Citrus Sinensis ID: 021582

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSLHQ

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccEEEEccccccEEEcccccHHHHHHHcc

cccccccccccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHccccHHHHHHHHHHHHHcccHHHEcccccEEEEEcccccccccHHHHHHHHHHHHc

meseselvpfpllptpietnyractipyrfptdnpkkptrtEIAWLDLFLNSipsfkkraesdptvpdaHVRAEKFAQRYSEILEDmkkdpethggppdcILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLAScqnlvprpwviddleTFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAandlpsindvtyPELIEIMSKLKDekgqlmgvdtsklliansgndlpvrngSAAFYFLKSLHQ

meseselvpfpllptpietnyrACTIPyrfptdnpkkpTRTEIAWLDLFLNSIPSFkkraesdptvpdahvRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRdifkkvkdeenakaislfgdvvrlndVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVilaandlpsindvTYPELIEIMSKLKDEKGQLMGVDTSKLLIansgndlpvrNGSAAFYFLKSLHQ

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFkvkwskkawkkavIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSLHQ

*******VPFPLLPTPIETNYRACTIPYRFPTD*****TRTEIAWLDLFLNSIP********************************************DCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFL*****

****SELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAES*****DA*VRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFY*******

MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKK**********AHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSLHQ

******LVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSLH*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		310	2.2.26 [Sep-21-2011]
Q949P3		367	Uncharacterized protein A	no	no	0.951	0.803	0.827	1e-143
Q5R5F8		773	Pantothenate kinase 4 OS=	yes	no	0.803	0.322	0.366	4e-35
Q8L5Y9		901	Pantothenate kinase 2 OS=	no	no	0.806	0.277	0.357	6e-35
Q4R4U1		773	Pantothenate kinase 4 OS=	N/A	no	0.803	0.322	0.366	7e-35
Q80YV4		820	Pantothenate kinase 4 OS=	yes	no	0.803	0.303	0.366	7e-35
Q9NVE7		773	Pantothenate kinase 4 OS=	yes	no	0.8	0.320	0.367	8e-35
Q923S8		773	Pantothenate kinase 4 OS=	yes	no	0.719	0.288	0.387	3e-34

>sp\|Q949P3\|Y2734_ARATH Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1	Back alignment and function desciption

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/295 (82%), Positives = 270/295 (91%)

Query: 1   MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
           MES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRA
Sbjct: 1   MESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRA 60

Query: 61  ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
           ESD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIF
Sbjct: 61  ESDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIF 120

Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
           KKVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DG
Sbjct: 121 KKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDG 180

Query: 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR 240
           MSFLASCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRR
Sbjct: 181 MSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRR 240

Query: 241 GTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295
           G QV+LAAN+LPSIND+T  EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPV
Sbjct: 241 GAQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPV 295

Arabidopsis thaliana (taxid: 3702)

>sp\|Q5R5F8\|PANK4_PONAB Pantothenate kinase 4 OS=Pongo abelii GN=PANK4 PE=2 SV=1	Back alignment and function description

>sp\|Q8L5Y9\|PANK2_ARATH Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2	Back alignment and function description

>sp\|Q4R4U1\|PANK4_MACFA Pantothenate kinase 4 OS=Macaca fascicularis GN=PANK4 PE=2 SV=2	Back alignment and function description

>sp\|Q80YV4\|PANK4_MOUSE Pantothenate kinase 4 OS=Mus musculus GN=Pank4 PE=1 SV=2	Back alignment and function description

>sp\|Q9NVE7\|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1	Back alignment and function description

>sp\|Q923S8\|PANK4_RAT Pantothenate kinase 4 OS=Rattus norvegicus GN=Pank4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		310
225428330		367	PREDICTED: uncharacterized protein At2g1	0.951	0.803	0.857	1e-149
297836456		367	hypothetical protein ARALYDRAFT_480618 [	0.951	0.803	0.844	1e-145
297798382		367	hypothetical protein ARALYDRAFT_491111 [	0.951	0.803	0.840	1e-145
363806824		367	uncharacterized protein LOC100804454 [Gl	0.951	0.803	0.844	1e-145
21554145		367	unknown [Arabidopsis thaliana]	0.951	0.803	0.837	1e-144
18418688		367	uncharacterized protein [Arabidopsis tha	0.951	0.803	0.833	1e-143
21554574		367	unknown [Arabidopsis thaliana]	0.964	0.814	0.819	1e-142
449454313		367	PREDICTED: uncharacterized protein At2g1	0.951	0.803	0.847	1e-142
18398388		367	uncharacterized protein [Arabidopsis tha	0.951	0.803	0.827	1e-141
255546706		367	pantothenate kinase, putative [Ricinus c	0.951	0.803	0.871	1e-141

