Citrus Sinensis ID: 021579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQDQQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVASVFGHDSDEEQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHccHHHHHHHHHcccccccccccccccHHHccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHccccccccccccccHHHHHHHHcccccccccccccccEccEEEEEccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mdygwyngkqglsgrdkqphekeQAYQDSVIEDLAedfrlpihqkpienvdlddveqasldtkltssniGFRLLQKmgwkgkglgkdeqgiiepiksgirdpklgvgkqeeddfFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRemhgtssrddRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQDQqqqdeesgsvsvptapgtttaLANQDQRKALKfgfsskggtsknttgsaakkpKVAVASvfghdsdeeq
Flexible Loop (DISEMBL)
mdygwyngkqglsgrdkqphEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLdtkltssnigfrlLQKMgwkgkglgkdeqgiiepiksgirdpklgvGKQEEddfftaeeniqrrkldievedteenakkrevlaereqkiqtevKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMremhgtssrddrqKREQQRQEREMAKFAQMADAHKQQQEQKQRQQDQQQQDEESGSVSVPTAPGTTTALANQDQRKALKfgfsskggtsknttgsaakkpkvaVASVfghdsdeeq
Low Complexity Region (SEG)
MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDrqkreqqrqereMAKFAQMADAHkqqqeqkqrqqdqqqqdeeSGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGsaakkpkvavasvFGHDSDEEQ
Disordered region (IsUnstruct)
********************************DLAEDFRLPIHQKPIENVDLDDV****LDTKLTSSNIGFRLLQKMGWKGKGLGKD*QGIIE**********************************************************TEVKEIRKVFYCDLCNKQYKLAVEFEAHLSS********************************************************************************************************************************
Disordered Region (DISOPRED)
***********************************************************************RLLQKM*******************SGI***********EDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY********************************************************************************************************************************************
Disordered Region (DISEMBL)
MDYGWYNGKQG***************QDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEM************************************************************TAPGTTTALANQDQRKALKFGFSSK*****************AVASVFGHDSDEEQ
Disordered Region (DISPRO)
*******************HEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKL***VEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMH*******************MAKFAQMADAHKQQQ*************************************KAL****S******************VA*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVASVFGHDSDEEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
A2A6A1	1505	G patch domain-containing	yes	no	0.577	0.118	0.372	7e-31
Q9UKJ3	1502	G patch domain-containing	yes	no	0.577	0.119	0.372	9e-31
A2AKY4	1200	Zinc finger protein 804A	no	no	0.306	0.079	0.305	2e-10
Q7Z570	1209	Zinc finger protein 804A	no	no	0.306	0.078	0.305	3e-10
A4D1E1	1349	Zinc finger protein 804B	no	no	0.254	0.058	0.303	2e-08
Q6DF57	261	Coiled-coil domain-contai	no	no	0.274	0.325	0.451	3e-08
P98175	930	RNA-binding protein 10 OS	no	no	0.212	0.070	0.441	3e-06
Q99KG3	930	RNA-binding protein 10 OS	no	no	0.212	0.070	0.441	3e-06
P70501	852	RNA-binding protein 10 OS	no	no	0.212	0.077	0.441	3e-06
Q6DGZ0	262	Coiled-coil domain-contai	no	no	0.212	0.251	0.376	1e-05

>sp|A2A6A1|GPTC8_MOUSE G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=2 SV=1

 Score =  134 bits (338), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 54  DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED 112
           ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E +
Sbjct: 28  EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query: 113 DFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKL 172
             +  +   +RR L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY+ 
Sbjct: 88  LDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQK 147

Query: 173 AVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQ 232
             EF+ H++SYDH H++R K++++     +   R ++++++QE+ + +  ++A+  KQ +
Sbjct: 148 HQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAE 207

Mus musculus (taxid: 10090)

>sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8 OS=Homo sapiens GN=GPATCH8 PE=1 SV=2

 Score =  134 bits (337), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 118/180 (65%), Gaps = 1/180 (0%)

Query: 54  DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED 112
           ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E +
Sbjct: 28  EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query: 113 DFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKL 172
             +  +   +RR L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY+ 
Sbjct: 88  LDYAEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQK 147

Query: 173 AVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQ 232
             EF+ H++SYDH H++R K++++     +   R ++++++QE+ + +  ++A+  KQ +
Sbjct: 148 HQEFDNHINSYDHAHKQRLKDLKQREFARNVSSRSRKDEKKQEKALRRLHELAEQRKQAE 207

Homo sapiens (taxid: 9606)

>sp|A2AKY4|Z804A_MOUSE Zinc finger protein 804A OS=Mus musculus GN=Znf804a PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 60/95 (63%)

Query: 136 NAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMR 195
           N  K    AE+E  I   +++++  FYC+LC+KQY    EF+ H++SYDH H++R KE++
Sbjct: 32  NGNKTLDYAEKENTIAKALEDLKANFYCELCDKQYYKHQEFDNHINSYDHAHKQRLKELK 91

Query: 196 EMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQ 230
           +     +   + ++++++QE+ + +  ++A+  K+
Sbjct: 92  QREFARNVASKSRKDERKQEKALQRLHKLAELRKE 126

Mus musculus (taxid: 10090)

>sp|Q7Z570|Z804A_HUMAN Zinc finger protein 804A OS=Homo sapiens GN=ZNF804A PE=1 SV=3

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 60/95 (63%)

Query: 136 NAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMR 195
           N  K    AE+E  I   +++++  FYC+LC+KQY    EF+ H++SYDH H++R KE++
Sbjct: 32  NGNKTLDYAEKENTIAKALEDLKANFYCELCDKQYYKHQEFDNHINSYDHAHKQRLKELK 91

Query: 196 EMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQ 230
           +     +   + ++++++QE+ + +  ++A+  K+
Sbjct: 92  QREFARNVASKSRKDERKQEKALQRLHKLAELRKE 126

Homo sapiens (taxid: 9606)

>sp|A4D1E1|Z804B_HUMAN Zinc finger protein 804B OS=Homo sapiens GN=ZNF804B PE=2 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 53/79 (67%)

Query: 154 VKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQR 213
           +++++  FYC+LC+KQY    EF+ H++SYDH H++R KE+++     +   +  +++++
Sbjct: 48  LEDVKANFYCELCDKQYHKHQEFDNHINSYDHAHKQRLKELKQREFARNVASKSWKDEKK 107

Query: 214 QEREMAKFAQMADAHKQQQ 232
           QE+ + +  Q+A+  +Q +
Sbjct: 108 QEKALKRLHQLAELRQQSE 126

Homo sapiens (taxid: 9606)

>sp|Q6DF57|CCD75_XENTR Coiled-coil domain-containing protein 75 OS=Xenopus tropicalis GN=ccdc75 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 8/93 (8%)

Query: 52  LDDVEQASLDTKLTSS----NIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGV 106
           L DVE+   DTKL  +    N GF LLQKMG+K G+ LGK   GI+EPI   I+  + G+
Sbjct: 52  LKDVEKEKRDTKLNEALGNENKGFALLQKMGYKKGQALGKKGDGIVEPIPLNIKTGRSGI 111

Query: 107 GKQEEDDFFTAEENIQ--RRKLDIEVEDTEENA 137
           G  EE     AEEN++  RRK+ +   D E+ A
Sbjct: 112 G-HEEMKKRKAEENLESYRRKIQMRKHDEEQAA 143

Xenopus tropicalis (taxid: 8364)

>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 54  DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED 112
           D EQ + D  L S NIG R+LQ MGWK G GLG+ +QGI+ PI++  R    G+G +   
Sbjct: 847 DFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 905

Query: 113 DFFTAEEN 120
              T+ E+
Sbjct: 906 YGVTSTES 913

May be involved in post-transcriptional processing, most probably in mRNA splicing. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Homo sapiens (taxid: 9606)

>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 54  DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED 112
           D EQ + D  L S NIG R+LQ MGWK G GLG+ +QGI+ PI++  R    G+G +   
Sbjct: 847 DFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 905

Query: 113 DFFTAEEN 120
              T+ E+
Sbjct: 906 YGVTSTES 913

Not known. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Mus musculus (taxid: 10090)

>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 54  DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED 112
           D EQ + D  L S NIG R+LQ MGWK G GLG+ +QGI+ PI++  R    G+G +   
Sbjct: 769 DFEQPTRD-GLGSDNIGSRMLQAMGWKEGSGLGRKKQGIVTPIEAQTRVRGSGLGARGSS 827

Query: 113 DFFTAEEN 120
              T+ E+
Sbjct: 828 YGVTSTES 835

Not known. Binds to RNA homopolymers, with a preference for poly(G) and poly(U) and little for poly(A).

Rattus norvegicus (taxid: 10116)

>sp|Q6DGZ0|CCD75_DANRE Coiled-coil domain-containing protein 75 OS=Danio rerio GN=ccdc75 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 11/77 (14%)

Query: 57  QASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFF 115
           +A+L + + S N GF LLQKMG+K G+GLGK+  G +EP+   I+  + G+G +E     
Sbjct: 61  EAALQSSIGSQNKGFALLQKMGYKAGQGLGKEGAGRVEPVPLNIKTDRGGIGMEE----- 115

Query: 116 TAEENIQRRKLDIEVED 132
                +++RK D E+++
Sbjct: 116 -----VKKRKADEELQN 127

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
296089852	313	unnamed protein product [Vitis vinifera]	0.964	0.955	0.758	1e-135
359487591	296	PREDICTED: G patch domain-containing pro	0.954	1.0	0.786	1e-135
356572888	304	PREDICTED: G patch domain-containing pro	0.967	0.986	0.744	1e-128
356505733	304	PREDICTED: G patch domain-containing pro	0.967	0.986	0.728	1e-127
224124314	271	predicted protein [Populus trichocarpa]	0.874	1.0	0.819	1e-125
224122816	295	predicted protein [Populus trichocarpa]	0.951	1.0	0.774	1e-124
388518483	304	unknown [Lotus japonicus]	0.967	0.986	0.722	1e-123
449435580	299	PREDICTED: G patch domain-containing pro	0.954	0.989	0.721	1e-120
449510822	299	PREDICTED: LOW QUALITY PROTEIN: G patch	0.954	0.989	0.717	1e-120
255543038	300	nucleic acid binding protein, putative [	0.967	1.0	0.777	1e-119

>gi|296089852|emb|CBI39671.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/323 (75%), Positives = 277/323 (85%), Gaps = 24/323 (7%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           MD  WY+G+Q  S RD +  E+E+AY+DS++EDLAEDFRLPI+ KP ENVDLD+VEQASL
Sbjct: 1   MDRRWYSGRQETSSRDNRQREREEAYKDSLVEDLAEDFRLPINHKPTENVDLDNVEQASL 60

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DT+LTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDP+LGVGKQEEDDFFTAEEN
Sbjct: 61  DTQLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEEN 120

Query: 121 IQRRKLDIEVEDTEENAKKRE--------------VLAEREQKIQTEVKEIRKVFYCDLC 166
           IQR+KLD+E+E+TEE+AKKRE              V+AEREQKIQTEVKEIRKVFYC+LC
Sbjct: 121 IQRKKLDVELEETEEHAKKREKAAYSIYVCLLTGMVVAEREQKIQTEVKEIRKVFYCELC 180

