Citrus Sinensis ID: 021573

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRSHHPIF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEccccEEEccccHccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHEEEEEEEEEEHHHHcccccccccc
Coil and Loop (DISEMBL)
mssstkkkrpkpksnsssssssssssswswmteppqslfpskqDLLRLITVVAIASSVALTCNYLANflnstskpfcdsnllldspqsptdscepcpsngechqgklecfhgyrkhgklcvedgdinetaGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFeldnpvylytkkrTMETVGRYLEsrtnsygmkelkcpellaehykplscrihqwvSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHqvynpffpplsrsmVSSFLIYQFVVTccklrscrshhpif
Flexible Loop (DISEMBL)
mssstkkkrpkpksnssssssssssssWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRylesrtnsygmKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRSHHPIF
Low Complexity Region (SEG)
MssstkkkrpkpksnsssssssssssswsWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPvcsllvgcllllWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRSHHPIF
Disordered region (IsUnstruct)
******************************************QDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLL*******************CHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSC*******
Disordered Region (DISOPRED)
*************************************LFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRS*****
Disordered Region (DISEMBL)
**********************************PQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDS***************ECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRS********
Disordered Region (DISPRO)
*********************************PPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVSSFLIYQFVVTCCKLRSCRSHHPIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
255575726	373	conserved hypothetical protein [Ricinus	0.835	0.694	0.580	5e-89
224138028	382	predicted protein [Populus trichocarpa]	0.851	0.691	0.588	2e-86
225427312	383	PREDICTED: uncharacterized protein LOC10	0.854	0.691	0.548	5e-77
356540585	381	PREDICTED: uncharacterized protein LOC10	0.803	0.653	0.548	5e-73
356495558	377	PREDICTED: uncharacterized protein LOC10	0.790	0.649	0.550	8e-73
449461577	404	PREDICTED: uncharacterized protein LOC10	0.864	0.663	0.517	3e-71
449510808	280	PREDICTED: uncharacterized LOC101208017,	0.861	0.953	0.516	5e-71
357482303	374	hypothetical protein MTR_5g014010 [Medic	0.754	0.625	0.510	2e-67
240256408	387	uncharacterized protein [Arabidopsis tha	0.854	0.684	0.487	3e-63
297794583	389	hypothetical protein ARALYDRAFT_494322 [	0.819	0.652	0.445	2e-53

>gi|255575726|ref|XP_002528762.1| conserved hypothetical protein [Ricinus communis] gi|223531765|gb|EEF33584.1| conserved hypothetical protein [Ricinus communis]

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/272 (58%), Positives = 200/272 (73%), Gaps = 13/272 (4%)

Query: 1   MSSSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVAL 60
           MSSS+  KR KP        + S SSS + +T PP +LFPSK++ +RLI V+AIASSVA 
Sbjct: 1   MSSSSTNKRRKP--------NLSPSSSPTLLTGPPNNLFPSKEEFVRLIAVLAIASSVAF 52

Query: 61  TCNYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLC 120
           TCN +A ++N ++KPFCDSN       S ++ C PCP NGEC QGKLEC  GYRKH  +C
Sbjct: 53  TCNLIATYINPSTKPFCDSNT-----DSFSEFCVPCPENGECTQGKLECAEGYRKHRNIC 107

Query: 121 VEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDN 180
           +EDGDINE A +LS WVEN LC AYAQ+LCDG G+IW ++NDIW DL+GH+LM+ F+ DN
Sbjct: 108 IEDGDINERAKKLSEWVENHLCEAYAQYLCDGIGTIWFQDNDIWYDLDGHQLMENFQPDN 167

Query: 181 PVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVP 240
             Y+Y K++ ME + R LE RTNS+G KELKCP+L+AEHYKP +CR  QW+S HA +I  
Sbjct: 168 ATYIYAKRKAMEMIVRLLEIRTNSHGNKELKCPDLVAEHYKPFTCRFRQWISNHAFVIAS 227

Query: 241 VCSLLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
           +CSL+VG +LLL K+ RR Y + R EELYHQV
Sbjct: 228 LCSLVVGAVLLLRKLQRRWYLSARGEELYHQV 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138028|ref|XP_002326500.1| predicted protein [Populus trichocarpa] gi|222833822|gb|EEE72299.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 159/270 (58%), Positives = 203/270 (75%), Gaps = 6/270 (2%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           SST K+RPK   +SSSS   + SS      EPP +LFPSKQ+ LRLI V+AIASSVALTC
Sbjct: 2   SSTPKRRPKRDLSSSSSHPYTISSK----IEPPHNLFPSKQEFLRLIAVLAIASSVALTC 57

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           N++AN+++ ++KPFCD++L   S  S ++SCEPCP NGEC+QGKLEC  GYRKH   C+E
Sbjct: 58  NFIANYIDHSTKPFCDTSLD--SSDSLSNSCEPCPRNGECNQGKLECARGYRKHRNTCIE 115

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGD+ E A +L   VEN LC AYA FLC GTG +WV+E+DI NDL+GH+L++ +  DNPV
Sbjct: 116 DGDVYERAKKLLEGVENHLCEAYADFLCYGTGIMWVQEDDILNDLDGHQLLENYSSDNPV 175