>gi\|225428330\|ref\|XP_002283109.1\| PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera] gi\|297744464\|emb\|CBI37726.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/295 (85%), Positives = 280/295 (94%)

Query: 1   MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
           MES SELV FPLL TPIE+NYRACTIPYRFP+DNP+K T TE++W+DLFLNSIPSF+KRA
Sbjct: 1   MESSSELVAFPLLLTPIESNYRACTIPYRFPSDNPRKATPTELSWIDLFLNSIPSFRKRA 60

Query: 61  ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
           ESD TV DA+V+AEKFAQRYSEILED+KKDPE+HGGPPDC+LLCRLREQVLRELGFRDIF
Sbjct: 61  ESDGTVADANVKAEKFAQRYSEILEDLKKDPESHGGPPDCVLLCRLREQVLRELGFRDIF 120

Query: 121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
           KKVKDEENAKAISLF +VV LND IEDE KR+E+L+RGIFAGNIFDLGSAQLAEVFSKDG
Sbjct: 121 KKVKDEENAKAISLFENVVHLNDAIEDESKRLENLVRGIFAGNIFDLGSAQLAEVFSKDG 180

Query: 181 MSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRR 240
           MSFLASCQNLVPRPWVIDDL++FK+KWS+K+WKK +IFVDNSGADIILGILPFARELLR 
Sbjct: 181 MSFLASCQNLVPRPWVIDDLDSFKLKWSRKSWKKVIIFVDNSGADIILGILPFARELLRC 240

Query: 241 GTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295
           G+QV+LAANDLPSINDVTYPELIEI++KLKDE GQL+GVDTS LLIANSGNDLPV
Sbjct: 241 GSQVVLAANDLPSINDVTYPELIEIIAKLKDENGQLVGVDTSNLLIANSGNDLPV 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297836456\|ref\|XP_002886110.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata] gi\|297331950\|gb\|EFH62369.1\| hypothetical protein ARALYDRAFT_480618 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|297798382\|ref\|XP_002867075.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata] gi\|297312911\|gb\|EFH43334.1\| hypothetical protein ARALYDRAFT_491111 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|363806824\|ref\|NP_001242288.1\| uncharacterized protein LOC100804454 [Glycine max] gi\|255641170\|gb\|ACU20862.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|21554145\|gb\|AAM63225.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18418688\|ref\|NP_567984.1\| uncharacterized protein [Arabidopsis thaliana] gi\|17063179\|gb\|AAL32984.1\| unknown protein [Arabidopsis thaliana] gi\|23506025\|gb\|AAN28872.1\| At4g35360/F23E12_80 [Arabidopsis thaliana] gi\|332661103\|gb\|AEE86503.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|21554574\|gb\|AAM63619.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449454313\|ref\|XP_004144900.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449471318\|ref\|XP_004153274.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus] gi\|449500143\|ref\|XP_004161016.1\| PREDICTED: uncharacterized protein At2g17340-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18398388\|ref\|NP_565412.1\| uncharacterized protein [Arabidopsis thaliana] gi\|73921093\|sp\|Q949P3.1\|Y2734_ARATH RecName: Full=Uncharacterized protein At2g17340 gi\|15293087\|gb\|AAK93654.1\| unknown protein [Arabidopsis thaliana] gi\|20465695\|gb\|AAM20316.1\| unknown protein [Arabidopsis thaliana] gi\|330251520\|gb\|AEC06614.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255546706\|ref\|XP_002514412.1\| pantothenate kinase, putative [Ricinus communis] gi\|223546509\|gb\|EEF48008.1\| pantothenate kinase, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		310
TAIR\|locus:2122123		367	AT4G35360 "AT4G35360" [Arabido	0.951	0.803	0.806	7.8e-126
TAIR\|locus:2827544		367	AT2G17340 "AT2G17340" [Arabido	0.951	0.803	0.8	3.9e-124
TAIR\|locus:2827582		361	AT2G17320 "AT2G17320" [Arabido	0.932	0.800	0.743	3.6e-112
UNIPROTKB\|F1MLD0		773	PANK4 "Uncharacterized protein	0.903	0.362	0.340	8.3e-34
UNIPROTKB\|I3LPY8		780	PANK4 "Uncharacterized protein	0.903	0.358	0.340	1.1e-33
UNIPROTKB\|E9PHT6		734	PANK4 "Pantothenate kinase 4"	0.8	0.337	0.359	1.2e-33
UNIPROTKB\|E2QXZ0		773	PANK4 "Uncharacterized protein	0.903	0.362	0.343	1.4e-33
UNIPROTKB\|Q9NVE7		773	PANK4 "Pantothenate kinase 4"	0.8	0.320	0.359	1.4e-33
WB\|WBGene00006862		755	pnk-4 [Caenorhabditis elegans	0.890	0.365	0.332	3.5e-33
MGI\|MGI:2387466		820	Pank4 "pantothenate kinase 4"	0.903	0.341	0.346	4.4e-33