Query: 167 NKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMAD 226
           NKQYKLA+EFE HLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFA MAD
Sbjct: 181 NKQYKLAMEFEVHLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFALMAD 240

Query: 227 AHKQQQEQKQRQQDQQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNT 286
           A KQQQ+Q++          ESG+ +V T   + T LA+Q+QRKALKFGFSSKGG SKN+
Sbjct: 241 ARKQQQQQEE----------ESGNTAVSTTLRSATPLADQEQRKALKFGFSSKGGMSKNS 290

Query: 287 TGSAAKKPKVAVASVFGHDSDEE 309
           +GSAAKKPKV+VASVF +DSDEE
Sbjct: 291 SGSAAKKPKVSVASVFSNDSDEE 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487591|ref|XP_003633617.1| PREDICTED: G patch domain-containing protein 8-like [Vitis vinifera]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/309 (78%), Positives = 274/309 (88%), Gaps = 13/309 (4%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           MD  WY+G+Q  S RD +  E+E+   DS++EDLAEDFRLPI+ KP ENVDLD+VEQASL
Sbjct: 1   MDRRWYSGRQETSSRDNRQREREE---DSLVEDLAEDFRLPINHKPTENVDLDNVEQASL 57

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DT+LTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDP+LGVGKQEEDDFFTAEEN
Sbjct: 58  DTQLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEEN 117

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQR+KLD+E+E+TEE+AKKREV+AEREQKIQTEVKEIRKVFYC+LCNKQYKLA+EFE HL
Sbjct: 118 IQRKKLDVELEETEEHAKKREVVAEREQKIQTEVKEIRKVFYCELCNKQYKLAMEFEVHL 177

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFA MADA KQQQ+Q++    
Sbjct: 178 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFALMADARKQQQQQEE---- 233

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVAS 300
                 ESG+ +V T   + T LA+Q+QRKALKFGFSSKGG SKN++GSAAKKPKV+VAS
Sbjct: 234 ------ESGNTAVSTTLRSATPLADQEQRKALKFGFSSKGGMSKNSSGSAAKKPKVSVAS 287

Query: 301 VFGHDSDEE 309
           VF +DSDEE
Sbjct: 288 VFSNDSDEE 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572888|ref|XP_003554597.1| PREDICTED: G patch domain-containing protein 8-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/313 (74%), Positives = 267/313 (85%), Gaps = 13/313 (4%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           M+Y W NG+Q   GRD++  ++EQAYQDS+IEDL+EDF LPI+ +P ENVDLD+VEQASL
Sbjct: 1   MEYRWTNGRQETGGRDRRQSKREQAYQDSLIEDLSEDFSLPINHRPTENVDLDNVEQASL 60

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DT++TSSNIGF+LLQKMGWKGKGLGKDEQGIIEPIKSGIRDP+LGVGKQEEDDFFTAEEN
Sbjct: 61  DTQITSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGVGKQEEDDFFTAEEN 120

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQR+KLD+E+E+TEE+ KKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLA+EFEAHL
Sbjct: 121 IQRKKLDVELEETEEHVKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHL 180

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFK+M+EMHG SSRDDRQKREQ RQEREMAKFAQ+ADA KQQQ Q Q    
Sbjct: 181 SSYDHNHRKRFKQMKEMHGGSSRDDRQKREQLRQEREMAKFAQIADAQKQQQLQLQ---- 236

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGS----AAKKPKV 296
                +ESGS +VP+   T TAL +Q+QR  LKFGFSSKG  SK T G+     AKK  V
Sbjct: 237 -----QESGSATVPSESITATALTDQEQRNTLKFGFSSKGSASKITFGAKKQNVAKKQNV 291

Query: 297 AVASVFGHDSDEE 309
            ++S+F +DSDEE
Sbjct: 292 PISSIFSNDSDEE 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505733|ref|XP_003521644.1| PREDICTED: G patch domain-containing protein 8-like [Glycine max]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/313 (72%), Positives = 269/313 (85%), Gaps = 13/313 (4%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           M+Y   +G+Q   GRD++  ++EQAYQDS+IEDL++DFRLPI+ +P ENVDLD+VEQASL
Sbjct: 1   MEYRRTSGRQETGGRDRRQSKREQAYQDSLIEDLSQDFRLPINHRPTENVDLDNVEQASL 60

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DT++TSSNIGF+LLQKMGWKGKGLGKDEQGIIEPIKSGIRDP+LG+GKQEEDDFFTAEEN
Sbjct: 61  DTQITSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPRLGIGKQEEDDFFTAEEN 120

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQR+KLD+E+E+TEE+ KKREVLAEREQKIQTEV+EIRKVFYCDLCNKQYKLA+EFEAHL
Sbjct: 121 IQRKKLDVELEETEEHVKKREVLAEREQKIQTEVQEIRKVFYCDLCNKQYKLAMEFEAHL 180

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFK+M+EMHG+SSRDDRQKREQQRQEREMAKFAQ+ADA KQQ+ Q Q    
Sbjct: 181 SSYDHNHRKRFKQMKEMHGSSSRDDRQKREQQRQEREMAKFAQIADAQKQQRLQLQ---- 236

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGS----AAKKPKV 296
                +ESGS +VP+   T TAL +Q+QR  LKFGFSSKG  SK T G+     AKK  V
Sbjct: 237 -----QESGSATVPSESKTATALTDQEQRNTLKFGFSSKGSGSKITFGAKKQNVAKKQNV 291

Query: 297 AVASVFGHDSDEE 309
            ++S+F +DSDE+
Sbjct: 292 PISSIFSNDSDED 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124314|ref|XP_002329992.1| predicted protein [Populus trichocarpa] gi|222871417|gb|EEF08548.1| predicted protein [Populus trichocarpa]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/282 (81%), Positives = 250/282 (88%), Gaps = 11/282 (3%)

Query: 28  DSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWKGKGLGKD 87
           DS+IED  EDFRLP   +P ENVDLD+VEQASLDTKLT+SNIGFRLLQKMGWKGKGLGKD
Sbjct: 1   DSLIEDFTEDFRLPKDHRPTENVDLDNVEQASLDTKLTASNIGFRLLQKMGWKGKGLGKD 60

Query: 88  EQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAERE 147
           EQGIIEPIKSGIRDPKLG+GKQEEDDFFTAEENIQRRKLDIEVE+TEE+ KKREVLAERE
Sbjct: 61  EQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRRKLDIEVEETEEHTKKREVLAERE 120

Query: 148 QKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRQ 207
           QKIQTEVKEIRKVF+CDLCNKQYKLA+EFEAHLSSYDHNHRKRFKEMREMHGTSSRDDR+
Sbjct: 121 QKIQTEVKEIRKVFFCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRR 180

Query: 208 KREQQRQEREMAKFAQMADAHKQQQEQKQRQQDQQQQDEESGSVSVPTAPGTTTALANQD 267
           KRE QRQEREMAKFAQMADAHKQ+Q+Q           EES S  V T+  + TAL +QD
Sbjct: 181 KRELQRQEREMAKFAQMADAHKQEQQQ-----------EESASAQVSTSLRSGTALVDQD 229

Query: 268 QRKALKFGFSSKGGTSKNTTGSAAKKPKVAVASVFGHDSDEE 309
           QR+ALKFGFSSKGG SKN++  AAKKPK AVASVF +DSDEE
Sbjct: 230 QRRALKFGFSSKGGLSKNSSAKAAKKPKSAVASVFSNDSDEE 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122816|ref|XP_002318923.1| predicted protein [Populus trichocarpa] gi|222857299|gb|EEE94846.1| predicted protein [Populus trichocarpa]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/310 (77%), Positives = 267/310 (86%), Gaps = 15/310 (4%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           MD  W+  KQ  S R++Q  ++EQ   DS+IED  EDFRLP + +P ENVDLD+VEQASL
Sbjct: 1   MDCRWFIDKQETSTRNEQQLDREQ---DSLIEDFTEDFRLPKNHRPTENVDLDNVEQASL 57

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DTKLT+SN+GFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLG+GKQEEDDFFTAEEN
Sbjct: 58  DTKLTASNVGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEEN 117

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQRRKLDIEVE+TEE+ KKREVLAEREQKIQTEVKEIRKVF+CDLCNKQYKLA+EFEAHL
Sbjct: 118 IQRRKLDIEVEETEEDTKKREVLAEREQKIQTEVKEIRKVFFCDLCNKQYKLAMEFEAHL 177

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFKEMREMHGTSSRDDRQKRE QRQEREMAKFAQMADA KQ+Q+ +Q+++ 
Sbjct: 178 SSYDHNHRKRFKEMREMHGTSSRDDRQKRELQRQEREMAKFAQMADARKQEQQLQQQEE- 236

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVAS 300
                  SGS    +A    TAL +QDQRKALKFGFSSKGG SKN++  AAKKPK AVAS
Sbjct: 237 -------SGSAQQKSA----TALVDQDQRKALKFGFSSKGGFSKNSSAKAAKKPKSAVAS 285

Query: 301 VFGHDSDEEQ 310
           VF +DSDEEQ
Sbjct: 286 VFSNDSDEEQ 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518483|gb|AFK47303.1| unknown [Lotus japonicus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/313 (72%), Positives = 261/313 (83%), Gaps = 13/313 (4%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           MDY   +G+Q   GR ++  +KE+A+QDS+I DLAEDFRLPI+ +P ENVDL++VEQASL
Sbjct: 1   MDYRRSSGRQESGGRGRRQFKKEEAHQDSLIGDLAEDFRLPINHRPTENVDLENVEQASL 60

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DT+LTSSNIGF+LLQKMGWKGKGLGKDEQGIIEPIKSG+RDP+LG+GKQEEDDFFTAEEN
Sbjct: 61  DTQLTSSNIGFKLLQKMGWKGKGLGKDEQGIIEPIKSGMRDPRLGLGKQEEDDFFTAEEN 120

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQR+KLD E+E+TEEN +KREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLA+EFEAHL
Sbjct: 121 IQRKKLDAELEETEENVRKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHL 180

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFK+M+EMHG SSRDDRQKREQQRQERE+AKFAQ+ADA KQQ+ Q      
Sbjct: 181 SSYDHNHRKRFKQMKEMHGGSSRDDRQKREQQRQEREIAKFAQIADAQKQQRLQLL---- 236

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGS----AAKKPKV 296
                +ESGS  V +   T T L +Q+QR ALKFGFSSKG  SKN  G      AKK  +
Sbjct: 237 -----QESGSEPVSSETRTATPLTDQEQRNALKFGFSSKGSASKNVIGPKRQMVAKKQNI 291

Query: 297 AVASVFGHDSDEE 309
            V+S+F +DSDEE
Sbjct: 292 PVSSIFNNDSDEE 304

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435580|ref|XP_004135573.1| PREDICTED: G patch domain-containing protein 8-like [Cucumis sativus]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/312 (72%), Positives = 258/312 (82%), Gaps = 16/312 (5%)