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
           Y+YTK + MET+   L++RTN  G KE KCP+LL EHYKP +C + QW+S HAL+IVPVC
Sbjct: 176 YVYTKMKAMETISEELQTRTNPNGKKEFKCPDLLVEHYKPFTCHLRQWISEHALVIVPVC 235

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
           +L+VG   L+WK+ RR Y + R EELYHQV
Sbjct: 236 ALVVGFAFLVWKIRRRWYLSTRGEELYHQV 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427312|ref|XP_002282079.1| PREDICTED: uncharacterized protein LOC100243743 [Vitis vinifera] gi|297742158|emb|CBI33945.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 148/270 (54%), Positives = 204/270 (75%), Gaps = 5/270 (1%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           +ST +KRPKP  +S S+ S SSSSS + + EPP++ FPSK +L +L+ V+AIA+SVA  C
Sbjct: 2   ASTPRKRPKP--HSKSTHSPSSSSSLNALMEPPENFFPSKPELFKLLAVIAIATSVAALC 59

Query: 63  NYLANFLNSTSKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVE 122
           NY+   L+  SKPFCD+N   DS   P+D CEPCPSN EC+QG +EC  GYRKHGKLC+E
Sbjct: 60  NYVVTILSRHSKPFCDTNA--DSQYLPSDLCEPCPSNAECYQGMMECVRGYRKHGKLCIE 117

Query: 123 DGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPV 182
           DGDINETA +L+  +E  +C  YAQFLC GTGS+WV+E+++WND++  ++M+   L+N +
Sbjct: 118 DGDINETAKKLANRIETHVCEGYAQFLC-GTGSVWVQEDEVWNDVDELKMMENLGLENAI 176

Query: 183 YLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVC 242
            ++TK+R ME +   LE++ N  G+KELKCP LLAEHYKP SCR+ QW+S HAL+++P+C
Sbjct: 177 DMHTKQRAMEMIDGLLETKINHRGIKELKCPNLLAEHYKPFSCRVQQWISNHALVLMPIC 236

Query: 243 SLLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
            LLVG +LLL ++ +RR  + R EELY+Q+
Sbjct: 237 GLLVGSILLLRRIRQRRNLSARAEELYNQI 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540585|ref|XP_003538768.1| PREDICTED: uncharacterized protein LOC100784375 [Glycine max]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 182/257 (70%), Gaps = 8/257 (3%)

Query: 19  SSSSSSSSSWSWMT-EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPF 76
           S+S+S   S S M  EPPQ+L PSK D  RL+ V+A+AS VA TCN+L  +  +  SKPF
Sbjct: 12  SNSNSEGCSLSLMGREPPQNLLPSKHDFPRLVLVIALASLVAWTCNFLFTSLFHPPSKPF 71

Query: 77  CDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRW 136
           CD+NL   SP    D C+PCPSNGEC+ GKLEC  GY++HG LC EDGDINE+A +L   
Sbjct: 72  CDTNL--HSPDYFLDICQPCPSNGECNDGKLECHQGYQRHGNLCAEDGDINESARKLLER 129

Query: 137 VENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGR 196
           VE+ LC  YAQFLC GTG IWV E+D+WN  E    +K+   DN +Y YTK+R +ET+G+
Sbjct: 130 VEHHLCEKYAQFLCTGTGIIWVHEDDLWNYFEPVGNVKV---DNALYNYTKQRAVETMGK 186

Query: 197 YLESRTN-SYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKV 255
            LE+R N S+GMKE KCP+ LAEHYKP +C I QW+S H L+++P+C++LVGC  L W V
Sbjct: 187 LLETRLNSSHGMKEFKCPDQLAEHYKPYTCCIRQWISQHILVVLPICAMLVGCTALCWNV 246

Query: 256 HRRRYFAIRVEELYHQV 272
            ++   + RVEELY +V
Sbjct: 247 RQKLSMSRRVEELYDKV 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495558|ref|XP_003516643.1| PREDICTED: uncharacterized protein LOC100779650 [Glycine max]

 Score =  280 bits (715), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 141/256 (55%), Positives = 184/256 (71%), Gaps = 11/256 (4%)

Query: 19  SSSSSSSSSWSWMT-EPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNSTSKPFC 77
           S+S+S S S+S M  EPPQ+L PSK D  RL+ VVA+AS VA TCN    FL + SKPFC
Sbjct: 12  SNSNSESCSFSLMGREPPQNLLPSKHDFPRLVLVVALASLVAWTCN----FLFTPSKPFC 67

Query: 78  DSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWV 137
           D NL   SP   +D CEPCPSNGEC+ GKL+C  GY++HG LCVEDGDINE+A +L   V
Sbjct: 68  DPNL--HSPDYFSDICEPCPSNGECNDGKLKCLQGYQRHGNLCVEDGDINESARKLLERV 125

Query: 138 ENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRY 197
           E+ LC  YAQFLC GTG+IWV E+D+WN  E    +K+   DN +Y YTK++  ET+G+ 
Sbjct: 126 EHHLCEEYAQFLCTGTGTIWVREDDLWNYFEPVGNVKV---DNALYKYTKQKAFETMGKL 182

Query: 198 LESRTN-SYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVH 256
           L++R N S+GMKE KCP+ LAEHYK  +C I QW+S H L+++P+C++LVGC  L W V 
Sbjct: 183 LDTRLNSSHGMKEFKCPDQLAEHYKSYACCIRQWISQHILVVLPICAMLVGCTALFWSVR 242

