceeEEE-eCCCcceEEEeec-ccceeeecCCcceEEEEeEE
Q 021480           84 MNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        84 ~~~~~~~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~  127 (312)
                      .+|.-.. +.+ ..++|+.|.+.++ +..+.+..+++|+.++++.+
T Consensus       114 ~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          114 DTNKLTK-LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CSSCCSC-CCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred             CCCcCCe-ecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence            8774322 222 3357777777663 33444566777777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.87  E-value=6.9e-10  Score=95.69  Aligned_cols=189  Identities=17%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC-CC-CCCCCcccceeeecceeeChH-HHHHHHhCCcccceeeeeccC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      +++.......+|..+.  ++|+.|++++|.+.. +. .+..+++|+.|+++++.++.. .....+..++.|++|+++++.
T Consensus        12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            3344444457777654  689999999998865 33 368999999999999987632 112334578999999999885


Q ss_pred             Cce--eEEEeCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           88 GFT--HLNIDAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        88 ~~~--~~~i~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      ...  ..-...++|+.|.+.++ +..    ..+..+++|+.++++.+.....           ....+..+++++.|++.
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-----------STTTTTTCTTCCEEECT
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-----------chhhcccCcCCCEEECC
Confidence            332  11224678999988773 221    1356788999998865432110           01235567888888887


Q ss_pred             eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      .+.+..   ...+..+. .+++|++|.++.+.-..    ..+..+..+|+|+.|++..+.
T Consensus       159 ~n~l~~---~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          159 GNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             TCEEGG---GEECSCCT-TCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC
T ss_pred             CCcccc---ccchhHHh-hCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCc
Confidence            765531   11222222 36677877774331111    013445677888888886654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.86  E-value=5.1e-11  Score=106.34  Aligned_cols=233  Identities=17%  Similarity=0.126  Sum_probs=147.0

Q ss_pred             CCceEEEEEecCC---cceecCCCcccCCcceEEEeeceeeCC-----CCC-------CCCCcccceeeecceeeChH--
Q 021480            4 SCVKEFILEIWKG---QRYKVPSSLFLCQNLIHLELFNCLLKP-----PST-------FKGFRNLKSLDLQHITLSQD--   66 (312)
Q Consensus         4 ~~v~eL~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~-------~~~l~~L~~L~L~~~~~~~~--   66 (312)
                      +++++|+++.+..   ....++..+..+++|++|+|++|.+..     |..       +..+++|++|+|++|.+++.  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            4678888754321   223456667789999999999985432     222       25789999999999998764  


Q ss_pred             -HHHHHHhCCcccceeeeeccCCcee--EEE-----eC---------CCcceEEEeec-cc--ce-----eeecCCcceE
Q 021480           67 -VFENLISSSPTLERLTLMNFDGFTH--LNI-----DA---------PNLQFFDIGGV-FD--DV-----TFENTFHLAL  121 (312)
Q Consensus        67 -~l~~ll~~cp~Le~L~l~~~~~~~~--~~i-----~~---------p~L~~L~~~~~-~~--~~-----~~~~~~~L~~  121 (312)
                       .+...+..|+.|+.|++.+|.....  ..+     ..         ++|++|.+.++ +.  .+     .+..+++|+.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             4667789999999999999864210  001     11         89999999874 21  11     2446889999


Q ss_pred             EEEeEEEeecCCccCCCCcchhHHH-HhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHH
Q 021480          122 VSIGLYVNVKNDQAMGPGNSCKLLR-FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLA  200 (312)
Q Consensus       122 l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~  200 (312)
                      ++++.+....       .....+.+ .+..+++|+.|+++.+.+........+..+. .+++|++|.++.+.-...+...
T Consensus       192 L~L~~n~l~~-------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          192 VKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             EECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHH
T ss_pred             EECcCCCCCH-------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHH
Confidence            9987542110       01111223 5668899999999988662110011121222 4778999998544333344445


Q ss_pred             HHHhhhc--CCCcceEEEEeccCCCCCccccccccccccccc---ccCceEEEEEe
Q 021480          201 ALCLLRS--SPNLQELEMLARPEETGIGVLTNFWEVDHWTSL---FSQLRMVKIVG  251 (312)
Q Consensus       201 l~~~L~~--~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~---~~~L~~v~i~~  251 (312)
                      ++..+..  +|+|+.|.+..+.....+.       ...+...   +++|+.+.+.+
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~-------~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAV-------RTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHH-------HHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHH-------HHHHHHHHhcCCCceEEEccC
Confidence            6677755  9999999998765321000       0012222   48899999885

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.85  E-value=1.3e-09  Score=91.39  Aligned_cols=71  Identities=24%  Similarity=0.229  Sum_probs=52.2

Q ss_pred             cCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           14 WKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        14 ~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      .......+|..+.  ++++.|+|++|.+..  +..+.++++|+.|+|+++.+++. ....+..++.|++|++.++.
T Consensus        22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence            4333457777654  688999999998765  34578899999999999887642 23346788899999998774

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.84  E-value=1.2e-09  Score=87.99  Aligned_cols=142  Identities=20%  Similarity=0.185  Sum_probs=83.2

Q ss_pred             cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce---eEEEeCCCcceEE
Q 021480           27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT---HLNIDAPNLQFFD  103 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~---~~~i~~p~L~~L~  103 (312)
                      .+++|+.|++++|.+...+.+..+++|++|++++|.++.-   ..++.+|.|++|++.+|....   ..--..++|+.|.
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4566666777666665533566666777777766654321   135566677777776653221   0001235666666


Q ss_pred             Eeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcc
Q 021480          104 IGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRP  179 (312)
Q Consensus       104 ~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~  179 (312)
                      ++++ +..   -.+..+++|+.++++.+....        ..    ..+..+++|+.|+++.+.+..     .+ .+. .
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------~~----~~l~~l~~L~~L~l~~n~i~~-----~~-~l~-~  179 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------DI----MPLKTLPELKSLNIQFDGVHD-----YR-GIE-D  179 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------CC----GGGGGCSSCCEEECTTBCCCC-----CT-TGG-G
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------cc----HhhcCCCCCCEEECCCCCCcC-----hH-Hhc-c
Confidence            6653 221   135578899999887553111        11    236678999999998886642     22 222 4


Q ss_pred             cCCcceEEEEE
Q 021480          180 CVDLNYLSIRI  190 (312)
Q Consensus       180 f~~L~~L~l~~  190 (312)
                      +++|++|.+..
T Consensus       180 l~~L~~L~l~~  190 (197)
T 4ezg_A          180 FPKLNQLYAFS  190 (197)
T ss_dssp             CSSCCEEEECB
T ss_pred             CCCCCEEEeeC
Confidence            78899888843

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.84  E-value=1.6e-09  Score=101.85  Aligned_cols=236  Identities=16%  Similarity=0.150  Sum_probs=140.7

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC--CC-CCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc--------CC
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP--PS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF--------DG   88 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~--------~~   88 (312)
                      .+|..+..+++|++|++++|.+.+  .. .+..+++|++|++.++ +++..+..+...||.|++|++.+|        ..
T Consensus       280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence            344444467888888888887543  11 1357888999998888 666667777778899999988543        22


Q ss_pred             cee-----EEEeCCCcceEEEeec-ccce---ee-ecCCcceEEEEeEEE--eecCCccCC-CCcchhHHHHhhcCCCcc
Q 021480           89 FTH-----LNIDAPNLQFFDIGGV-FDDV---TF-ENTFHLALVSIGLYV--NVKNDQAMG-PGNSCKLLRFFVHLPHIR  155 (312)
Q Consensus        89 ~~~-----~~i~~p~L~~L~~~~~-~~~~---~~-~~~~~L~~l~l~~~~--~~~~~~~~~-~~~~~~~~~~l~~l~~l~  155 (312)
                      +..     +.-..|+|+.|.+.+. +...   .+ ..+|+|+.+++....  .+..   +. ......+..++.++++|+
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~~~l~~~~~~L~  435 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY---LTLEPLDIGFGAIVEHCKDLR  435 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT---TTCCCTHHHHHHHHHHCTTCC
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc---ccCCchhhHHHHHHhhCCCcc
Confidence            211     1113689999966552 2211   12 258999999987321  1110   00 001234556678899999


Q ss_pred             EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480          156 RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD  235 (312)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~  235 (312)
                      .|++++. +.   . .....+...+++|+.|.+..+...  + .++..+...||+|+.|++..+.....   ....+   
T Consensus       436 ~L~L~~~-l~---~-~~~~~l~~~~~~L~~L~L~~~~i~--~-~~~~~l~~~~~~L~~L~L~~n~~~~~---~~~~~---  501 (594)
T 2p1m_B          436 RLSLSGL-LT---D-KVFEYIGTYAKKMEMLSVAFAGDS--D-LGMHHVLSGCDSLRKLEIRDCPFGDK---ALLAN---  501 (594)
T ss_dssp             EEECCSS-CC---H-HHHHHHHHHCTTCCEEEEESCCSS--H-HHHHHHHHHCTTCCEEEEESCSCCHH---HHHHT---
T ss_pred             EEeecCc-cc---H-HHHHHHHHhchhccEeeccCCCCc--H-HHHHHHHhcCCCcCEEECcCCCCcHH---HHHHH---
Confidence            9999652 21   1 111111123678999999654322  2 24666778899999999998764210   00000   


Q ss_pred             cccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEe
Q 021480          236 HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK  278 (312)
Q Consensus       236 ~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~  278 (312)
                       . ...++|+.+.+.++......   ++.+.+..+.|+...+.
T Consensus       502 -~-~~l~~L~~L~l~~~~~~~~~---~~~l~~~lp~l~i~~~~  539 (594)
T 2p1m_B          502 -A-SKLETMRSLWMSSCSVSFGA---CKLLGQKMPKLNVEVID  539 (594)
T ss_dssp             -G-GGGGGSSEEEEESSCCBHHH---HHHHHHHCTTEEEEEEC
T ss_pred             -H-HhCCCCCEEeeeCCCCCHHH---HHHHHHhCCCCEEEEec
Confidence             1 12479999999987664433   44455566777554444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.84  E-value=1.9e-10  Score=109.33  Aligned_cols=146  Identities=12%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             CCceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeC-CCCCCCCCcccceeeecceeeChHHHHHHHhCCcc-cc
Q 021480            4 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LE   79 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le   79 (312)
                      .++++|+++.+..  ..+|.  .+..+++|+.|++++|.+. ..+.+..+++|+.|+++++.++  .++..+..++. |+
T Consensus       305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence            4556666544332  26676  6667777777777777665 3236667777777777777665  34444666777 77


Q ss_pred             eeeeeccCCceeEE--E---eCCCcceEEEeec-ccc---eeee-------cCCcceEEEEeEEEeecCCccCCCCcchh
Q 021480           80 RLTLMNFDGFTHLN--I---DAPNLQFFDIGGV-FDD---VTFE-------NTFHLALVSIGLYVNVKNDQAMGPGNSCK  143 (312)
Q Consensus        80 ~L~l~~~~~~~~~~--i---~~p~L~~L~~~~~-~~~---~~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~~  143 (312)
                      .|++.+|... .+.  +   ..++|+.|.+.++ +..   -.+.       .+++|+.++++.+...         ..+ 
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---------~lp-  449 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---------KFP-  449 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---------SCC-
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC---------cCC-
Confidence            7777766422 111  0   1125666666652 111   1122       4556777766543211         001 


Q ss_pred             HHHHhhcCCCccEEEEeeeehh
Q 021480          144 LLRFFVHLPHIRRLEIQSYFLK  165 (312)
Q Consensus       144 ~~~~l~~l~~l~~L~l~~~~~~  165 (312)
                       ..++..+++|+.|+++.+.+.
T Consensus       450 -~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          450 -KELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             -THHHHTTCCCSEEECCSSCCS
T ss_pred             -HHHHccCCCCCEEECCCCCCC
Confidence             133445677777777766543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.84  E-value=3.1e-09  Score=104.32  Aligned_cols=65  Identities=18%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CCCcccCCcceEEEeeceeeCC--CCC--CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           22 PSSLFLCQNLIHLELFNCLLKP--PST--FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        22 p~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      |..+..+++|+.|+|++|.+..  +..  +..+++|++|+|++|.+++......++.+++|++|++.++
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            4445555555555555555432  222  4555666666666655543222234556666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.84  E-value=5.5e-09  Score=102.53  Aligned_cols=119  Identities=16%  Similarity=0.057  Sum_probs=68.2

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      .++++|+++.+... .-.|..+..+++|+.|+|++|.+..  +..+.++++|+.|+|++|.+++. ....+..+|.|+.|
T Consensus       266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEE
Confidence            56777777433322 1234445567788888888876643  44567788888888888776432 12345677778888


Q ss_pred             eeeccCCceeEE----EeCCCcceEEEeecccceeeecCCcceEEEEeE
Q 021480           82 TLMNFDGFTHLN----IDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL  126 (312)
Q Consensus        82 ~l~~~~~~~~~~----i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~  126 (312)
                      ++.+|.... +.    -..++|+.|.+.++... .+..+++|+.++++.
T Consensus       344 ~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~  390 (844)
T 3j0a_A          344 DLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG  390 (844)
T ss_dssp             ECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEES
T ss_pred             ECCCCCCCc-cChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccCC
Confidence            777663211 11    12456777766663211 122255566555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.82  E-value=1.7e-10  Score=99.93  Aligned_cols=183  Identities=14%  Similarity=0.081  Sum_probs=116.3

Q ss_pred             eecCCCcc-------cCCcceEEEeeceeeCC--CCCC--CCCcccceeeecceeeChH--HHHHHHh-CCcccceeeee
Q 021480           19 YKVPSSLF-------LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VFENLIS-SSPTLERLTLM   84 (312)
Q Consensus        19 ~~lp~~l~-------~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~   84 (312)
                      ..+|..+.       .+++|++|+|++|.+..  |..+  ..+++|+.|+|+++.+++.  .+..+-. .++.|++|+++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~  157 (312)
T 1wwl_A           78 ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA  157 (312)
T ss_dssp             EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred             CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee
Confidence            35665554       67899999999998863  5554  7899999999999998653  2222211 23899999999


Q ss_pred             ccCCceeE---EEeCCCcceEEEeecc-c-------ceeeecCCcceEEEEeEEEeecCCccCCCCcc-hhHHHHhhcCC
Q 021480           85 NFDGFTHL---NIDAPNLQFFDIGGVF-D-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNS-CKLLRFFVHLP  152 (312)
Q Consensus        85 ~~~~~~~~---~i~~p~L~~L~~~~~~-~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~l~~l~  152 (312)
                      +|......   --..++|+.|.++++- .       .+.+..+++|++++++.+...         .. .....++..++
T Consensus       158 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME---------TPSGVCSALAAARV  228 (312)
T ss_dssp             SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC---------CHHHHHHHHHHTTC
T ss_pred             CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc---------chHHHHHHHHhcCC
Confidence            88532110   0145789999998742 1       122367899999998754211         11 11234556789


Q ss_pred             CccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          153 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       153 ~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      +|+.|+++.+.+.    +..+......+++|++|.++.+.-.     .++..+.  ++|+.|++..+..
T Consensus       229 ~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          229 QLQGLDLSHNSLR----DAAGAPSCDWPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CCSEEECTTSCCC----SSCCCSCCCCCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC
T ss_pred             CCCEEECCCCcCC----cccchhhhhhcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC
Confidence            9999999988653    2121111123578998888433211     1333222  8999999987653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.82  E-value=6.5e-09  Score=96.29  Aligned_cols=66  Identities=17%  Similarity=0.213  Sum_probs=39.9

Q ss_pred             hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      ..++++++|+++.+.+.    +..+..+. .+++|+.|.++.+  ...++..++..+..+++|+.|++..+..
T Consensus       321 ~~l~~L~~L~Ls~n~l~----~~~~~~~~-~l~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLT----DTVFENCG-HLTELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             SSCCCCCEEECCSSCCC----TTTTTTCC-CCSSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             hhCCcccEEEeECCccC----hhhhhhhc-cCCCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCCcC
Confidence            45566677776665442    22233332 4778888887433  2233334666778899999999887643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.81  E-value=4.6e-10  Score=98.06  Aligned_cols=199  Identities=15%  Similarity=0.081  Sum_probs=101.6

Q ss_pred             CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++.|+++.+..  ..+| ..+..+++|+.|++++|.+..  +..+..+++|++|+++++.++.  ++..  ..+.|++
T Consensus        54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~--~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPN--LPSSLVE  127 (332)
T ss_dssp             TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSS--CCTTCCE
T ss_pred             CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence            3567777654432  3454 467788889999998887654  4567788888999888887652  1111  1267888


Q ss_pred             eeeeccCCceeEE----EeCCCcceEEEeecc-c-----ceeeecCCcceEEEEeEEEeecCCc-------cCCCC--cc
Q 021480           81 LTLMNFDGFTHLN----IDAPNLQFFDIGGVF-D-----DVTFENTFHLALVSIGLYVNVKNDQ-------AMGPG--NS  141 (312)
Q Consensus        81 L~l~~~~~~~~~~----i~~p~L~~L~~~~~~-~-----~~~~~~~~~L~~l~l~~~~~~~~~~-------~~~~~--~~  141 (312)
                      |++.++.... +.    -..++|+.|.+.++. .     ...+..+ +|+.++++.+....-..       .....  ..
T Consensus       128 L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          128 LRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI  205 (332)
T ss_dssp             EECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred             EECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence            8877664221 11    123567777766531 1     1112222 44444443221110000       00000  00


Q ss_pred             -hhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          142 -CKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       142 -~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                       ......+..+++++.|++..+.+..+    .+..+ ..+++|++|.+..+.-.     .++..+..+++|+.|++..+.
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMI----ENGSL-SFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCC----CTTGG-GGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcC----ChhHh-hCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCC
Confidence             00001244566777777766544211    11112 23566777766433111     234445677777777776654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.81  E-value=1.2e-09  Score=95.31  Aligned_cols=178  Identities=20%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-
Q 021480           18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-   94 (312)
Q Consensus        18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-   94 (312)
                      ...+|..+.  ++|+.|++++|.+..  +..+..+++|++|+++++.+++. .+..+..++.|++|++.++.... +.. 
T Consensus        43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-l~~~  118 (330)
T 1xku_A           43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQLKE-LPEK  118 (330)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCSB-CCSS
T ss_pred             ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcCCc-cChh
Confidence            346676553  689999999998865  33588999999999999987642 23457889999999999875321 110 


Q ss_pred             eCCCcceEEEeec-ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480           95 DAPNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG  170 (312)
Q Consensus        95 ~~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~  170 (312)
                      ..++|+.|.+.++ +..+   .+..+++|+.++++.+.....         ......+.++++|+.|++..+.+..    
T Consensus       119 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~----  185 (330)
T 1xku_A          119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLSYIRIADTNITT----  185 (330)
T ss_dssp             CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCCEEECCSSCCCS----
T ss_pred             hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcCEEECCCCcccc----
Confidence            1268999999874 2222   356789999999875432110         0011336678999999998775532    


Q ss_pred             CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          171 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       171 ~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                       .+..   .+++|++|.+..+.-...    .+..+..+++|+.|++..+.
T Consensus       186 -l~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          186 -IPQG---LPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             -CCSS---CCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSC
T ss_pred             -CCcc---ccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCc
Confidence             2222   236788877743311110    13455778888888887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.81  E-value=7.5e-10  Score=95.47  Aligned_cols=198  Identities=19%  Similarity=0.123  Sum_probs=113.1

Q ss_pred             CCceEEEEEecCCc-ceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++++|+++..... ....|..+..+++|+.|++++|.+.. +..+..+++|++|+++++.+++......+..++.|++|
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            45677776543321 11234555667888888888886654 34467788888888888877542222346778888888


Q ss_pred             eeeccCCceeEE---EeCCCcceEEEeec-cc----ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480           82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  153 (312)
Q Consensus        82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  153 (312)
                      ++.+|.......   -..++|+.|.+.++ +.    ...+..+++|+.++++.+.....        .   ...+..+++
T Consensus       132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~---~~~~~~l~~  200 (306)
T 2z66_A          132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL--------S---PTAFNSLSS  200 (306)
T ss_dssp             ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE--------C---TTTTTTCTT
T ss_pred             ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc--------C---HHHhcCCCC
Confidence            888774321100   02367888877763 21    12355678888888764321100        0   123456788


Q ss_pred             ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCC-CcceEEEEeccC
Q 021480          154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSP-NLQELEMLARPE  221 (312)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p-~Le~L~l~~~~~  221 (312)
                      |+.|+++.+.+..+    .+..+ ..+++|++|.++.+.-..    ..+..+..+| +|+.|++..++.
T Consensus       201 L~~L~L~~N~l~~~----~~~~~-~~l~~L~~L~L~~N~l~~----~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          201 LQVLNMSHNNFFSL----DTFPY-KCLNSLQVLDYSLNHIMT----SKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CCEEECTTSCCSBC----CSGGG-TTCTTCCEEECTTSCCCB----CSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCEEECCCCccCcc----Chhhc-cCcccCCEeECCCCCCcc----cCHHHHHhhhccCCEEEccCCCe
Confidence            88888877655311    11111 236677777774332111    1233445554 788888876654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.80  E-value=4.6e-10  Score=95.38  Aligned_cols=140  Identities=19%  Similarity=0.197  Sum_probs=84.6

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +++.......+|..+.  ++|++|++++|.+..  +..+.++++|+.|+++++.++.- ....+..++.|++|++.++..
T Consensus        12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc
Confidence            3344434456776553  568888888887654  33567788888888888876532 122456778888888877743


Q ss_pred             ceeEE----EeCCCcceEEEeec-c---cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           89 FTHLN----IDAPNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        89 ~~~~~----i~~p~L~~L~~~~~-~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      .. +.    -..++|+.|.+.++ +   ....+..+++|+.++++.+.....       .   +...+..+++|+.|+++
T Consensus        89 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~---l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A           89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------K---LPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------C---CCGGGGGCTTCCEEECC
T ss_pred             Cc-cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-------c---CchhhccCCCCCEEECC
Confidence            21 11    12367777777652 2   223456778888888764332110       0   01235667888888887


Q ss_pred             eeeh
Q 021480          161 SYFL  164 (312)
Q Consensus       161 ~~~~  164 (312)
                      .+.+
T Consensus       158 ~N~l  161 (276)
T 2z62_A          158 SNKI  161 (276)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            7654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.80  E-value=1.2e-10  Score=103.05  Aligned_cols=248  Identities=12%  Similarity=0.088  Sum_probs=130.9

Q ss_pred             cCCCcccCCcceEEEeeceeeCCC------CCCCCCc-ccceeeecceeeChH---HHHHHHhCC-cccceeeeeccCCc
Q 021480           21 VPSSLFLCQNLIHLELFNCLLKPP------STFKGFR-NLKSLDLQHITLSQD---VFENLISSS-PTLERLTLMNFDGF   89 (312)
Q Consensus        21 lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~~~~~   89 (312)
                      +|..+...++|+.|+|++|.+...      ..+..++ +|++|+|++|.+++.   .+..++..+ +.|++|++++|...
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~   93 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS   93 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence            333334455688888888877652      2355677 888888888887643   445555554 88888888887532


Q ss_pred             eeEE------E-eC-CCcceEEEeec-cccee-------eec-CCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021480           90 THLN------I-DA-PNLQFFDIGGV-FDDVT-------FEN-TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  152 (312)
Q Consensus        90 ~~~~------i-~~-p~L~~L~~~~~-~~~~~-------~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  152 (312)
                      ....      + .. ++|+.|.++++ +....       +.. .++|++++++.+....       .....+...+...+
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------~~~~~l~~~l~~~~  166 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------KSSDELIQILAAIP  166 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-------HHHHHHHHHHhcCC
Confidence            1100      0 11 68888888773 22111       122 3588888886543211       11223344455565


Q ss_pred             -CccEEEEeeeehhhhcccCCCCCCCccc-CCcceEEEEEEcCChhhHHHHHHhhhc-CCCcceEEEEeccCCCCCcccc
Q 021480          153 -HIRRLEIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRS-SPNLQELEMLARPEETGIGVLT  229 (312)
Q Consensus       153 -~l~~L~l~~~~~~~l~~~~~~~~l~~~f-~~L~~L~l~~~~~~~~~~~~l~~~L~~-~p~Le~L~l~~~~~~~~~~~~~  229 (312)
                       +++.|+++.+.+...........+. .+ .+|++|.++.+.-...+...++..+.. +++|+.|++..+.....+....
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  245 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL  245 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence             8888888877653111000000111 23 478888885442222333446665555 5689988887764321110000


Q ss_pred             cccccccccccccCceEEEEEeEe---cchhHHHHHHHHHccCcccceeEEecCC
Q 021480          230 NFWEVDHWTSLFSQLRMVKIVGIS---GIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       230 ~~w~~~~~~~~~~~L~~v~i~~~~---~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      ..+     -....+|+.+.+.+-.   -....+..+...+.+.+.|+.+.+..+.
T Consensus       246 ~~~-----~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          246 KLL-----KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHT-----TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHH-----HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            000     0123678888877543   1222233333233344455555554443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.80  E-value=3.1e-09  Score=94.85  Aligned_cols=208  Identities=19%  Similarity=0.102  Sum_probs=135.9