Query: 1   MDYGWYNGKQGLSGR--DKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQA 58
           MDY      +G S R     P +     Q+S+ +D  +DFRLPI+ KP ENVDLD+VEQA
Sbjct: 1   MDY------RGFSSRLETSNPSKGYAREQESLGDDFIDDFRLPINHKPTENVDLDNVEQA 54

Query: 59  SLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAE 118
           SLDT+LTSSN+G+RLLQKMGWKGKGLGK+EQGIIEPIKSG+RDPKLG+GKQEEDDFFTAE
Sbjct: 55  SLDTQLTSSNVGYRLLQKMGWKGKGLGKNEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAE 114

Query: 119 ENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEA 178
           ENIQR+KLD+EVE+TEE+AKKREVLAERE+KIQTEVKEIRKVFYCDLCNKQYKLA+EFEA
Sbjct: 115 ENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEA 174

Query: 179 HLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQ 238
           HLSSYDHNHRKRFKEMREMHG+SSRDDR KREQQR+EREMAKFAQ+ADA       +++Q
Sbjct: 175 HLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADA-------RKKQ 227

Query: 239 QDQQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVA- 297
           Q   +Q   +    V T     T++A+QDQRK LKFGFSSKGGTSKN  G A KKPKVA 
Sbjct: 228 QQLLEQQARAAEAPVSTELRNATSVADQDQRKTLKFGFSSKGGTSKNIFGGAKKKPKVAP 287

Query: 298 VASVFGHDSDEE 309
           VASVFG+DSD+E
Sbjct: 288 VASVFGNDSDDE 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449510822|ref|XP_004163770.1| PREDICTED: LOW QUALITY PROTEIN: G patch domain-containing protein 8-like [Cucumis sativus]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/312 (71%), Positives = 257/312 (82%), Gaps = 16/312 (5%)

Query: 1   MDYGWYNGKQGLSGR--DKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQA 58
           MDY      +G S R     P +     Q+S+ +D  +DFRLPI+ KP ENVDLD+VEQA
Sbjct: 1   MDY------RGFSSRLETSNPSKGYAREQESLGDDFIDDFRLPINHKPTENVDLDNVEQA 54

Query: 59  SLDTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAE 118
           SLDT+LTSSN+G+RLLQKMGWKGKGLGK+EQGIIEPIKSG+RDPKLG+GKQEED FFTAE
Sbjct: 55  SLDTQLTSSNVGYRLLQKMGWKGKGLGKNEQGIIEPIKSGMRDPKLGIGKQEEDXFFTAE 114

Query: 119 ENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEA 178
           ENIQR+KLD+EVE+TEE+AKKREVLAERE+KIQTEVKEIRKVFYCDLCNKQYKLA+EFEA
Sbjct: 115 ENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEA 174

Query: 179 HLSSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQ 238
           HLSSYDHNHRKRFKEMREMHG+SSRDDR KREQQR+EREMAKFAQ+ADA       +++Q
Sbjct: 175 HLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADA-------RKKQ 227

Query: 239 QDQQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVA- 297
           Q   +Q   +    V T     T++A+QDQRK LKFGFSSKGGTSKN  G A KKPKVA 
Sbjct: 228 QQLLEQQARAAEAPVSTELRNATSVADQDQRKTLKFGFSSKGGTSKNIFGGAKKKPKVAP 287

Query: 298 VASVFGHDSDEE 309
           VASVFG+DSD+E
Sbjct: 288 VASVFGNDSDDE 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543038|ref|XP_002512582.1| nucleic acid binding protein, putative [Ricinus communis] gi|223548543|gb|EEF50034.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/310 (77%), Positives = 267/310 (86%), Gaps = 10/310 (3%)

Query: 1   MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
           MD  WY  KQ     D+   ++ Q   DS+IEDLAEDFRLPI+ +P ENVDL++VEQASL
Sbjct: 1   MDCRWYGSKQETVSHDESQQDRNQ---DSLIEDLAEDFRLPINHRPTENVDLENVEQASL 57

Query: 61  DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
           DTKLT++NIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRD KLG+GKQEEDDFFTAEEN
Sbjct: 58  DTKLTATNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDRKLGIGKQEEDDFFTAEEN 117

Query: 121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
           IQR+KLDIE+E+TEE+AKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLA+EFE HL
Sbjct: 118 IQRKKLDIEIEETEEHAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAMEFEVHL 177

Query: 181 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQEQKQRQQD 240
           SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMA+FAQMADA KQQQ+Q+     
Sbjct: 178 SSYDHNHRKRFKEMREMHGTSSRDDRQKREQQRQEREMARFAQMADARKQQQQQQ----- 232

Query: 241 QQQQDEESGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVAS 300
           QQQQ EES  VS   +  TTTAL  QD+RK LKFGFSSKGGTSK ++ SA KKPK  VAS
Sbjct: 233 QQQQVEESAQVS--NSVRTTTALTEQDKRKVLKFGFSSKGGTSKKSSSSAVKKPKATVAS 290

Query: 301 VFGHDSDEEQ 310
           VF ++SDEE+
Sbjct: 291 VFSNNSDEEE 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2146839	301	AT5G26610 [Arabidopsis thalian	0.967	0.996	0.596	1.1e-87
ZFIN|ZDB-GENE-030131-6966	1498	gpatch8 "G patch domain contai	0.512	0.106	0.422	1.9e-29
MGI|MGI:1918667	1505	Gpatch8 "G patch domain contai	0.454	0.093	0.445	8.3e-29
UNIPROTKB|F1M1F0	635	LOC688211 "Protein LOC688211"	0.454	0.222	0.445	2e-28
RGD|1596463	1494	Gpatch8 "G patch domain contai	0.454	0.094	0.445	1.1e-27
UNIPROTKB|E2RIL0	1502	GPATCH8 "Uncharacterized prote	0.454	0.093	0.445	1.1e-27
UNIPROTKB|J9P741	1502	GPATCH8 "Uncharacterized prote	0.454	0.093	0.445	1.1e-27
UNIPROTKB|Q9UKJ3	1502	GPATCH8 "G patch domain-contai	0.454	0.093	0.445	1.1e-27
UNIPROTKB|E1BC37	1509	GPATCH8 "Uncharacterized prote	0.454	0.093	0.445	1.1e-27
UNIPROTKB|K7EKU0	221	GPATCH8 "G patch domain-contai	0.409	0.574	0.439	2.2e-25

TAIR|locus:2146839 AT5G26610 [Arabidopsis thaliana (taxid:3702)]

 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 185/310 (59%), Positives = 214/310 (69%)

Query:     1 MDYGWYNGKQGLSGRDKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASL 60
             MD      K   S R+K+ +EK+Q  Q+S IE LAE+FRLPI  +  ENVDL+DVEQASL
Sbjct:     1 MDISRRESKTEASSREKRIYEKDQMNQESFIEGLAEEFRLPITHRVTENVDLEDVEQASL 60

Query:    61 DTKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEEN 120
             D K++SSN+GFRLLQKMGWKGKGLGK EQGI EPIKSGIRD +LG+GKQEEDD+FTAEEN
Sbjct:    61 DVKISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSGIRDRRLGLGKQEEDDYFTAEEN 120

Query:   121 IQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHL 180
             IQR+KLDIE+E+TEE AKKREVLAEREQKIQ++VKEIRKVFYC+LC+KQY+  +EFE HL
Sbjct:   121 IQRKKLDIEIEETEEIAKKREVLAEREQKIQSDVKEIRKVFYCELCSKQYRTVMEFEGHL 180

Query:   181 SSYDHNHRKRFKEMREMHGTSSRDDXXXXXXXXXXXXMAKFAQMADAHXXXXXXXXXXXX 240
             SSYDHNH+KRFKEM+EMHG S RD+            M K   MADA             
Sbjct:   181 SSYDHNHKKRFKEMKEMHGASGRDERKKREQQRQEREMTK---MADARKQHQMQQSQQEV 237

Query:   241 XXXXXXXSGSVSVPTAPGTTTALANQDQRKALKFGFSSKGGT-SKNTTGXXXXXXXXXXX 299
                       VS P A  T   LA QDQRK LKFGFSSK G  SK+              
Sbjct:   238 PENV-----PVSAP-AKTTVAPLAVQDQRKTLKFGFSSKSGIISKSQPTSSIKKPKVAIA 291

Query:   300 XXFGHDSDEE 309
               FG+DSDE+
Sbjct:   292 SVFGNDSDED 301

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6966 gpatch8 "G patch domain containing 8" [Danio rerio (taxid:7955)]

 Score = 333 (122.3 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 68/161 (42%), Positives = 105/161 (65%)

Query:    37 DFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPI 95
             DF+   H    E   L+ +EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +P+
Sbjct:    13 DFQGGNHFDQYEEGQLE-LEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKTMQGRTDPV 71

Query:    96 KSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVK 155
                ++   +G+G+ E +  +  +   +RR L++E EDTEE  +K +  AE+E+ I   ++
Sbjct:    72 PIVLKYDVMGMGRMEMELDYAEDATEKRRVLEVEKEDTEELRQKYKDFAEKEKAIAKALE 131

Query:   156 EIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRE 196
             ++R  FYC+LC+KQY+   EF+ H++SYDH H++R KE+++
Sbjct:   132 DLRANFYCELCDKQYQKHQEFDNHINSYDHAHKQRLKELKQ 172

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1918667 Gpatch8 "G patch domain containing 8" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 8.3e-29, Sum P(2) = 8.3e-29
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    28 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    88 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 145

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   146 QKHQEFDNHINSYDHAHKQRLKDLKQ 171

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1M1F0 LOC688211 "Protein LOC688211" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    29 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 88

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    89 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 146

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   147 QKHQEFDNHINSYDHAHKQRLKDLKQ 172

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1596463 Gpatch8 "G patch domain containing 8" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    15 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 74

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    75 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 132

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   133 QKHQEFDNHINSYDHAHKQRLKDLKQ 158

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RIL0 GPATCH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    28 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    88 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 145

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   146 QKHQEFDNHINSYDHAHKQRLKDLKQ 171

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P741 GPATCH8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    28 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    88 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 145

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   146 QKHQEFDNHINSYDHAHKQRLKDLKQ 171

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q9UKJ3 GPATCH8 "G patch domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    28 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    88 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 145

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   146 QKHQEFDNHINSYDHAHKQRLKDLKQ 171

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BC37 GPATCH8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 65/146 (44%), Positives = 102/146 (69%)

Query:    54 DVEQASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-E 111
             ++EQASLD  + S NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E
Sbjct:    28 EIEQASLDKPIESDNIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEME 87

Query:   112 DDFFTAEENIQRRK-LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQY 170
              D+  AE+  +RR+ L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY
Sbjct:    88 LDY--AEDATERRRVLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQY 145

Query:   171 KLAVEFEAHLSSYDHNHRKRFKEMRE 196
             +   EF+ H++SYDH H++R K++++
Sbjct:   146 QKHQEFDNHINSYDHAHKQRLKDLKQ 171