Query: 257 RRRYFAIRVEELYHQV 272
           ++   + R+EELY++V
Sbjct: 243 QKLCMSRRIEELYNKV 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461577|ref|XP_004148518.1| PREDICTED: uncharacterized protein LOC101208017 [Cucumis sativus]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/282 (51%), Positives = 188/282 (66%), Gaps = 14/282 (4%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSW-----------MTEPPQSLFPSKQDLLRLITV 51
           SST KKR K K N +S   S S S               + EPP+  FPSK DL  LITV
Sbjct: 2   SSTPKKRTKVKRNPNSDVGSGSGSGVDSSVSSSSLLLKSIKEPPRDFFPSKDDLAALITV 61

Query: 52  VAIASSVALTCNYLANFLNSTSK-PFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECF 110
           + IA  V ++CN+  + L+S    PFCD++   DS    +D CEPCP +GEC  GKLEC 
Sbjct: 62  LIIACFVFVSCNFFVSRLSSRHPIPFCDTDA--DSSDFISDVCEPCPRHGECRDGKLECL 119

Query: 111 HGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGH 170
           HGYRKHG+LC+EDG INE   +LS W+E+ LC A A+FLCDG G +WV+ENDIW+DL+G 
Sbjct: 120 HGYRKHGRLCIEDGVINEAVNKLSEWLESHLCEANAKFLCDGIGIVWVKENDIWDDLDGK 179

Query: 171 ELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQW 230
           EL++    DN   +Y K + +ET+G  L++R NS G+KELKCP+LLAE YKP +CRI  W
Sbjct: 180 ELVESIGSDNTTLMYAKSKALETIGGLLQTRQNSLGIKELKCPDLLAESYKPFTCRIRHW 239

Query: 231 VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
           V  HA +++PV  LLVGC  LLWK++RR+Y   R E+LY+QV
Sbjct: 240 VLQHAFVVLPVFLLLVGCTWLLWKLYRRQYLTNRAEDLYNQV 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510808|ref|XP_004163763.1| PREDICTED: uncharacterized LOC101208017, partial [Cucumis sativus]

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 145/281 (51%), Positives = 187/281 (66%), Gaps = 14/281 (4%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSW-----------MTEPPQSLFPSKQDLLRLITV 51
           SST KKR K K N +S   S S S               + EPP+  FPSK DL  LITV
Sbjct: 2   SSTPKKRTKVKRNPNSDVGSGSGSGVDSSVSSSSLLLKSIKEPPRDFFPSKDDLAALITV 61

Query: 52  VAIASSVALTCNYLANFLNSTSK-PFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECF 110
           + IA  V ++CN+  + L+S    PFCD++   DS    +D CEPCP +GEC  GKLEC 
Sbjct: 62  LIIACFVFVSCNFFVSRLSSRHPIPFCDTDA--DSSDFISDVCEPCPRHGECRDGKLECL 119

Query: 111 HGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGH 170
           HGYRKHG+LC+EDG INE   +LS W+E+ LC A A+FLCDG G +WV+ENDIW+DL+G 
Sbjct: 120 HGYRKHGRLCIEDGVINEAVNKLSEWLESHLCEANAKFLCDGIGIVWVKENDIWDDLDGK 179

Query: 171 ELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQW 230
           EL++    DN   +Y K + +ET+G  L++R NS G+KELKCP+LLAE YKP +CRI  W
Sbjct: 180 ELVESIGSDNTTLMYAKSKALETIGGLLQTRQNSLGIKELKCPDLLAESYKPFTCRIRHW 239

Query: 231 VSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQ 271
           V  HA +++PV  LLVGC  LLWK++RR+Y   R E+LY+Q
Sbjct: 240 VLQHAFVVLPVFLLLVGCTWLLWKLYRRQYLTNRAEDLYNQ 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482303|ref|XP_003611437.1| hypothetical protein MTR_5g014010 [Medicago truncatula] gi|355512772|gb|AES94395.1| hypothetical protein MTR_5g014010 [Medicago truncatula]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/241 (51%), Positives = 173/241 (71%), Gaps = 7/241 (2%)

Query: 33  EPPQSLFPSKQDLLRLITVVAIASSVALTCNYL-ANFLNSTSKPFCDSNLLLDSPQSPTD 91
           EPP +L PSK +  +L+ V+ +AS VA + N L  +FL+ ++KPFCD+N L +    P D
Sbjct: 22  EPPPNLLPSKHEFPKLLLVLTVASLVAWSSNLLFTSFLHPSTKPFCDTNSLHN--HFP-D 78

Query: 92  SCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLCD 151
           SCEPCPSNGEC+ GKLEC  GY+KHG LCVEDGDIN++A +++  VE  LC  YAQFLC 
Sbjct: 79  SCEPCPSNGECNDGKLECLRGYQKHGNLCVEDGDINDSARKIADTVERHLCGEYAQFLCS 138

Query: 152 GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMKELK 211
           GTGSIWV ++D+WN +E  E +K     N +Y YTK++  + + + LE R  ++GMKE K
Sbjct: 139 GTGSIWVHDDDLWNYIEPVENVK---EGNALYNYTKQKAFDMMDKLLEMRLTTHGMKEFK 195