Q ss_pred             CCceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+++.+.  ...+|..+ ..+++|++|++++|.+..  +..+..+++|++|+++++.+++..    +..+|.|+.
T Consensus       117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~  190 (390)
T 3o6n_A          117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  190 (390)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence            456777775443  34788875 578999999999998764  345789999999999999886532    355667766


Q ss_pred             eeeeccCC--------ceeEE-----------EeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCC
Q 021480           81 LTLMNFDG--------FTHLN-----------IDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPG  139 (312)
Q Consensus        81 L~l~~~~~--------~~~~~-----------i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~  139 (312)
                      |++.++..        +..+.           ...++|+.|.+.++ +... .+..+++|++++++.+.....       
T Consensus       191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-------  263 (390)
T 3o6n_A          191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-------  263 (390)
T ss_dssp             EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-------
T ss_pred             eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-------
Confidence            66655421        11111           12358999998874 2222 356789999999975432110       


Q ss_pred             cchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          140 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       140 ~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                       .   ...+..+++|+.|++..+.+..+     +... ..+++|+.|.++.+.-.     .++..+..+++|+.|++..+
T Consensus       264 -~---~~~~~~l~~L~~L~L~~n~l~~~-----~~~~-~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          264 -M---YHPFVKMQRLERLYISNNRLVAL-----NLYG-QPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             -E---SGGGTTCSSCCEEECCSSCCCEE-----ECSS-SCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSS
T ss_pred             -C---hhHccccccCCEEECCCCcCccc-----Cccc-CCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCC
Confidence             0   13366789999999998866432     1111 24789999998544221     23444567899999999876


Q ss_pred             cCCCCCcccccccccccccccccCceEEEEEe
Q 021480          220 PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG  251 (312)
Q Consensus       220 ~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~  251 (312)
                      .....            +-...++|+.+.+.+
T Consensus       329 ~i~~~------------~~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          329 SIVTL------------KLSTHHTLKNLTLSH  348 (390)
T ss_dssp             CCCCC------------CCCTTCCCSEEECCS
T ss_pred             cccee------------CchhhccCCEEEcCC
Confidence            53210            112247888888875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.80  E-value=6.6e-10  Score=94.40  Aligned_cols=197  Identities=15%  Similarity=0.182  Sum_probs=120.3

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      +++++|+++...  ...+|. .+..+++|+.|++++|.+..  +..+..+++|++|+++++.+++. ....+..++.|++
T Consensus        28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCE
T ss_pred             CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccE
Confidence            356777764333  235555 56778999999999997754  34578899999999999987542 1235678999999


Q ss_pred             eeeeccCCce--eEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021480           81 LTLMNFDGFT--HLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP  152 (312)
Q Consensus        81 L~l~~~~~~~--~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  152 (312)
                      |++.++....  ...+ ..++|+.|.+.++ +..    -.+..+++|+.++++.+.....       ....+ .-+..++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~-~~l~~L~  176 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------YCTDL-RVLHQMP  176 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-------CGGGG-HHHHTCT
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-------CHHHh-hhhhhcc
Confidence            9998875321  1111 3478999988874 222    2356789999998875432110       01111 2233344


Q ss_pred             Ccc-EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          153 HIR-RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       153 ~l~-~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      .+. .|+++.+.+..+..    . .. ...+|+.|.++.+.-  ..+  ....+..+++|+.|++..++.
T Consensus       177 ~l~l~L~ls~n~l~~~~~----~-~~-~~~~L~~L~L~~n~l--~~~--~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          177 LLNLSLDLSLNPMNFIQP----G-AF-KEIRLKELALDTNQL--KSV--PDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             TCCEEEECCSSCCCEECT----T-SS-CSCCEEEEECCSSCC--SCC--CTTTTTTCCSCCEEECCSSCB
T ss_pred             ccceeeecCCCcccccCc----c-cc-CCCcccEEECCCCce--eec--CHhHhcccccccEEEccCCcc
Confidence            443 77777765532211    1 11 133688877743321  111  133567889999999877653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.79  E-value=2.8e-09  Score=90.24  Aligned_cols=177  Identities=20%  Similarity=0.173  Sum_probs=101.1

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+++....  ..+|. .+..+++|+.|++++|.+.. + ..+..+++|++|+++++.++.- ....+..++.|++
T Consensus        37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence            3567777754432  35665 57789999999999998865 3 3357899999999999987642 1235678999999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      |++.++....                 .....+..+++|+.++++.+.....         +  ...+..+++|+.|++.
T Consensus       114 L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~~---------~--~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A          114 LRLDRNQLKS-----------------LPPRVFDSLTKLTYLSLGYNELQSL---------P--KGVFDKLTSLKELRLY  165 (270)
T ss_dssp             EECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECC
T ss_pred             EECCCCccCe-----------------eCHHHhCcCcCCCEEECCCCcCCcc---------C--HhHccCCcccceeEec
Confidence            9998774321                 1111233456666666653321100         0  0124456666666666


Q ss_pred             eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      .+.+..+    .+..+. .+++|++|.+..+.-  ..+  ....+..+++|+.|.+..++
T Consensus       166 ~n~l~~~----~~~~~~-~l~~L~~L~L~~N~l--~~~--~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          166 NNQLKRV----PEGAFD-KLTELKTLKLDNNQL--KRV--PEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             SSCCSCC----CTTTTT-TCTTCCEEECCSSCC--SCC--CTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCcEe----ChhHhc-cCCCcCEEECCCCcC--CcC--CHHHhccccCCCEEEecCCC
Confidence            5544211    111111 255666666632211  100  11234566677777666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.79  E-value=1.6e-08  Score=93.71  Aligned_cols=136  Identities=18%  Similarity=0.160  Sum_probs=94.0

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      ++++......+|..+.  ++|++|++++|.+...  ..+.++++|++|+|+++.+++. .+..+..++.|++|+++++.-
T Consensus         5 l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             EECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCC
T ss_pred             EecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCce
Confidence            3344444457887765  8999999999988653  3578899999999999987642 234578899999999998854


Q ss_pred             ceeEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc--cEEEEe
Q 021480           89 FTHLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI--RRLEIQ  160 (312)
Q Consensus        89 ~~~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~l~  160 (312)
                      . .+.. ..++|++|.++++ +..    -.+..+++|+.++++.+....              .-+..++++  +.|++.
T Consensus        82 ~-~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           82 V-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             C-EEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEEEEEE
T ss_pred             e-ecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--------------hhccccccceeeEEEee
Confidence            3 2221 5678999998874 222    246688999999987543210              113455666  888887


Q ss_pred             eeeh
Q 021480          161 SYFL  164 (312)
Q Consensus       161 ~~~~  164 (312)
                      .+.+
T Consensus       147 ~n~l  150 (520)
T 2z7x_B          147 LGET  150 (520)
T ss_dssp             ECTT
T ss_pred             cccc
Confidence            6644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.78  E-value=4.5e-09  Score=90.82  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=116.3

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      +++++|+++.+..  ..+|. +..+++|+.|++++|.+...+.+..+++|+.|+++++.+++-  .. +..+++|+.|++
T Consensus        63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEEC
Confidence            4677777754432  35565 778999999999999988877788999999999999998652  22 789999999999


Q ss_pred             eccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           84 MNFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        84 ~~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      .+|...... --..++|+.|.+.++ +..+ .+..+++|+.++++.+...         ..+    .+..+++|+.|+++
T Consensus       137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------~~~----~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---------DIS----PLASLPNLIEVHLK  203 (308)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---------CCG----GGGGCTTCCEEECT
T ss_pred             CCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC---------cCh----hhcCCCCCCEEEcc
Confidence            988532110 113478999999874 2222 2668899999998754321         111    16688999999999


Q ss_pred             eeehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480          161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      .+.+..+.      .+ ..+++|+.|.+..+
T Consensus       204 ~N~l~~~~------~l-~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          204 NNQISDVS------PL-ANTSNLFIVTLTNQ  227 (308)
T ss_dssp             TSCCCBCG------GG-TTCTTCCEEEEEEE
T ss_pred             CCccCccc------cc-cCCCCCCEEEccCC
Confidence            88664221      12 24789999999654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.78  E-value=5.1e-09  Score=82.00  Aligned_cols=134  Identities=20%  Similarity=0.143  Sum_probs=72.3

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      +++++|+++.+......+|..+..+++|+.|++++|.+.....+..+++|+.|++++|.+++. ++..+..+|.|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence            345555554332111255665566666677777666655544556666677777766666442 3444555666666666


Q ss_pred             eccCCceeEEEeCCCcceEEEeecccc-eeeecCCcceEEEEeEEEeecCCccCCCCcchh-HHHHhhcCCCccEEEEee
Q 021480           84 MNFDGFTHLNIDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK-LLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        84 ~~~~~~~~~~i~~p~L~~L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~l~~L~l~~  161 (312)
                      .+|....                 +.. -.+..+++|+.++++.+...         ..+. ....+..+++|+.|++..
T Consensus       103 s~N~l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~---------~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          103 SGNKLKD-----------------ISTLEPLKKLECLKSLDLFNCEVT---------NLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             BSSSCCS-----------------SGGGGGGSSCSCCCEEECCSSGGG---------TSTTHHHHHHTTCSSCCEETTEE
T ss_pred             cCCccCc-----------------chhHHHHhcCCCCCEEEeeCCcCc---------chHHHHHHHHHhCccCcEecCCC
Confidence            6553211                 111 12345677777777643211         0111 113466777788777766


Q ss_pred             eeh
Q 021480          162 YFL  164 (312)
Q Consensus       162 ~~~  164 (312)
                      +..
T Consensus       157 n~~  159 (168)
T 2ell_A          157 RED  159 (168)
T ss_dssp             TTS
T ss_pred             CCh
Confidence            543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.77  E-value=3.4e-09  Score=100.05  Aligned_cols=11  Identities=18%  Similarity=0.208  Sum_probs=7.2

Q ss_pred             ccceeEEecCC
Q 021480          271 VLETMTIKPAS  281 (312)
Q Consensus       271 ~Le~~~i~~~~  281 (312)
                      .|+.+.+..++
T Consensus       546 ~L~~l~l~~N~  556 (606)
T 3vq2_A          546 SLAFFNLTNNS  556 (606)
T ss_dssp             TCCEEECCSCC
T ss_pred             cCcEEEccCCC
Confidence            47777776655

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.77  E-value=1.7e-10  Score=102.18  Aligned_cols=208  Identities=14%  Similarity=0.086  Sum_probs=131.6

Q ss_pred             CCceEEEEEecCCcceecC-----CCcccCC-cceEEEeeceeeCC--CCCCCC-----CcccceeeecceeeCh---HH
Q 021480            4 SCVKEFILEIWKGQRYKVP-----SSLFLCQ-NLIHLELFNCLLKP--PSTFKG-----FRNLKSLDLQHITLSQ---DV   67 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~l~~--~~~~~~-----l~~L~~L~L~~~~~~~---~~   67 (312)
                      +++++|+++.+..  ...+     ..+..++ +|+.|+|++|.+..  +..+..     +++|++|+|++|.+++   ..
T Consensus        22 ~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             TTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            3578888754432  2233     3445567 89999999998865  222333     3899999999999864   34


Q ss_pred             HHHHHhCC-cccceeeeeccCCceeEE------Ee--CCCcceEEEeec-ccc-----e--eeecCC-cceEEEEeEEEe
Q 021480           68 FENLISSS-PTLERLTLMNFDGFTHLN------ID--APNLQFFDIGGV-FDD-----V--TFENTF-HLALVSIGLYVN  129 (312)
Q Consensus        68 l~~ll~~c-p~Le~L~l~~~~~~~~~~------i~--~p~L~~L~~~~~-~~~-----~--~~~~~~-~L~~l~l~~~~~  129 (312)
                      +...+..+ +.|++|++++|.......      +.  ..+|+.|.++++ +..     +  .+...+ +|+.++++.+..
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence            56667777 899999999886322100      11  258999999874 221     1  123444 899999875432


Q ss_pred             ecCCccCCCCcchhHHHHhhcC-CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcC
Q 021480          130 VKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSS  208 (312)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~  208 (312)
                      ..       .....+...+... ++|+.|+++.+.+........+..+....++|++|.++.+.-...+...+...++.+
T Consensus       180 ~~-------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          180 AS-------KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             GG-------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             ch-------hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            11       1223445566677 499999999887642111011111111124899999965533333444677788999


Q ss_pred             CCcceEEEEecc
Q 021480          209 PNLQELEMLARP  220 (312)
Q Consensus       209 p~Le~L~l~~~~  220 (312)
                      ++|+.|.+..+.
T Consensus       253 ~~L~~L~L~~n~  264 (362)
T 3goz_A          253 KHLQTVYLDYDI  264 (362)
T ss_dssp             TTCSEEEEEHHH
T ss_pred             CCccEEEeccCC
Confidence            999999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.77  E-value=3.2e-09  Score=100.21  Aligned_cols=187  Identities=20%  Similarity=0.115  Sum_probs=109.3

Q ss_pred             CCceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+++.+.  ...+|..+ ..+++|+.|+|++|.+..  +..+..+++|++|++++|.+++..    +..+|.|+.
T Consensus       123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~  196 (597)
T 3oja_B          123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  196 (597)
T ss_dssp             TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence            456777775443  34788875 578999999999998764  446889999999999999887532    466788888


Q ss_pred             eeeeccCCceeEEEeCCC---------------------cceEEEeec-ccc-eeeecCCcceEEEEeEEEeecCCccCC
Q 021480           81 LTLMNFDGFTHLNIDAPN---------------------LQFFDIGGV-FDD-VTFENTFHLALVSIGLYVNVKNDQAMG  137 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~---------------------L~~L~~~~~-~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~  137 (312)
                      |++.++.... +. ..++                     |+.|.+.++ +.. ..+..+++|+.++++.+....      
T Consensus       197 L~l~~n~l~~-l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~------  268 (597)
T 3oja_B          197 ANVSYNLLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------  268 (597)
T ss_dssp             EECCSSCCSE-EE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------
T ss_pred             hhcccCcccc-cc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC------
Confidence            8887764321 11 1234                     444444442 111 123455666666665332110      


Q ss_pred             CCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021480          138 PGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML  217 (312)
Q Consensus       138 ~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~  217 (312)
                        ..   ...++.+++|+.|+++++.+..+     +... ..+++|+.|.++.+.-.     .++..+..+|+|+.|++.
T Consensus       269 --~~---~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~-~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          269 --IM---YHPFVKMQRLERLYISNNRLVAL-----NLYG-QPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLD  332 (597)
T ss_dssp             --EE---SGGGTTCSSCCEEECTTSCCCEE-----ECSS-SCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECC
T ss_pred             --CC---HHHhcCccCCCEEECCCCCCCCC-----Cccc-ccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECC
Confidence              00   12245567777777766654322     1111 23667777777433211     133334556777777776


Q ss_pred             ecc
Q 021480          218 ARP  220 (312)
Q Consensus       218 ~~~  220 (312)
                      .+.
T Consensus       333 ~N~  335 (597)
T 3oja_B          333 HNS  335 (597)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.76  E-value=5.8e-10  Score=102.65  Aligned_cols=168  Identities=15%  Similarity=0.094  Sum_probs=116.6

Q ss_pred             CCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEe
Q 021480           28 CQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIG  105 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~  105 (312)
                      +++|+.|+|++|.+..  +..+..+++|++|+|++|.+++.. +  +..++.|++|++++|.. ..+. ..|+|+.|.+.
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l-~~l~-~~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL-VGPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEE-EEEE-ECTTCCEEECC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcC-CCCC-CCCCcCEEECc
Confidence            4589999999998875  346889999999999999886431 1  78999999999998853 2333 34899999999


Q ss_pred             ec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021480          106 GV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN  184 (312)
Q Consensus       106 ~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~  184 (312)
                      ++ +..+....+++|+.++++.+....        ..   ...++.+++|+.|+++.+.+..    ..+..+...+++|+
T Consensus       108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~--------~~---~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~  172 (487)
T 3oja_A          108 NNNISRVSCSRGQGKKNIYLANNKITM--------LR---DLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLE  172 (487)
T ss_dssp             SSCCCCEEECCCSSCEEEECCSSCCCS--------GG---GBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCC
T ss_pred             CCcCCCCCccccCCCCEEECCCCCCCC--------CC---chhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCccc
Confidence            84 444445567899999987543211        00   1225678999999999886532    22222332468899


Q ss_pred             eEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          185 YLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       185 ~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      .|.++.+.-.  +   ++. ...+|+|+.|++..+..
T Consensus       173 ~L~Ls~N~l~--~---~~~-~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          173 HLNLQYNFIY--D---VKG-QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             EEECTTSCCC--E---EEC-CCCCTTCCEEECCSSCC
T ss_pred             EEecCCCccc--c---ccc-cccCCCCCEEECCCCCC
Confidence            9988433211  1   122 23589999999987754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.75  E-value=5.4e-10  Score=96.78  Aligned_cols=226  Identities=16%  Similarity=0.139  Sum_probs=129.3

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC---CCCCC-------CCcccceeeecceeeChHHHHHH-HhCCcccceeeeeccCC
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP---PSTFK-------GFRNLKSLDLQHITLSQDVFENL-ISSSPTLERLTLMNFDG   88 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~-------~l~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~l~~~~~   88 (312)
                      .+|..+...  |+.|+|+++.+..   +..+.       ++++|++|+|+++.+++.....+ +..++.|++|+++++..
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  133 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW  133 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence            556655544  8888888887632   22222       58899999999998865322222 37889999999988753


Q ss_pred             cee---E-EE---eCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHH-hhcCCCccE
Q 021480           89 FTH---L-NI---DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF-FVHLPHIRR  156 (312)
Q Consensus        89 ~~~---~-~i---~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~l~~  156 (312)
                      ...   + .+   ..++|+.|.+.++ +..   -.+..+++|+.++++.+....        .......+ +..+++|+.
T Consensus       134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~  205 (312)
T 1wwl_A          134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------ERGLISALCPLKFPTLQV  205 (312)
T ss_dssp             SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH--------HHHHHHHSCTTSCTTCCE
T ss_pred             cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc--------chHHHHHHHhccCCCCCE
Confidence            221   0 00   1278999998874 222   235678899999887542110        00011111 267889999


Q ss_pred             EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-HHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480          157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD  235 (312)
Q Consensus       157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~  235 (312)
                      |++..+.+..+..  .+..+...+++|++|.++.+.-...    . ...+..+++|+.|++..+...            .
T Consensus       206 L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~------------~  267 (312)
T 1wwl_A          206 LALRNAGMETPSG--VCSALAAARVQLQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLK------------Q  267 (312)
T ss_dssp             EECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCS------------S
T ss_pred             EECCCCcCcchHH--HHHHHHhcCCCCCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccC------------h
Confidence            9998776532111  1101111346888888843321110    1 123345689999988766432            1


Q ss_pred             cccccccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480          236 HWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       236 ~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      .|.....+|+.+.+.+  +.+.+.        +.+.+.|+.+.+..+.
T Consensus       268 ip~~~~~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          268 VPKGLPAKLSVLDLSYNRLDRNPS--------PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCSSCCSEEEEEECCSSCCCSCCC--------TTTSCEEEEEECTTCT
T ss_pred             hhhhccCCceEEECCCCCCCCChh--------HhhCCCCCEEeccCCC
Confidence            1122226777777764  222211        4567888888887664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.74  E-value=2.5e-09  Score=91.70  Aligned_cols=163  Identities=17%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEEe
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDIG  105 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~~  105 (312)
                      +++|+.|++++|.+...+.+..+++|+.|+++++.+++-  .. +..++.|+.|++.+|....  . --..++|+.|.+.
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence            455666666666555444455566666666666655432  11 5566666666666553211  0 0022455555555


Q ss_pred             ec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480          106 GV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  183 (312)
Q Consensus       106 ~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L  183 (312)
                      ++ +..+ .+..+++|+.++++.+...         .   + ..+..+++|+.|+++.+.+..+    .+  + ..+++|
T Consensus       121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~---------~---~-~~l~~l~~L~~L~L~~N~l~~~----~~--l-~~l~~L  180 (291)
T 1h6t_A          121 HNGISDINGLVHLPQLESLYLGNNKIT---------D---I-TVLSRLTKLDTLSLEDNQISDI----VP--L-AGLTKL  180 (291)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCC---------C---C-GGGGGCTTCSEEECCSSCCCCC----GG--G-TTCTTC
T ss_pred             CCcCCCChhhcCCCCCCEEEccCCcCC---------c---c-hhhccCCCCCEEEccCCccccc----hh--h-cCCCcc
Confidence            42 2111 2456777888877643211         0   1 2356678888888877655321    11  2 236677


Q ss_pred             ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ++|.++.+.-  .+   +.. +..+++|+.|++..+.
T Consensus       181 ~~L~L~~N~i--~~---l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          181 QNLYLSKNHI--SD---LRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CEEECCSSCC--CB---CGG-GTTCTTCSEEEEEEEE
T ss_pred             CEEECCCCcC--CC---Chh-hccCCCCCEEECcCCc
Confidence            8777743321  11   222 5778888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.74  E-value=1.4e-09  Score=93.22  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      +++++++  .......+|..+.  ++++.|+|++|.+..  +..+..+++|+.|+|+++.+++-.  . ...++.|+.|+
T Consensus        11 ~l~~l~~--~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNC--DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEEC--TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEE
T ss_pred             CccEEEC--CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEE
Confidence            3455554  3333457777664  689999999998764  456788999999999999876421  1 16889999999


Q ss_pred             eeccCCceeEE---EeCCCcceEEEeec-ccc---eeeecCCcceEEEEe
Q 021480           83 LMNFDGFTHLN---IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIG  125 (312)
Q Consensus        83 l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~  125 (312)
                      ++++.... +.   -..++|+.|.++++ +..   -.+..+++|+.++++
T Consensus        84 Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (290)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             CCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence            98874321 11   12245555555542 111   123445555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.72  E-value=1.1e-08  Score=93.38  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=40.9

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      ++++.|+++.+...  .+|  +..+++|+.|++++|.+...+ ++.+++|++|+++++.+++-  +  +..++.|++|++
T Consensus        64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence            34556665433321  233  455666666666666665532 55666666666666665442  1  455566666666


Q ss_pred             ecc
Q 021480           84 MNF   86 (312)
Q Consensus        84 ~~~   86 (312)
                      .+|
T Consensus       135 ~~N  137 (457)
T 3bz5_A          135 ARN  137 (457)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.71  E-value=2.9e-09  Score=92.93  Aligned_cols=106  Identities=20%  Similarity=0.211  Sum_probs=76.4

Q ss_pred             eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-e
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-D   95 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-~   95 (312)
                      ..+|..+.  ++|+.|++++|.+..  +..+..+++|++|+++++.+++. .+..+..++.|++|++.++.... +.. .
T Consensus        46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-l~~~~  121 (332)
T 2ft3_A           46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHLVE-IPPNL  121 (332)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCCCS-CCSSC
T ss_pred             cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcCCc-cCccc
Confidence            46776653  689999999997754  44688999999999999987642 23456889999999999875321 110 1


Q ss_pred             CCCcceEEEeec-ccce---eeecCCcceEEEEeEEE
Q 021480           96 APNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYV  128 (312)
Q Consensus        96 ~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~  128 (312)
                      .++|+.|.+.++ +..+   .+..+++|+.++++.+.
T Consensus       122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            178999999874 2222   35678999999987554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.71  E-value=2.7e-09  Score=100.74  Aligned_cols=183  Identities=17%  Similarity=0.142  Sum_probs=87.6

Q ss_pred             cccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-eCCCcceEE
Q 021480           25 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFD  103 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-~~p~L~~L~  103 (312)
                      +..+++|+.|+++++.+...+.+..+++|++|++.+|.+.  .++.+  .+|.|++|++.+|.....+.+ ..|+|+.|.
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            5556777777777776655446666777777777777662  23332  667777777766643322211 335566665


Q ss_pred             Eeec-cc-----ceeeecCCcceEEEEeEEEeecCCccCC---------CC-----cchhHHHHhhcCCCccEEEEeeee
Q 021480          104 IGGV-FD-----DVTFENTFHLALVSIGLYVNVKNDQAMG---------PG-----NSCKLLRFFVHLPHIRRLEIQSYF  163 (312)
Q Consensus       104 ~~~~-~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------~~-----~~~~~~~~l~~l~~l~~L~l~~~~  163 (312)
                      +.++ +.     ...+..+++|+.++++.+........+.         ..     .... ...+..+++++.|+++.+.
T Consensus       357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~  435 (606)
T 3vq2_A          357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-FSAFLSLEKLLYLDISYTN  435 (606)
T ss_dssp             CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT-TTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC-hhhhhccccCCEEECcCCC
Confidence            5542 11     1122345555555554322110000000         00     0000 0124455666666666554