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7EKU0 GPATCH8 "G patch domain-containing protein 8" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 58/132 (43%), Positives = 92/132 (69%)

Query:    68 NIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE-EDDFFTAEENIQRRK 125
             NIG RLLQK GWK G+GLGK  QG  +PI   ++   +G+G+ E E D+  AE+  +RR+
Sbjct:    17 NIGHRLLQKHGWKLGQGLGKSLQGRTDPIPIVVKYDVMGMGRMEMELDY--AEDATERRR 74

Query:   126 -LDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYD 184
              L++E EDTEE  +K +   ++E+ I   ++++R  FYC+LC+KQY+   EF+ H++SYD
Sbjct:    75 VLEVEKEDTEELRQKYKDYVDKEKAIAKALEDLRANFYCELCDKQYQKHQEFDNHINSYD 134

Query:   185 HNHRKRFKEMRE 196
             H H++R K++++
Sbjct:   135 HAHKQRLKDLKQ 146

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
smart00443	47	smart00443, G_patch, glycine rich nucleic binding	9e-16
pfam01585	45	pfam01585, G-patch, G-patch domain	3e-15
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	2e-04
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	0.004

>gnl|CDD|197727 smart00443, G_patch, glycine rich nucleic binding domain

 Score = 69.9 bits (172), Expect = 9e-16
 Identities = 26/46 (56%), Positives = 38/46 (82%), Gaps = 1/46 (2%)

Query: 64  LTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGK 108
           +++SNIG +LL+KMGWK G+GLGK+EQGI+EPI + I+  + G+G 
Sbjct: 1   ISTSNIGAKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins. Length = 47

>gnl|CDD|144978 pfam01585, G-patch, G-patch domain

 Score = 67.9 bits (167), Expect = 3e-15
 Identities = 29/42 (69%), Positives = 36/42 (85%), Gaps = 1/42 (2%)

Query: 67  SNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVG 107
           SNIGF+LLQKMGWK G+GLGK+EQGI EPI++ IR  + G+G
Sbjct: 2   SNIGFKLLQKMGWKPGQGLGKNEQGITEPIEAKIRPDRKGLG 43

This domain is found in a number of RNA binding proteins, and is also found in proteins that contain RNA binding domains. This suggests that this domain may have an RNA binding function. This domain has seven highly conserved glycines. Length = 45

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 161 FYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEM 194
           FYC LCN  +   +  EAHL      H+K  K+ 
Sbjct: 4   FYCKLCNVTFTDEISVEAHLKG--KKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 206 RQKR-EQQRQEREMAKFAQMADAHKQQ-----QEQKQRQQDQQQQDEESGSVSVPTAPGT 259
           RQ R E+++  RE A+  + A+A   +          R + ++    +   +     P  
Sbjct: 458 RQARLEREKAARE-ARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDN 516

Query: 260 TTALANQDQRKALKFGFSSKGGTSKNTTGSAAKKPKVAVA 299
           +  +A ++ RKA      ++    +    +  KK  VA A
Sbjct: 517 SAVIAAREARKAQA---RARQAEKQAAAAADPKKAAVAAA 553

Length = 695

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
PF01585	45	G-patch: G-patch domain; InterPro: IPR000467 The D	99.43
smart00443	47	G_patch glycine rich nucleic binding domain. A pre	99.3
KOG2809	326	consensus Telomerase elongation inhibitor/RNA matu	99.09
KOG0965	988	consensus Predicted RNA-binding protein, contains	98.82
KOG2384	223	consensus Major histocompatibility complex protein	98.7
KOG2185	486	consensus Predicted RNA-processing protein, contai	98.7
PF12656	77	G-patch_2: DExH-box splicing factor binding site	98.69
KOG1994	268	consensus Predicted RNA binding protein, contains	98.65
KOG2184	767	consensus Tuftelin-interacting protein TIP39, cont	98.55
KOG0154	573	consensus RNA-binding protein RBM5 and related pro	98.5
KOG3673	845	consensus FtsJ-like RNA methyltransferase [RNA pro	98.05
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.79
KOG4368	757	consensus Predicted RNA binding protein, contains	97.74
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.71
KOG1996	378	consensus mRNA splicing factor [RNA processing and	97.67
KOG4315	455	consensus G-patch nucleic acid binding protein [Ge	97.43
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.3
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.17
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.38
KOG2138	883	consensus Predicted RNA binding protein, contains	93.21
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.07
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	91.39
KOG1994	268	consensus Predicted RNA binding protein, contains	91.28
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	91.25
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	90.22
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	89.35
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	89.16
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	87.76
PF15473	150	PCNP: PEST, proteolytic signal-containing nuclear	86.35
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	85.16
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	84.19
PLN02748	468	tRNA dimethylallyltransferase	82.84
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	82.41
KOG2384	223	consensus Major histocompatibility complex protein	80.68
smart00355	26	ZnF_C2H2 zinc finger.	80.25
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	80.02

>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function

Probab=99.43  E-value=1.4e-13  Score=97.76  Aligned_cols=44  Identities=52%  Similarity=1.050  Sum_probs=42.0

Q ss_pred             CCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCC
Q 021579           66 SSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQ  109 (310)
Q Consensus        66 ~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~  109 (310)
                      ++++|++||.+|||+ |+|||++.+||++||.+..+.++.|||+.
T Consensus         1 t~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~~   45 (45)
T PF01585_consen    1 TSSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGAE   45 (45)
T ss_pred             CCcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccCC
Confidence            479999999999999 99999999999999999999999999973

This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular

>smart00443 G_patch glycine rich nucleic binding domain

Probab=99.30  E-value=2.5e-12  Score=91.28  Aligned_cols=45  Identities=58%  Similarity=1.170  Sum_probs=42.7

Q ss_pred             CCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCC
Q 021579           65 TSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQ  109 (310)
Q Consensus        65 ~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~  109 (310)
                      +.+++|++||.+|||+ |.|||++++||++||.+..+.++.|||+.
T Consensus         2 ~~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~~   47 (47)
T smart00443        2 STSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGAE   47 (47)
T ss_pred             CcccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCCC
Confidence            5689999999999999 99999999999999999999999999973

A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.

>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=8.7e-11  Score=113.52  Aligned_cols=68  Identities=38%  Similarity=0.722  Sum_probs=58.2

Q ss_pred             ccCCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCcc--chhhh--HHHHhhhhcchh
Q 021579           62 TKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED--DFFTA--EENIQRRKLDIE  129 (310)
Q Consensus        62 ~~i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~d--~~~~~--~~~~~rKkLe~E  129 (310)
                      ..++.+.+|++||.+|||. |.|||++.||++.||.+.++.+.+|||+..+.  +||.+  ..|.....|+..
T Consensus        21 w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~ned~W~~h~d~Fn~lla~Ln~~   93 (326)
T KOG2809|consen   21 WSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKNNEDQWIAHQDDFNALLAKLNKQ   93 (326)
T ss_pred             hcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCccccccccchhhcccHHHHHHHhhhh
Confidence            4568899999999999999 99999999999999999999999999999854  67664  456666666654

>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]

Probab=98.82  E-value=3.6e-09  Score=110.94  Aligned_cols=50  Identities=48%  Similarity=0.873  Sum_probs=45.2

Q ss_pred             ccCCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeee-ecCCCccccCCCc
Q 021579           62 TKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSG-IRDPKLGVGKQEE  111 (310)
Q Consensus        62 ~~i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~-~k~~~~GLGa~~~  111 (310)
                      ..|...||||+||+||||+ |.|||-.++||.+||.+. +..++.|+|...+
T Consensus       901 ~KLt~dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s~p  952 (988)
T KOG0965|consen  901 QKLTDDNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGSQP  952 (988)
T ss_pred             hhccccchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccCCc
Confidence            4688999999999999999 999999999999999776 5778899998875

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.70  E-value=1.4e-08  Score=93.06  Aligned_cols=56  Identities=27%  Similarity=0.673  Sum_probs=50.0

Q ss_pred             ccCCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCccchhhh
Q 021579           62 TKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTA  117 (310)
Q Consensus        62 ~~i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~d~~~~~  117 (310)
                      -.|+++|+|++||.+.||. +.|||.+++|+..||.+.++.++.|||+...-+..+.
T Consensus       123 ~~i~pks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~~~~rVth  179 (223)
T KOG2384|consen  123 HLIKPKSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEIDQPRVTH  179 (223)
T ss_pred             CcCCCCCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhhccccccc
Confidence            3478999999999999999 9999999999999999999999999999876444444

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=98.70  E-value=2.3e-08  Score=99.32  Aligned_cols=92  Identities=25%  Similarity=0.397  Sum_probs=63.4

Q ss_pred             CCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCccchhhhHHHHhhhhcchhhhhhHHHHHHHHHH
Q 021579           65 TSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDFFTAEENIQRRKLDIEVEDTEENAKKREVL  143 (310)
Q Consensus        65 ~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~d~~~~~~~~~~rKkLe~E~EEtee~kRKRe~~  143 (310)
                      .+-+||.+||.||||. |.|||+.++||++||.+.|-+.+..|..         .-..++++..     ....+||+-..
T Consensus       295 hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~grSLDe---------cme~kqk~~r-----~r~gkrk~~rk  360 (486)
T KOG2185|consen  295 HTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAGRSLDE---------CMEEKQKKKR-----SRGGKRKRGRK  360 (486)
T ss_pred             ccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCCCCHHH---------HHHHHHHhhc-----cccccccchhh
Confidence            4568999999999999 9999999999999999999988866652         1112222211     33344554444


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 021579          144 AEREQKIQTEVKEIRKVFYCDLCNKQYKL  172 (310)
Q Consensus       144 akREqKIq~ElkeirkvFyC~lCnkqy~~  172 (310)
                      -++..|...-.+.-.-||.  |+|.++..
T Consensus       361 rk~~aKa~~ree~r~dvF~--fiNekl~g  387 (486)
T KOG2185|consen  361 RKEAAKAAKREEERKDVFS--FINEKLFG  387 (486)
T ss_pred             hhhhccccCCccccccHHH--HHHHHhcc
Confidence            4444445444444444898  99988776

>PF12656 G-patch_2: DExH-box splicing factor binding site

Probab=98.69  E-value=1.2e-08  Score=80.47  Aligned_cols=49  Identities=33%  Similarity=0.728  Sum_probs=45.7

Q ss_pred             cCCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCc
Q 021579           63 KLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEE  111 (310)
Q Consensus        63 ~i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~  111 (310)
                      .++...+|..||.-|||+ |.|+|++.++.+.||....+..++|||+...
T Consensus        26 ~vPVe~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~~   75 (77)
T PF12656_consen   26 AVPVEEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKPA   75 (77)
T ss_pred             hCCHHHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCCC
Confidence            467789999999999999 9999999999999999999999999999764

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]

Probab=98.65  E-value=2.9e-08  Score=92.55  Aligned_cols=54  Identities=30%  Similarity=0.519  Sum_probs=49.5