Query: 212 CPELLAEHYKPLSCRIHQWVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRVEELYHQ 271
           CP+ L E YKP +CR+ QW++ H L+++P+C++LVGC++L W V R+   + RVEELY++
Sbjct: 196 CPDSLVEQYKPYACRLRQWITQHILVVLPICAMLVGCMILFWNVRRKLRVSRRVEELYNK 255

Query: 272 V 272
           V
Sbjct: 256 V 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256408|ref|NP_199468.5| uncharacterized protein [Arabidopsis thaliana] gi|332008015|gb|AED95398.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/271 (48%), Positives = 178/271 (65%), Gaps = 6/271 (2%)

Query: 4   STKKKRPKPKSNSSSSSSSSSSSS-WSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
           S  +KRPK ++ +  +  SSSSSS    M EPPQSLFPSK +   L+ V+ +A +VA TC
Sbjct: 3   SIPRKRPKSETRTGRTPKSSSSSSPIRSMLEPPQSLFPSKGEFFTLLKVLLVACAVAFTC 62

Query: 63  NYLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCV 121
           N+L+  L+S  SK FCDSN   +   S  D CEPCP NGEC+QGKL+C  GY+    LCV
Sbjct: 63  NFLSKSLSSNPSKSFCDSN--FNPIDSDLDICEPCPINGECYQGKLQCNLGYKNQRNLCV 120

Query: 122 EDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNP 181
           EDG+INE+  +L  + E ++C +YA   C GTG+IWV END+W +L  +  +    LD  
Sbjct: 121 EDGEINESTKKLVGYFERKVCESYAHNECYGTGTIWVPENDVWTELRSNSFLS--NLDES 178

Query: 182 VYLYTKKRTMETVGRYLESRTNSYGMKELKCPELLAEHYKPLSCRIHQWVSTHALIIVPV 241
            Y + K + +E V   LE RTNS G+ ELKCPE +A+ YKPL+CR+HQW+  H LII   
Sbjct: 179 AYNFLKGKAVEGVTELLEKRTNSNGIDELKCPESVAKSYKPLTCRLHQWILRHILIISSS 238

Query: 242 CSLLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
           C++LVG  +L  ++ R++ F+ RVEELY QV
Sbjct: 239 CAMLVGSAMLRRRIQRKQCFSRRVEELYDQV 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794583|ref|XP_002865176.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata] gi|297311011|gb|EFH41435.1| hypothetical protein ARALYDRAFT_494322 [Arabidopsis lyrata subsp. lyrata]

 Score =  215 bits (547), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/274 (44%), Positives = 161/274 (58%), Gaps = 20/274 (7%)

Query: 3   SSTKKKRPKPKSNSSSSSSSSSSSSWSWMTEPPQSLFPSKQDLLRLITVVAIASSVALTC 62
            S  +KRPK ++ +   +  SSSS    M EPPQS FPSK++  RL+ V+ +A  VA TC
Sbjct: 2   DSIPRKRPKSETRTPKRNPKSSSSPIRSMLEPPQSFFPSKEEFFRLLKVLLVACVVAFTC 61

Query: 63  NYLANFLNST-SKPFCDSNLLLDSPQSPTDSCEPCPSNGECHQGKLECFHGYRKHGKLCV 121
           N+LA  L+S  +K FCDSN   DS +S  D CEPCP NGEC QGKL+C  GY+K   LCV
Sbjct: 62  NFLAKSLSSNPTKSFCDSNY--DSIESDLDFCEPCPINGECCQGKLKCNLGYKKQRNLCV 119

Query: 122 EDGDINETAGRLSRWVENRLCRAYAQFLCDGTGSIWVEENDIWNDLEGHELMKIFELDNP 181
           EDG+INE+  +L  + E ++C AYA   C GTG+IWV END+W +L  +  +    LD  
Sbjct: 120 EDGEINESTKKLVGYFERKVCEAYAHNECYGTGAIWVPENDVWEELRSNSFLN--NLDES 177

Query: 182 VYLYTKKRTMETVGRYLESRTNSYGMK--ELKCPELLAEHYKPLSCRIHQWVSTHALIIV 239
            Y + K + +E V   LE RTNS G K   L  P                 +  H   +V
Sbjct: 178 AYNFLKGKAVEAVTELLEKRTNSNGRKLQTLDLPH------------ASMALEAHLNYLV 225

Query: 240 PVCS-LLVGCLLLLWKVHRRRYFAIRVEELYHQV 272
            +C+ +LVG  +L  K+ R+RYF+ RVEELY QV
Sbjct: 226 RMCNGILVGSAILRRKIQRKRYFSRRVEELYDQV 259

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2142310	387	AT5G46560 "AT5G46560" [Arabido	0.764	0.612	0.479	9.3e-59

TAIR|locus:2142310 AT5G46560 "AT5G46560" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 117/244 (47%), Positives = 155/244 (63%)

Query:    31 MTEPPQSLFPSKQDLLRLITVVAIASSVALTCNYLANFLNST-SKPFCDSNLLLDSP-QS 88
             M EPPQSLFPSK +   L+ V+ +A +VA TCN+L+  L+S  SK FCDSN    +P  S
Sbjct:    31 MLEPPQSLFPSKGEFFTLLKVLLVACAVAFTCNFLSKSLSSNPSKSFCDSNF---NPIDS 87