Q ss_pred             hhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          164 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       164 ~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      +.    +..+..+. .+++|++|.+..+.-...   .++..+..+++|+.|++..+.
T Consensus       436 l~----~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~  484 (606)
T 3vq2_A          436 TK----IDFDGIFL-GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQ  484 (606)
T ss_dssp             CE----ECCTTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSC
T ss_pred             CC----ccchhhhc-CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCc
Confidence            32    12222222 356677666632211100   134455677777777776553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.70  E-value=1.9e-08  Score=80.99  Aligned_cols=143  Identities=15%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|+++....  ..+| .+..+++|+.|++++|.+..++.+..+++|++|+++++.+++... ..++.+|.|+.|++.
T Consensus        45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEec
Confidence            567777754432  3666 577889999999999977776678889999999999988875322 336788999999998


Q ss_pred             ccCCcee---EEEeCCCcceEEEeec--ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEE
Q 021480           85 NFDGFTH---LNIDAPNLQFFDIGGV--FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLE  158 (312)
Q Consensus        85 ~~~~~~~---~~i~~p~L~~L~~~~~--~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~  158 (312)
                      +|.....   .--..++|+.|.++++  ...+ .+..+++|+.++++.+...         ..    ..+..+++|+.|+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~---------~~----~~l~~l~~L~~L~  187 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH---------DY----RGIEDFPKLNQLY  187 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC---------CC----TTGGGCSSCCEEE
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc---------Ch----HHhccCCCCCEEE
Confidence            8753220   0013478899988874  3222 3567899999999754321         11    1366789999999


Q ss_pred             Eeeeeh
Q 021480          159 IQSYFL  164 (312)
Q Consensus       159 l~~~~~  164 (312)
                      +.++.+
T Consensus       188 l~~N~i  193 (197)
T 4ezg_A          188 AFSQTI  193 (197)
T ss_dssp             ECBC--
T ss_pred             eeCccc
Confidence            998865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.68  E-value=1.3e-08  Score=96.00  Aligned_cols=108  Identities=15%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      .+++.|+++.+..  ..+|.   .+++|++|+|++|.+...+.  .+++|+.|++++|.+++  ++.   ..+.|+.|++
T Consensus        61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CCC---CCCCcCEEEC
Confidence            4677777754433  36676   46889999999998776433  77889999998887754  111   5677888888


Q ss_pred             eccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEe
Q 021480           84 MNFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIG  125 (312)
Q Consensus        84 ~~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~  125 (312)
                      .+|... .+....++|+.|.++++ +..+. ...++|+.++++
T Consensus       129 ~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~  169 (622)
T 3g06_A          129 FGNQLT-SLPVLPPGLQELSVSDNQLASLP-ALPSELCKLWAY  169 (622)
T ss_dssp             CSSCCS-CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECC
T ss_pred             CCCCCC-cCCCCCCCCCEEECcCCcCCCcC-CccCCCCEEECC
Confidence            776422 23233477777777763 22211 123455555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.68  E-value=3e-08  Score=92.79  Aligned_cols=65  Identities=12%  Similarity=0.102  Sum_probs=36.0

Q ss_pred             hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ..++++++|++..+.+.    +..+..+. .+++|+.|.+..+.  ..++..++..+..+++|+.|++..+.
T Consensus       350 ~~l~~L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~L~~N~--l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFT----DSVFQGCS-TLKRLQTLILQRNG--LKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             SSCCCCCEEECCSSCCC----TTTTTTCC-SCSSCCEEECCSSC--CCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             cCCCCceEEECCCCccc----cchhhhhc-ccCCCCEEECCCCC--cCCcccchhhhcCCCCCCEEECCCCc
Confidence            34556666666655432    22222222 36677777774332  22222355667788888888887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.68  E-value=4.4e-09  Score=87.30  Aligned_cols=178  Identities=13%  Similarity=0.126  Sum_probs=107.2

Q ss_pred             eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCceeEE--
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHLN--   93 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--   93 (312)
                      ..+|. +  .++|+.|+++++.+..  +..+.++++|++|+++++. ++.- ....+..++.|++|++.+|..+..+.  
T Consensus        24 ~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           24 QRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             cccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            35666 3  3489999999998765  3357889999999999986 6431 11246789999999999854443332  


Q ss_pred             --EeCCCcceEEEeec-cccee-eecCCcce---EEEEeEEEeecCCccCCCCcchhHHHHhhcCCCcc-EEEEeeeehh
Q 021480           94 --IDAPNLQFFDIGGV-FDDVT-FENTFHLA---LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLK  165 (312)
Q Consensus        94 --i~~p~L~~L~~~~~-~~~~~-~~~~~~L~---~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~  165 (312)
                        -..++|+.|.+.++ +..+. +..+++|+   .++++.+.....        .+  ...+.++++++ .|+++.+.+.
T Consensus       100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~--------i~--~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS--------IP--VNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE--------EC--TTTTTTTBSSEEEEECCSCCCC
T ss_pred             HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhh--------cC--cccccchhcceeEEEcCCCCCc
Confidence              14578888888873 22221 44566666   777764411100        00  12255678888 8888777554


Q ss_pred             hhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-HHhhhcC-CCcceEEEEecc
Q 021480          166 YLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-LCLLRSS-PNLQELEMLARP  220 (312)
Q Consensus       166 ~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~-p~Le~L~l~~~~  220 (312)
                      .++.     .... ..+|++|.+..+- ...   .+ ...+..+ ++|+.|++..+.
T Consensus       170 ~i~~-----~~~~-~~~L~~L~L~~n~-~l~---~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          170 SVQG-----YAFN-GTKLDAVYLNKNK-YLT---VIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             EECT-----TTTT-TCEEEEEECTTCT-TCC---EECTTTTTTCSBCCSEEECTTCC
T ss_pred             ccCH-----hhcC-CCCCCEEEcCCCC-Ccc---cCCHHHhhccccCCcEEECCCCc
Confidence            2211     1111 2467777664331 011   12 2345677 888888886543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.67  E-value=4.9e-08  Score=91.33  Aligned_cols=135  Identities=15%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             EecCCcceecCCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      +++......+|..+.  ++|++|++++|.+...  ..+.++++|++|+|++|.+++- .+..+.+++.|++|+++++.-.
T Consensus        37 ~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           37 DYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             ECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC
T ss_pred             EcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC
Confidence            344444456887664  7899999999988762  4688999999999999987642 2345688999999999988532


Q ss_pred             eeEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc--cEEEEee
Q 021480           90 THLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI--RRLEIQS  161 (312)
Q Consensus        90 ~~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~l~~  161 (312)
                       .+.. ..++|++|.++++ +..    -.+.++++|+.++++.+....          .    -+..++++  +.|++..
T Consensus       114 -~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----------~----~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          114 -NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----------L----DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             -EECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----------T----TTGGGTTSCEEEEEEEE
T ss_pred             -ccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----------C----chhhhhhceeeEEEeec
Confidence             1110 5678999999884 222    246688999999987543211          0    12334444  8888877


Q ss_pred             eeh
Q 021480          162 YFL  164 (312)
Q Consensus       162 ~~~  164 (312)
                      +.+
T Consensus       179 n~l  181 (562)
T 3a79_B          179 VSY  181 (562)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.67  E-value=7.7e-09  Score=87.28  Aligned_cols=145  Identities=16%  Similarity=0.123  Sum_probs=95.7

Q ss_pred             CcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEE
Q 021480           24 SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD  103 (312)
Q Consensus        24 ~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~  103 (312)
                      .+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++-  .. +..++.|+.|++++|....--.+..++|+.|.
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF  112 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence            4567789999999999887766788999999999999988653  22 78999999999998853210001116788887


Q ss_pred             Eeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480          104 IGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  181 (312)
Q Consensus       104 ~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~  181 (312)
                      +.++ +..+ .+..+++|+.++++.+...         ..    ..+..+++|+.|+++.+.+..+      ..+. .++
T Consensus       113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~---------~~----~~l~~l~~L~~L~L~~N~i~~~------~~l~-~l~  172 (263)
T 1xeu_A          113 LDNNELRDTDSLIHLKNLEILSIRNNKLK---------SI----VMLGFLSKLEVLDLHGNEITNT------GGLT-RLK  172 (263)
T ss_dssp             CCSSCCSBSGGGTTCTTCCEEECTTSCCC---------BC----GGGGGCTTCCEEECTTSCCCBC------TTST-TCC
T ss_pred             ccCCccCCChhhcCcccccEEECCCCcCC---------CC----hHHccCCCCCEEECCCCcCcch------HHhc-cCC
Confidence            7763 2222 2456777888777543211         11    1355677788888877655321      1122 366


Q ss_pred             CcceEEEEEE
Q 021480          182 DLNYLSIRIN  191 (312)
Q Consensus       182 ~L~~L~l~~~  191 (312)
                      +|+.|.+..+
T Consensus       173 ~L~~L~l~~N  182 (263)
T 1xeu_A          173 KVNWIDLTGQ  182 (263)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCEEeCCCC
Confidence            7777777543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.64  E-value=4.1e-09  Score=99.28  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=76.0

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--EeCCCcceEEEe
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIG  105 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--i~~p~L~~L~~~  105 (312)
                      +++|+.|++++|.+...+.+..+++|+.|+|++|.+.+-.  . +..++.|+.|+|.+|.... +.  -..++|+.|.+.
T Consensus        42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLE  117 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECT
T ss_pred             CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEec
Confidence            3455555555555544444555555555555555543311  1 4555555555555543111 00  012445555554


Q ss_pred             ec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480          106 GV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  183 (312)
Q Consensus       106 ~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L  183 (312)
                      ++ +..+ .+..+++|+.++++.+...         .   + ..+..+++|+.|+++.+.+..+    .+  + ..+++|
T Consensus       118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~---l-~~l~~l~~L~~L~Ls~N~l~~~----~~--l-~~l~~L  177 (605)
T 1m9s_A          118 HNGISDINGLVHLPQLESLYLGNNKIT---------D---I-TVLSRLTKLDTLSLEDNQISDI----VP--L-AGLTKL  177 (605)
T ss_dssp             TSCCCCCGGGGGCTTCSEEECCSSCCC---------C---C-GGGGSCTTCSEEECCSSCCCCC----GG--G-TTCTTC
T ss_pred             CCCCCCCccccCCCccCEEECCCCccC---------C---c-hhhcccCCCCEEECcCCcCCCc----hh--h-ccCCCC
Confidence            42 1111 1445666666666543211         0   0 2345666677777766544211    11  1 135566


Q ss_pred             ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      ++|.++.+.-  .+   ++ -+..+++|+.|.+..+
T Consensus       178 ~~L~Ls~N~i--~~---l~-~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          178 QNLYLSKNHI--SD---LR-ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             CEEECCSSCC--CB---CG-GGTTCTTCSEEECCSE
T ss_pred             CEEECcCCCC--CC---Ch-HHccCCCCCEEEccCC
Confidence            6666643311  11   12 2456677777766644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.63  E-value=2.3e-08  Score=83.58  Aligned_cols=151  Identities=14%  Similarity=0.076  Sum_probs=98.4

Q ss_pred             CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++.|+++....  ..++. .+..+++|+.|+|++|.+..  +..+..+++|++|+|+++.++.- ....+..++.|++|
T Consensus        36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  112 (251)
T 3m19_A           36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL  112 (251)
T ss_dssp             TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence            566676643332  24444 56788999999999998865  34478999999999999988642 22456788999999


Q ss_pred             eeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           82 TLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        82 ~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      ++.++....                 +....+..+++|+.++++.+....-         +  ...+..+++|+.|++..
T Consensus       113 ~L~~N~l~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~---------~--~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          113 YLGGNQLKS-----------------LPSGVFDRLTKLKELRLNTNQLQSI---------P--AGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             ECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCS
T ss_pred             EcCCCcCCC-----------------cChhHhccCCcccEEECcCCcCCcc---------C--HHHcCcCcCCCEEECCC
Confidence            998874321                 1111234678888888865432110         0  12355788999999988


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      +.+..+    .+..+ ..+++|++|.+..+
T Consensus       165 N~l~~~----~~~~~-~~l~~L~~L~l~~N  189 (251)
T 3m19_A          165 NQLQSV----PHGAF-DRLGKLQTITLFGN  189 (251)
T ss_dssp             SCCSCC----CTTTT-TTCTTCCEEECCSC
T ss_pred             CcCCcc----CHHHH-hCCCCCCEEEeeCC
Confidence            765322    11122 24678888888543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.63  E-value=5.1e-09  Score=80.26  Aligned_cols=132  Identities=20%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      .++++|+++.+......+|..+..+++|+.|++++|.+.....+..+++|+.|++++|.+++. ++..+..++.|+.|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence            456777765433211267777788899999999999877666678889999999999988653 5666777899999999


Q ss_pred             eccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           84 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        84 ~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      ++|.... +               .....+..+++|+.++++.+.....        .......+..+++++.|++.
T Consensus        96 s~N~i~~-~---------------~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKD-L---------------STIEPLKKLENLKSLDLFNCEVTNL--------NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCS-H---------------HHHGGGGGCTTCCEEECTTCGGGGS--------TTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCC-h---------------HHHHHHhhCCCCCEEeCcCCcccch--------HHHHHHHHHHCCCcccccCC
Confidence            8775321 0               0001245678888888865432110        01012356778888888653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.62  E-value=2.5e-09  Score=102.35  Aligned_cols=67  Identities=15%  Similarity=0.099  Sum_probs=32.8

Q ss_pred             hhcCCCccEEEEeeeehhhhcccCCCCCC---CcccCCcceEEEEEEcCChhhHHHHH-HhhhcCCCcceEEEEec
Q 021480          148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRL---PRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLAR  219 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l---~~~f~~L~~L~l~~~~~~~~~~~~l~-~~L~~~p~Le~L~l~~~  219 (312)
                      +.++++|+.|+++.+.+..+.....|...   -..+++|+.|.++.+.-  .   .++ ..+..+++|+.|++..+
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l--~---~i~~~~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF--D---EIPVEVFKDLFELKIIDLGLN  570 (680)
T ss_dssp             TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC--C---CCCTTTTTTCTTCCEEECCSS
T ss_pred             hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC--C---CCCHHHcccccCcceeECCCC
Confidence            44566777777766655433222222110   12345666666632211  1   122 23566777777777554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.61  E-value=1.2e-08  Score=86.41  Aligned_cols=176  Identities=16%  Similarity=0.104  Sum_probs=114.6

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|.+....  ...+ ..+..+++|+.|++++|.+...+.+..+++|++|+++++.+++- ....+..++.|++|++.
T Consensus        42 ~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSD--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSC--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCC--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECC
Confidence            45555553222  1233 35778899999999999888777788999999999999987642 23346788999999998


Q ss_pred             ccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480           85 NFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  164 (312)
Q Consensus        85 ~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  164 (312)
                      +|....                 .....+..+++|+.++++.+.....         +  ...+..+++|+.|+++.+.+
T Consensus       118 ~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~~---------~--~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A          118 ENQLQS-----------------LPDGVFDKLTNLTYLNLAHNQLQSL---------P--KGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             TSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCCc-----------------cCHHHhccCCCCCEEECCCCccCcc---------C--HHHhccCccCCEEECCCCCc
Confidence            874321                 1112245688899998875432110         0  12356788999999988765


Q ss_pred             hhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          165 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       165 ~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      .    +..+..+ ..+++|++|.+..+.-.  +  ..+..+..+++|+.|++..++.
T Consensus       170 ~----~~~~~~~-~~l~~L~~L~L~~N~l~--~--~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          170 Q----SLPEGVF-DKLTQLKDLRLYQNQLK--S--VPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             C----CCCTTTT-TTCTTCCEEECCSSCCS--C--CCTTTTTTCTTCCEEECCSSCB
T ss_pred             C----ccCHHHh-cCCccCCEEECCCCcCC--c--cCHHHHhCCcCCCEEEccCCCc
Confidence            3    1111112 24678888888543211  1  1234568889999999977653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.60  E-value=2.5e-08  Score=85.32  Aligned_cols=211  Identities=18%  Similarity=0.085  Sum_probs=134.6

Q ss_pred             cccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--EeCCCcce
Q 021480           25 LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQF  101 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--i~~p~L~~  101 (312)
                      +.++++++.+++.++.+.. |..+  .++++.|+|+++.+++- ....+..++.|+.|++.++.... +.  -..++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCE
Confidence            4567889999999998876 3333  47899999999988642 22457889999999999885322 22  24578999


Q ss_pred             EEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCc
Q 021480          102 FDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR  178 (312)
Q Consensus       102 L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~  178 (312)
                      |.++++ +..+  .+..+++|+.++++.+....-         +  ...+.++++|+.|.+..+.+..+     +.....
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l---------~--~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~  145 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---------P--LGALRGLGELQELYLKGNELKTL-----PPGLLT  145 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC---------C--SSTTTTCTTCCEEECTTSCCCCC-----CTTTTT
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCccc---------C--HHHHcCCCCCCEEECCCCCCCcc-----Chhhcc
Confidence            999874 3222  345788999999875432110         0  12356789999999998866422     222222


Q ss_pred             ccCCcceEEEEEEcCChhhHHHH-HHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe--Eecc
Q 021480          179 PCVDLNYLSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--ISGI  255 (312)
Q Consensus       179 ~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~  255 (312)
                      .+++|+.|.++.+.-  .   .+ ...+..+++|+.|.+..+....-   +..       -....+|+.+.+.+  +...
T Consensus       146 ~l~~L~~L~L~~N~l--~---~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~-------~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          146 PTPKLEKLSLANNNL--T---ELPAGLLNGLENLDTLLLQENSLYTI---PKG-------FFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TCTTCCEEECTTSCC--S---CCCTTTTTTCTTCCEEECCSSCCCCC---CTT-------TTTTCCCSEEECCSCCBCCS
T ss_pred             cccCCCEEECCCCcC--C---ccCHHHhcCcCCCCEEECCCCcCCcc---Chh-------hcccccCCeEEeCCCCccCc
Confidence            467888888843321  1   12 23567889999999977653210   000       01235788888774  3333


Q ss_pred             hhHHHHHHHHHccCc
Q 021480          256 RSELEFIKFVLSNSP  270 (312)
Q Consensus       256 ~~~~~~~~~ll~~~~  270 (312)
                      .....+..++-++..
T Consensus       211 c~~~~l~~wl~~~~~  225 (290)
T 1p9a_G          211 CEILYFRRWLQDNAE  225 (290)
T ss_dssp             GGGHHHHHHHHHTGG
T ss_pred             CccHHHHHHHHhCcc
Confidence            445566666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.60  E-value=8.9e-10  Score=95.31  Aligned_cols=175  Identities=15%  Similarity=0.055  Sum_probs=113.3

Q ss_pred             cCCcceEEEeeceeeCC--CCCC--CCCcccceeeecceeeChH--HH-HHHHhCCcccceeeeeccCCceeE---EEeC
Q 021480           27 LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VF-ENLISSSPTLERLTLMNFDGFTHL---NIDA   96 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l-~~ll~~cp~Le~L~l~~~~~~~~~---~i~~   96 (312)
                      .+++|+.|++++|.+..  +..+  ..+++|++|+|++|.+++.  .+ ..-+..++.|++|++.+|......   --..
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            34679999999998754  4455  7899999999999998752  11 123458999999999988642211   0145


Q ss_pred             CCcceEEEeec-cc-------ceeeecCCcceEEEEeEEEeecCCccCCCCcchh-HHHHhhcCCCccEEEEeeeehhhh
Q 021480           97 PNLQFFDIGGV-FD-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK-LLRFFVHLPHIRRLEIQSYFLKYL  167 (312)
Q Consensus        97 p~L~~L~~~~~-~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~l~~L~l~~~~~~~l  167 (312)
                      ++|++|.++++ +.       ...+..+++|++++++.+...         ..+. ...+++.+++|++|+++.+.+.  
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~~~l~~~l~~L~~L~Ls~N~l~--  237 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------TPTGVCAALAAAGVQPHSLDLSHNSLR--  237 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------CHHHHHHHHHHHTCCCSSEECTTSCCC--
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------chHHHHHHHHhcCCCCCEEECCCCCCC--
Confidence            78999999884 21       122357889999988754321         1111 1234678899999999988663  


Q ss_pred             cccCCCCCCCc--ccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          168 AIGNVPSRLPR--PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       168 ~~~~~~~~l~~--~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                        +..|..+..  .+++|++|.++.+.-.     .++..+  +++|+.|++..+..
T Consensus       238 --~~~p~~~~~~~~~~~L~~L~Ls~N~l~-----~lp~~~--~~~L~~L~Ls~N~l  284 (310)
T 4glp_A          238 --ATVNPSAPRCMWSSALNSLNLSFAGLE-----QVPKGL--PAKLRVLDLSSNRL  284 (310)
T ss_dssp             --CCCCSCCSSCCCCTTCCCEECCSSCCC-----SCCSCC--CSCCSCEECCSCCC
T ss_pred             --ccchhhHHhccCcCcCCEEECCCCCCC-----chhhhh--cCCCCEEECCCCcC
Confidence              222322222  1268999988543211     133322  48999999987753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.59  E-value=3.5e-08  Score=80.87  Aligned_cols=161  Identities=17%  Similarity=0.194  Sum_probs=99.2

Q ss_pred             EecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      ++.......+|..+.  ++|+.|++++|.+..  +..+..+++|+.|+|+++.++.- .+..+.+++.|++|+++++...
T Consensus        17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           17 DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             ECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC
T ss_pred             EcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC
Confidence            344444457777654  789999999998764  34678899999999999987542 2345678899999999877432


Q ss_pred             eeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480           90 THLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI  169 (312)
Q Consensus        90 ~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~  169 (312)
                      .                 +....+..+++|+.++++.+....-        .   ...+..+++|+.|++..+.+..+. 
T Consensus        94 ~-----------------l~~~~f~~l~~L~~L~L~~N~l~~~--------~---~~~~~~l~~L~~L~L~~N~l~~~~-  144 (220)
T 2v9t_B           94 E-----------------LPKSLFEGLFSLQLLLLNANKINCL--------R---VDAFQDLHNLNLLSLYDNKLQTIA-  144 (220)
T ss_dssp             C-----------------CCTTTTTTCTTCCEEECCSSCCCCC--------C---TTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred             c-----------------cCHhHccCCCCCCEEECCCCCCCEe--------C---HHHcCCCCCCCEEECCCCcCCEEC-
Confidence            1                 1122245678888888865432110        0   123557889999999887664221 


Q ss_pred             cCCCCCCCcccCCcceEEEEEE-cCChhhHHHHHHhhhcC
Q 021480          170 GNVPSRLPRPCVDLNYLSIRIN-FNDLEENLAALCLLRSS  208 (312)
Q Consensus       170 ~~~~~~l~~~f~~L~~L~l~~~-~~~~~~~~~l~~~L~~~  208 (312)
                         +..+ ..+++|+.|.+..+ +.-.-++.++...+..-
T Consensus       145 ---~~~~-~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~  180 (220)
T 2v9t_B          145 ---KGTF-SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN  180 (220)
T ss_dssp             ---TTTT-TTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred             ---HHHH-hCCCCCCEEEeCCCCcCCCCccHHHHHHHHhC
Confidence               1112 23677888888432 11112334555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.57  E-value=2.3e-08  Score=81.11  Aligned_cols=162  Identities=18%  Similarity=0.176  Sum_probs=102.2

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      +...+...+|..+  .++|+.|+++++.+..  +..+..+++|++|+++++.+++- ....+..++.|++|++.++....
T Consensus        14 c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           14 CYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             CCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCc
Confidence            3433445677665  3589999999998865  23467899999999999987632 22346788999999998774321


Q ss_pred             eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480           91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG  170 (312)
Q Consensus        91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~  170 (312)
                                       +....+..+++|+.++++.+....-         +  ...+..+++|+.|++..+.+..    
T Consensus        91 -----------------~~~~~~~~l~~L~~L~L~~N~l~~~---------~--~~~~~~l~~L~~L~l~~N~l~~----  138 (208)
T 2o6s_A           91 -----------------LPNGVFDKLTQLKELALNTNQLQSL---------P--DGVFDKLTQLKDLRLYQNQLKS----  138 (208)
T ss_dssp             -----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCSSCCSC----
T ss_pred             -----------------cCHhHhcCccCCCEEEcCCCcCccc---------C--HhHhccCCcCCEEECCCCccce----
Confidence                             1111245678888888764322100         0  1235578899999998775531    


Q ss_pred             CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          171 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       171 ~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                       .+......+++|++|.+..+  .         +...||+|+.|.+..+..
T Consensus       139 -~~~~~~~~l~~L~~L~l~~N--~---------~~~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          139 -VPDGVFDRLTSLQYIWLHDN--P---------WDCTCPGIRYLSEWINKH  177 (208)
T ss_dssp             -CCTTTTTTCTTCCEEECCSC--C---------BCCCTTTTHHHHHHHHHC
T ss_pred             -eCHHHhccCCCccEEEecCC--C---------eecCCCCHHHHHHHHHhC
Confidence             22211124677888777433  1         224677888877765543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=1.1e-08  Score=90.16  Aligned_cols=59  Identities=14%  Similarity=0.176  Sum_probs=38.6

Q ss_pred             CcceEEEeeceeeCC-C---------CCCCCCcccceeeecceeeC--------hHHHHHHHhCCcccceeeeeccC
Q 021480           29 QNLIHLELFNCLLKP-P---------STFKGFRNLKSLDLQHITLS--------QDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~-~---------~~~~~l~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ++++.|.++.+.++. .         .....|++|+.|.+.++...        ..++..++..+|.|++|.+.++.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~  183 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN  183 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence            456677777666441 1         12335778888888665331        12366788899999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.55  E-value=2.4e-09  Score=92.90  Aligned_cols=214  Identities=14%  Similarity=0.073  Sum_probs=134.2