Q ss_pred             hccccccCCCCcHHHHHHHhcCCC-CCCCCCCCCC---cccceeeeecCCCccccCCC
Q 021579           57 QASLDTKLTSSNIGFRLLQKMGWK-GKGLGKDEQG---IIEPIKSGIRDPKLGVGKQE  110 (310)
Q Consensus        57 ~as~~~~i~~sniG~kML~KMGWk-G~GLGk~~qG---i~ePI~~~~k~~~~GLGa~~  110 (310)
                      .-.+..+|..+++||.||.+|||+ |.-||++..+   |++||.+-++..+.|||...
T Consensus        71 a~~~~~~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed  128 (268)
T KOG1994|consen   71 ANTKRRGIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDED  128 (268)
T ss_pred             hhhccccccccCcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCccc
Confidence            345567888999999999999999 9999999999   99999999999999999875

>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]

Probab=98.55  E-value=3.3e-08  Score=104.35  Aligned_cols=48  Identities=46%  Similarity=0.794  Sum_probs=45.2

Q ss_pred             CCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCc
Q 021579           64 LTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEE  111 (310)
Q Consensus        64 i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~  111 (310)
                      -...+||.+||.+|||+ |.|||+++|||++||++++++.+.|||+...
T Consensus       113 ~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~  161 (767)
T KOG2184|consen  113 KGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGF  161 (767)
T ss_pred             hcccchhHHHHHHcCCccccccCccccccccHHhcccCccCcccccccc
Confidence            36789999999999999 9999999999999999999999999999864

>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]

Probab=98.50  E-value=1.2e-07  Score=97.03  Aligned_cols=90  Identities=37%  Similarity=0.573  Sum_probs=71.5

Q ss_pred             CCcccccccchhhhhhhhhcCCCCCCCCCCCCCc--c----hhh-------hccccccCCCCcHHHHHHHhcCCC-CCCC
Q 021579           19 PHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDL--D----DVE-------QASLDTKLTSSNIGFRLLQKMGWK-GKGL   84 (310)
Q Consensus        19 ~~~~~~~YRDRA~ER~re~fg~P~~p~p~~~~~~--e----~~e-------~as~~~~i~~sniG~kML~KMGWk-G~GL   84 (310)
                      .+.....|+|||.++ +..+|.+..+.|......  +    .++       .......|+.+|+|.+||.+|||. |.||
T Consensus       452 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~~~~~l~~~gw~~g~Gl  530 (573)
T KOG0154|consen  452 SAEGPLAYRDRAKER-RKSMGIVEGRGPGRSKPDSFEPISVLLESRQKSSRGATEEPPIDTSNVGNRMLQSMGWKEGSGL  530 (573)
T ss_pred             ccccccccchHHHhH-HHHhcCCCCCCCCcccCCCcccceeeccccccchhhccccccCCCCccchhhhhccCccccccc
Confidence            345568899999999 999999988765444221  0    011       111234578999999999999999 9999


Q ss_pred             CCCCCCcccceeeeecCCCccccCC
Q 021579           85 GKDEQGIIEPIKSGIRDPKLGVGKQ  109 (310)
Q Consensus        85 Gk~~qGi~ePI~~~~k~~~~GLGa~  109 (310)
                      |...+|++.||++..+..+.|||+.
T Consensus       531 g~~~~g~~~~~e~~~~~~~~~lg~~  555 (573)
T KOG0154|consen  531 GKKNQGIKEPIEAEGRDRGAGLGAK  555 (573)
T ss_pred             ccccCCCcccccccccccCCCCCcc
Confidence            9999999999999999999999998

>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]

Probab=98.05  E-value=2.1e-06  Score=88.69  Aligned_cols=45  Identities=40%  Similarity=0.619  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCC
Q 021579           66 SSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQE  110 (310)
Q Consensus        66 ~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~  110 (310)
                      ..++..+||++||+. |.|||+.+||+.+||.+....++.|||...
T Consensus        82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l  127 (845)
T KOG3673|consen   82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNL  127 (845)
T ss_pred             cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccc
Confidence            679999999999999 999999999999999999999999999876

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.79  E-value=2e-05  Score=71.07  Aligned_cols=30  Identities=27%  Similarity=0.657  Sum_probs=28.4

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccchhhhHH
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSSYDHNHR  188 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlnsy~H~h~  188 (310)
                      -+|||.+||+.++++..|++|||+.-|+.+
T Consensus        74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrn  103 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDSINFLDHINGKKHQRN  103 (193)
T ss_pred             CceeeeecceeehhhHHHHHHhccHHHHHH
Confidence            389999999999999999999999999985

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=97.74  E-value=3.3e-05  Score=80.07  Aligned_cols=52  Identities=48%  Similarity=0.836  Sum_probs=43.5

Q ss_pred             ccCCCCcHHHHHHHhcCCCCCCCCCCCCCcccceeeee-cC---CCccccCCCccch
Q 021579           62 TKLTSSNIGFRLLQKMGWKGKGLGKDEQGIIEPIKSGI-RD---PKLGVGKQEEDDF  114 (310)
Q Consensus        62 ~~i~~sniG~kML~KMGWkG~GLGk~~qGi~ePI~~~~-k~---~~~GLGa~~~d~~  114 (310)
                      ..|..+|+|.+||.||||.|.|||..++||.+||...- +.   -..|+|... |++
T Consensus       682 ~~lse~NKGhQml~KMGWsG~GLGak~qGI~DPiSGGEVRdR~E~yKGvG~~l-DP~  737 (757)
T KOG4368|consen  682 APLGEENKGHQMLVKMGWSGSGLGAKEQGIQDPISGGEVRDRWEQYKGVGVAL-DPY  737 (757)
T ss_pred             CccccccchhhhHhhcCcccCCcccccccccCcccCccccchhhhhcccCccc-CcH
Confidence            45899999999999999999999999999999997653 22   257999877 543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.71  E-value=7.6e-06  Score=51.78  Aligned_cols=25  Identities=36%  Similarity=0.881  Sum_probs=24.0

Q ss_pred             hhhhhhhhhhhhHHHHHhhccchhh
Q 021579          161 FYCDLCNKQYKLAVEFEAHLSSYDH  185 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hlnsy~H  185 (310)
                      |||.+||+.|.+...|+.|++|..|
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCC
Confidence            8999999999999999999999777

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1996 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.67  E-value=2.7e-05  Score=75.54  Aligned_cols=44  Identities=36%  Similarity=0.690  Sum_probs=37.3

Q ss_pred             cHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCcc---ccCCCc
Q 021579           68 NIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLG---VGKQEE  111 (310)
Q Consensus        68 niG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~G---LGa~~~  111 (310)
                      .+.++||+||||+ |+|||+++||+..|+.+.....+.|   +|+...
T Consensus       213 tvA~~im~k~G~keGqGLGKsEQGlsTalsveKT~~rgG~IIv~a~~~  260 (378)
T KOG1996|consen  213 TVAHKIMQKYGFKEGQGLGKSEQGLSTALSVEKTSKRGGKIIVGAATE  260 (378)
T ss_pred             hHHHHHHHHhCcccccCcCccccccccceeeeeccccCceeEecCccc
Confidence            5789999999999 9999999999999998887766666   555543

>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]

Probab=97.43  E-value=9.9e-05  Score=74.10  Aligned_cols=49  Identities=31%  Similarity=0.667  Sum_probs=41.9

Q ss_pred             ccCCCCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCc
Q 021579           62 TKLTSSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEE  111 (310)
Q Consensus        62 ~~i~~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~  111 (310)
                      ..|+...+|..||.-|||+ |.|+|+++|+ +.+....+++.+.|||+...
T Consensus       149 eaiPVe~FGlAmLrG~GWkpg~gigk~~q~-v~~~~~~~rpkglGLGa~~~  198 (455)
T KOG4315|consen  149 EAIPVEGFGLAMLRGMGWKPGPGIGKNKQD-VKIKEPFLRPKGLGLGADPA  198 (455)
T ss_pred             ccCchhHHHHHHHhcCCCCCCCCcCcCCcc-ccccccccCCCCcccCCCcc
Confidence            3578899999999999999 9999999766 55566778999999999863

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.30  E-value=4.9e-05  Score=46.65  Aligned_cols=25  Identities=44%  Similarity=0.962  Sum_probs=23.9

Q ss_pred             hhhhhhhhhhhhHHHHHhhccchhh
Q 021579          161 FYCDLCNKQYKLAVEFEAHLSSYDH  185 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hlnsy~H  185 (310)
                      |+|++|+++|.+...|..|++|.-|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            7999999999999999999999877

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.17  E-value=0.00012  Score=47.89  Aligned_cols=28  Identities=39%  Similarity=0.809  Sum_probs=25.7

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccchhhhH
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSYDHNH  187 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy~H~h  187 (310)
                      .|||++|++.|.+...+..|++|..|.-
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~   30 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKK   30 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHH
Confidence            5899999999999999999999998754

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.38  E-value=0.017  Score=59.27  Aligned_cols=35  Identities=34%  Similarity=0.750  Sum_probs=30.2

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccchhhhHHHHHHHHHH
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRE  196 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy~H~h~~Rlk~lk~  196 (310)
                      +.||-+|||.|++..++.||.||..|  ++.+.+|++
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKH--kenv~eLrq  326 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKH--KENVAELRQ  326 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHH--HHHHHHHHH
Confidence            58999999999999999999999876  566666663

>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]

Probab=93.21  E-value=0.044  Score=58.66  Aligned_cols=20  Identities=60%  Similarity=1.340  Sum_probs=18.8

Q ss_pred             CCcHHHHHHHhcCCC-CCCCC
Q 021579           66 SSNIGFRLLQKMGWK-GKGLG   85 (310)
Q Consensus        66 ~sniG~kML~KMGWk-G~GLG   85 (310)
                      ...||.+||.+|||. |+|+|
T Consensus       147 s~sIgvrlLrsMGWr~GqgIg  167 (883)
T KOG2138|consen  147 SDSIGVRLLRSMGWREGQGIG  167 (883)
T ss_pred             hhhHHHHHHHHhcCccCCCcC
Confidence            468999999999999 99999

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.07  E-value=0.021  Score=35.40  Aligned_cols=24  Identities=29%  Similarity=0.528  Sum_probs=22.0

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccch
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSY  183 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy  183 (310)
                      +|.|..|++.|.+...|..|...+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            588999999999999999999765

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=91.39  E-value=0.11  Score=44.90  Aligned_cols=35  Identities=34%  Similarity=0.692  Sum_probs=31.8

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccchhhhHHHHHHHHHH
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRE  196 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy~H~h~~Rlk~lk~  196 (310)
                      -|||=.|.+.|.+...+..|.-+..|  +.|+|+|+.
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~ktK~H--KrRvK~l~~   91 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKTKVH--KRRVKELRE   91 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhccHH--HHHHHhccc
Confidence            59999999999999999999998865  789999984

>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]

Probab=91.28  E-value=0.091  Score=49.88  Aligned_cols=47  Identities=26%  Similarity=0.545  Sum_probs=43.0