Query:    89 PTDSCEPCPSNGECHQGKLECFHGYRKHGKLCVEDGDINETAGRLSRWVENRLCRAYAQF 148
               D CEPCP NGEC+QGKL+C  GY+    LCVEDG+INE+  +L  + E ++C +YA  
Sbjct:    88 DLDICEPCPINGECYQGKLQCNLGYKNQRNLCVEDGEINESTKKLVGYFERKVCESYAHN 147

Query:   149 LCDGTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESRTNSYGMK 208
              C GTG+IWV END+W +L  +  +    LD   Y + K + +E V   LE RTNS G+ 
Sbjct:   148 ECYGTGTIWVPENDVWTELRSNSFLS--NLDESAYNFLKGKAVEGVTELLEKRTNSNGID 205

Query:   209 ELKCPELLAEHYKPLSCRIHQWVSTHALIIVPXXXXXXXXXXXXWKVHRRRYFAIRVEEL 268
             ELKCPE +A+ YKPL+CR+HQW+  H LII               ++ R++ F+ RVEEL
Sbjct:   206 ELKCPESVAKSYKPLTCRLHQWILRHILIISSSCAMLVGSAMLRRRIQRKQCFSRRVEEL 265

Query:   269 YHQV 272
             Y QV
Sbjct:   266 YDQV 269


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.451    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      310       270   0.00097  114 3  11 22  0.43    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  249 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.30u 0.17s 24.47t   Elapsed:  00:00:02
  Total cpu time:  24.30u 0.17s 24.47t   Elapsed:  00:00:02
  Start:  Mon May 20 21:38:25 2013   End:  Mon May 20 21:38:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005639 "integral to nuclear inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam09402	326	pfam09402, MSC, Man1-Src1p-C-terminal domain	8e-11

>gnl|CDD|220221 pfam09402, MSC, Man1-Src1p-C-terminal domain

 Score = 61.7 bits (150), Expect = 8e-11
 Identities = 44/254 (17%), Positives = 75/254 (29%), Gaps = 67/254 (26%)

Query: 67  NFLNSTSKPFCDSNLLLDS-------PQSPTDSCEPCPSNGECHQG-KLECFHGYRK--- 115
                 +  FC S     S        +     C PCP N  C+ G KL+C  G++    
Sbjct: 14  YREQKIAVGFCGSGAPTYSLALTPSFLERLKPQCIPCPPNAICYPGLKLKCEPGFKLKPH 73

Query: 116 -------HGKLCVEDGDINETAGRLSRWVENRLCRAYAQFLC-DGTGSIWVEENDIWNDL 167
                      C+ D +  E    L       L +  A+  C +   S  + EN+++   
Sbjct: 74  PLSLLGLIPPKCIPDTEKEELVSELVDKALEELRKRNAKHECGEDDLSPGISENELYE-- 131

Query: 168 EGHELMKIFELDNPVYLYTKKRTMETVGRY-----------LESRTNSYGMKELKCPELL 216
                           L  KK        +            E+       + +      
Sbjct: 132 ---------------LLSEKKSPWINEEEFEDLWKAAIKELKENPEVVIRPEPILSKNGD 176

Query: 217 AEH------------YKPLSCRI----HQWVSTHALIIVPVCSLLVGCLLL--LWKVHRR 258
                          Y PLSCR       ++  + L+++ +  LL+    +    K  R 
Sbjct: 177 GSTETQKTLRSSSLAYLPLSCRFRRFVRLFLKRYRLLLLGLIILLLVVFYIRYRIKKKRE 236

Query: 259 RYFAIRVEELYHQV 272
                +VEEL  ++
Sbjct: 237 E--KAQVEELVKKI 248

MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C terminal nucleoplasmic region forms a DNA binding winged helix and binds to Smad. This C-terminal tail is also found in S. cerevisiae and is thought to consist of three conserved helices followed by two downstream strands. Length = 326

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
PF09402	334	MSC: Man1-Src1p-C-terminal domain; InterPro: IPR01	100.0
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	95.14
PF01683	52	EB: EB module; InterPro: IPR006149 The EB domain h	86.8

>PF09402 MSC: Man1-Src1p-C-terminal domain; InterPro: IPR018996 This entry represents the Inner nuclear membrane proteins MAN1 (also known as LEM domain-containing protein 3) and LEM domain-containing protein 2 (or LEM protein 2)