Q ss_pred             cCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480           27 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  104 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~  104 (312)
                      .+++|+.|+|++|.+...  ..+..+++|++|+|+++.+++..  . +..++.|++|++++|... .+. ..++|+.|.+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~-~l~-~~~~L~~L~l  106 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHA  106 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEE-EEE-ECTTCCEEEC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccc-ccc-CCCCcCEEEC
Confidence            467899999999988763  35789999999999999876421  1 788999999999988532 233 3489999999


Q ss_pred             eec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480          105 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  183 (312)
Q Consensus       105 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L  183 (312)
                      .++ +..+....+++|+.++++.+....         ..  ...+..+++|+.|+++.+.+..+    .+..+...+++|
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~---------~~--~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L  171 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITM---------LR--DLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTL  171 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCS---------GG--GBCTGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTC
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCC---------cc--chhhhccCCCCEEECCCCCCCcc----cHHHHhhccCcC
Confidence            884 444445568899999987543211         00  11245689999999988765422    112222246789


Q ss_pred             ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHH
Q 021480          184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK  263 (312)
Q Consensus       184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~  263 (312)
                      ++|.++.+.-  .+   ++. ...+++|+.|++..+.....   +.. +      ....+|+.+.+.+-.-..     +.
T Consensus       172 ~~L~L~~N~l--~~---~~~-~~~l~~L~~L~Ls~N~l~~l---~~~-~------~~l~~L~~L~L~~N~l~~-----l~  230 (317)
T 3o53_A          172 EHLNLQYNFI--YD---VKG-QVVFAKLKTLDLSSNKLAFM---GPE-F------QSAAGVTWISLRNNKLVL-----IE  230 (317)
T ss_dssp             CEEECTTSCC--CE---EEC-CCCCTTCCEEECCSSCCCEE---CGG-G------GGGTTCSEEECTTSCCCE-----EC
T ss_pred             CEEECCCCcC--cc---ccc-ccccccCCEEECCCCcCCcc---hhh-h------cccCcccEEECcCCcccc-----hh
Confidence            9988843321  11   111 12489999999987653210   000 0      113566666665311110     01


Q ss_pred             HHHccCcccceeEEecCC
Q 021480          264 FVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       264 ~ll~~~~~Le~~~i~~~~  281 (312)
                      .-+...+.|+.+.+..+.
T Consensus       231 ~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             TTCCCCTTCCEEECTTCC
T ss_pred             hHhhcCCCCCEEEccCCC
Confidence            113556677777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.54  E-value=3e-08  Score=82.22  Aligned_cols=187  Identities=11%  Similarity=0.077  Sum_probs=116.7

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeecee-eCC--CCCCCCCcccceeeecc-eeeChHHHHHHHhCCccc
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTL   78 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~L   78 (312)
                      .++++|+++....  ..+|. .+..+++|+.|++++|. +..  +..+.++++|++|++++ +.++.- ....+.+++.|
T Consensus        31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred             CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence            3678888865543  36666 56689999999999996 654  34678999999999998 766531 12356789999


Q ss_pred             ceeeeeccCCceeEE--EeCCCcc---eEEEeec--ccce---eeecCCcce-EEEEeEEEeecCCccCCCCcchhHHHH
Q 021480           79 ERLTLMNFDGFTHLN--IDAPNLQ---FFDIGGV--FDDV---TFENTFHLA-LVSIGLYVNVKNDQAMGPGNSCKLLRF  147 (312)
Q Consensus        79 e~L~l~~~~~~~~~~--i~~p~L~---~L~~~~~--~~~~---~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~~~~~  147 (312)
                      ++|++.+|.... +.  -..++|+   .|.+.++  +..+   .+..+++|+ .++++.+....         .+  ...
T Consensus       108 ~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~---------i~--~~~  175 (239)
T 2xwt_C          108 KFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---------VQ--GYA  175 (239)
T ss_dssp             CEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE---------EC--TTT
T ss_pred             CEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc---------cC--Hhh
Confidence            999999885321 11  1234565   8888875  2222   256788999 98886442210         00  011


Q ss_pred             hhcCCCccEEEEeeee-hhhhcccCCCCCCCccc-CCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          148 FVHLPHIRRLEIQSYF-LKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~-~~~l~~~~~~~~l~~~f-~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      +.. ++++.|++..+. +..+..    ..+. .+ ++|+.|.+..+.  ..   .++.  ..+++|+.|.+..
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~----~~~~-~l~~~L~~L~l~~N~--l~---~l~~--~~~~~L~~L~l~~  235 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDK----DAFG-GVYSGPSLLDVSQTS--VT---ALPS--KGLEHLKELIARN  235 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECT----TTTT-TCSBCCSEEECTTCC--CC---CCCC--TTCTTCSEEECTT
T ss_pred             cCC-CCCCEEEcCCCCCcccCCH----HHhh-ccccCCcEEECCCCc--cc---cCCh--hHhccCceeeccC
Confidence            223 688999998773 432211    1122 35 788888874321  11   1221  2578888888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.54  E-value=2.2e-08  Score=95.86  Aligned_cols=79  Identities=25%  Similarity=0.292  Sum_probs=35.2

Q ss_pred             CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      +++.|+++.+.  ...+|. .+..+++|++|++++|.+..  +..+..+++|++|+++++.+++. ....+..+++|++|
T Consensus        74 ~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           74 MLKVLNLQHNE--LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQEL  150 (680)
T ss_dssp             TCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEE
T ss_pred             CcCEEECCCCc--cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEE
Confidence            34555553322  224444 24455555555555554433  12344555555555555544321 11122344444444


Q ss_pred             eeecc
Q 021480           82 TLMNF   86 (312)
Q Consensus        82 ~l~~~   86 (312)
                      ++.+|
T Consensus       151 ~L~~n  155 (680)
T 1ziw_A          151 LLSNN  155 (680)
T ss_dssp             ECCSS
T ss_pred             EccCC
Confidence            44443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.54  E-value=4.3e-08  Score=83.92  Aligned_cols=160  Identities=16%  Similarity=0.186  Sum_probs=112.7

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|+++.+  ....+| .+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++  ++. +..++.|+.|++.
T Consensus        47 ~L~~L~l~~~--~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~  120 (291)
T 1h6t_A           47 SIDQIIANNS--DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE  120 (291)
T ss_dssp             TCCEEECTTS--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred             cccEEEccCC--CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECC
Confidence            3556655333  223454 477889999999999988774448899999999999999865  222 7899999999999


Q ss_pred             ccCCceeEE--EeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           85 NFDGFTHLN--IDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        85 ~~~~~~~~~--i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      +|.... +.  -..++|+.|.++++ +..+ .+..+++|+.++++.+...         ...   . +..+++|+.|+++
T Consensus       121 ~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~---------~~~---~-l~~l~~L~~L~L~  186 (291)
T 1h6t_A          121 HNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DIV---P-LAGLTKLQNLYLS  186 (291)
T ss_dssp             TSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---------CCG---G-GTTCTTCCEEECC
T ss_pred             CCcCCC-ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccc---------cch---h-hcCCCccCEEECC
Confidence            885322 10  13478999999874 3332 3567899999998754321         111   2 6688999999999


Q ss_pred             eeehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480          161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      .+.+..+     +. +. .+++|+.|.+..+
T Consensus       187 ~N~i~~l-----~~-l~-~l~~L~~L~l~~n  210 (291)
T 1h6t_A          187 KNHISDL-----RA-LA-GLKNLDVLELFSQ  210 (291)
T ss_dssp             SSCCCBC-----GG-GT-TCTTCSEEEEEEE
T ss_pred             CCcCCCC-----hh-hc-cCCCCCEEECcCC
Confidence            9876533     21 22 4789999999654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.51  E-value=3.6e-07  Score=86.27  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             cceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE
Q 021480           17 QRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI   94 (312)
Q Consensus        17 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i   94 (312)
                      +...+|..+-  +++++|+|++|.+..  +..|.++++|+.|+|++|.++.- .+..+.++++|++|+|++|.- ..+..
T Consensus        42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~  117 (635)
T 4g8a_A           42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLAL  117 (635)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECG
T ss_pred             CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCH
Confidence            3345555442  356777777776543  33466677777777777665421 112356667777777766632 11211


Q ss_pred             ----eCCCcceEEEeec-c---cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480           95 ----DAPNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  164 (312)
Q Consensus        95 ----~~p~L~~L~~~~~-~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  164 (312)
                          ..++|++|.+.++ +   ....+.++++|+.++++.+.....       ..   ..+++.++++++|+++.+.+
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-------~~---~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KL---PEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------CC---CGGGGGCTTCCEEECCSSCC
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-------CC---chhhccchhhhhhcccCccc
Confidence                2356666666652 1   223355677777777654321100       00   12345666777777665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.51  E-value=6e-08  Score=91.55  Aligned_cols=159  Identities=15%  Similarity=0.017  Sum_probs=79.4

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHH-----------------HhCCcccceeeeeccCCce
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENL-----------------ISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-----------------l~~cp~Le~L~l~~~~~~~   90 (312)
                      .++|+.|++++|.+...+.  .+++|++|++++|.+++  ++..                 -..++.|+.|++++|... 
T Consensus       120 l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-  194 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-  194 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred             CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-
Confidence            3556666666665544222  23566666666665542  1100                 022344555555544321 


Q ss_pred             eEEEeCCCcceEEEeecc-cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480           91 HLNIDAPNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI  169 (312)
Q Consensus        91 ~~~i~~p~L~~L~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~  169 (312)
                      .+.-..++|+.|.+.++. ..+. ...++|+.++++.+...               .+...+++|+.|+++.+.+.    
T Consensus       195 ~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L~---------------~lp~~l~~L~~L~Ls~N~L~----  254 (622)
T 3g06_A          195 SLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLT---------------SLPVLPSELKELMVSGNRLT----  254 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCS---------------CCCCCCTTCCEEECCSSCCS----
T ss_pred             CCCCccchhhEEECcCCcccccC-CCCCCCCEEEccCCccC---------------cCCCCCCcCcEEECCCCCCC----
Confidence            111123455555555421 1111 12355666666432111               11134577788887776542    


Q ss_pred             cCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          170 GNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       170 ~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                           .+|..+++|++|.++.+.-  .   .++..+..+|+|+.|++..+..
T Consensus       255 -----~lp~~~~~L~~L~Ls~N~L--~---~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          255 -----SLPMLPSGLLSLSVYRNQL--T---RLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             -----CCCCCCTTCCEEECCSSCC--C---SCCGGGGGSCTTCEEECCSCCC
T ss_pred             -----cCCcccccCcEEeCCCCCC--C---cCCHHHhhccccCEEEecCCCC
Confidence                 1222466788888743321  1   2455577888898888887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.49  E-value=5.2e-08  Score=91.76  Aligned_cols=146  Identities=16%  Similarity=0.165  Sum_probs=92.4

Q ss_pred             ecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-EEEeCCC
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-LNIDAPN   98 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-~~i~~p~   98 (312)
                      .+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+  ++ .+..++.|+.|+|.+|..... --...++
T Consensus        57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~  132 (605)
T 1m9s_A           57 SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQ  132 (605)
T ss_dssp             CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTT
T ss_pred             CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCccccCCCc
Confidence            344 466788888888888877664447788888888888887754  22 467788888888887743210 0013467


Q ss_pred             cceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCC
Q 021480           99 LQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL  176 (312)
Q Consensus        99 L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l  176 (312)
                      |+.|.++++ +..+ .+..+++|+.|+++.+...         ..   .. +..+++|+.|+++.+.+..+     + .+
T Consensus       133 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~~---~~-l~~l~~L~~L~Ls~N~i~~l-----~-~l  193 (605)
T 1m9s_A          133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DI---VP-LAGLTKLQNLYLSKNHISDL-----R-AL  193 (605)
T ss_dssp             CSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC---------CC---GG-GTTCTTCCEEECCSSCCCBC-----G-GG
T ss_pred             cCEEECCCCccCCchhhcccCCCCEEECcCCcCC---------Cc---hh-hccCCCCCEEECcCCCCCCC-----h-HH
Confidence            888887763 2222 2456788888887644221         00   11 56778888888887765432     1 12


Q ss_pred             CcccCCcceEEEE
Q 021480          177 PRPCVDLNYLSIR  189 (312)
Q Consensus       177 ~~~f~~L~~L~l~  189 (312)
                      . .+++|+.|.+.
T Consensus       194 ~-~l~~L~~L~L~  205 (605)
T 1m9s_A          194 A-GLKNLDVLELF  205 (605)
T ss_dssp             T-TCTTCSEEECC
T ss_pred             c-cCCCCCEEEcc
Confidence            2 36778888874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.49  E-value=1.5e-07  Score=77.60  Aligned_cols=140  Identities=19%  Similarity=0.151  Sum_probs=90.4

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      +.......+|..+.  ++|+.|+|++|.+..  +..+..+++|+.|+|+++.++.- ....+..++.|+.|+++++....
T Consensus        26 c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           26 CRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             CTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCc
Confidence            33334457777654  889999999998765  45578899999999999987431 12346788999999998774321


Q ss_pred             eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480           91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG  170 (312)
Q Consensus        91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~  170 (312)
                                       +....+..+++|+.++++.+....         .+   .-+..+++|+.|+++.+.+..+.. 
T Consensus       103 -----------------l~~~~~~~l~~L~~L~Ls~N~l~~---------lp---~~~~~l~~L~~L~L~~N~l~~~~~-  152 (229)
T 3e6j_A          103 -----------------LPSAVFDRLVHLKELFMCCNKLTE---------LP---RGIERLTHLTHLALDQNQLKSIPH-  152 (229)
T ss_dssp             -----------------CCTTTTTTCTTCCEEECCSSCCCS---------CC---TTGGGCTTCSEEECCSSCCCCCCT-
T ss_pred             -----------------cChhHhCcchhhCeEeccCCcccc---------cC---cccccCCCCCEEECCCCcCCccCH-
Confidence                             111123467888888876443210         01   124578889999998876542211 


Q ss_pred             CCCCCCCcccCCcceEEEE
Q 021480          171 NVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       171 ~~~~~l~~~f~~L~~L~l~  189 (312)
                         ..+ ..+++|+.|.+.
T Consensus       153 ---~~~-~~l~~L~~L~l~  167 (229)
T 3e6j_A          153 ---GAF-DRLSSLTHAYLF  167 (229)
T ss_dssp             ---TTT-TTCTTCCEEECT
T ss_pred             ---HHH-hCCCCCCEEEee
Confidence               112 246788888874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.48  E-value=5e-08  Score=91.08  Aligned_cols=175  Identities=15%  Similarity=0.108  Sum_probs=108.5

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      +++.|+++....  ..+|..++  ++|+.|+|++|.+...+  ..+++|+.|++++|.+++  ++. +..  +|+.|++.
T Consensus        60 ~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECC
Confidence            567777754432  35787764  78999999999887644  568899999999998865  333 332  89999998


Q ss_pred             ccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021480           85 NFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  163 (312)
Q Consensus        85 ~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  163 (312)
                      +|.... +.-..++|+.|.++++ +..+.- .+++|+.++++.+...         ..+   . +.  ++|+.|+++.+.
T Consensus       129 ~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~---------~lp---~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          129 NNQLTM-LPELPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLT---------FLP---E-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             SSCCSC-CCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS---------CCC---C-CC--TTCCEEECCSSC
T ss_pred             CCcCCC-CCCcCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCC---------Ccc---h-hh--CCCCEEECcCCC
Confidence            875322 1115678888888874 222222 5678888888654321         111   1 22  678888888776


Q ss_pred             hhhhcccCCCCCCCcccCCc-------ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          164 LKYLAIGNVPSRLPRPCVDL-------NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       164 ~~~l~~~~~~~~l~~~f~~L-------~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      +..     .|. ++.   +|       +.|.++.+.  ..   .++.-+..+++|+.|++..+..
T Consensus       192 L~~-----lp~-~~~---~L~~~~~~L~~L~Ls~N~--l~---~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          192 LES-----LPA-VPV---RNHHSEETEIFFRCRENR--IT---HIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CSS-----CCC-CC-----------CCEEEECCSSC--CC---CCCGGGGGSCTTEEEECCSSSC
T ss_pred             CCc-----hhh-HHH---hhhcccccceEEecCCCc--ce---ecCHHHhcCCCCCEEEeeCCcC
Confidence            532     222 221   45       766664331  11   2444445588888888877654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.48  E-value=7.2e-08  Score=83.20  Aligned_cols=165  Identities=16%  Similarity=0.121  Sum_probs=106.2

Q ss_pred             CCceEEEEEecCCc--ceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChH-HHH--HHHhCC
Q 021480            4 SCVKEFILEIWKGQ--RYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQD-VFE--NLISSS   75 (312)
Q Consensus         4 ~~v~eL~l~~~~~~--~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~-~l~--~ll~~c   75 (312)
                      +++++|+++.....  ...++ ..+..+++|++|+|++|.+..  +..+..+++|++|+|++|.+.+. .+.  ..+..+
T Consensus       117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l  196 (310)
T 4glp_A          117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF  196 (310)
T ss_dssp             BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred             CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence            46778888654321  01111 233468899999999998765  35678999999999999987653 232  223688


Q ss_pred             cccceeeeeccCCc--eeE----EEeCCCcceEEEeec-ccce---eeec---CCcceEEEEeEEEeecCCccCCCCcch
Q 021480           76 PTLERLTLMNFDGF--THL----NIDAPNLQFFDIGGV-FDDV---TFEN---TFHLALVSIGLYVNVKNDQAMGPGNSC  142 (312)
Q Consensus        76 p~Le~L~l~~~~~~--~~~----~i~~p~L~~L~~~~~-~~~~---~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~  142 (312)
                      |+|++|++++|...  ...    --..++|+.|.++++ +...   .+..   +++|+.++++.+....         .+
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---------lp  267 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---------VP  267 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---------CC
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc---------hh
Confidence            99999999988542  111    113479999999874 2221   1333   3799999987543221         01


Q ss_pred             hHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480          143 KLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       143 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~  189 (312)
                      .  . +  .++|+.|+++.+.+..+     +.  +..+++|+.|.++
T Consensus       268 ~--~-~--~~~L~~L~Ls~N~l~~~-----~~--~~~l~~L~~L~L~  302 (310)
T 4glp_A          268 K--G-L--PAKLRVLDLSSNRLNRA-----PQ--PDELPEVDNLTLD  302 (310)
T ss_dssp             S--C-C--CSCCSCEECCSCCCCSC-----CC--TTSCCCCSCEECS
T ss_pred             h--h-h--cCCCCEEECCCCcCCCC-----ch--hhhCCCccEEECc
Confidence            0  1 1  27899999999877422     21  2357889998874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.43  E-value=2e-07  Score=72.92  Aligned_cols=95  Identities=7%  Similarity=0.121  Sum_probs=69.7

Q ss_pred             ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhC---CcccceeeeeccCCcee
Q 021480           18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISS---SPTLERLTLMNFDGFTH   91 (312)
Q Consensus        18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~l~~~~~~~~   91 (312)
                      ...+|..-...-.|+.|++++|.+.+  ...+.+|++|++|+|++|. +++..+..+-..   |+.|++|++++|..++.
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            35677654445679999999998654  3446789999999999996 899888887653   78999999999976542


Q ss_pred             EEEeCCCcceEEEeecccceeeecCCcceEEEEeEEE
Q 021480           92 LNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYV  128 (312)
Q Consensus        92 ~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~  128 (312)
                      -              ++..  +..+++|+.++++.+.
T Consensus       130 ~--------------Gl~~--L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 K--------------GIIA--LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             H--------------HHHH--GGGCTTCCEEEEESCT
T ss_pred             H--------------HHHH--HhcCCCCCEEECCCCC
Confidence            1              1221  3457888888887554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.38  E-value=1.3e-07  Score=77.41  Aligned_cols=82  Identities=23%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+++...  ...+|. .+..+++|+.|+|++|.+..  +..+.++++|+.|+|+++.++.- ....+.+++.|+.
T Consensus        32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence            356777775443  235665 56678999999999998764  56789999999999999988631 2234678999999


Q ss_pred             eeeeccCC
Q 021480           81 LTLMNFDG   88 (312)
Q Consensus        81 L~l~~~~~   88 (312)
                      |++.++..
T Consensus       109 L~L~~N~l  116 (220)
T 2v9t_B          109 LLLNANKI  116 (220)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCCC
Confidence            99998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.35  E-value=1.9e-07  Score=76.51  Aligned_cols=141  Identities=14%  Similarity=0.133  Sum_probs=81.9

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      ++......+|..+.  +.++.|+|++|.+..   ...+..+++|+.|+|+++.+++- ....+..++.|++|+++++...
T Consensus        18 ~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           18 CSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLE   94 (220)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccC
Confidence            33333346676553  456788888887654   22367888888888888876532 1224567788888888776432


Q ss_pred             eeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480           90 THLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI  169 (312)
Q Consensus        90 ~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~  169 (312)
                      .                 ...-.+..+++|+.++++.+.....        .   ...+..+++|+.|++..+.+..   
T Consensus        95 ~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~--------~---~~~~~~l~~L~~L~L~~N~l~~---  143 (220)
T 2v70_A           95 N-----------------VQHKMFKGLESLKTLMLRSNRITCV--------G---NDSFIGLSSVRLLSLYDNQITT---  143 (220)
T ss_dssp             C-----------------CCGGGGTTCSSCCEEECTTSCCCCB--------C---TTSSTTCTTCSEEECTTSCCCC---
T ss_pred             c-----------------cCHhHhcCCcCCCEEECCCCcCCeE--------C---HhHcCCCccCCEEECCCCcCCE---
Confidence            1                 1111245677788877764332100        0   1224567888888887775532   


Q ss_pred             cCCCCCCCcccCCcceEEEE
Q 021480          170 GNVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       170 ~~~~~~l~~~f~~L~~L~l~  189 (312)
                       ..+..+. .+++|+.|.+.
T Consensus       144 -~~~~~~~-~l~~L~~L~L~  161 (220)
T 2v70_A          144 -VAPGAFD-TLHSLSTLNLL  161 (220)
T ss_dssp             -BCTTTTT-TCTTCCEEECC
T ss_pred             -ECHHHhc-CCCCCCEEEec
Confidence             1222222 36677777774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.34  E-value=2.1e-07  Score=76.21  Aligned_cols=128  Identities=13%  Similarity=0.058  Sum_probs=81.9

Q ss_pred             CceEEEEEecCCcceecC-C-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            5 CVKEFILEIWKGQRYKVP-S-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp-~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++|+++....  ..++ . .+..+++|+.|+|++|.+..  +..+.++++|+.|+|+++.+++- ....+..++.|++
T Consensus        33 ~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT  109 (220)
T ss_dssp             TCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred             CCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence            456666654432  3443 2 35678999999999998765  34688999999999999988642 2345788999999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      |+++++....                 .....+..+++|+.++++.+.....        .   ...+..+++++.|++.
T Consensus       110 L~Ls~N~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~~--------~---~~~~~~l~~L~~L~L~  161 (220)
T 2v70_A          110 LMLRSNRITC-----------------VGNDSFIGLSSVRLLSLYDNQITTV--------A---PGAFDTLHSLSTLNLL  161 (220)
T ss_dssp             EECTTSCCCC-----------------BCTTSSTTCTTCSEEECTTSCCCCB--------C---TTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCe-----------------ECHhHcCCCccCCEEECCCCcCCEE--------C---HHHhcCCCCCCEEEec
Confidence            9999875321                 1111234566677776653321100        0   1224456777777776


Q ss_pred             eee
Q 021480          161 SYF  163 (312)
Q Consensus       161 ~~~  163 (312)
                      ++.
T Consensus       162 ~N~  164 (220)
T 2v70_A          162 ANP  164 (220)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.31  E-value=1.1e-07  Score=80.01  Aligned_cols=140  Identities=16%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      +++.|+++.+  ....+| .+..+++|+.|+|++|.+...+.+..+++|+.|+++++.+++  ++.+ .. +.|+.|++.
T Consensus        42 ~L~~L~l~~n--~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~  114 (263)
T 1xeu_A           42 GVQNFNGDNS--NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLD  114 (263)
T ss_dssp             TCSEEECTTS--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECC
T ss_pred             cCcEEECcCC--Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEcc
Confidence            4556665433  233566 677889999999999988774448899999999999998865  2222 23 899999999


Q ss_pred             ccCCcee-EEEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           85 NFDGFTH-LNIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        85 ~~~~~~~-~~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      +|..... ---..++|+.|.+.++ +..+ .+..+++|+.++++.+....         .    ..+..+++|+.|++.+
T Consensus       115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~---------~----~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN---------T----GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB---------C----TTSTTCCCCCEEEEEE
T ss_pred             CCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc---------h----HHhccCCCCCEEeCCC
Confidence            8853210 0013478999988874 3222 35678999999987543211         1    3366789999999998