Q ss_pred             CCcHHHHHHHhcCCC-CCCCCCCCCCcccceeeeecCCCccccCCCcc
Q 021579           66 SSNIGFRLLQKMGWK-GKGLGKDEQGIIEPIKSGIRDPKLGVGKQEED  112 (310)
Q Consensus        66 ~sniG~kML~KMGWk-G~GLGk~~qGi~ePI~~~~k~~~~GLGa~~~d  112 (310)
                      ...++++||..|||+ |.-||.+..-+.+||++-++.-..|+|+..++
T Consensus        37 ~~r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~~g   84 (268)
T KOG1994|consen   37 IMRREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEKPG   84 (268)
T ss_pred             hhhhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccCcC
Confidence            467899999999999 99999999999999999999999999988754

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.25  E-value=0.035  Score=33.13  Aligned_cols=22  Identities=18%  Similarity=0.689  Sum_probs=20.3

Q ss_pred             hhhhhhhhhhhhHHHHHhhccc
Q 021579          161 FYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |-|..|++.|.....|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            6799999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=90.22  E-value=0.22  Score=50.14  Aligned_cols=67  Identities=25%  Similarity=0.454  Sum_probs=44.3

Q ss_pred             HHHHhhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHhhccchhhhH
Q 021579          118 EENIQRRKLDIEVEDTEENAKKREVLAEREQKIQTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNH  187 (310)
Q Consensus       118 ~~~~~rKkLe~E~EEtee~kRKRe~~akREqKIq~ElkeirkvFyC~lCnkqy~~~~eye~Hlnsy~H~h  187 (310)
                      .+|.+|+....= ==|.+.|-.+-.....+.-+.  +++.--++||.+|++.|.....+++||.|.-|--
T Consensus        29 RYNLKRkVA~lP-PItaE~F~~k~~s~~~~~~~~--~e~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~   95 (390)
T KOG2785|consen   29 RYNLKRKVASLP-PITAEEFNEKVLSDDSEKEEN--LEEAESVVYCEACNKSFASPKAHENHLKSKKHVE   95 (390)
T ss_pred             HhhHHhHhhcCC-CcCHHHHhHHHhhhhhhhhhh--hhhcccceehHHhhccccChhhHHHHHHHhhcch
Confidence            466666654311 014555554444444333332  4556669999999999999999999999998854

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=89.35  E-value=0.082  Score=30.83  Aligned_cols=22  Identities=27%  Similarity=0.824  Sum_probs=18.0

Q ss_pred             hhhhhhhhhhhhHHHHHhhccc
Q 021579          161 FYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |-|++|++.|....+|..|+..
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            6799999999999999999864

...

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=89.16  E-value=0.18  Score=37.11  Aligned_cols=27  Identities=37%  Similarity=0.795  Sum_probs=22.8

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccchhhhH
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSSYDHNH  187 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlnsy~H~h  187 (310)
                      .|..|||.|..-|.   .|+.||.|..|..
T Consensus         3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~   29 (49)
T smart00586        3 KKPGYCENCREKYD---DLETHLLSEKHRR   29 (49)
T ss_pred             CCCcccccHhHHHh---hHHHHhccHHHHH
Confidence            46789999988776   6889999999975

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.76  E-value=0.21  Score=36.72  Aligned_cols=27  Identities=33%  Similarity=0.765  Sum_probs=23.0

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccchhhhH
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSSYDHNH  187 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlnsy~H~h  187 (310)
                      .+.-|||.|...|.   .|+.||.|..|..
T Consensus         3 ~k~GYCE~C~~ky~---~l~~Hi~s~~Hr~   29 (49)
T PF07535_consen    3 KKPGYCENCRVKYD---DLEEHIQSEKHRK   29 (49)
T ss_pred             CCCccCccccchhh---hHHHHhCCHHHHH
Confidence            35679999999887   5999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family

Probab=86.35  E-value=0.63  Score=41.45  Aligned_cols=19  Identities=47%  Similarity=0.679  Sum_probs=14.5

Q ss_pred             cCCCccceeecccCCCCcC
Q 021579          291 AKKPKVAVASVFGHDSDEE  309 (310)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~  309 (310)
                      .+.++.+||+||+-|+|+|
T Consensus        85 ~~~~~~~va~~Fn~d~d~e  103 (150)
T PF15473_consen   85 LKPKKLSVAAVFNEDDDSE  103 (150)
T ss_pred             cCCCcchhhhhhccccccC
Confidence            3445677999999888775

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=85.16  E-value=4.1  Score=40.41  Aligned_cols=69  Identities=19%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             hhhhhhhhhhhhhhhHH-HHHhhccchhhhH--HHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021579          158 RKVFYCDLCNKQYKLAV-EFEAHLSSYDHNH--RKRFKEMREMHGTSSRDDRQKREQQRQEREMAKFAQMADAHKQQQ  232 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~-eye~Hlnsy~H~h--~~Rlk~lk~~~~~~~~~~r~~kE~~r~ekel~r~~~~a~~~~~~~  232 (310)
                      +--.||++|-.=+.++. .-..|-.+|-|..  .+||.|+.+...      .+.+|.+...++|+.|...|-+-=++.
T Consensus         8 ~~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi~rks~------~kekeekKls~~la~mEaaA~~syaed   79 (336)
T KOG0150|consen    8 QPKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDIHRKSL------KKEKEEKKLSKELAAMEAAASASYAED   79 (336)
T ss_pred             ccchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHHHHhhH------HHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            34568999988777764 3466888888866  489999987533      345677778999999988776655544

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=84.19  E-value=3.6  Score=41.69  Aligned_cols=35  Identities=26%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             HHhhhhhhhhhhhhhhhhhHHHHHhhccchhhhHH
Q 021579          154 VKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHR  188 (310)
Q Consensus       154 lkeirkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~  188 (310)
                      ..+.-+.|||.+|.+-|+.+..|+.|+-+..|...
T Consensus       232 g~~~~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~  266 (470)
T COG5188         232 GAEWFPKVYCVKCGREFSRSKVFEYHLEGKRHCKE  266 (470)
T ss_pred             hhhhccceeeHhhhhHhhhhHHHHHHHhhhhhhhh
Confidence            45556789999999999999999999999999874

>PLN02748 tRNA dimethylallyltransferase

Probab=82.84  E-value=0.49  Score=48.63  Aligned_cols=35  Identities=23%  Similarity=0.553  Sum_probs=28.8

Q ss_pred             hhhhhhhhhh-hhhhHHHHHhhccchhhhHHHHHHHHH
Q 021579          159 KVFYCDLCNK-QYKLAVEFEAHLSSYDHNHRKRFKEMR  195 (310)
Q Consensus       159 kvFyC~lCnk-qy~~~~eye~Hlnsy~H~h~~Rlk~lk  195 (310)
                      +.|+|++|++ .+..-.+++-|+.|..|.+  |++-++
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~--~~~~~~  452 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRK--RVQRLK  452 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHH--HHhHHH
Confidence            6789999997 8999999999999988765  444333

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=82.41  E-value=0.24  Score=37.94  Aligned_cols=32  Identities=28%  Similarity=0.715  Sum_probs=25.2

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHhhccchhhhHH
Q 021579          157 IRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHR  188 (310)
Q Consensus       157 irkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~  188 (310)
                      +...|.|.+|++.|.+...+..|+++..|...
T Consensus        47 ~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen   47 VKESFRCPYCNKTFRSREALQEHMRSKHHKKR   78 (100)
T ss_dssp             --SSEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred             cCCCCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence            33479999999999999999999999776543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=80.68  E-value=0.39  Score=44.89  Aligned_cols=30  Identities=23%  Similarity=0.508  Sum_probs=23.5

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccchhhhHH
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSSYDHNHR  188 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~  188 (310)
                      -..||||+|+..|.+ +-.-+|+.|.-|++.
T Consensus        82 e~lfyCE~Cd~~ip~-~~~snH~tSttHlls  111 (223)
T KOG2384|consen   82 EALFYCEVCDIYIPN-SKKSNHFTSTTHLLS  111 (223)
T ss_pred             CccchhhhhhhhccC-CCCccchhhHHHHhh
Confidence            458999999877765 346689999999875

>smart00355 ZnF_C2H2 zinc finger

Probab=80.25  E-value=0.59  Score=27.14  Aligned_cols=21  Identities=24%  Similarity=0.659  Sum_probs=19.2

Q ss_pred             hhhhhhhhhhhhHHHHHhhcc
Q 021579          161 FYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hln  181 (310)
                      |.|..|++.|.....+..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            569999999999999999986

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.02  E-value=0.93  Score=31.39  Aligned_cols=30  Identities=23%  Similarity=0.530  Sum_probs=15.9

Q ss_pred             hhhhhhhhhhhh-hhH-HHHHhhccchhhhHH
Q 021579          159 KVFYCDLCNKQY-KLA-VEFEAHLSSYDHNHR  188 (310)
Q Consensus       159 kvFyC~lCnkqy-~~~-~eye~Hlnsy~H~h~  188 (310)
                      +-|||+.|++-+ .+. ..-..|+.+..|...
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~n   33 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKEN   33 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHH
Confidence            459999999999 455 455899999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 56/189 (29%)

Query: 16  DKQPHEKEQAYQDSVIEDLAEDFRLPIHQKPIENVDLDDVEQASLDTKLTSSNIG----- 70
           D +  E +  Y+D ++    + F        ++N D  DV+     + L+   I      
Sbjct: 8   DFETGEHQYQYKD-ILSVFEDAF--------VDNFDCKDVQD-MPKSILSKEEIDHIIMS 57

Query: 71  -------FRLLQKMGWKGK---------GLGKDEQGIIEPIKSGIRDPKLGVGKQEEDDF 114
                   RL   +  K +          L  + + ++ PIK+  R P +         +
Sbjct: 58  KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-----MTRMY 112

Query: 115 FTAEENIQRRKLDIEVEDTEENAKKREVLAEREQ---KIQTEVKEIRKVFYCDL-----C 166
               + +     D +V        K  V   R Q   K++  + E+R      +      
Sbjct: 113 IEQRDRLYN---DNQV------FAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 167 NKQYKLAVE 175
            K + +A++
Sbjct: 162 GKTW-VALD 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.11
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.77
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	92.39
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	91.57
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	90.12
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	90.11
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	89.08
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	88.94
1ard_A	29	Yeast transcription factor ADR1; transcription reg	88.79
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	88.08
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	88.05
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	87.78
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	87.38
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.91
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	86.67
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	86.62
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	86.51
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.48
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.96
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	85.93
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	85.62
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	85.44
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.93
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.82
1paa_A	30	Yeast transcription factor ADR1; transcription reg	84.66
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	84.37
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.35
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.25
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	84.24
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	83.7
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	83.57
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.3
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	83.03
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.02
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	82.93
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	82.86
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	82.81
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	82.5
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.31
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	82.03
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.91
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	81.84
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.66
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.55
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.36
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	81.35
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.34
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.21
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	81.11
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	80.89
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.84
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.79
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	80.79
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.73
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.64
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.62
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.57
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.54
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.46
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.42
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.18
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.11
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	80.04
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	80.02