Probab=100.00  E-value=2.3e-41  Score=320.33  Aligned_cols=212  Identities=24%  Similarity=0.385  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCCCCCC--------------CCCCCCCccCCCCccccCC-eeeecCCceec-----------CCccccCc
Q 021573           71 STSKPFCDSNLLLDSP--------------QSPTDSCEPCPSNGECHQG-KLECFHGYRKH-----------GKLCVEDG  124 (310)
Q Consensus        71 ~~~~~FCDS~~~~~~~--------------~~~~p~CePCP~nA~C~~g-~v~C~~Gyvl~-----------~~~Cv~D~  124 (310)
                      +...+|||++.  ++.              +...|+|+|||+||+|++| ++.|++||+++           +++|++|+
T Consensus        18 ~~~vgyC~~~~--~~~~~~~~~~~~~~~~~~~~~P~C~pCP~~a~C~~~~~~~C~~~y~~~~~~l~~~g~~p~~~Ci~D~   95 (334)
T PF09402_consen   18 KIAVGYCGTES--PSPSFADDDISVPDWLLENFKPSCEPCPEHAICYPGLKLECEPGYVLKPSPLSLFGLIPPPKCIPDT   95 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccH
Confidence            46899999996  223              3457899999999999999 79999999999           99999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhhcccc---CCCCcceehhhhHhhhhhhhhhhhccCChHHHHHHHHHHHHHHHhhhhhc
Q 021573          125 DINETAGRLSRWVENRLCRAYAQFLCD---GTGSIWVEENDIWNDLEGHELMKIFELDNPVYLYTKKRTMETVGRYLESR  201 (310)
Q Consensus       125 ek~~~i~~va~~i~~~Lr~rrAk~eCg---~~~s~~i~e~DL~~~l~~~~~~~~~~ls~~ef~~l~~~Al~~i~~~le~~  201 (310)
                      +++++++.|++++.++||+++|+++||   +..+..++++||++.+.+++   +..+++++|+++|++|++++.+.-|..
T Consensus        96 ~k~~~i~~l~~~~~~~Lr~~~a~~~Cg~~~~~~~~~ls~~el~~~~~~~~---~~~~~~~efe~l~~~a~~~L~~~~ei~  172 (334)
T PF09402_consen   96 EKEEKIEELAKKILDELRERNAQYECGDSEDDESPGLSEEELKDILSSKK---SPWISDEEFEELWSAALQELKKNPEII  172 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcHHHHHHHHHhcc---CccccHHHHHHHHHHHHHHHHhCCcEE
Confidence            999999999999999999999999999   56688999999999999875   568999999999999999996555543


Q ss_pred             cc------------CCCceEeeccchhhccccCcchHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021573          202 TN------------SYGMKELKCPELLAEHYKPLSCRIHQ----WVSTHALIIVPVCSLLVGCLLLLWKVHRRRYFAIRV  265 (310)
Q Consensus       202 ~~------------s~~~~~~ks~~sls~a~lPlsC~iRr----~I~r~~l~I~~l~~l~~g~~~ir~~i~~rra~~aRv  265 (310)
                      +.            ..+.+.+.++   +++++||+|++++    ++.+|++.|+++++++++++|+++++++++...++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~s~---s~~~lpl~C~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v  249 (334)
T PF09402_consen  173 IRDDIINSHSSDDSNEKDKYFRSS---SLPYLPLKCRLRRQIRQFISRYRLIILGVLILLLLIKYIRYRYRKRREEKARV  249 (334)
T ss_dssp             ----------------------------------------------------------------------STHHHHHTTT
T ss_pred             EecccccccccccccCCcEEEEee---CCCccccEEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33            1233344433   7899999996555    457999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCchhh----hhccchhh
Q 021573          266 EELYHQVYNPFFPPLSR----SMVSSFLI  290 (310)
Q Consensus       266 ~eLv~~v~drL~~~a~~----~~~~~~~~  290 (310)
                      ++||++|+|+|++++..    +-..||+.
T Consensus       250 ~~lv~~ii~~L~~~~~~~~~~~~~~p~v~  278 (334)
T PF09402_consen  250 EELVKKIIDRLQDQARASDPNSSPEPYVS  278 (334)
T ss_dssp             TTTHHHHHHHHHHHHHHHTTSS-S-S-B-
T ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCcc
Confidence            99999999999999993    33666654

Emerin and MAN1 are LEM domain-containing integral membrane proteins of the vertebrate nuclear envelope []. MAN1 is an integral protein of the inner nuclear membrane which binds to chromatin associated proteins and plays a role in nuclear organisation. The C-terminal nulceoplasmic region forms a DNA binding winged helix and binds to Smad []. LEM protein 2 is an essential protein involved in chromosome segregation and cell division, probably via its interaction with lmn-1, the main component of nuclear lamina. Has some overlapping function with emr-1.; GO: 0005639 integral to nuclear inner membrane; PDB: 2CH0_A.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=95.14  E-value=0.0067  Score=42.05  Aligned_cols=28  Identities=43%  Similarity=1.067  Sum_probs=20.5

Q ss_pred             ccCCCCccccC---Ce--eeecCCceecCCccc
Q 021573           94 EPCPSNGECHQ---GK--LECFHGYRKHGKLCV  121 (310)
Q Consensus        94 ePCP~nA~C~~---g~--v~C~~Gyvl~~~~Cv  121 (310)
                      .+||+||.|++   |+  -+|..||++.+.+|+
T Consensus         5 ~~cP~NA~C~~~~dG~eecrCllgyk~~~~~C~   37 (37)
T PF12946_consen    5 TKCPANAGCFRYDDGSEECRCLLGYKKVGGKCV   37 (37)
T ss_dssp             S---TTEEEEEETTSEEEEEE-TTEEEETTEEE
T ss_pred             ccCCCCcccEEcCCCCEEEEeeCCccccCCCcC
Confidence            58999999986   42  599999999999986

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function

Probab=86.80  E-value=0.92  Score=32.25  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=23.7

Q ss_pred             CCCccCCCCccccCCeeeecCCceecCCcc
Q 021573           91 DSCEPCPSNGECHQGKLECFHGYRKHGKLC  120 (310)
Q Consensus        91 p~CePCP~nA~C~~g~v~C~~Gyvl~~~~C  120 (310)
                      .+|.   .++.|.+|.-.|.+||+..+.+|
T Consensus        26 ~qC~---~~s~C~~g~C~C~~g~~~~~~~C   52 (52)
T PF01683_consen   26 EQCI---GGSVCVNGRCQCPPGYVEVGGRC   52 (52)
T ss_pred             CCCC---CcCEEcCCEeECCCCCEecCCCC
Confidence            4555   99999999999999999998877