Q ss_pred             eeh
Q 021480          162 YFL  164 (312)
Q Consensus       162 ~~~  164 (312)
                      +.+
T Consensus       182 N~~  184 (263)
T 1xeu_A          182 QKC  184 (263)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.31  E-value=8.9e-08  Score=77.02  Aligned_cols=65  Identities=28%  Similarity=0.304  Sum_probs=37.1

Q ss_pred             ecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      .+|..+..+++|+.|++++|.+...+.+..+++|+.|++++|.++.  ++..+..+|.|+.|++++|
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred             hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence            3344555566666666666666553355566666666666666542  3334444556666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.26  E-value=3.4e-07  Score=86.45  Aligned_cols=124  Identities=16%  Similarity=0.140  Sum_probs=78.7

Q ss_pred             CCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE----eCCCcceEEEeec-ccce---eeecCCcc
Q 021480           49 GFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFFDIGGV-FDDV---TFENTFHL  119 (312)
Q Consensus        49 ~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i----~~p~L~~L~~~~~-~~~~---~~~~~~~L  119 (312)
                      ++| +++.|+|+++.++.- .+..+.+++.|++|++++|.-. .+.-    ..++|++|.++++ +..+   .+.++++|
T Consensus        49 ~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            444 799999999988641 1235789999999999988532 2321    2478899988874 3222   35678899


Q ss_pred             eEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480          120 ALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       120 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~  189 (312)
                      ++++++.+....-         +  ...++++++|+.|++..+.+..+   ..+..+ ..+++|++|.+.
T Consensus       127 ~~L~Ls~N~l~~l---------~--~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~-~~l~~L~~L~L~  181 (635)
T 4g8a_A          127 QKLVAVETNLASL---------E--NFPIGHLKTLKELNVAHNLIQSF---KLPEYF-SNLTNLEHLDLS  181 (635)
T ss_dssp             CEEECTTSCCCCS---------T--TCCCTTCTTCCEEECCSSCCCCC---CCCGGG-GGCTTCCEEECC
T ss_pred             CEEECCCCcCCCC---------C--hhhhhcCcccCeeccccCccccC---CCchhh-ccchhhhhhccc
Confidence            9998865432110         0  01256788999999987765311   112111 235677777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.24  E-value=2.6e-07  Score=81.15  Aligned_cols=189  Identities=19%  Similarity=0.243  Sum_probs=105.5

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +++.......+|..+.  ++++.|+|++|.+.. + ..|.++++|++|+|++|.+.+..-...+.+++.|.++.+.++..
T Consensus        14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~   91 (350)
T 4ay9_X           14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   91 (350)
T ss_dssp             EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred             EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence            4455444467887763  689999999998865 3 35789999999999998753321123467788888766666555


Q ss_pred             ceeEE----EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcC-CCccEEEE
Q 021480           89 FTHLN----IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEI  159 (312)
Q Consensus        89 ~~~~~----i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l  159 (312)
                      +..+.    -..++|+.|.+.++ +.   ........++..+++..+.....        .+  ...+..+ ..++.|.+
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~--------l~--~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--------IE--RNSFVGLSFESVILWL  161 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE--------EC--TTSSTTSBSSCEEEEC
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc--------cc--ccchhhcchhhhhhcc
Confidence            44442    13478888888873 22   22222344555555532111100        00  0112223 45788888


Q ss_pred             eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHH-HhhhcCCCcceEEEEeccC
Q 021480          160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~-~~L~~~p~Le~L~l~~~~~  221 (312)
                      +.+.++.+..     ... ...+|++|.+..+ ....   .++ ..+..+++|+.|++..+..
T Consensus       162 ~~N~i~~i~~-----~~f-~~~~L~~l~l~~~-n~l~---~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          162 NKNGIQEIHN-----SAF-NGTQLDELNLSDN-NNLE---ELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             CSSCCCEECT-----TSS-TTEEEEEEECTTC-TTCC---CCCTTTTTTEECCSEEECTTSCC
T ss_pred             ccccccCCCh-----hhc-cccchhHHhhccC-Cccc---CCCHHHhccCcccchhhcCCCCc
Confidence            8776542211     110 1223444443111 1111   232 3467889999999877653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.23  E-value=5.7e-07  Score=72.74  Aligned_cols=80  Identities=20%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             CceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            5 CVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      ++++|+++....  ..+|.. +..+++|+.|++++|.+.. + ..+..+++|++|+++++.+++- ....+..++.|++|
T Consensus        29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            567777754433  356665 4578999999999998865 2 3368899999999999987632 22346789999999


Q ss_pred             eeeccC
Q 021480           82 TLMNFD   87 (312)
Q Consensus        82 ~l~~~~   87 (312)
                      ++.++.
T Consensus       106 ~L~~N~  111 (208)
T 2o6s_A          106 ALNTNQ  111 (208)
T ss_dssp             ECCSSC
T ss_pred             EcCCCc
Confidence            998774

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.21  E-value=6.2e-07  Score=73.81  Aligned_cols=128  Identities=18%  Similarity=0.068  Sum_probs=84.7

Q ss_pred             CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .+++.|+++....  ..+ |..+..+++|+.|+|++|.+...  ..+.++++|+.|+|++|.++.- ....+..++.|+.
T Consensus        40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence            4577777755443  244 55677899999999999988652  3468999999999999988642 2234678999999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ  160 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~  160 (312)
                      |++.++.... +    |             ..+..+++|+.++++.+....         .+  ...+..+++++.|++.
T Consensus       117 L~Ls~N~l~~-l----p-------------~~~~~l~~L~~L~L~~N~l~~---------~~--~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A          117 LFMCCNKLTE-L----P-------------RGIERLTHLTHLALDQNQLKS---------IP--HGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             EECCSSCCCS-C----C-------------TTGGGCTTCSEEECCSSCCCC---------CC--TTTTTTCTTCCEEECT
T ss_pred             EeccCCcccc-c----C-------------cccccCCCCCEEECCCCcCCc---------cC--HHHHhCCCCCCEEEee
Confidence            9998874321 1    0             113456777777776432110         00  1235567788888776


Q ss_pred             eee
Q 021480          161 SYF  163 (312)
Q Consensus       161 ~~~  163 (312)
                      ++.
T Consensus       168 ~N~  170 (229)
T 3e6j_A          168 GNP  170 (229)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.20  E-value=1.4e-07  Score=72.13  Aligned_cols=129  Identities=15%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             CCcceEEEeeceeeC--C-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480           28 CQNLIHLELFNCLLK--P-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  104 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~  104 (312)
                      .++|+.|++++|.+.  . +..+..+++|+.|++++|.+++-   ..+..++.|+.|++++|.....             
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------------   79 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------------   79 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence            378999999999887  3 55668999999999999988654   5678899999999988754220             


Q ss_pred             eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021480          105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN  184 (312)
Q Consensus       105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~  184 (312)
                         . +..+..+++|+.++++.+...         ..+ ....+..+++++.|++.++.+..+..  .+......+++|+
T Consensus        80 ---~-~~~~~~l~~L~~L~ls~N~i~---------~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~~~~l~~L~  143 (149)
T 2je0_A           80 ---L-EVLAEKCPNLTHLNLSGNKIK---------DLS-TIEPLKKLENLKSLDLFNCEVTNLND--YRENVFKLLPQLT  143 (149)
T ss_dssp             ---T-HHHHHHCTTCCEEECTTSCCC---------SHH-HHGGGGGCTTCCEEECTTCGGGGSTT--HHHHHHHHCTTCC
T ss_pred             ---H-HHHhhhCCCCCEEECCCCcCC---------ChH-HHHHHhhCCCCCEEeCcCCcccchHH--HHHHHHHHCCCcc
Confidence               1 112345788999988654311         111 11447789999999999887642211  0001112477888


Q ss_pred             eEEE
Q 021480          185 YLSI  188 (312)
Q Consensus       185 ~L~l  188 (312)
                      .|.+
T Consensus       144 ~L~l  147 (149)
T 2je0_A          144 YLDG  147 (149)
T ss_dssp             EETT
T ss_pred             cccC
Confidence            7754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.20  E-value=3.2e-07  Score=80.91  Aligned_cols=111  Identities=23%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      +.......+|..+.  +.++.|+|++|.+..  +..+. .+++|+.|+|+++.++.- ....+..++.|+.|+++++...
T Consensus        25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           25 CSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLH  101 (361)
T ss_dssp             CCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             eCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCC
Confidence            33333346776653  457889999987764  33355 889999999999887542 1234678889999999887532


Q ss_pred             eeEEE----eCCCcceEEEeec-cc---ceeeecCCcceEEEEeEE
Q 021480           90 THLNI----DAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLY  127 (312)
Q Consensus        90 ~~~~i----~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~  127 (312)
                       .+..    ..++|+.|.+.++ +.   ...+..+++|+.++++.+
T Consensus       102 -~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             -cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence             1211    2356666666653 21   122455667777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.20  E-value=2.9e-08  Score=87.98  Aligned_cols=170  Identities=15%  Similarity=0.117  Sum_probs=94.9

Q ss_pred             CcceEEEeeceeeCCC--CCC----C-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcce
Q 021480           29 QNLIHLELFNCLLKPP--STF----K-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQF  101 (312)
Q Consensus        29 ~~L~~L~L~~~~l~~~--~~~----~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~  101 (312)
                      ++|+.|+|++|.+.+.  ..+    . ..++|+.|+|++|.+++..+..+...++.|+.|++++|.....          
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~----------  141 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE----------  141 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH----------
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH----------
Confidence            4566677766665431  111    1 2356777777777666655555555556666666666532110          


Q ss_pred             EEEeecccce--ee-ecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCc
Q 021480          102 FDIGGVFDDV--TF-ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR  178 (312)
Q Consensus       102 L~~~~~~~~~--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~  178 (312)
                           +...+  .+ ...++|+.++++.+....       .....+...+...++|++|+++.+.+...........+. 
T Consensus       142 -----~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-  208 (372)
T 3un9_A          142 -----ACKDLRDLLLHDQCQITTLRLSNNPLTA-------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-  208 (372)
T ss_dssp             -----HHHHHHHHHHSTTCCCCEEECCSSCCHH-------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-
T ss_pred             -----HHHHHHHHHHhcCCccceeeCCCCCCCh-------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-
Confidence                 00111  11 235778888886543210       012233445567888999999887653211101111122 


Q ss_pred             ccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          179 PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       179 ~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      ..++|+.|.++.+.-...+...+...+..+|+|+.|++..+..
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            2457888888655434444556777788899999999977653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.19  E-value=5.4e-07  Score=72.16  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=18.1

Q ss_pred             hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480          148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~  189 (312)
                      +.++++|+.|++..+.+..++.    ..+ ..+++|++|.+.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~----~~~-~~l~~L~~L~L~  134 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPE----GAF-NDLSALSHLAIG  134 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCT----TTT-TTCTTCCEEECC
T ss_pred             hCCCCCCCEEECCCCCCCeeCh----hhh-hcCccccEEEeC
Confidence            3455666666666655432211    111 135566666663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.18  E-value=9.9e-07  Score=80.28  Aligned_cols=100  Identities=16%  Similarity=0.071  Sum_probs=55.6

Q ss_pred             cCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcc
Q 021480           21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQ  100 (312)
Q Consensus        21 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~  100 (312)
                      +| .+..+++|+.|++++|.+...+.  ..++|++|+++++.+++  ++ -+..++.|+.|++.+|.... +.-..++|+
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~  218 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLE  218 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence            44 35556666666666665544222  12466666666665543  22 25677777777777664321 222235777


Q ss_pred             eEEEeec-ccce-eeecCCcceEEEEeEE
Q 021480          101 FFDIGGV-FDDV-TFENTFHLALVSIGLY  127 (312)
Q Consensus       101 ~L~~~~~-~~~~-~~~~~~~L~~l~l~~~  127 (312)
                      .|.+.++ +..+ .+..+++|+.++++.+
T Consensus       219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          219 SIVAGNNILEELPELQNLPFLTTIYADNN  247 (454)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             EEECcCCcCCcccccCCCCCCCEEECCCC
Confidence            7777763 2221 2456777777777643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.18  E-value=5.8e-07  Score=71.85  Aligned_cols=72  Identities=19%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC-CC--CCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PS--TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ++......+|..+..  +|+.|+++++.+.. ++  .+..+++|++|+|+++.+++- .+..+.+++.|++|+++++.
T Consensus        15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence            343334567776543  78888888887765 22  267888888888888887542 23346677888888887764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.17  E-value=7.6e-07  Score=78.51  Aligned_cols=145  Identities=22%  Similarity=0.114  Sum_probs=95.3

Q ss_pred             CceEEEEEecCCcceecCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            5 CVKEFILEIWKGQRYKVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++.|+|+...  ...+|...+  .+++|+.|+|++|.+..  +..+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus        40 ~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  116 (361)
T 2xot_A           40 YTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV  116 (361)
T ss_dssp             TCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred             CCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence            45666664433  346666654  78999999999998765  34688999999999999987642 2235678999999


Q ss_pred             eeeeccCCceeEE----EeCCCcceEEEeec-ccce---ee---ecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhh
Q 021480           81 LTLMNFDGFTHLN----IDAPNLQFFDIGGV-FDDV---TF---ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFV  149 (312)
Q Consensus        81 L~l~~~~~~~~~~----i~~p~L~~L~~~~~-~~~~---~~---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~  149 (312)
                      |++.++.... +.    -..++|+.|.+.++ +..+   .+   ..+++|+.++++.+....         .+  ...+.
T Consensus       117 L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------l~--~~~~~  184 (361)
T 2xot_A          117 LLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK---------LP--LTDLQ  184 (361)
T ss_dssp             EECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC---------CC--HHHHH
T ss_pred             EECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc---------cC--HHHhh
Confidence            9999886432 11    13478999998874 2222   12   457889988887543210         01  12344


Q ss_pred             cCCC--ccEEEEeeeeh
Q 021480          150 HLPH--IRRLEIQSYFL  164 (312)
Q Consensus       150 ~l~~--l~~L~l~~~~~  164 (312)
                      .++.  ++.|.+.++.+
T Consensus       185 ~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          185 KLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HSCHHHHTTEECCSSCE
T ss_pred             hccHhhcceEEecCCCc
Confidence            5555  37788877654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.16  E-value=1.1e-06  Score=79.98  Aligned_cols=189  Identities=17%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|+++.+..  ..+| .+..+++|+.|++++|.+...+..  .++|+.|++++|.++.  ++. +..++.|++|++.
T Consensus       174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~  245 (454)
T 1jl5_A          174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYAD  245 (454)
T ss_dssp             TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred             cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECC
Confidence            566777654432  2456 577788888888888877653322  3578888888777652  332 5677788888887


Q ss_pred             ccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecC-Ccc--CCC--CcchhHHHHhhcC-CCccEE
Q 021480           85 NFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKN-DQA--MGP--GNSCKLLRFFVHL-PHIRRL  157 (312)
Q Consensus        85 ~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~-~~~--~~~--~~~~~~~~~l~~l-~~l~~L  157 (312)
                      +|.... +.-..++|+.|.+.++ +..+. ...++|+.++++.+....- ..+  ...  .....+.. +..+ ++++.|
T Consensus       246 ~N~l~~-l~~~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L  322 (454)
T 1jl5_A          246 NNLLKT-LPDLPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEEL  322 (454)
T ss_dssp             SSCCSS-CCSCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEE
T ss_pred             CCcCCc-ccccccccCEEECCCCcccccC-cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEE
Confidence            764221 1112356666666653 22211 1235566665543221100 000  000  00000000 1122 367777


Q ss_pred             EEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480          158 EIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE  221 (312)
Q Consensus       158 ~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~  221 (312)
                      +++.+.+.         .+|..+++|+.|.++.+.-  .   .++.   .+++|+.|++..+..
T Consensus       323 ~Ls~N~l~---------~lp~~~~~L~~L~L~~N~l--~---~lp~---~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          323 NVSNNKLI---------ELPALPPRLERLIASFNHL--A---EVPE---LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             ECCSSCCS---------CCCCCCTTCCEEECCSSCC--S---CCCC---CCTTCCEEECCSSCC
T ss_pred             ECCCCccc---------cccccCCcCCEEECCCCcc--c---cccc---hhhhccEEECCCCCC
Confidence            77665432         1333467888888743321  1   1333   468888888876643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.13  E-value=4.2e-07  Score=71.55  Aligned_cols=60  Identities=10%  Similarity=0.014  Sum_probs=42.6

Q ss_pred             cccCCcceEEEeeceeeCCCCCCCCCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           25 LFLCQNLIHLELFNCLLKPPSTFKGFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ...+.+|+.|++++|.+...+.+..+. +|+.|++++|.+++-   ..+..++.|+.|++++|.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence            456778888888888776655555544 888888888877642   345677888888887764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.08  E-value=1.9e-06  Score=67.73  Aligned_cols=65  Identities=22%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             eecCCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ..+|..+.  ++|+.|+++++.+.. + ..+..+++|++|+++++.++.- ....+..++.|+.|++.++
T Consensus        20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred             ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence            34554433  466666666665543 2 2345666666666666655421 1122345555666555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=1.4e-06  Score=81.52  Aligned_cols=105  Identities=18%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeeccc
Q 021480           30 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD  109 (312)
Q Consensus        30 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~  109 (312)
                      .|+.|+|++|.+...+.+..+++|+.|+|++|.++  .++..++.++.|+.|++++|....                 ++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-----------------lp  502 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-----------------VD  502 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-----------------CG
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-----------------Cc
Confidence            47788888887766445778888888888888776  345567778888888887764321                 11


Q ss_pred             ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021480          110 DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK  165 (312)
Q Consensus       110 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~  165 (312)
                        .+..+++|+.++++.+.....       ..+   ..++.+++|+.|+++++.+.
T Consensus       503 --~l~~l~~L~~L~Ls~N~l~~~-------~~p---~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          503 --GVANLPRLQELLLCNNRLQQS-------AAI---QPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             --GGTTCSSCCEEECCSSCCCSS-------STT---GGGGGCTTCCEEECTTSGGG
T ss_pred             --ccCCCCCCcEEECCCCCCCCC-------CCc---HHHhcCCCCCEEEecCCcCC
Confidence              244567777777764322100       001   23556778888888777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.06  E-value=1.7e-06  Score=69.14  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF   89 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~   89 (312)
                      +++.......+|..+.  ++|+.|+++++.+.. |..+..+++|+.|+|+++.++.- ....+.+++.|++|+++++...
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccC
Confidence            3444444456776653  578888988887765 45677888899999988887542 1234677888888888877432


Q ss_pred             eeEEE----eCCCcceEEEeec-ccc---eeeecCCcceEEEEeE
Q 021480           90 THLNI----DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGL  126 (312)
Q Consensus        90 ~~~~i----~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~  126 (312)
                      . +..    ..++|+.|.+.++ +..   -.+..+++|+.++++.
T Consensus        92 ~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           92 C-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             B-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             E-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            1 110    2256666666653 111   1234566666666653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.04  E-value=4.1e-07  Score=71.63  Aligned_cols=133  Identities=20%  Similarity=0.163  Sum_probs=88.8

Q ss_pred             CCceEEEEEecCCcceecCCCcccCC-cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQ-NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      .++++|+++....  ..+|. +..+. +|+.|++++|.+.....+..+++|+.|++++|.+++- ...++..+|.|+.|+
T Consensus        19 ~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence            4567777654432  24554 45554 9999999999887666788999999999999988642 123457899999999


Q ss_pred             eeccCCceeEEEeCCCcceEEEeecccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           83 LMNFDGFTHLNIDAPNLQFFDIGGVFDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        83 l~~~~~~~~~~i~~p~L~~L~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      +++|....                 +..+ .+..+++|+.++++.+.....        .......+..+++++.|++..
T Consensus        95 L~~N~i~~-----------------~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           95 LTNNSLVE-----------------LGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CCSCCCCC-----------------GGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEE
T ss_pred             CCCCcCCc-----------------chhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCc
Confidence            99875311                 1111 245678888888865432110        001123467889999999887


Q ss_pred             eehh
Q 021480          162 YFLK  165 (312)
Q Consensus       162 ~~~~  165 (312)
                      +..+
T Consensus       150 n~~~  153 (176)
T 1a9n_A          150 VKLK  153 (176)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            7653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.02  E-value=3.7e-06  Score=65.71  Aligned_cols=86  Identities=9%  Similarity=0.073  Sum_probs=63.2

Q ss_pred             CCCceEEEEEecCCcceecCCCcccCCcceEEEeecee-eCC--CCCCCC----Ccccceeeeccee-eChHHHHHHHhC
Q 021480            3 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKP--PSTFKG----FRNLKSLDLQHIT-LSQDVFENLISS   74 (312)
Q Consensus         3 ~~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~--~~~~~~----l~~L~~L~L~~~~-~~~~~l~~ll~~   74 (312)
                      ...+++|+++.+......+ ..+..|++|++|+|++|. +.+  ...++.    +++|+.|+|++|. +++..+..+ +.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HH  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GG
T ss_pred             CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hc
Confidence            3457889987554321222 224579999999999995 654  222334    3589999999996 999988875 68


Q ss_pred             CcccceeeeeccCCce
Q 021480           75 SPTLERLTLMNFDGFT   90 (312)
Q Consensus        75 cp~Le~L~l~~~~~~~   90 (312)
                      ||+|+.|++++|..+.
T Consensus       138 ~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             CTTCCEEEEESCTTCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            9999999999998764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.92  E-value=5.6e-06  Score=72.56  Aligned_cols=199  Identities=16%  Similarity=0.097  Sum_probs=104.7

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC---CCCCCCCccccee-eecceeeChHHHHHHHhCCccc
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSL-DLQHITLSQDVFENLISSSPTL   78 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L-~L~~~~~~~~~l~~ll~~cp~L   78 (312)
                      +++++|+|+....  ..+|.. +..+++|+.|+|++|.+..   +..|.++++|+.+ .+.++.++.- .+..+..++.|
T Consensus        30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred             CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence            4688888866543  488875 5678999999999997532   3456788887764 4445555321 12356789999


Q ss_pred             ceeeeeccCCcee---EEEeCCCcceEEEeec--ccce---eeecC-CcceEEEEeEEEeecCCc-cCC--------CCc
Q 021480           79 ERLTLMNFDGFTH---LNIDAPNLQFFDIGGV--FDDV---TFENT-FHLALVSIGLYVNVKNDQ-AMG--------PGN  140 (312)
Q Consensus        79 e~L~l~~~~~~~~---~~i~~p~L~~L~~~~~--~~~~---~~~~~-~~L~~l~l~~~~~~~~~~-~~~--------~~~  140 (312)
                      +.|++.++.....   ......++..+.+.+.  ...+   .+..+ ..++.++++.+....-.. .+.        ...
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence            9999998742210   0112234444544431  1111   11111 234444443221100000 000        000


Q ss_pred             ---chhH-HHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEE
Q 021480          141 ---SCKL-LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM  216 (312)
Q Consensus       141 ---~~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l  216 (312)
                         ...+ ...+.++++|+.|+++.+.+..+     |.   ..|.+|++|.+.... ...   .++. +...++|+.+.+
T Consensus       187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-----p~---~~~~~L~~L~~l~~~-~l~---~lP~-l~~l~~L~~l~l  253 (350)
T 4ay9_X          187 NNNLEELPNDVFHGASGPVILDISRTRIHSL-----PS---YGLENLKKLRARSTY-NLK---KLPT-LEKLVALMEASL  253 (350)
T ss_dssp             CTTCCCCCTTTTTTEECCSEEECTTSCCCCC-----CS---SSCTTCCEEECTTCT-TCC---CCCC-TTTCCSCCEEEC
T ss_pred             CCcccCCCHHHhccCcccchhhcCCCCcCcc-----Ch---hhhccchHhhhccCC-CcC---cCCC-chhCcChhhCcC
Confidence               0000 12355778888998887765322     21   237778877762221 111   2333 467788888877


Q ss_pred             Ee
Q 021480          217 LA  218 (312)
Q Consensus       217 ~~  218 (312)
                      ..
T Consensus       254 ~~  255 (350)
T 4ay9_X          254 TY  255 (350)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.88  E-value=5.2e-06  Score=66.26  Aligned_cols=103  Identities=18%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CceEEEEEecCCcceecCCC--cccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            5 CVKEFILEIWKGQRYKVPSS--LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++|+++...  ...+|..  +..+++|+.|+|++|.+..  +..+.++++|+.|+|+++.+++- ....+...+.|+.
T Consensus        30 ~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred             CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCE
Confidence            56777765443  2356653  6788999999999998865  45688999999999999988642 1234567899999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~  127 (312)
                      |+++++....                 .....+..+++|+.++++.+
T Consensus       107 L~L~~N~l~~-----------------~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          107 LNLYDNQISC-----------------VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCE-----------------ECTTSSTTCTTCCEEECTTC
T ss_pred             EECCCCcCCe-----------------eCHHHhhcCCCCCEEEeCCC
Confidence            9998875422                 11112446778888877644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.83  E-value=1e-05  Score=63.24  Aligned_cols=95  Identities=18%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      ++......+|..+.  ++|+.|+|++|.+..  +..+.++++|+.|+|++|.+++- ....+..++.|+.|+++++....
T Consensus        16 ~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~   92 (170)
T 3g39_A           16 CSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKS   92 (170)
T ss_dssp             CTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCE
Confidence            34444457787664  789999999998865  44578999999999999987632 22345788999999998774321