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.11  E-value=0.0013  Score=55.19  Aligned_cols=37  Identities=24%  Similarity=0.522  Sum_probs=31.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccchhhhHHHHHHHHHH
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRE  196 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~~Rlk~lk~  196 (310)
                      .+.|||..|++.|.+...|..|++|..|  ++|++.|+.
T Consensus        48 ekpfyC~~C~K~F~~~~~L~~H~rsK~H--Krrvk~l~~   84 (124)
T 1zr9_A           48 GGLHRCLACARYFIDSTNLKTHFRSKDH--KKRLKQLSV   84 (124)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTCHHH--HHHHHHHTS
T ss_pred             CcceEcccCcchhCCHHHHHHHHhhhhh--hHHHHHhcc
Confidence            4689999999999999999999998765  667777764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.77  E-value=0.0027  Score=52.30  Aligned_cols=33  Identities=24%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccchhhhHHHH
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSSYDHNHRKR  190 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~~R  190 (310)
                      ...|||++||+.|.....+..|+++.-|.-+-+
T Consensus        91 ~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~  123 (127)
T 1zu1_A           91 DRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLR  123 (127)
T ss_dssp             CTTTEETTTTEECSSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHH
Confidence            458999999999999999999999999876544

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=92.39  E-value=0.043  Score=45.10  Aligned_cols=38  Identities=21%  Similarity=0.245  Sum_probs=32.0

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhHHHHHhhccchhhhHH
Q 021579          151 QTEVKEIRKVFYCDLCNKQYKLAVEFEAHLSSYDHNHR  188 (310)
Q Consensus       151 q~ElkeirkvFyC~lCnkqy~~~~eye~Hlnsy~H~h~  188 (310)
                      -.+...+.+.+||.+|+.+|.+..++..|++|.-|.-+
T Consensus        23 ~~e~~~~~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~   60 (127)
T 1zu1_A           23 IRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANK   60 (127)
T ss_dssp             HHHTTTTBCSSEETTTTEECCSHHHHHHHHHCHHHHHH
T ss_pred             hccccccCCCCcCcCCCCEeCCHHHHHHHHCcHHHHHH
Confidence            34556666789999999999999999999999997644

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=91.57  E-value=0.024  Score=31.88  Aligned_cols=24  Identities=21%  Similarity=0.663  Sum_probs=21.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            468999999999999999999764

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=90.12  E-value=0.046  Score=31.18  Aligned_cols=24  Identities=21%  Similarity=0.492  Sum_probs=21.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            468999999999999999999764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.11  E-value=0.046  Score=31.25  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.1

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ   24 (29)
Confidence            468999999999999999999753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.08  E-value=0.054  Score=30.94  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=21.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|.+|++.|.....+..|+..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            468999999999999999999754

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=88.94  E-value=0.063  Score=36.34  Aligned_cols=25  Identities=24%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccch
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSSY  183 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlnsy  183 (310)
                      ..|||+.||..|.....|++|---|
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~Y   31 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQFY   31 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHHT
T ss_pred             CcCeeccccceehhhHHHhhhheec
Confidence            4689999999999999999995433

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=88.79  E-value=0.06  Score=30.43  Aligned_cols=24  Identities=21%  Similarity=0.688  Sum_probs=20.9

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH
Confidence            358899999999999999999754

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=88.08  E-value=0.046  Score=31.06  Aligned_cols=24  Identities=21%  Similarity=0.413  Sum_probs=21.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL   24 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH
Confidence            458899999999999999999865

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=88.05  E-value=0.054  Score=30.71  Aligned_cols=24  Identities=25%  Similarity=0.744  Sum_probs=21.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|..|++.|.....+..|+..
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            468899999999999999999764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=87.78  E-value=0.058  Score=30.52  Aligned_cols=24  Identities=25%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|..|++.|.....+..|+..
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            468899999999999999999754

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=87.38  E-value=0.055  Score=30.48  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=20.7

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|..|++.|.....+..|+..
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHH
Confidence            358899999999999999998754

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.91  E-value=0.065  Score=30.29  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhcc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      +.|.|+.|++.|.....+..|+.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCccCCCcChhhCCHHHHHHHHH
Confidence            46889999999999999999874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=86.67  E-value=0.065  Score=32.02  Aligned_cols=24  Identities=21%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~   24 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT   24 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH
Confidence            358899999999999999999764

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=86.62  E-value=0.11  Score=31.34  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|+.|++.|.....+..|+..
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCCccCCCCCcccCcHHHHHHHHHH
Confidence            3579999999999999999998754

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=86.51  E-value=0.064  Score=32.38  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|+.|++.|.....+..|+..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~   24 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL   24 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH
Confidence            468899999999999999999753

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.48  E-value=0.057  Score=32.65  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=21.5

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|.+|++.|.....+..|+..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            8 KPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             CSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH
Confidence            579999999999999999999754

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.20  E-value=0.084  Score=31.86  Aligned_cols=24  Identities=17%  Similarity=0.663  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|.+|++.|.....+..|+..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            8 LLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCeECCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999865

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.96  E-value=0.08  Score=31.44  Aligned_cols=23  Identities=22%  Similarity=0.684  Sum_probs=20.9

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhcc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      +.|.|.+|++.|.....+..|+.
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            6 SGYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCcchhCCHHHHHHHHH
Confidence            57999999999999999999975

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=85.93  E-value=0.091  Score=31.40  Aligned_cols=24  Identities=21%  Similarity=0.575  Sum_probs=21.6

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|.+|++.|.....+..|+..
T Consensus         6 k~~~C~~C~k~f~~~~~l~~H~~~   29 (35)
T 1srk_A            6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             cCeeCCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999754

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=85.62  E-value=0.13  Score=28.68  Aligned_cols=22  Identities=18%  Similarity=0.575  Sum_probs=19.9

Q ss_pred             hhhhhhhhhhhhHHHHHhhccc
Q 021579          161 FYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       161 FyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|+.|++.|.....+..|+..
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            7799999999999999999864

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=85.44  E-value=0.26  Score=38.26  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=24.4

Q ss_pred             hhhhhhhhhhh-hh-HHHHHhhccchhhhHH
Q 021579          160 VFYCDLCNKQY-KL-AVEFEAHLSSYDHNHR  188 (310)
Q Consensus       160 vFyC~lCnkqy-~~-~~eye~Hlnsy~H~h~  188 (310)
                      -|||+.||.-+ .+ .+....|+++..|.-.
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~n   33 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKEN   33 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHH
Confidence            48999999999 45 5558999999999765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.93  E-value=0.14  Score=30.66  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=21.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhcc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      .+.|.|.+|++.|.....+..|+.
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH
Confidence            357999999999999999999874

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.82  E-value=0.1  Score=31.58  Aligned_cols=24  Identities=17%  Similarity=0.616  Sum_probs=21.4

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|.+|++.|.....+..|+..
T Consensus         8 k~~~C~~C~k~f~~~~~l~~H~~~   31 (37)
T 2elo_A            8 RSYSCPVCEKSFSEDRLIKSHIKT   31 (37)
T ss_dssp             CCCEETTTTEECSSHHHHHHHHHH
T ss_pred             CCcCCCCCCCccCCHHHHHHHHHH
Confidence            579999999999999999999754

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=84.66  E-value=0.12  Score=29.36  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHhh
Q 021579          159 KVFYCDLCNKQYKLAVEFEAH  179 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~H  179 (310)
                      +.|.|..|++.|.....+..|
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H   21 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRH   21 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHH
T ss_pred             CCcCCcccCcccCChHHHHHH
Confidence            358899999999999999999

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=84.37  E-value=0.09  Score=29.68  Aligned_cols=24  Identities=17%  Similarity=0.535  Sum_probs=20.7

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|..|++.|.....+..|+..
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH
Confidence            358899999999999999999753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.35  E-value=0.12  Score=31.07  Aligned_cols=25  Identities=40%  Similarity=0.850  Sum_probs=21.7

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|..|++.|.....+..|+..
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCEECCCCCceeCCHHHHHHHHHH
Confidence            3679999999999999999998753

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.25  E-value=0.11  Score=31.12  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=21.7

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999753

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=84.24  E-value=0.12  Score=31.88  Aligned_cols=24  Identities=17%  Similarity=0.731  Sum_probs=21.4

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      +.|.|++|++.|.....+..|+..
T Consensus         5 k~~~C~~C~k~f~~~~~L~~H~~~   28 (39)
T 1njq_A            5 RSYTCSFCKREFRSAQALGGHMNV   28 (39)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHT
T ss_pred             CceECCCCCcccCCHHHHHHHHHH
Confidence            579999999999999999999754

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=83.70  E-value=0.14  Score=33.68  Aligned_cols=24  Identities=33%  Similarity=0.715  Sum_probs=21.6

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhcc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      .+.|.|.+|++.|.....+..|+.
T Consensus         5 ~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            5 DKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             TSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CcCEECCCcCcccCCHHHHHHHhh
Confidence            367999999999999999999976

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.57  E-value=0.21  Score=31.00  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIRV   33 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGGG
T ss_pred             CCCeeCCCccchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.30  E-value=0.19  Score=31.47  Aligned_cols=25  Identities=20%  Similarity=0.476  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTRT   34 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHhhh
Confidence            3579999999999999999999864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.05  E-value=0.19  Score=31.96  Aligned_cols=25  Identities=20%  Similarity=0.574  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQAI   34 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHTT
T ss_pred             CCCeECCCCChhhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.03  E-value=0.2  Score=31.86  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQKI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCEECCccCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.03  E-value=0.19  Score=32.06  Aligned_cols=25  Identities=20%  Similarity=0.515  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQRV   34 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.02  E-value=0.18  Score=32.30  Aligned_cols=25  Identities=24%  Similarity=0.656  Sum_probs=22.4

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHSV   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTTT
T ss_pred             CcccCCCCCCcccCcHHHHHHHHHh
Confidence            3579999999999999999999864

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.93  E-value=0.076  Score=29.76  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=20.0

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhcc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      +.|.|..|++.|.....+..|+.
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH
Confidence            35889999999999999998874

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.86  E-value=0.19  Score=31.20  Aligned_cols=25  Identities=16%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQKM   32 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.81  E-value=0.19  Score=32.01  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQRI   34 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHTT
T ss_pred             CcCccCCCCCCccCChHHHHHHHHH
Confidence            3579999999999999999999864

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.50  E-value=0.16  Score=32.25  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHERT   34 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CcCeECCCCCcccCchHHHHHHHhH
Confidence            3579999999999999999999764

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.31  E-value=0.19  Score=31.93  Aligned_cols=25  Identities=20%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQRI   34 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHGG
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999865

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.03  E-value=0.2  Score=31.22  Aligned_cols=25  Identities=20%  Similarity=0.663  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~~   33 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLRI   33 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTTT
T ss_pred             CCCEECCCCCCccCCHHHHHHHHHh
Confidence            3579999999999999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.91  E-value=0.24  Score=31.48  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQVI   34 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHTT
T ss_pred             CCCeECCcCChhhCCHHHHHHHHHH
Confidence            3679999999999999999999764

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.84  E-value=0.24  Score=31.51  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRRI   34 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHTT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.66  E-value=0.21  Score=31.81  Aligned_cols=25  Identities=20%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRGI   34 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHh
Confidence            3579999999999999999999864