It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	92.05
1ob1_C	99	Major merozoite surface protein; immune system, im	91.77
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	89.54
2ch0_A	133	Inner nuclear membrane protein MAN1; winged helix	87.09

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=92.05  E-value=0.055  Score=43.47  Aligned_cols=33  Identities=21%  Similarity=0.622  Sum_probs=28.5

Q ss_pred             cCCCCccccC---C-e-eeecCCceecCCccccCchhh
Q 021573           95 PCPSNGECHQ---G-K-LECFHGYRKHGKLCVEDGDIN  127 (310)
Q Consensus        95 PCP~nA~C~~---g-~-v~C~~Gyvl~~~~Cv~D~ek~  127 (310)
                      .||+||.||.   | + -+|-.||++.+.+||+|.+..
T Consensus        11 kcp~NA~Cyr~~dg~EecRCllnykk~~~kCV~~~~~~   48 (95)
T 1b9w_A           11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMT   48 (95)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECTTCC
T ss_pred             CCCCCcCeEEEcCCCEEEEEECCeEecCCEEEcCCCCC
Confidence            7999999997   3 2 599999999999999998543

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=91.77  E-value=0.07  Score=43.16  Aligned_cols=32  Identities=31%  Similarity=0.925  Sum_probs=27.5

Q ss_pred             ccCCCCccccC---Ce--eeecCCceecCCccccCch
Q 021573           94 EPCPSNGECHQ---GK--LECFHGYRKHGKLCVEDGD  125 (310)
Q Consensus        94 ePCP~nA~C~~---g~--v~C~~Gyvl~~~~Cv~D~e  125 (310)
                      .-||+||.|+.   |.  -+|..||...+.+|+++.+
T Consensus        10 ~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~~Cv~~~~   46 (99)
T 1ob1_C           10 KQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPN   46 (99)
T ss_dssp             CCCCTTEEEECCTTSCCEEEECTTEEEETTEEEECSC
T ss_pred             CCCCCCCCeEEcCCCCEEEEecCCeecCCCeEeeCCC
Confidence            36899999998   42  4999999999999999863

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=89.54  E-value=0.13  Score=41.94  Aligned_cols=29  Identities=31%  Similarity=0.830  Sum_probs=26.0

Q ss_pred             cCCCCccccC---C-e-eeecCCceecCCccccC
Q 021573           95 PCPSNGECHQ---G-K-LECFHGYRKHGKLCVED  123 (310)
Q Consensus        95 PCP~nA~C~~---g-~-v~C~~Gyvl~~~~Cv~D  123 (310)
                      -||+||.|+.   | . -+|..||+..+.+|+++
T Consensus        17 ~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~~Cv~~   50 (105)
T 1n1i_A           17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA   50 (105)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEECSSSEEEC
T ss_pred             CCCCCCCeEECCCCCEeEEEECCeeccCCEEEEC
Confidence            6999999997   4 3 59999999999999998

>2ch0_A Inner nuclear membrane protein MAN1; winged helix motif, DNA, nuclear protein; NMR {Homo sapiens}

Probab=87.09  E-value=0.024  Score=48.03  Aligned_cols=38  Identities=0%  Similarity=0.038  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCchhhhhcc----chhh
Q 021573          253 WKVHRRRYFAIRVEELYHQVYNPFFPPLSRSMVS----SFLI  290 (310)
Q Consensus       253 ~~i~~rra~~aRv~eLv~~v~drL~~~a~~~~~~----~~~~  290 (310)
                      +++++++.+.+||.+||++++|+|++++..|...    |||+
T Consensus         5 ~r~~k~~ee~~~v~~LV~~Iid~L~~q~~~~~e~~~~~p~l~   46 (133)
T 2ch0_A            5 FRWTKEEEETRQMYDMVVKIIDVLRSHNEACQENKDLQPYMP   46 (133)
T ss_dssp             CCCSTHHHHHTTTTTTHHHHHHHHHHHHHHHTTSSCSCSCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcee
Confidence            4567788999999999999999999999887654    6664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1ob1c1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	93.99
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	93.46
d1b9wa1	45	Merozoite surface protein 1 (MSP-1) {Malaria paras	92.66
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	82.83
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	82.29
d1wm7a_	29	Neurotoxin bmp01 {Chinese scorpion (Buthus martens	81.17

>d1ob1c1 g.3.11.4 (C:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.99  E-value=0.012  Score=39.48  Aligned_cols=30  Identities=33%  Similarity=0.926  Sum_probs=26.7

Q ss_pred             cCCCCccccCC-----eeeecCCceecCCccccCc
Q 021573           95 PCPSNGECHQG-----KLECFHGYRKHGKLCVEDG  124 (310)
Q Consensus        95 PCP~nA~C~~g-----~v~C~~Gyvl~~~~Cv~D~  124 (310)
                      -||+||-||..     +-+|--||+..+++|||.|
T Consensus        11 ~~P~NagCfRyldg~EEwrCLL~fKk~~~kCv~~p   45 (45)
T d1ob1c1          11 QCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENP   45 (45)
T ss_dssp             CCCTTEEEECCTTSCCEEEECTTEEEETTEEEECS
T ss_pred             CCCcCcceeEecCCCeeeeeeeeecccCCCcccCC
Confidence            69999999973     3699999999999999975