Q ss_pred             eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480           91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~  127 (312)
                                       +..-.+..+++|+.++++.+
T Consensus        93 -----------------~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           93 -----------------IPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             -----------------CCTTTTTTCTTCCEEECCSS
T ss_pred             -----------------eCHHHhcCCCCCCEEEeCCC
Confidence                             11112446777888877644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.80  E-value=1.2e-05  Score=63.03  Aligned_cols=95  Identities=18%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT   90 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~   90 (312)
                      +.......+|..+.  ++|+.|+|++|.+..  +..+.++++|+.|+|+++.+++- ....+..++.|+.|+++++....
T Consensus        19 ~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~   95 (174)
T 2r9u_A           19 CQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKS   95 (174)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             eCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccce
Confidence            34333457777664  789999999998765  34578899999999999987641 12245678889998888764321


Q ss_pred             eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480           91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~  127 (312)
                                       +....+..+++|+.++++.+
T Consensus        96 -----------------l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           96 -----------------IPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             -----------------CCTTTTTTCTTCSEEECCSS
T ss_pred             -----------------eCHHHhccccCCCEEEeCCC
Confidence                             11112445677777777643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.78  E-value=1.3e-05  Score=74.83  Aligned_cols=159  Identities=12%  Similarity=0.044  Sum_probs=100.4

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      .+++.|+++.+..  ..+|   ..+++|+.|+|++|.+...+.+..  +|+.|+|++|.+++  ++.   .++.|+.|++
T Consensus        80 ~~L~~L~Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNAL--ISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCC--cccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence            3577777754433  3677   346899999999998876444443  99999999999865  333   6899999999


Q ss_pred             eccCCceeEEEeCCCcceEEEeec-cccee-eecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           84 MNFDGFTHLNIDAPNLQFFDIGGV-FDDVT-FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        84 ~~~~~~~~~~i~~p~L~~L~~~~~-~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      ++|.... +.-..++|+.|.++++ +..+. +.  ++|+.++++.+...  ..+    ...  ..+....+.++.|++++
T Consensus       148 s~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~--~lp----~~~--~~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          148 DNNQLTM-LPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE--SLP----AVP--VRNHHSEETEIFFRCRE  216 (571)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS--SCC----CCC----------CCEEEECCS
T ss_pred             CCCccCc-CCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC--chh----hHH--HhhhcccccceEEecCC
Confidence            9885322 2225579999999884 22221 32  88999998754322  111    000  01122234459999998


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      +.+..     .|..+. .+++|+.|.++.+
T Consensus       217 N~l~~-----lp~~l~-~l~~L~~L~L~~N  240 (571)
T 3cvr_A          217 NRITH-----IPENIL-SLDPTCTIILEDN  240 (571)
T ss_dssp             SCCCC-----CCGGGG-GSCTTEEEECCSS
T ss_pred             Cccee-----cCHHHh-cCCCCCEEEeeCC
Confidence            86642     333333 3778888888544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.73  E-value=1.5e-05  Score=70.15  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=70.7

Q ss_pred             cCCcceEEEeecee-eCCCCCCCCCcccceeeecceeeChHHHHHHH-hCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480           27 LCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLI-SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI  104 (312)
Q Consensus        27 ~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll-~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~  104 (312)
                      .+++|+.|.|++|. +..++ + .+++|++|.|..+.++.+.+..+. ..+|+|+.|+|..+.....   ..+.++    
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~---~~~~~~----  240 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---FDGDMN----  240 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT---CCSCGG----
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc---cchhHH----
Confidence            34555555555542 22111 2 255566666655555554444433 2455666655532110000   000000    


Q ss_pred             eecccc-eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh--hcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480          105 GGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  181 (312)
Q Consensus       105 ~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~  181 (312)
                        .+.. +....+|+|+.+.+..+...         + .....+.  +.+++|++|+++.+.+.-......+..++ .++
T Consensus       241 --~l~~~l~~~~~p~Lr~L~L~~~~i~---------~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~  307 (362)
T 2ra8_A          241 --VFRPLFSKDRFPNLKWLGIVDAEEQ---------N-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-KIK  307 (362)
T ss_dssp             --GTGGGSCTTTCTTCCEEEEESCTTH---------H-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHT
T ss_pred             --HHHHHHhcCCCCCcCEEeCCCCCCc---------h-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-cCC
Confidence              0011 11124789999988643211         1 0011122  35789999999877553210111122222 478


Q ss_pred             CcceEEEEEEcCChhhHHHHH
Q 021480          182 DLNYLSIRINFNDLEENLAAL  202 (312)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~l~  202 (312)
                      +|+.|.++.+.-+...+..+.
T Consensus       308 ~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          308 HLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TCSEEECCSBBCCHHHHHHHH
T ss_pred             cceEEECCCCcCCHHHHHHHH
Confidence            999999965544433333333

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.72  E-value=1.8e-05  Score=61.42  Aligned_cols=82  Identities=21%  Similarity=0.068  Sum_probs=61.5

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      .++++|+++.+...  .+ ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+++-.....+..+|.|+.|
T Consensus        49 ~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           49 VNLEFLSLINVGLI--SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GGCCEEEEESSCCC--CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             CCCCEEeCcCCCCC--Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            45778887655432  33 667789999999999998876 444 34599999999999998653222457889999999


Q ss_pred             eeeccCC
Q 021480           82 TLMNFDG   88 (312)
Q Consensus        82 ~l~~~~~   88 (312)
                      ++.+|..
T Consensus       126 ~l~~N~l  132 (168)
T 2ell_A          126 DLFNCEV  132 (168)
T ss_dssp             ECCSSGG
T ss_pred             EeeCCcC
Confidence            9988753

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.72  E-value=1.8e-05  Score=62.03  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+++....  ..+|.. +..+++|+.|++++|.+.. + ..+..+++|+.|+++++.+++- ....+..++.|+.
T Consensus        28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence            3567777654432  356665 4578999999999998875 2 3368999999999999988642 2234678899999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~  127 (312)
                      |++.++....                 +....+..+++|+.++++.+
T Consensus       105 L~l~~N~l~~-----------------~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          105 LALDTNQLKS-----------------VPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSCCSC-----------------CCTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCcceE-----------------eCHHHhcCCcccCEEEecCC
Confidence            9998774321                 11112345677888877644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.68  E-value=8e-06  Score=65.41  Aligned_cols=98  Identities=19%  Similarity=0.042  Sum_probs=72.8

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCC-CCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      .++++|+++.+..  ..+| .+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+++  ++ -+..++.|+.|+
T Consensus        48 ~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence            3677888765443  3467 7788999999999999887633 34567999999999999875  44 467899999999


Q ss_pred             eeccCCce--e--EEEeCCCcceEEEeec
Q 021480           83 LMNFDGFT--H--LNIDAPNLQFFDIGGV  107 (312)
Q Consensus        83 l~~~~~~~--~--~~i~~p~L~~L~~~~~  107 (312)
                      +.+|....  .  .--..++|+.|.+.++
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            99875321  1  0114578999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.68  E-value=1.6e-05  Score=74.37  Aligned_cols=97  Identities=21%  Similarity=0.231  Sum_probs=73.2

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l   83 (312)
                      .++.|+++.+  ....+|. +..+++|+.|+|++|.+.. |..++++++|+.|+|++|.+++  ++ .++.++.|+.|++
T Consensus       442 ~L~~L~Ls~n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTS--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCC--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            3556666433  3346776 8889999999999998875 5678899999999999999875  44 6789999999999


Q ss_pred             eccCCcee----EEEeCCCcceEEEeec
Q 021480           84 MNFDGFTH----LNIDAPNLQFFDIGGV  107 (312)
Q Consensus        84 ~~~~~~~~----~~i~~p~L~~L~~~~~  107 (312)
                      ++|.....    .--..++|+.|.++++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            98853221    0113578898988874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.66  E-value=5.6e-06  Score=79.73  Aligned_cols=102  Identities=19%  Similarity=0.120  Sum_probs=61.3

Q ss_pred             CCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE---EeCC
Q 021480           22 PSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAP   97 (312)
Q Consensus        22 p~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~---i~~p   97 (312)
                      |..+..++.|+.|+|++|.+.. +..+..+++|+.|+|++|.++  .++..+..++.|+.|+|++|... .+.   -..+
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            4455667888888888887654 445567888888888888776  34455677888888888877532 111   0224


Q ss_pred             CcceEEEeec-ccce--eeecCCcceEEEEeE
Q 021480           98 NLQFFDIGGV-FDDV--TFENTFHLALVSIGL  126 (312)
Q Consensus        98 ~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~  126 (312)
                      +|+.|.+.++ +..+  .+..+++|+.++++.
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            5666666553 2111  244566666666653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.63  E-value=3.5e-05  Score=60.06  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=60.6

Q ss_pred             CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++.|+++...  ...+ |..+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus        30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            456777765443  2355 4456789999999999998876 3 3468999999999999988642 1234678899999


Q ss_pred             eeeeccC
Q 021480           81 LTLMNFD   87 (312)
Q Consensus        81 L~l~~~~   87 (312)
                      |++.++.
T Consensus       107 L~L~~N~  113 (170)
T 3g39_A          107 IWLLNNP  113 (170)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            9998774

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.59  E-value=4.4e-05  Score=59.81  Aligned_cols=81  Identities=21%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC-CC-CCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+++....  ..+ |..+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus        33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~  109 (174)
T 2r9u_A           33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH  109 (174)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred             CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence            4567777754432  355 4456789999999999998876 33 368899999999999988631 1234678999999


Q ss_pred             eeeeccC
Q 021480           81 LTLMNFD   87 (312)
Q Consensus        81 L~l~~~~   87 (312)
                      |++.++.
T Consensus       110 L~L~~N~  116 (174)
T 2r9u_A          110 IYLYNNP  116 (174)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            9998774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.58  E-value=1.3e-06  Score=77.28  Aligned_cols=139  Identities=16%  Similarity=0.069  Sum_probs=79.9

Q ss_pred             CCceEEEEEecCCc---ceecCCCcc-cCCcceEEEeeceeeCC--CCCC-CCCcccceeeecceeeChHHHH---HHH-
Q 021480            4 SCVKEFILEIWKGQ---RYKVPSSLF-LCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE---NLI-   72 (312)
Q Consensus         4 ~~v~eL~l~~~~~~---~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~-~~l~~L~~L~L~~~~~~~~~l~---~ll-   72 (312)
                      +++++|+++.+...   ...+...+. .+++|+.|+|++|.+.+  ...+ ..+++|+.|+|++|.+++....   ..+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            35677776533211   112333232 34799999999998864  2222 3578999999999999875443   334 


Q ss_pred             hCCcccceeeeeccCCceeEEEeCCCcceEEEeecccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhc
Q 021480           73 SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH  150 (312)
Q Consensus        73 ~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~  150 (312)
                      ..++.|++|++.+|.....               +...+  .+...++|+.++++.+...+       .....+...+..
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~---------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~-------~g~~~L~~~L~~  209 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAA---------------GVAVLMEGLAGNTSVTHLSLLHTGLGD-------EGLELLAAQLDR  209 (372)
T ss_dssp             STTCCCCEEECCSSCCHHH---------------HHHHHHHHHHTCSSCCEEECTTSSCHH-------HHHHHHHHHGGG
T ss_pred             hcCCccceeeCCCCCCChH---------------HHHHHHHHHhcCCCcCEEeCCCCCCCc-------HHHHHHHHHHhc
Confidence            4688999999998853210               01111  12345666776665332110       011123344555


Q ss_pred             CCCccEEEEeeeeh
Q 021480          151 LPHIRRLEIQSYFL  164 (312)
Q Consensus       151 l~~l~~L~l~~~~~  164 (312)
                      .++|+.|+++.+.+
T Consensus       210 ~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          210 NRQLQELNVAYNGA  223 (372)
T ss_dssp             CSCCCEEECCSSCC
T ss_pred             CCCcCeEECCCCCC
Confidence            66777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.34  E-value=6.6e-05  Score=65.05  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=46.1

Q ss_pred             CCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc-eEEEEEEcCC
Q 021480          116 TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN-YLSIRINFND  194 (312)
Q Consensus       116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~-~L~l~~~~~~  194 (312)
                      +++|+.+++..+.-..       ..    ...+.++++|+.+++..+ ++.+..     .....+.+|+ .+.+....  
T Consensus       225 ~~~L~~l~L~~n~i~~-------I~----~~aF~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~~l--  285 (329)
T 3sb4_A          225 MPNLVSLDISKTNATT-------IP----DFTFAQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPASV--  285 (329)
T ss_dssp             CTTCCEEECTTBCCCE-------EC----TTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECTTC--
T ss_pred             cCCCeEEECCCCCcce-------ec----HhhhhCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcccc--
Confidence            7788888875321100       00    123567899999999765 332211     1112355666 66663211  


Q ss_pred             hhhHHHH-HHhhhcCCCcceEEEEecc
Q 021480          195 LEENLAA-LCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       195 ~~~~~~l-~~~L~~~p~Le~L~l~~~~  220 (312)
                       .   .+ ...+.+|++|+.+.+....
T Consensus       286 -~---~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          286 -T---AIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             -C---EECTTTTTTCTTEEEEEECSSC
T ss_pred             -e---EEchhhhhCCccCCEEEeCCCc
Confidence             1   12 2356899999999986543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.29  E-value=3.6e-05  Score=74.16  Aligned_cols=98  Identities=24%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      ..++.|+|+..  ....+|..++.+++|+.|+|++|.+.. |..+..+++|+.|+|++|.++  .++..+..++.|++|+
T Consensus       224 ~~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNL--QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTS--CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCC--CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence            34556665333  334777777888888888888887764 455777888888888888776  3455567788888888


Q ss_pred             eeccCCceeEE---EeCCCcceEEEee
Q 021480           83 LMNFDGFTHLN---IDAPNLQFFDIGG  106 (312)
Q Consensus        83 l~~~~~~~~~~---i~~p~L~~L~~~~  106 (312)
                      |.+|... .+.   -..++|+.|.+.+
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            8877421 111   1235677777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.00029  Score=60.90  Aligned_cols=164  Identities=21%  Similarity=0.209  Sum_probs=93.2

Q ss_pred             CCcceEEEeeceeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeec-----------------cCC
Q 021480           28 CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN-----------------FDG   88 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~-----------------~~~   88 (312)
                      |++|+.|.|.. .+.  +...|.+|++|+.+.+..+.+..- -...+..|..+..+....                 |..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            79999999988 443  245688999999999988753210 012334565555554432                 111


Q ss_pred             ce--------------------------eEEE--------------eCCCcceEEEeec-cc---ceeeecCCcceEEEE
Q 021480           89 FT--------------------------HLNI--------------DAPNLQFFDIGGV-FD---DVTFENTFHLALVSI  124 (312)
Q Consensus        89 ~~--------------------------~~~i--------------~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l  124 (312)
                      +.                          .+.+              .+++|+++.+.++ +.   ...+.++++|+++++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            11                          0111              2678999998873 33   334678999999988


Q ss_pred             eEEEeecCCccCCCCcchhHHHHhhcCCCcc-EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-H
Q 021480          125 GLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-L  202 (312)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~  202 (312)
                      ...  ...      ..    ...+.++++|+ .+.+.. .+..+..    .. ...+.+|+.|.+..+  ...   .+ .
T Consensus       258 ~~n--i~~------I~----~~aF~~~~~L~~~l~l~~-~l~~I~~----~a-F~~c~~L~~l~l~~n--~i~---~I~~  314 (329)
T 3sb4_A          258 PHN--LKT------IG----QRVFSNCGRLAGTLELPA-SVTAIEF----GA-FMGCDNLRYVLATGD--KIT---TLGD  314 (329)
T ss_dssp             CTT--CCE------EC----TTTTTTCTTCCEEEEECT-TCCEECT----TT-TTTCTTEEEEEECSS--CCC---EECT
T ss_pred             Ccc--cce------eh----HHHhhCChhccEEEEEcc-cceEEch----hh-hhCCccCCEEEeCCC--ccC---ccch
Confidence            532  100      01    12356788999 999975 3322211    11 123566777766211  111   12 2


Q ss_pred             HhhhcCCCcceEEE
Q 021480          203 CLLRSSPNLQELEM  216 (312)
Q Consensus       203 ~~L~~~p~Le~L~l  216 (312)
                      ..+.+|++|+.+..
T Consensus       315 ~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          315 ELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTCTTCCCCEEEC
T ss_pred             hhhcCCcchhhhcc
Confidence            35688999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.21  E-value=5.3e-05  Score=59.98  Aligned_cols=61  Identities=15%  Similarity=0.131  Sum_probs=38.0

Q ss_pred             cCCcceEEEeece-eeCC------CCCCCCCcccceeeecceeeChHH---HHHHHhCCcccceeeeeccC
Q 021480           27 LCQNLIHLELFNC-LLKP------PSTFKGFRNLKSLDLQHITLSQDV---FENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        27 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~~~   87 (312)
                      .+++|++|+|++| .+.+      ...+...++|++|+|++|.+.++.   +...+..++.|++|+|.+|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            4577777777777 6543      112344567777777777776542   44455566777777776664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.21  E-value=0.00013  Score=63.62  Aligned_cols=74  Identities=20%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             EecCC-cceecCCCcccCCcceEEEeec-eeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           12 EIWKG-QRYKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        12 ~~~~~-~~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ++... ....+|. +..+++|+.|+|++ |.+..  +..+.++++|+.|+|++|.+++- .+..+..++.|+.|+|+++.
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc
Confidence            44444 4467898 88899999999996 87765  34588999999999999988652 23457889999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.80  E-value=0.00017  Score=57.06  Aligned_cols=39  Identities=13%  Similarity=0.049  Sum_probs=23.0

Q ss_pred             CCcceEEE--EEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          181 VDLNYLSI--RINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       181 ~~L~~L~l--~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      .+|++|.+  ..+.-...+...+...++.++.|+.|++..+
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            35666666  3232233444556677777788888877554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.68  E-value=0.00055  Score=57.29  Aligned_cols=60  Identities=25%  Similarity=0.200  Sum_probs=36.1

Q ss_pred             cCCcceEEEeeceeeCCCCC----CCCCcccceeeecceeeChH-HHHHHHhCCcccceeeeeccCC
Q 021480           27 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~----~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      .+++|+.|+|++|.+.....    +..+++|+.|+|++|.+.+- .+..+ ... .|++|++.++.-
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSL  232 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTT
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcC
Confidence            35677777777776655222    23677777777777776542 22222 223 677777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.58  E-value=0.0012  Score=58.71  Aligned_cols=34  Identities=18%  Similarity=0.100  Sum_probs=18.6

Q ss_pred             CcceEEEeece-eeCCCCCCCCCcccceeeeccee
Q 021480           29 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT   62 (312)
Q Consensus        29 ~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~   62 (312)
                      .+|+.+.+... .--....|.+|++|+.+.+..+.
T Consensus       157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~  191 (401)
T 4fdw_A          157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK  191 (401)
T ss_dssp             CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC
T ss_pred             CCceEEEeCCCccEehHHHhhCcccCCeeecCCCc
Confidence            35666666542 11123456667777777776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.57  E-value=0.00088  Score=58.22  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=57.9

Q ss_pred             CCceEEEEEe-cCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021480            4 SCVKEFILEI-WKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE   79 (312)
Q Consensus         4 ~~v~eL~l~~-~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le   79 (312)
                      .++++|+|+. ..  ...+|+ .+..+++|+.|+|++|.+..  +..|.++++|+.|+|++|.++.- ....+...+ |+
T Consensus        31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ  106 (347)
T ss_dssp             SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred             CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence            3577888753 33  246664 57789999999999998865  44578999999999999998641 112333444 99


Q ss_pred             eeeeeccC
Q 021480           80 RLTLMNFD   87 (312)
Q Consensus        80 ~L~l~~~~   87 (312)
                      .|++.++.
T Consensus       107 ~l~l~~N~  114 (347)
T 2ifg_A          107 ELVLSGNP  114 (347)
T ss_dssp             EEECCSSC
T ss_pred             EEEeeCCC
Confidence            99998764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.87  E-value=0.0071  Score=53.79  Aligned_cols=92  Identities=11%  Similarity=0.055  Sum_probs=49.7

Q ss_pred             CcceEEEeece-eeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccCCc--eeEEEeCCCcceEE
Q 021480           29 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGF--THLNIDAPNLQFFD  103 (312)
Q Consensus        29 ~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~~i~~p~L~~L~  103 (312)
                      .+|+.+.+... .--....|.++ +|+.+.+...  .+...    .+.+|++|+.+++..+...  ..-.+...+|+.+.
T Consensus       135 ~~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~  209 (401)
T 4fdw_A          135 SQIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL  209 (401)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTC-CCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred             CCccEEEeCCCccEECHHhcCCC-CceEEEeCCCccEehHH----HhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence            36888887765 11123445553 6888887652  13222    4678899999888754211  00001134566665


Q ss_pred             Eeeccc---ceeeecCCcceEEEEe
Q 021480          104 IGGVFD---DVTFENTFHLALVSIG  125 (312)
Q Consensus       104 ~~~~~~---~~~~~~~~~L~~l~l~  125 (312)
                      +...+.   ...+.++++|+.+.+.
T Consensus       210 lp~~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          210 LPVTLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCTTCCEECTTTTTTCTTCCCEECC
T ss_pred             eCCchheehhhHhhCCCCCCEEecC
Confidence            554322   2234566677776663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.26  E-value=0.0059  Score=51.00  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=41.5

Q ss_pred             CCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCCce--eEE-EeCCCcceEEEeec
Q 021480           48 KGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDGFT--HLN-IDAPNLQFFDIGGV  107 (312)
Q Consensus        48 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~--~~~-i~~p~L~~L~~~~~  107 (312)
                      ..+++|++|+|++|.+++ ..++.++..+|+|+.|+|+++....  .+. +...+|+.|.+.|+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~N  230 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  230 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCC
Confidence            468999999999999865 2355677889999999998874221  110 01126777777764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.14  E-value=0.3  Score=35.70  Aligned_cols=42  Identities=17%  Similarity=0.241  Sum_probs=30.2

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceee
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITL   63 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~   63 (312)
                      .+|..+.  ++|+.|+|++|.+..  +..|..+++|++|+|.+|.+
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            6665542  468888888887765  23467788888888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.61  E-value=0.9  Score=39.80  Aligned_cols=40  Identities=15%  Similarity=0.109  Sum_probs=23.0

Q ss_pred             eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021480          112 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF  163 (312)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~  163 (312)
                      .+.++.+|+.+.+-..  .      .....    .-+.++++|+.+++....
T Consensus       329 aF~~C~~L~~i~ip~s--v------~~I~~----~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS--V------TKIPE----SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT--C------CBCCG----GGGTTCTTCCEEEESSCH
T ss_pred             HhhCCCCCCEEEECcc--c------CEEhH----hHhhCCCCCCEEEECCce
Confidence            4567788888877311  0      00011    225577888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=85.83  E-value=1.1  Score=39.20  Aligned_cols=93  Identities=15%  Similarity=0.256  Sum_probs=54.7

Q ss_pred             ccCCcceEEEeeceeeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccCCceeEEE----eCCCc
Q 021480           26 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNL   99 (312)
Q Consensus        26 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i----~~p~L   99 (312)
                      ..|..++.+......+.. ..+.++.+|+.+.+...  .+...    .+.+|+.|+.+++...  +..+.-    .+.+|
T Consensus       273 ~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             TTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTTTTTTCTTC
T ss_pred             ccccccceeccCceeecc-ccccccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEhHHhccCCCCC
Confidence            356777777666554443 34667788888877442  13222    4677888888887532  211111    23566


Q ss_pred             ceEEEeeccc---ceeeecCCcceEEEEe
Q 021480          100 QFFDIGGVFD---DVTFENTFHLALVSIG  125 (312)
Q Consensus       100 ~~L~~~~~~~---~~~~~~~~~L~~l~l~  125 (312)
                      +++.+...+.   ...+.++++|+++++.
T Consensus       346 ~~i~lp~~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          346 SNINFPLSLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred             CEEEECccccEehHHHhhCCCCCCEEEEC
Confidence            6666554332   2346788999998874

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.53  E-value=0.39  Score=37.89  Aligned_cols=61  Identities=16%  Similarity=0.189  Sum_probs=43.4

Q ss_pred             cCCcceEEEeece-eeCCC------CCCCCCcccceeeecceeeChH---HHHHHHhCCcccceeeeeccC
Q 021480           27 LCQNLIHLELFNC-LLKPP------STFKGFRNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        27 ~~~~L~~L~L~~~-~l~~~------~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      .-++|+.|+|+++ .+.+.      ..+..-..|+.|+|++|.+.+.   .+...+..-+.|++|+|.++.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3478889998875 55431      1234456789999999888754   466667777889999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.24
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.74
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.36
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.36
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.34
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.19
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.02
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.56
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.36
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.88
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.49