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.55  E-value=0.23  Score=31.62  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHTT
T ss_pred             CcCeECCCCCcccCChhHHHHHhHh
Confidence            3679999999999999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.36  E-value=0.18  Score=32.07  Aligned_cols=25  Identities=16%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHhH
Confidence            3579999999999999999999865

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.35  E-value=0.19  Score=31.27  Aligned_cols=25  Identities=20%  Similarity=0.527  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHERI   32 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGGG
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.34  E-value=0.28  Score=31.20  Aligned_cols=25  Identities=20%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRGI   34 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhhh
Confidence            4679999999999999999999864

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.21  E-value=0.16  Score=31.18  Aligned_cols=21  Identities=19%  Similarity=0.543  Sum_probs=19.6

Q ss_pred             hhhhhhhhhhhhhhHHHHHhh
Q 021579          159 KVFYCDLCNKQYKLAVEFEAH  179 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~H  179 (310)
                      +.|.|+.|++.|.....+..|
T Consensus         8 k~~~C~~C~k~f~~~~~L~~H   28 (37)
T 2elm_A            8 HLYYCSQCHYSSITKNCLKRH   28 (37)
T ss_dssp             CEEECSSSSCEEECHHHHHHH
T ss_pred             cCeECCCCCcccCCHHHHHHH
Confidence            579999999999999999988

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.11  E-value=0.25  Score=31.12  Aligned_cols=25  Identities=24%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|..|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQKT   34 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGGG
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.89  E-value=0.19  Score=31.86  Aligned_cols=25  Identities=20%  Similarity=0.489  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQRI   34 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.84  E-value=0.26  Score=31.43  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|+.|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQRV   34 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGGG
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHHh
Confidence            3579999999999999999999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.79  E-value=0.23  Score=31.70  Aligned_cols=25  Identities=24%  Similarity=0.707  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|+.|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQRV   34 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHTT
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999764

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.79  E-value=0.28  Score=31.12  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999865

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.73  E-value=0.14  Score=31.04  Aligned_cols=23  Identities=13%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             hhhhhhhhhhhhhhH-HHHHhhcc
Q 021579          159 KVFYCDLCNKQYKLA-VEFEAHLS  181 (310)
Q Consensus       159 kvFyC~lCnkqy~~~-~eye~Hln  181 (310)
                      +.|.|.+|++.|... ..+..|+.
T Consensus         8 k~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            8 RAMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CCEECSSSSCEECSSCHHHHHHHH
T ss_pred             CCeECCCCChhhccCHHHHHHHHH
Confidence            579999999999999 99999874

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.64  E-value=0.22  Score=31.63  Aligned_cols=25  Identities=20%  Similarity=0.526  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQRI   34 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHHH
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHHh
Confidence            3579999999999999999999753

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.62  E-value=0.2  Score=31.86  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQKI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.57  E-value=0.22  Score=31.61  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRRI   34 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGGG
T ss_pred             CcCEECCCCChhhCChHHHHHHHHh
Confidence            3579999999999999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.54  E-value=0.25  Score=30.98  Aligned_cols=25  Identities=16%  Similarity=0.394  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQKT   34 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHTT
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHHH
Confidence            3579999999999999999999764

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.46  E-value=0.22  Score=31.21  Aligned_cols=25  Identities=20%  Similarity=0.537  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQRT   34 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHH
Confidence            3579999999999999999999753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.42  E-value=0.24  Score=32.31  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHL  180 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hl  180 (310)
                      |.|.|..|+|.|.....+..|.
T Consensus         7 kp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            7 ARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCEETTTTEECSCHHHHHHHH
T ss_pred             cCeECCCCCCccCCHhHccCcC
Confidence            6799999999999999999997

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.18  E-value=0.32  Score=30.81  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|.+|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQRI   34 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHTT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHh
Confidence            3579999999999999999999865

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.11  E-value=0.24  Score=31.62  Aligned_cols=25  Identities=28%  Similarity=0.745  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLRV   34 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCeECcccChhhCCHHHHHHHHHH
Confidence            3579999999999999999999753

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.06  E-value=0.25  Score=31.50  Aligned_cols=25  Identities=24%  Similarity=0.597  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....|..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQRV   34 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGGG
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHHH
Confidence            3579999999999999999999864

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=80.04  E-value=0.27  Score=31.29  Aligned_cols=25  Identities=20%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~   34 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQNV   34 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGGG
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH
Confidence            3579999999999999999999865

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=80.02  E-value=0.22  Score=30.97  Aligned_cols=25  Identities=16%  Similarity=0.456  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      .+.|.|++|++.|.....+..|+..
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~~   32 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQRT   32 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHGG
T ss_pred             CCCccCCCcChhhCCHHHHHHHHHh
Confidence            3579999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.42
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.71
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	90.19
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.45
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	89.3
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	88.91
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	88.68
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	84.89
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.71
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	82.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	81.85
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.84
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	80.65
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	80.49

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=1.4e-05  Score=58.98  Aligned_cols=35  Identities=26%  Similarity=0.572  Sum_probs=31.6

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccchhhhHHHHHHHHHH
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKEMRE  196 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy~H~h~~Rlk~lk~  196 (310)
                      -|||-.|++.|.+...|.+|++|..|  ++|++.|+.
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ksKkH--Krrvk~L~~   49 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRSKDH--KKRLKQLSV   49 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHH--HHHHHHHTS
T ss_pred             EEecccccCccCCHHHHHHHHcccHH--HHHHHHhcc
Confidence            39999999999999999999999976  678998865

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.71  E-value=0.0097  Score=41.99  Aligned_cols=34  Identities=26%  Similarity=0.457  Sum_probs=29.5

Q ss_pred             hhhhhhhhhhhhhHHHHHhhccchhhhHHHHHHH
Q 021579          160 VFYCDLCNKQYKLAVEFEAHLSSYDHNHRKRFKE  193 (310)
Q Consensus       160 vFyC~lCnkqy~~~~eye~Hlnsy~H~h~~Rlk~  193 (310)
                      .-||.|||.+|.+......|..+.-|.-+-||.+
T Consensus        21 nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          21 SKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            4489999999999999999999999987766653

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.016  Score=35.66  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=21.7

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|-|..|++.|.....+..|+-.
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG
T ss_pred             CCEECCcCCCeecchHHhhhhcCc
Confidence            579999999999999999999765

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.45  E-value=0.022  Score=34.87  Aligned_cols=24  Identities=21%  Similarity=0.688  Sum_probs=21.5

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|-|++|++.|+....+..|+..
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~   24 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT
T ss_pred             CcCCCCCCCCCCCCchHcccccCc
Confidence            468999999999999999999754

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.021  Score=34.86  Aligned_cols=24  Identities=21%  Similarity=0.661  Sum_probs=21.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|-|+.|++.|+....+..|+-.
T Consensus         2 KPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           2 KPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHH
T ss_pred             cCccCCCCcCEecccccccccCCC
Confidence            679999999999999999998743

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.91  E-value=0.023  Score=36.27  Aligned_cols=24  Identities=21%  Similarity=0.575  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|.|++|++.|+....+..|+..
T Consensus         6 kPy~C~~C~k~F~~~~~L~~H~r~   29 (35)
T d1srka_           6 RPFVCRICLSAFTTKANCARHLKV   29 (35)
T ss_dssp             SCEECSSSCCEESSHHHHHHHHGG
T ss_pred             ccccCCCCCCcccChHHHHHHccc
Confidence            689999999999999999999753

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.025  Score=36.05  Aligned_cols=24  Identities=17%  Similarity=0.548  Sum_probs=21.8

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|.|++|++.|.....+..|+..
T Consensus         7 kP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           7 KPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CCEeCCCCcccccchHHHHHHccc
Confidence            689999999999999999999753

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.89  E-value=0.074  Score=33.83  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      -|.|-|..|++.|.....+..|+..
T Consensus         9 eKPy~C~~C~k~F~~~~~L~~H~r~   33 (37)
T d1p7aa_           9 IKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             ccCeEeCCCCCEecCHHHHHHHHhc
Confidence            3689999999999999999999753

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.71  E-value=0.077  Score=32.45  Aligned_cols=22  Identities=32%  Similarity=0.723  Sum_probs=19.8

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHL  180 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hl  180 (310)
                      |.|.|++|++-|..+.|-..|.
T Consensus         2 kPf~C~~CgrkFArsderkRH~   23 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRHT   23 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHH
T ss_pred             CCcccchhhhhhhcchhhhhhh
Confidence            5799999999999999988875

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.50  E-value=0.15  Score=36.29  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=23.6

Q ss_pred             hhhhhhhhhhh-hHHH-HHhhccchhhhHHH
Q 021579          161 FYCDLCNKQYK-LAVE-FEAHLSSYDHNHRK  189 (310)
Q Consensus       161 FyC~lCnkqy~-~~~e-ye~Hlnsy~H~h~~  189 (310)
                      |||+.||.-|+ ++.. =..|+++..|.-..
T Consensus         4 yyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~   34 (61)
T d2vrda1           4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENV   34 (61)
T ss_dssp             CEETTTTEECSCCSHHHHHHHTCCTHHHHHH
T ss_pred             hhhhhhcchhccCChhHHHHHhccHHHHHHH
Confidence            89999999997 5444 47899999997653

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=0.074  Score=33.68  Aligned_cols=24  Identities=21%  Similarity=0.621  Sum_probs=21.7

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhccc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      |.|-|+.|++.|.....+..|+..
T Consensus         7 kPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           7 KPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCEECCCCCCCcCCHhHHHHhCcc
Confidence            689999999999999999999753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.84  E-value=0.074  Score=34.52  Aligned_cols=25  Identities=20%  Similarity=0.606  Sum_probs=22.1

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHhhcc
Q 021579          157 IRKVFYCDLCNKQYKLAVEFEAHLS  181 (310)
Q Consensus       157 irkvFyC~lCnkqy~~~~eye~Hln  181 (310)
                      +-|.|.|+.|++.|.....+..|+.
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCCccCCCCCCCcCChHHhhccCc
Confidence            3478999999999999999999974

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.085  Score=31.72  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             hhhhhhhhhhhhhhHHHHHhhc
Q 021579          159 KVFYCDLCNKQYKLAVEFEAHL  180 (310)
Q Consensus       159 kvFyC~lCnkqy~~~~eye~Hl  180 (310)
                      |.|-|+.|+|.|.....+..|.
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hq   22 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQ   22 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCc
Confidence            5689999999999999998885

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.49  E-value=0.11  Score=33.02  Aligned_cols=25  Identities=24%  Similarity=0.668  Sum_probs=21.9

Q ss_pred             hhhhhhhhhhhhhhhHHHHHhhccc
Q 021579          158 RKVFYCDLCNKQYKLAVEFEAHLSS  182 (310)
Q Consensus       158 rkvFyC~lCnkqy~~~~eye~Hlns  182 (310)
                      -|.|-|+.|+|.|.....+..|.-.
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r~   34 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRRT   34 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CCCEecCCCCceeeCHHHHHHhCcc
Confidence            3689999999999999999998653