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.46  E-value=0.014  Score=38.15  Aligned_cols=29  Identities=28%  Similarity=0.770  Sum_probs=25.4

Q ss_pred             cCCCCccccCC--e--eeecCCceecCCccccC
Q 021573           95 PCPSNGECHQG--K--LECFHGYRKHGKLCVED  123 (310)
Q Consensus        95 PCP~nA~C~~g--~--v~C~~Gyvl~~~~Cv~D  123 (310)
                      .|.+||.|.+.  .  -.|.+||.-.+..|++|
T Consensus         8 ~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C~~e   40 (40)
T d1gl4a2           8 QCSVHAECRDYATGFCCRCVANYTGNGRQCVAE   40 (40)
T ss_dssp             GSCTTEEEEECSSCEEEEECTTEEECSSSEEET
T ss_pred             CCCCCCEeecCCCCeEeECCCCCcCCCCEeeCc
Confidence            68999999984  3  49999999999999986

>d1b9wa1 g.3.11.4 (A:1-45) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Merozoite surface protein 1 (MSP-1)
domain: Merozoite surface protein 1 (MSP-1)
species: Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]

Probab=92.66  E-value=0.02  Score=38.30  Aligned_cols=30  Identities=23%  Similarity=0.626  Sum_probs=26.4

Q ss_pred             cCCCCccccC---C--eeeecCCceecCCccccCc
Q 021573           95 PCPSNGECHQ---G--KLECFHGYRKHGKLCVEDG  124 (310)
Q Consensus        95 PCP~nA~C~~---g--~v~C~~Gyvl~~~~Cv~D~  124 (310)
                      -||+||-||.   |  +-+|--||+..+++||+.|
T Consensus        11 ~~P~NAgC~Ry~dg~EEwRClL~fK~~~~~CV~~p   45 (45)
T d1b9wa1          11 NVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAP   45 (45)
T ss_dssp             CCCTTEEEEECTTSCEEEEECTTEEEETTEEEECT
T ss_pred             CCCCCcceeEecCCCeeEEEEeeeeccCCEeccCC
Confidence            6999999986   3  3699999999999999975

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.83  E-value=0.28  Score=31.87  Aligned_cols=26  Identities=35%  Similarity=0.690  Sum_probs=21.3

Q ss_pred             CCCCccccCC--e--eeecCCceecCCccc
Q 021573           96 CPSNGECHQG--K--LECFHGYRKHGKLCV  121 (310)
Q Consensus        96 CP~nA~C~~g--~--v~C~~Gyvl~~~~Cv  121 (310)
                      |+.++.|.+.  .  -.|.+||.+.+..|+
T Consensus        13 ~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~   42 (43)
T d1emoa1          13 VCKHGQCINTDGSYRCECPFGYILAGNECV   42 (43)
T ss_dssp             SCSSSCCCCCSSCCCCCCCTTEEESSSCEE
T ss_pred             CCCCCEeECCCCCeEeECCCCcccCCCccc
Confidence            4568999994  4  399999999998886

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.29  E-value=0.26  Score=31.74  Aligned_cols=28  Identities=36%  Similarity=0.955  Sum_probs=22.9

Q ss_pred             ccCCCCccccCC--e--eeecCCceecCCccccC
Q 021573           94 EPCPSNGECHQG--K--LECFHGYRKHGKLCVED  123 (310)
Q Consensus        94 ePCP~nA~C~~g--~--v~C~~Gyvl~~~~Cv~D  123 (310)
                      .||..+|.|.+.  .  -.|.+||.  ++.|+.|
T Consensus        11 ~pC~n~g~C~n~~g~y~C~C~~G~~--G~~Ce~d   42 (42)
T d2vj3a1          11 NPCEHAGKCINTLGSFECQCLQGYT--GPRCEID   42 (42)
T ss_dssp             CSSSTTCEEEECSSSEEEECCTTEE--STTSCEE
T ss_pred             CCCCCCcEeECCCCCEEeECCCCCc--CCCCcCc
Confidence            399999999985  2  49999995  7788765

>d1wm7a_ g.3.7.2 (A:) Neurotoxin bmp01 {Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: Scorpion toxin-like
family: Short-chain scorpion toxins
domain: Neurotoxin bmp01
species: Chinese scorpion (Buthus martensii karsch) [TaxId: 34649]

Probab=81.17  E-value=0.27  Score=29.44  Aligned_cols=20  Identities=25%  Similarity=0.787  Sum_probs=11.9

Q ss_pred             CCccCCCCccccCCeeeecC
Q 021573           92 SCEPCPSNGECHQGKLECFH  111 (310)
Q Consensus        92 ~CePCP~nA~C~~g~v~C~~  111 (310)
                      .|+-||+|--=.+...+|++
T Consensus         2 ~cedcpehc~tq~arakcdn   21 (29)
T d1wm7a_           2 TCEDCPEHCATQNARAKCDN   21 (29)
T ss_dssp             CGGGSTTTTTTTTCEEECSS
T ss_pred             ccccchHHhhhhhhhhhccC
Confidence            69999998433333344444