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9e-14  Score=117.08  Aligned_cols=126  Identities=17%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             cCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-----EEEeCCC
Q 021480           27 LCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-----LNIDAPN   98 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-----~~i~~p~   98 (312)
                      ...+|++|++++|.+..   ..-+.++++|++|++.++.+++..+.. +..||+|+.|++++|..+..     +.-..|+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34456666666665543   111345666666666666655443333 35566666666666544321     1113456


Q ss_pred             cceEEEeec--ccc--e--ee-ecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           99 LQFFDIGGV--FDD--V--TF-ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        99 L~~L~~~~~--~~~--~--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      |++|.+++.  +.+  +  .+ ..+++|+.+.++.+...        .....+..+...+|+|++|+++.
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN--------LQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG--------SCHHHHHHHHHHCTTCSEEECTT
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccc--------ccccccccccccccccccccccc
Confidence            666666552  110  1  11 12455666665432110        01223344455566666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-10  Score=97.69  Aligned_cols=161  Identities=14%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             cceEEEeeceeeCCC-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeecc
Q 021480           30 NLIHLELFNCLLKPP-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVF  108 (312)
Q Consensus        30 ~L~~L~L~~~~l~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~  108 (312)
                      ....+++.......+ .......+|++|+++++.++++.+..++..||+|++|.+.+|...+.               ..
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~---------------~~   88 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP---------------IV   88 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---------------HH
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH---------------HH
Confidence            345666666555442 23345678999999999999999999999999999999998853210               00


Q ss_pred             cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEE
Q 021480          109 DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSI  188 (312)
Q Consensus       109 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l  188 (312)
                      .  .+..+++|++++++.+...         ....+..+..++++|++|+++++..  +........+....++|++|.+
T Consensus        89 ~--~l~~~~~L~~L~Ls~c~~i---------td~~l~~l~~~~~~L~~L~ls~c~~--~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2          89 N--TLAKNSNLVRLNLSGCSGF---------SEFALQTLLSSCSRLDELNLSWCFD--FTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             H--HHTTCTTCSEEECTTCBSC---------CHHHHHHHHHHCTTCCEEECCCCTT--CCHHHHHHHHHHSCTTCCEEEC
T ss_pred             H--HHhcCCCCcCccccccccc---------cccccchhhHHHHhccccccccccc--cccccchhhhcccccccchhhh
Confidence            0  1234556666665433221         1222334455566666666654310  0000000001112345666666


Q ss_pred             EEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          189 RINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       189 ~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      ..+.....+ .++..+.+.||+|+.|++..+
T Consensus       156 ~~~~~~i~~-~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         156 SGYRKNLQK-SDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             CSCGGGSCH-HHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccc-ccccccccccccccccccccc
Confidence            432211111 235556666777777776543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6e-10  Score=92.23  Aligned_cols=74  Identities=22%  Similarity=0.273  Sum_probs=52.8

Q ss_pred             EEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480            9 FILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus         9 L~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      +++++...+...+|..+.  ++++.|+|++|.+..  +..+.++++|++|+|+++.++.  ++ .++.+|.|+.|+++++
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSS
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccc
Confidence            345565554557787664  578999999997764  3457889999999999988753  22 1357788888888876


Q ss_pred             C
Q 021480           87 D   87 (312)
Q Consensus        87 ~   87 (312)
                      .
T Consensus        88 ~   88 (266)
T d1p9ag_          88 Q   88 (266)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.66  E-value=1.1e-08  Score=86.04  Aligned_cols=74  Identities=26%  Similarity=0.233  Sum_probs=51.9

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      +++.......+|..+.  +++++|+|++|.+.. + ..+.++++|++|++.++.+..- .+..+..++.|+.|++.++.
T Consensus        15 ~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          15 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             EECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc
Confidence            3444444457777764  578889999887765 3 3577888899998888876431 12346788888888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=4.8e-09  Score=82.72  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=94.9

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEEe
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDIG  105 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~~  105 (312)
                      +++++.|++.++.+....++..|++|++|+++++.+++-  .. +.++|+|+.|.+.+|....  .+ -..++|+.+.+.
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l-~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPL-ANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccc-cccccccccccc
Confidence            467777777777776655666777777787777776542  11 5677777777777664321  11 133567777766


Q ss_pred             ecc-cce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480          106 GVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  183 (312)
Q Consensus       106 ~~~-~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L  183 (312)
                      +.. ... .+..+++|+.++++.+...         .    ...+..+++++.|.+..+.+..+     + .+. .+++|
T Consensus       115 ~~~~~~~~~~~~l~~L~~L~l~~n~l~---------~----~~~l~~~~~L~~L~l~~n~l~~l-----~-~l~-~l~~L  174 (199)
T d2omxa2         115 NNQITDIDPLKNLTNLNRLELSSNTIS---------D----ISALSGLTSLQQLNFSSNQVTDL-----K-PLA-NLTTL  174 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCC---------C----CGGGTTCTTCSEEECCSSCCCCC-----G-GGT-TCTTC
T ss_pred             ccccccccccchhhhhHHhhhhhhhhc---------c----cccccccccccccccccccccCC-----c-ccc-CCCCC
Confidence            532 111 2456888888888643211         0    12255778899998887654311     1 122 47788


Q ss_pred             ceEEEEEEcCChhhHHHHHHhhhcCCCcceE
Q 021480          184 NYLSIRINFNDLEENLAALCLLRSSPNLQEL  214 (312)
Q Consensus       184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L  214 (312)
                      ++|.++.+  ...+   +. .+..+++|+.|
T Consensus       175 ~~L~ls~N--~i~~---i~-~l~~L~~L~~L  199 (199)
T d2omxa2         175 ERLDISSN--KVSD---IS-VLAKLTNLESL  199 (199)
T ss_dssp             CEEECCSS--CCCC---CG-GGGGCTTCSEE
T ss_pred             CEEECCCC--CCCC---Cc-cccCCCCCCcC
Confidence            88887543  2222   22 35778888876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.65  E-value=6.2e-09  Score=83.78  Aligned_cols=164  Identities=16%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc--eeEEEeCCCcceEEE
Q 021480           27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF--THLNIDAPNLQFFDI  104 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~~i~~p~L~~L~~  104 (312)
                      .+.+|+.|.+.+|.+...+++..+++|++|+++++.+++-  . -+..++.|+.|.+.++...  ..+ -..++|+.+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~-~l~~l~~l~~l~~~~n~~~~i~~l-~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--A-PLKNLTKITELELSGNPLKNVSAI-AGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--G-GGTTCCSCCEEECCSCCCSCCGGG-TTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--c-cccccccccccccccccccccccc-ccccccccccc
Confidence            3566777777777665555566677777777777666432  1 1566777777777655321  101 02355666655


Q ss_pred             eecc-cce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCC
Q 021480          105 GGVF-DDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVD  182 (312)
Q Consensus       105 ~~~~-~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~  182 (312)
                      .+.. ... .+...+.+..+.++.+...         ..    ..+...++++.|.+..+.+..     . ..+ ..+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~----~~~~~~~~L~~L~l~~n~~~~-----~-~~l-~~l~~  174 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQIT---------NI----SPLAGLTNLQYLSIGNAQVSD-----L-TPL-ANLSK  174 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCC---------CC----GGGGGCTTCCEEECCSSCCCC-----C-GGG-TTCTT
T ss_pred             ccccccccchhccccchhhhhchhhhhc---------hh----hhhcccccccccccccccccc-----c-hhh-ccccc
Confidence            5421 111 1234555556554322111         00    113456677777776553321     0 111 13566


Q ss_pred             cceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          183 LNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       183 L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      |++|.++.+  ...+   +.. +..+|+|+.|.+..+.
T Consensus       175 L~~L~Ls~n--~l~~---l~~-l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         175 LTTLKADDN--KISD---ISP-LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             CCEEECCSS--CCCC---CGG-GGGCTTCCEEECTTSC
T ss_pred             ceecccCCC--ccCC---Chh-hcCCCCCCEEECcCCc
Confidence            777776432  1111   222 4667777777776553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.4e-09  Score=89.91  Aligned_cols=165  Identities=18%  Similarity=0.063  Sum_probs=102.3

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      +++++|+|+...  ...+|.. +..+++|+.|+|++|.+...+.++.+++|++|+|+++.++.  ....+...|.|+.|+
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCc--CCCcCHHHhhccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            467777775443  3467654 56789999999999988765556789999999999998864  234567889999999


Q ss_pred             eeccCCcee---EEEeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCcc
Q 021480           83 LMNFDGFTH---LNIDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR  155 (312)
Q Consensus        83 l~~~~~~~~---~~i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~  155 (312)
                      +.++.....   .....++++.|.+.+. +.   ...+..+++++.++++.+.....         +  ...+..+++|+
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~---------~--~~~~~~l~~L~  175 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL---------P--AGLLNGLENLD  175 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC---------C--TTTTTTCTTCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc---------C--ccccccccccc
Confidence            988753220   0012245666666552 11   11234566777776654321100         0  12345677777


Q ss_pred             EEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480          156 RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR  189 (312)
Q Consensus       156 ~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~  189 (312)
                      +|+++.+.+..+     |..+. .+.+|+.|.++
T Consensus       176 ~L~Ls~N~L~~l-----p~~~~-~~~~L~~L~L~  203 (266)
T d1p9ag_         176 TLLLQENSLYTI-----PKGFF-GSHLLPFAFLH  203 (266)
T ss_dssp             EEECCSSCCCCC-----CTTTT-TTCCCSEEECC
T ss_pred             eeecccCCCccc-----ChhHC-CCCCCCEEEec
Confidence            887777665432     22222 25567777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=1.5e-08  Score=80.58  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--EeCCCcceEEEe
Q 021480           28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIG  105 (312)
Q Consensus        28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--i~~p~L~~L~~~  105 (312)
                      +++|+.|++++|.+....++..+++|++|+++++.+++  +. -++.+++|+.|++.+|.-. .+.  ...++|+.+.+.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccccccccccccccccc
Confidence            45666677777666555556667777777777766653  11 1356667777777665321 110  123566666665


Q ss_pred             ec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480          106 GV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL  183 (312)
Q Consensus       106 ~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L  183 (312)
                      +. ...+ .+..+++++.++++.+...         .    ......+++++.+.+..+.+..     .+ .+ ..+++|
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~---------~----~~~~~~l~~L~~l~l~~n~l~~-----i~-~l-~~l~~L  180 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKIT---------D----ITVLSRLTKLDTLSLEDNQISD-----IV-PL-AGLTKL  180 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCC---------C----CGGGGGCTTCSEEECCSSCCCC-----CG-GG-TTCTTC
T ss_pred             ccccccccccccccccccccccccccc---------c----cccccccccccccccccccccc-----cc-cc-cCCCCC
Confidence            52 1111 2456777887776543211         0    0224567888998888765421     11 12 246788


Q ss_pred             ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      ++|.++.+.  ..+   +. -+..+++|+.|+|..
T Consensus       181 ~~L~Ls~N~--i~~---l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNH--ISD---LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSC--CCB---CG-GGTTCTTCSEEEEEE
T ss_pred             CEEECCCCC--CCC---Ch-hhcCCCCCCEEEccC
Confidence            888875432  222   33 357889999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=1.3e-08  Score=80.86  Aligned_cols=142  Identities=16%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             cccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-EEEeCCCcceEE
Q 021480           25 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-LNIDAPNLQFFD  103 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-~~i~~p~L~~L~  103 (312)
                      +..+++|+.|++++|.+...+.+..+++|+.|+++++.+++  ++ -+..+|.|+.|++.++....- --...+.++.+.
T Consensus        64 l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-cccccccccccccccccccccccccccccccccc
Confidence            45566677777777666554445566677777776666643  22 245666777777666542110 001224555555


Q ss_pred             Eeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480          104 IGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  181 (312)
Q Consensus       104 ~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~  181 (312)
                      +.+. .... .+..+++|+.++++.+...         .   + .-+.++++|+.|+++.+.+..+     + .+. .++
T Consensus       141 ~~~n~l~~~~~~~~l~~L~~l~l~~n~l~---------~---i-~~l~~l~~L~~L~Ls~N~i~~l-----~-~l~-~l~  200 (210)
T d1h6ta2         141 LGNNKITDITVLSRLTKLDTLSLEDNQIS---------D---I-VPLAGLTKLQNLYLSKNHISDL-----R-ALA-GLK  200 (210)
T ss_dssp             CCSSCCCCCGGGGGCTTCSEEECCSSCCC---------C---C-GGGTTCTTCCEEECCSSCCCBC-----G-GGT-TCT
T ss_pred             ccccccccccccccccccccccccccccc---------c---c-ccccCCCCCCEEECCCCCCCCC-----h-hhc-CCC
Confidence            5542 1111 1334566666665432211         0   0 1144566677777666544211     1 121 255


Q ss_pred             CcceEEEE
Q 021480          182 DLNYLSIR  189 (312)
Q Consensus       182 ~L~~L~l~  189 (312)
                      +|++|.++
T Consensus       201 ~L~~L~Ls  208 (210)
T d1h6ta2         201 NLDVLELF  208 (210)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEcc
Confidence            66666663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=9.6e-09  Score=80.95  Aligned_cols=35  Identities=9%  Similarity=0.231  Sum_probs=15.9

Q ss_pred             CCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           49 GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        49 ~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      .+++++.|++.++.++.  +. -+..+++|++|++++|
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~-~l~~l~nL~~L~Ls~N   72 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNN   72 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSS
T ss_pred             HhcCCCEEECCCCCCCC--cc-ccccCCCcCcCccccc
Confidence            34455555555554432  11 1344555555555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.52  E-value=8.6e-09  Score=87.05  Aligned_cols=101  Identities=24%  Similarity=0.202  Sum_probs=70.6

Q ss_pred             CceEEEEEecC-CcceecCCCcccCCcceEEEeece-eeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            5 CVKEFILEIWK-GQRYKVPSSLFLCQNLIHLELFNC-LLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         5 ~v~eL~l~~~~-~~~~~lp~~l~~~~~L~~L~L~~~-~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      +|.+|++.... .+...+|..+.++++|+.|+|++| .+.  .|+.++++++|++|+|+++.+.+. ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            57888886443 234689999999999999999874 564  366789999999999999987542 2234677889999


Q ss_pred             eeeeccCCceeEE---EeCCCcceEEEee
Q 021480           81 LTLMNFDGFTHLN---IDAPNLQFFDIGG  106 (312)
Q Consensus        81 L~l~~~~~~~~~~---i~~p~L~~L~~~~  106 (312)
                      +++.++.....+.   -..+.++.+.+.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~  158 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDG  158 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccCchhhccCcccceeeccc
Confidence            9998764321110   0234566666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.51  E-value=3.8e-09  Score=90.53  Aligned_cols=251  Identities=12%  Similarity=0.060  Sum_probs=147.5

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC------CCCCCCCcccceeeecceeeC------h---HHHHHHHhCCcccceeeee
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLS------Q---DVFENLISSSPTLERLTLM   84 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~------~---~~l~~ll~~cp~Le~L~l~   84 (312)
                      .+...+..+++|+.|+|++|.+.+      ...+...++|+.|++.++...      .   ..+...+..|+.|++|++.
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            444445567888888888887643      123556788888888776432      1   1344556788888888888


Q ss_pred             ccCCce-------eEEEeCCCcceEEEeec-ccc-----e-----------eeecCCcceEEEEeEEEeecCCccCCCCc
Q 021480           85 NFDGFT-------HLNIDAPNLQFFDIGGV-FDD-----V-----------TFENTFHLALVSIGLYVNVKNDQAMGPGN  140 (312)
Q Consensus        85 ~~~~~~-------~~~i~~p~L~~L~~~~~-~~~-----~-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  140 (312)
                      +|....       ..-...++|+.|.+.++ +..     +           .....+.|+.+.++.+..       ....
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i-------~~~~  174 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-------ENGS  174 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-------TGGG
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc-------cccc
Confidence            774211       01113578888887752 100     0           012456777777653211       1112


Q ss_pred             chhHHHHhhcCCCccEEEEeeeehhhhcccC-CCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          141 SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGN-VPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       141 ~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~-~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      ...+...+...++++.|.+..+.+..-.... ....+ ...++|++|.++.+.-...+...+...+..+|+|+.|.+..+
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l-~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhh-cchhhhcccccccccccccccccccccccccccchhhhhhcC
Confidence            3345566778899999999877543110000 11122 247889999885443333445567888999999999999766


Q ss_pred             cCCCCCcccccccccccccccccCceEEEEEeEe-cchhHHHHHHHHHccCcccceeEEecCC
Q 021480          220 PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGIS-GIRSELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       220 ~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~-~~~~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      .....+.   .........+....|+.+.+.+-. +......+++.+-.+.+.|+++.+..+.
T Consensus       254 ~i~~~g~---~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         254 LLSARGA---AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CCCHHHH---HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ccCchhh---HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            4221000   000000011223678899888532 3344456666666688999999998765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9e-09  Score=85.72  Aligned_cols=190  Identities=15%  Similarity=0.087  Sum_probs=111.4

Q ss_pred             EEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeec
Q 021480            8 EFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN   85 (312)
Q Consensus         8 eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~   85 (312)
                      ++++.+....-..+|..+.  ++++.|+|++|.+..  +..+.++++|+.|+++++.+..- ....+..++.++.+....
T Consensus        13 ~~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i-~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          13 KVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             SCEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc-cccccccccccccccccc
Confidence            3445554433456776654  567899999997754  34578899999999988876532 122456677788777665


Q ss_pred             cCCceeEEE----eCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEE
Q 021480           86 FDGFTHLNI----DAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRL  157 (312)
Q Consensus        86 ~~~~~~~~i----~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L  157 (312)
                      ......+..    ..++|+.|.+.+. ..   ...+...++|+.+++..+....-         +  ...+..+++++.|
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i---------~--~~~f~~~~~L~~L  158 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---------P--DDTFRDLGNLTHL  158 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccccc---------C--hhHhccccchhhc
Confidence            544332221    2367777777663 21   12244567788887764321100         0  1235567788888


Q ss_pred             EEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          158 EIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       158 ~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ++..+.++.+..    ..+ ..+++|+.+.+..+..  .++  .+..+..+++|+.|++..+.
T Consensus       159 ~l~~N~l~~l~~----~~f-~~l~~L~~l~l~~N~l--~~i--~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         159 FLHGNRISSVPE----RAF-RGLHSLDRLLLHQNRV--AHV--HPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECCSSCCCEECT----TTT-TTCTTCCEEECCSSCC--CEE--CTTTTTTCTTCCEEECCSSC
T ss_pred             ccccCcccccch----hhh-ccccccchhhhhhccc--ccc--ChhHhhhhhhcccccccccc
Confidence            888776543322    111 2356677766633211  111  24456788888888887654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.7e-08  Score=84.01  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=27.9

Q ss_pred             ecCCC-cccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeecc
Q 021480           20 KVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        20 ~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      .+|+. +..+++|++|+++++.+..  +..+..++.++.+...... +..- -...+.++++|++|++.++
T Consensus        46 ~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTS
T ss_pred             CCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCCEEecCCc
Confidence            44432 3345555555555554432  2223344455554433221 1110 0122445555555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.4e-08  Score=75.93  Aligned_cols=60  Identities=10%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             ccCCcceEEEeeceeeCCCCCC-CCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           26 FLCQNLIHLELFNCLLKPPSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        26 ~~~~~L~~L~L~~~~l~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      .++.+|+.|+|++|.+...+.+ ..+++|+.|+|++|.++.  +. -++.+|.|++|++++|..
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccc
Confidence            4566778888888877654443 567778888888877643  21 256777788888777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.45  E-value=1.6e-08  Score=85.36  Aligned_cols=194  Identities=16%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL   81 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L   81 (312)
                      ..+++|+|+.+....-.+|.++..+++|++|+|++|.+..  +..+..++.|+.+++..+.+... ++..+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            4678888864332212799999999999999999997754  44577899999999999876432 34557899999999


Q ss_pred             eeeccCCceeEEE---eCCC-cceEEEeec-ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480           82 TLMNFDGFTHLNI---DAPN-LQFFDIGGV-FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH  153 (312)
Q Consensus        82 ~l~~~~~~~~~~i---~~p~-L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  153 (312)
                      ++.++.....+.-   ..++ ++.+.+.++ +...   .+..+ ....+++..+....           .+...+..+++
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~-----------~~~~~~~~~~~  222 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG-----------DASVLFGSDKN  222 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEE-----------CCGGGCCTTSC
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-----------ccccccccccc
Confidence            9998754332211   1122 244443331 1111   11122 22233332211110           01133456778


Q ss_pred             ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      ++.+.+..+.+.    +..+ .+. .+++|+.|.++.+.-..    .++..+.++|+|+.|++..+.
T Consensus       223 l~~l~~~~~~l~----~~~~-~~~-~~~~L~~L~Ls~N~l~g----~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         223 TQKIHLAKNSLA----FDLG-KVG-LSKNLNGLDLRNNRIYG----TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CSEEECCSSEEC----CBGG-GCC-CCTTCCEEECCSSCCEE----CCCGGGGGCTTCCEEECCSSE
T ss_pred             cccccccccccc----cccc-ccc-cccccccccCccCeecc----cCChHHhCCCCCCEEECcCCc
Confidence            888888766542    1111 122 36678888874332111    256667888999999887654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=3.6e-08  Score=79.16  Aligned_cols=182  Identities=15%  Similarity=0.157  Sum_probs=116.6

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM   84 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~   84 (312)
                      ++++|++.  +...-.++ .+..+++|+.|++++|.+.....+..+++|+.+.++++.++.  +. -+..++.|+.|.+.
T Consensus        42 ~L~~L~l~--~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          42 GITTLSAF--GTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             TCCEEECT--TSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECT
T ss_pred             CcCEEECC--CCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-cccccccccccccc
Confidence            34555543  33333553 577899999999999988775568899999999999987753  22 35789999999998


Q ss_pred             ccCCceeEE-EeCCCcceEEEeec-ccc-eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480           85 NFDGFTHLN-IDAPNLQFFDIGGV-FDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS  161 (312)
Q Consensus        85 ~~~~~~~~~-i~~p~L~~L~~~~~-~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~  161 (312)
                      ++....... ...+.+..+.+.+. ... ..+..+++|+.+.+..+...         ..    .-+.++++|+.|++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~---------~~----~~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS---------DL----TPLANLSKLTTLKADD  182 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------CC----GGGTTCTTCCEEECCS
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccc---------cc----hhhcccccceecccCC
Confidence            775332111 12356666665552 211 23557888998887643211         11    1256789999999987


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      +.+..+     + .+ ..+++|++|.++.+  ...+   ++ -++.+++|+.|+|..
T Consensus       183 n~l~~l-----~-~l-~~l~~L~~L~Ls~N--~lt~---i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         183 NKISDI-----S-PL-ASLPNLIEVHLKNN--QISD---VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCCC-----G-GG-GGCTTCCEEECTTS--CCCB---CG-GGTTCTTCCEEEEEE
T ss_pred             CccCCC-----h-hh-cCCCCCCEEECcCC--cCCC---Cc-ccccCCCCCEEEeeC
Confidence            754311     1 12 24788998888433  2222   33 368899999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=5.8e-08  Score=70.18  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=58.6

Q ss_pred             ecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc--eeE--EE
Q 021480           20 KVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF--THL--NI   94 (312)
Q Consensus        20 ~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~--~i   94 (312)
                      .+| .+..+++|++|++++|.+.. |+.+..+++|++|+++++.+++  ++. +..+|.|+.|++.++...  ..+  --
T Consensus        12 ~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          12 VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhc
Confidence            444 46778888888888888766 4457788888888888888754  222 678888888888876421  111  12


Q ss_pred             eCCCcceEEEeec
Q 021480           95 DAPNLQFFDIGGV  107 (312)
Q Consensus        95 ~~p~L~~L~~~~~  107 (312)
                      ..|+|+.+.+.|+
T Consensus        88 ~~~~L~~L~l~~N  100 (124)
T d1dcea3          88 SCPRLVLLNLQGN  100 (124)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCC
Confidence            3477888887763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=5.4e-08  Score=70.36  Aligned_cols=102  Identities=20%  Similarity=0.111  Sum_probs=72.2

Q ss_pred             eEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeecccce
Q 021480           32 IHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV  111 (312)
Q Consensus        32 ~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~  111 (312)
                      |.|+|+++.+...+.+.++++|+.|+++++.++.  ++..++.+++|+.|+++++.-..                 +.  
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~-----------------l~--   59 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALEN-----------------VD--   59 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCC-----------------CG--
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccc-----------------cC--
Confidence            5799999999887778999999999999999864  44457889999999998874321                 11  


Q ss_pred             eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480          112 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  164 (312)
Q Consensus       112 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  164 (312)
                      .+..+++|+.++++.+...         ..+.+ ..+..+++++.|++.++.+
T Consensus        60 ~~~~l~~L~~L~l~~N~i~---------~~~~~-~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          60 GVANLPRLQELLLCNNRLQ---------QSAAI-QPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             GGTTCSSCCEEECCSSCCC---------SSSTT-GGGGGCTTCCEEECTTSGG
T ss_pred             ccccccccCeEECCCCccC---------CCCCc-hhhcCCCCCCEEECCCCcC
Confidence            1356788888887643321         11111 2355678888888877654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.36  E-value=1.8e-08  Score=79.21  Aligned_cols=115  Identities=21%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             eecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCC
Q 021480           19 YKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPN   98 (312)
Q Consensus        19 ~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~   98 (312)
                      ..+|.++..+++|++|+|++|.+...+.+.++++|+.|+|++|.++.  ++.+...++.|+.|++.+|.-..        
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~--------  107 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--------  107 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCC--------
T ss_pred             hhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccccccccc--------
Confidence            45666777889999999999988876678889999999999998854  33344556788888887663210        


Q ss_pred             cceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480           99 LQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL  164 (312)
Q Consensus        99 L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~  164 (312)
                               +.  .+..+++|+.++++.+...         .... ...+..+++|+.|.+.++.+
T Consensus       108 ---------l~--~~~~l~~L~~L~L~~N~i~---------~~~~-~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         108 ---------LS--GIEKLVNLRVLYMSNNKIT---------NWGE-IDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ---------HH--HHHHHHHSSEEEESEEECC---------CHHH-HHHHTTTTTCSEEEECSSHH
T ss_pred             ---------cc--cccccccccccccccchhc---------cccc-cccccCCCccceeecCCCcc
Confidence                     11  1345778888888765421         1111 13467788888888887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.34  E-value=7.8e-08  Score=82.98  Aligned_cols=169  Identities=16%  Similarity=0.092  Sum_probs=94.5

Q ss_pred             CCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE-EeCCCcce
Q 021480           23 SSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-IDAPNLQF  101 (312)
Q Consensus        23 ~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-i~~p~L~~  101 (312)
                      .....++++..+.++++.+........+++|++|+++++.+++-  . .+..++.|+.|++.+|....... -..++|+.
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~  267 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTKLTE  267 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccccCCE
Confidence            34455677777777777666544455667777777777766531  1 34567777777777664211000 12356777


Q ss_pred             EEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcc
Q 021480          102 FDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRP  179 (312)
Q Consensus       102 L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~  179 (312)
                      |.+.+. +..+ .+..++.++.+.+..+...         .   + .-+..+++++.|+++.+.+..+     + .+ ..
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~---------~---~-~~~~~~~~l~~L~ls~n~l~~l-----~-~l-~~  327 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLE---------D---I-SPISNLKNLTYLTLYFNNISDI-----S-PV-SS  327 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCS---------C---C-GGGGGCTTCSEEECCSSCCSCC-----G-GG-GG
T ss_pred             eeccCcccCCCCccccccccccccccccccc---------c---c-cccchhcccCeEECCCCCCCCC-----c-cc-cc
Confidence            776652 2221 2345566666655422110         0   0 1245677888888877654311     1 12 24


Q ss_pred             cCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480          180 CVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP  220 (312)
Q Consensus       180 f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~  220 (312)
                      +++|++|.++.+.  ..+   +. .+..+|+|+.|++..+.
T Consensus       328 l~~L~~L~L~~n~--l~~---l~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         328 LTKLQRLFFANNK--VSD---VS-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CTTCCEEECCSSC--CCC---CG-GGGGCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCC--CCC---Ch-hHcCCCCCCEEECCCCc
Confidence            7788888874331  121   22 35678888888887654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.19  E-value=4.8e-07  Score=75.62  Aligned_cols=190  Identities=15%  Similarity=0.095  Sum_probs=114.9

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      ++++.|+|+...  ...+|+ ++..+++|+.|++++|.+..  +..+.+++.|++|++.++.++.  ++.  ..++.|+.
T Consensus        31 ~~l~~L~Ls~N~--i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~~--~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCE
T ss_pred             CCCCEEECcCCc--CCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Ccc--chhhhhhh
Confidence            467888775543  358887 46688999999999997755  4458899999999999987653  111  23456666


Q ss_pred             eeeeccCCc-------------eeEEE----------------eCCCcceEEEeec-ccceeeecCCcceEEEEeEEEee
Q 021480           81 LTLMNFDGF-------------THLNI----------------DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNV  130 (312)
Q Consensus        81 L~l~~~~~~-------------~~~~i----------------~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~  130 (312)
                      |.+.++...             ..+..                ..++|+.+.+.+. +..+.....++|+.++++.+...
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCC
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCC
Confidence            666543210             01111                2246666666653 33333334678888887543211


Q ss_pred             cCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCC
Q 021480          131 KNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPN  210 (312)
Q Consensus       131 ~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~  210 (312)
                      ..           ....+..++.++.|.++.+.+..+.    +..+ ..+++|+.|.++.+.  ..   .++.-+..+|+
T Consensus       185 ~~-----------~~~~~~~~~~l~~L~~s~n~l~~~~----~~~~-~~l~~L~~L~L~~N~--L~---~lp~~l~~l~~  243 (305)
T d1xkua_         185 KV-----------DAASLKGLNNLAKLGLSFNSISAVD----NGSL-ANTPHLRELHLNNNK--LV---KVPGGLADHKY  243 (305)
T ss_dssp             EE-----------CTGGGTTCTTCCEEECCSSCCCEEC----TTTG-GGSTTCCEEECCSSC--CS---SCCTTTTTCSS
T ss_pred             CC-----------ChhHhhccccccccccccccccccc----cccc-cccccceeeeccccc--cc---ccccccccccC
Confidence            10           0123556788888888776553221    1112 246788888875331  11   24445677899


Q ss_pred             cceEEEEecc
Q 021480          211 LQELEMLARP  220 (312)
Q Consensus       211 Le~L~l~~~~  220 (312)
                      |+.|+++.+.
T Consensus       244 L~~L~Ls~N~  253 (305)
T d1xkua_         244 IQVVYLHNNN  253 (305)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            9999887754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=4.1e-07  Score=78.27  Aligned_cols=165  Identities=19%  Similarity=0.180  Sum_probs=111.7

Q ss_pred             cccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE-EeCCCcceEE
Q 021480           25 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-IDAPNLQFFD  103 (312)
Q Consensus        25 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-i~~p~L~~L~  103 (312)
                      ...+++|+.|++++|.+..++.+..+++|+.|++.++.+++-  . -++.+|.|++|++.++....... ...+.++.+.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--A-PLSGLTKLTELKLGANQISNISPLAGLTALTNLE  291 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC--C-cccccccCCEeeccCcccCCCCcccccccccccc
Confidence            345789999999999988877788999999999999988652  1 26889999999998765321000 1234566666


Q ss_pred             Eeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480          104 IGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV  181 (312)
Q Consensus       104 ~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~  181 (312)
                      ..+. +..+ .+..+++++.++++.+...         ..    ..+..+++|+.|+++++.+..+     + .+. .++
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~---------~l----~~l~~l~~L~~L~L~~n~l~~l-----~-~l~-~l~  351 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNIS---------DI----SPVSSLTKLQRLFFANNKVSDV-----S-SLA-NLT  351 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCS---------CC----GGGGGCTTCCEEECCSSCCCCC-----G-GGG-GCT
T ss_pred             ccccccccccccchhcccCeEECCCCCCC---------CC----cccccCCCCCEEECCCCCCCCC-----h-hHc-CCC
Confidence            5552 2222 2557888999888654211         11    1256789999999998865422     1 222 478


Q ss_pred             CcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480          182 DLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       182 ~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      +|++|.++.+.  ..+   +.. +.++|+|+.|+|..
T Consensus       352 ~L~~L~l~~N~--l~~---l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         352 NINWLSAGHNQ--ISD---LTP-LANLTRITQLGLND  382 (384)
T ss_dssp             TCCEEECCSSC--CCB---CGG-GTTCTTCSEEECCC
T ss_pred             CCCEEECCCCc--CCC---Chh-hccCCCCCEeeCCC
Confidence            89999985432  222   333 68899999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.15  E-value=3.5e-07  Score=71.23  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD   87 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~   87 (312)
                      ++++..+...+|..+.  +++++|+|++|.+..   ...|.++++|+.|+|+++.+... ....+...+.|++|+++++.
T Consensus        13 v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             EEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc
Confidence            4444444557777664  678888888887742   34467788888888888876432 22345667778888877664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4e-08  Score=86.60  Aligned_cols=65  Identities=23%  Similarity=0.240  Sum_probs=42.9

Q ss_pred             CCCcccCCcceEEEeeceeeCC------CCCC-CCCcccceeeecceeeChHH---HHHHHhCCcccceeeeecc
Q 021480           22 PSSLFLCQNLIHLELFNCLLKP------PSTF-KGFRNLKSLDLQHITLSQDV---FENLISSSPTLERLTLMNF   86 (312)
Q Consensus        22 p~~l~~~~~L~~L~L~~~~l~~------~~~~-~~l~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~~   86 (312)
                      +..+..+++|+.|+|++|.+.+      ...+ ....+|++|+|++|.++++.   +...+..++.|++|++.+|
T Consensus        48 ~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          48 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            3334567778888888776642      0111 12346888888888887643   4455678888998888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=9.6e-07  Score=66.70  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=19.3

Q ss_pred             CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480           47 FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        47 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~   86 (312)
                      +.++..|+.|+|+++.++.  ++.+...++.|+.|+++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N   51 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN   51 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCC
Confidence            3444555556665555532  2233445555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.5e-06  Score=66.45  Aligned_cols=190  Identities=15%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             EEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +.+.......+|..+.  ++++.|+++++.+..  +..|.++++|++|+++++.+....-...+.+++.+++|.+..+..
T Consensus        13 i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          13 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             EEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             EEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccc
Confidence            3344333457787764  578999999998764  335789999999999998754321122356789999999887655


Q ss_pred             ceeEE----EeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcC-CCccEEEEee
Q 021480           89 FTHLN----IDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQS  161 (312)
Q Consensus        89 ~~~~~----i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~  161 (312)
                      ...+.    -..++|+.+.+.+. +... ....+.++..+......+..    ..  ...  ...+.++ ..++.|.+..
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~----l~--~i~--~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN----IH--TIE--RNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT----CC--EEC--TTSSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccchhhhcccccccccccccccccccccccc----cc--ccc--ccccccccccceeeeccc
Confidence            43332    24578999988873 3222 12234455555443222110    00  000  0112223 3677777766


Q ss_pred             eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHH-HhhhcCCCcceEEEEecc
Q 021480          162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARP  220 (312)
Q Consensus       162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~-~~L~~~p~Le~L~l~~~~  220 (312)
                      +.+..+..        ..|...+.+++.....  ..+..++ ..+..+++|+.|++..+.
T Consensus       163 n~l~~i~~--------~~~~~~~l~~~~~l~~--n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         163 NGIQEIHN--------CAFNGTQLDELNLSDN--NNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             SCCCEECT--------TTTTTCCEEEEECTTC--TTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccc--------ccccchhhhccccccc--cccccccHHHhcCCCCCCEEECCCCc
Confidence            54432211        1133333333321111  1111232 346889999999996553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.95  E-value=8.5e-08  Score=81.88  Aligned_cols=210  Identities=17%  Similarity=0.114  Sum_probs=128.8

Q ss_pred             CCceEEEEEecC---CcceecCCCcccCCcceEEEeeceeeCCC------------CCCCCCcccceeeecceeeChH--
Q 021480            4 SCVKEFILEIWK---GQRYKVPSSLFLCQNLIHLELFNCLLKPP------------STFKGFRNLKSLDLQHITLSQD--   66 (312)
Q Consensus         4 ~~v~eL~l~~~~---~~~~~lp~~l~~~~~L~~L~L~~~~l~~~------------~~~~~l~~L~~L~L~~~~~~~~--   66 (312)
                      ..+++|+|+...   .+...+-..+...++|+.|+++++.....            ..+..+++|+.|+|++|.+++.  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            457788875332   12234555567789999999998754321            1134678999999999988764  


Q ss_pred             -HHHHHHhCCcccceeeeeccCCce----------------eEEEeCCCcceEEEeec-cc-----ce--eeecCCcceE
Q 021480           67 -VFENLISSSPTLERLTLMNFDGFT----------------HLNIDAPNLQFFDIGGV-FD-----DV--TFENTFHLAL  121 (312)
Q Consensus        67 -~l~~ll~~cp~Le~L~l~~~~~~~----------------~~~i~~p~L~~L~~~~~-~~-----~~--~~~~~~~L~~  121 (312)
                       .+...+..++.|+.|.+.+|....                ......+.|+.+.+.+. +.     .+  .+...+.|+.
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~  190 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  190 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             cchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcc
Confidence             455667789999999999875210                00113568888887763 11     11  1346788999


Q ss_pred             EEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH
Q 021480          122 VSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA  201 (312)
Q Consensus       122 l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l  201 (312)
                      ++++.+.....      +....+...+..+++++.|+++.+.+...........+. ..++|++|.++.+.-...++..+
T Consensus       191 L~L~~n~i~~~------g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~-~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         191 VKMVQNGIRPE------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             EECCSSCCCHH------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHH
T ss_pred             ccccccccccc------ccccchhhhhcchhhhccccccccccccccccccccccc-ccccchhhhhhcCccCchhhHHH
Confidence            98864321100      001123344667899999999877542110001111122 36789999885443344555567


Q ss_pred             HHhhhcC--CCcceEEEEecc
Q 021480          202 LCLLRSS--PNLQELEMLARP  220 (312)
Q Consensus       202 ~~~L~~~--p~Le~L~l~~~~  220 (312)
                      ...+..+  +.|+.|+++.+.
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHhhhccCCCCCEEECCCCc
Confidence            7777654  679999997764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.69  E-value=1.1e-05  Score=62.32  Aligned_cols=105  Identities=17%  Similarity=0.152  Sum_probs=71.9

Q ss_pred             CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|+|+..... ..++. .+..+++|+.|+|+++.+..  +..+..+++|+.|+|+++.++.- ....+.+.+.|++
T Consensus        29 ~~l~~L~Ls~N~i~-~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCc-ccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCcccc
Confidence            35777777554432 12434 34568999999999997754  45678899999999999987531 1235678999999


Q ss_pred             eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480           81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY  127 (312)
Q Consensus        81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~  127 (312)
                      |+|+++.-.. +                ..-.+..+++|++++++.+
T Consensus       107 L~L~~N~l~~-i----------------~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         107 LNLYDNQISC-V----------------MPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCE-E----------------CTTSSTTCTTCCEEECTTC
T ss_pred             cccCCccccc-c----------------CHHHhcCCccccccccccc
Confidence            9998874321 1                1123456778888887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.56  E-value=4e-06  Score=65.38  Aligned_cols=98  Identities=19%  Similarity=0.134  Sum_probs=70.8

Q ss_pred             CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCC-CCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480            4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTF-KGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT   82 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~   82 (312)
                      .++++|+++....  ..++ .+..+++|+.|+|++|.+...+.+ ..+++|+.|++++|.++.  +.. +..+++|+.|+
T Consensus        48 ~~L~~L~Ls~n~I--~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEEE--SCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSSEEE
T ss_pred             cccceeECcccCC--CCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-ccccccccccc
Confidence            4577888755432  2454 477899999999999998764443 446789999999999865  332 56789999999


Q ss_pred             eeccCC--ceeEE--EeCCCcceEEEeec
Q 021480           83 LMNFDG--FTHLN--IDAPNLQFFDIGGV  107 (312)
Q Consensus        83 l~~~~~--~~~~~--i~~p~L~~L~~~~~  107 (312)
                      +++|..  +..+.  -..|+|+.|.+.|+
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccchhccccccccccCCCccceeecCCC
Confidence            998742  21111  14589999999884

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=1.9e-05  Score=58.93  Aligned_cols=75  Identities=20%  Similarity=0.150  Sum_probs=56.0

Q ss_pred             ecCCcceecCCCcccCCcceEEEeecee-eCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480           13 IWKGQRYKVPSSLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      +.......+|..+...++|+.|++.+++ +..  +..|.++++|+.|+|+++.++.- -...+...++|++|+|+++.-
T Consensus        15 c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             CCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC
T ss_pred             ecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCc-ccccccccccccceeccCCCC
Confidence            3444446788888888999999998763 543  44688899999999999987532 124577889999999987753

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.5e-05  Score=58.88  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC---CCCCCCCcccceeeecce-eeChHHHHHHHhCCccc
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHI-TLSQDVFENLISSSPTL   78 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~-~~~~~~l~~ll~~cp~L   78 (312)
                      +++++|+++....  ..+|.. +..+++|++|++++|.+..   +..+.++++++.+.+..+ .+... ....+.++|.|
T Consensus        29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~-~~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEE-CTTSEECCTTC
T ss_pred             CCCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccc-ccccccccccc
Confidence            4688888865443  478875 4578999999999996532   345678999999987654 33221 12356889999


Q ss_pred             ceeeeeccC
Q 021480           79 ERLTLMNFD   87 (312)
Q Consensus        79 e~L~l~~~~   87 (312)
                      +.|.+.++.
T Consensus       106 ~~l~l~~~~  114 (242)
T d1xwdc1         106 QYLLISNTG  114 (242)
T ss_dssp             CEEEEESCC
T ss_pred             cccccchhh
Confidence            999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=9.5e-05  Score=64.22  Aligned_cols=118  Identities=19%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             cccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeecccce--eeecCCcceEEEEeEEE
Q 021480           51 RNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV--TFENTFHLALVSIGLYV  128 (312)
Q Consensus        51 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~  128 (312)
                      ++|++|+++++.+++..+..++..++.|+.|+|.+|....               .+...+  .+..+++|++++++.+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~---------------~~~~~l~~~L~~~~~L~~LdLs~N~   66 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE---------------ARCKDISSALRVNPALAELNLRSNE   66 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH---------------HHHHHHHHHHHTCTTCCEEECTTCC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH---------------HHHHHHHHHHhcCCCCCEEECcCCc
Confidence            3567777777777777677777777777777777663211               011111  13456667777665332


Q ss_pred             eecCCccCCCCcchhHHHHhh-cCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480          129 NVKNDQAMGPGNSCKLLRFFV-HLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN  191 (312)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~l~-~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~  191 (312)
                      ..+       .....+...+. ..+++++|++..+.+........+..+. ..++|++|.+..+
T Consensus        67 i~~-------~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~-~~~~L~~L~L~~N  122 (460)
T d1z7xw1          67 LGD-------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDN  122 (460)
T ss_dssp             CHH-------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSS
T ss_pred             CCh-------HHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh-ccccccccccccc
Confidence            100       00011112121 2347899998876542110001111122 3667888887543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00023  Score=52.78  Aligned_cols=81  Identities=19%  Similarity=0.154  Sum_probs=55.3

Q ss_pred             CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480            4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER   80 (312)
Q Consensus         4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~   80 (312)
                      .++++|.++-.. ....+|.. +..+++|+.|++++|.+..  +..|.++++|++|+|+++.++.  ++.-+...+.|+.
T Consensus        31 ~~l~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--l~~~~~~~~~l~~  107 (156)
T d2ifga3          31 ENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLSLQE  107 (156)
T ss_dssp             SCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCCCCE
T ss_pred             cccCeeecCCCc-cccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc--cChhhhccccccc
Confidence            456777664222 12356654 5568999999999998764  4558899999999999998753  2212223446888


Q ss_pred             eeeeccC
Q 021480           81 LTLMNFD   87 (312)
Q Consensus        81 L~l~~~~   87 (312)
                      |+|.++.
T Consensus       108 L~L~~Np  114 (156)
T d2ifga3         108 LVLSGNP  114 (156)
T ss_dssp             EECCSSC
T ss_pred             cccCCCc
Confidence            8887653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.04  E-value=0.0005  Score=51.41  Aligned_cols=21  Identities=5%  Similarity=0.161  Sum_probs=14.1

Q ss_pred             HHHHHHhhhcCCCcceEEEEe
Q 021480          198 NLAALCLLRSSPNLQELEMLA  218 (312)
Q Consensus       198 ~~~l~~~L~~~p~Le~L~l~~  218 (312)
                      ...+...+...+.|+.|.++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence            345677777778887776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.99  E-value=0.00052  Score=51.22  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=25.4

Q ss_pred             cCCcceEEEEEEcC--ChhhHHHHHHhhhcCCCcceEEEEec
Q 021480          180 CVDLNYLSIRINFN--DLEENLAALCLLRSSPNLQELEMLAR  219 (312)
Q Consensus       180 f~~L~~L~l~~~~~--~~~~~~~l~~~L~~~p~Le~L~l~~~  219 (312)
                      .++|+.+.|+.+..  .......+...++.+++|++|.+...
T Consensus       101 ~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         101 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            34566655543322  23445567888889999999988543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.75  E-value=0.003  Score=52.33  Aligned_cols=88  Identities=23%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCC-cccceeee
Q 021480            5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSS-PTLERLTL   83 (312)
Q Consensus         5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~l   83 (312)
                      ++++|+++..  ....+|+.   .++|++|+|+++++...+.  .+.+|+.|++.++.++.  +    ... +.|++|++
T Consensus        39 ~l~~LdLs~~--~L~~lp~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~~--l----~~lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNL--GLSSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA--L----SDLPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTS--CCSCCCSC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC--C----CSCCTTCCEEEC
T ss_pred             CCCEEEeCCC--CCCCCCCC---CCCCCEEECCCCCCccccc--chhhhhhhhhhhcccch--h----hhhccccccccc
Confidence            4566665433  23467754   3678888888887765333  35678888888876642  1    122 35888888


Q ss_pred             eccCCceeEE--EeCCCcceEEEee
Q 021480           84 MNFDGFTHLN--IDAPNLQFFDIGG  106 (312)
Q Consensus        84 ~~~~~~~~~~--i~~p~L~~L~~~~  106 (312)
                      .++... .+.  ...++|+.+.+.+
T Consensus       106 ~~n~l~-~lp~~~~l~~L~~L~l~~  129 (353)
T d1jl5a_         106 SNNQLE-KLPELQNSSFLKIIDVDN  129 (353)
T ss_dssp             CSSCCS-SCCCCTTCTTCCEEECCS
T ss_pred             cccccc-cccchhhhccceeecccc
Confidence            766421 111  1235666666655

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.64  E-value=0.001  Score=49.56  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=32.7

Q ss_pred             cCCcceEEEeece-eeCCC------CCCCCCcccceeeecceeeChH---HHHHHHhCCcccceeeeecc
Q 021480           27 LCQNLIHLELFNC-LLKPP------STFKGFRNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNF   86 (312)
Q Consensus        27 ~~~~L~~L~L~~~-~l~~~------~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~~   86 (312)
                      ++++|+.|+|+++ .+.+.      ..+...+.|++|+|+++.++++   .+...+..++.|+.|++.+|
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence            3466666666653 33320      1123556666777776666543   23344555666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.39  E-value=0.0038  Score=51.67  Aligned_cols=52  Identities=19%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             CcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeec
Q 021480           50 FRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGV  107 (312)
Q Consensus        50 l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~  107 (312)
                      +++|++|+|++|.++.  ++   ...|+|+.|++.+|.- ..+.-..++|+.|.++++
T Consensus       283 ~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~L-~~l~~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNHL-AEVPELPQNLKQLHVEYN  334 (353)
T ss_dssp             CTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCccCc--cc---cccCCCCEEECCCCcC-CccccccCCCCEEECcCC
Confidence            4566666666665532  11   2356666666665531 122222346666666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.36  E-value=0.0019  Score=48.06  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=43.8

Q ss_pred             CCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeE----ecch
Q 021480          181 VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGI----SGIR  256 (312)
Q Consensus       181 ~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~----~~~~  256 (312)
                      .+|++|.++.+......+..+...|..++.|+.|.+..+.....+..   ......  ....+|+.+.+.+.    -|.+
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~---~l~~aL--~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA---RLLRST--LVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH---HHHHHT--TTTCCCSEEECCCCSSCCCCHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH---HHHHHH--HhCCcCCEEECCCCcCCCccHH
Confidence            34555555322222223334555556666666666655432110000   000000  01245666666532    2334


Q ss_pred             hHHHHHHHHHccCcccceeEEecCC
Q 021480          257 SELEFIKFVLSNSPVLETMTIKPAS  281 (312)
Q Consensus       257 ~~~~~~~~ll~~~~~Le~~~i~~~~  281 (312)
                      ...+++..+ +.-+.|+++.++...
T Consensus       119 ~~~~l~~~L-~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAI-EENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             HHHHHHHHH-HhCCCccEeeCcCCC
Confidence            455666655 445788888876654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0011  Score=49.09  Aligned_cols=60  Identities=27%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             cCCcceEEEeeceeeCCCCC----CCCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCC
Q 021480           27 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDG   88 (312)
Q Consensus        27 ~~~~L~~L~L~~~~l~~~~~----~~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~   88 (312)
                      .+++|++|+|++|++.....    +..+++|+.|+|++|.+++ ..+.. + ..+.|+.|++.++..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCCCc
Confidence            57899999999998876432    3568999999999999864 33333 2 455799999998753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.0046  Score=45.63  Aligned_cols=60  Identities=23%  Similarity=0.319  Sum_probs=42.3

Q ss_pred             CCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCCce--eE-EEeCCCcceEEEeec
Q 021480           48 KGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDGFT--HL-NIDAPNLQFFDIGGV  107 (312)
Q Consensus        48 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~--~~-~i~~p~L~~L~~~~~  107 (312)
                      ..+++|++|+|++|+++. ..+...+..||+|+.|+++++....  .+ .+..+.|+.+.+.|+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCC
Confidence            468999999999999865 2355567789999999999885321  11 123456666666663