TAIR\|locus:2122123 AT4G35360 "AT4G35360" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 238/295 (80%), Positives = 262/295 (88%)

Query:     1 MESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRA 60
             MES+SE+V  PLLPTPIE+NYRACTIPYRFP+DNP+K T TEI+W+DLF NSIPSFK+RA
Sbjct:     1 MESDSEMVALPLLPTPIESNYRACTIPYRFPSDNPRKATPTEISWIDLFSNSIPSFKERA 60

Query:    61 ESDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIF 120
             ESD TVPDA VRAEKFA+RY+EILED+KKDPE+HGGPPDCILLCR+RE +LRELGFRDIF
Sbjct:    61 ESDTTVPDAPVRAEKFAKRYAEILEDLKKDPESHGGPPDCILLCRIRELILRELGFRDIF 120

Query:   121 KKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDG 180
             KKVKDEENAKAISLF +VVRL+D I DEGKR+E+L+RGIFAGNIFDLGSAQLAEVFSKDG
Sbjct:   121 KKVKDEENAKAISLFPEVVRLSDAINDEGKRIENLVRGIFAGNIFDLGSAQLAEVFSKDG 180

Query:   181 MSFLASCQNLVPRPWVIDDLETFXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRR 240
             MSFLASCQNLV RPWVIDDL+ F             IFVDNSGADIILGILPFARE+LR 
Sbjct:   181 MSFLASCQNLVSRPWVIDDLDNFQARWLKKPWKKAVIFVDNSGADIILGILPFAREMLRL 240

Query:   241 GTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295
             G QV+LAAN+LPSINDVTY EL EI+SKL DE GQLMGVDTS LLIANSGNDLPV
Sbjct:   241 GMQVVLAANELPSINDVTYIELAEILSKLNDENGQLMGVDTSNLLIANSGNDLPV 295

GO:0004594 "pantothenate kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

TAIR\|locus:2827544 AT2G17340 "AT2G17340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2827582 AT2G17320 "AT2G17320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MLD0 PANK4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LPY8 PANK4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PHT6 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXZ0 PANK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NVE7 PANK4 "Pantothenate kinase 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00006862 pnk-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

MGI\|MGI:2387466 Pank4 "pantothenate kinase 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949P3	Y2734_ARATH	No assigned EC number	0.8271	0.9516	0.8038	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		310
pfam01937		315	pfam01937, DUF89, Protein of unknown function DUF8	1e-56
PLN02902		876	PLN02902, PLN02902, pantothenate kinase	9e-46

>gnl\|CDD\|216798 pfam01937, DUF89, Protein of unknown function DUF89	Back alignment and domain information

 Score =  184 bits (470), Expect = 1e-56
 Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 8/235 (3%)

Query: 49  FLNSIPSFKKRAESD-PTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLR 107
               +P    +   D     DA    +K     SE+  +++ DP      P     C L 
Sbjct: 2   APERLPCILTQVIDDLELATDAEEELKKIIGELSELKAELQTDPPLPPLAPWLFAECYLY 61

Query: 108 EQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDL 167
            ++L   G  D FK+ K+  N KA++   ++    + +EDE +  + L++    GNI DL
Sbjct: 62  RRLLEAFGNYDPFKEQKELSNEKALAAVPELAERLEELEDEEELFKELLKISLWGNIIDL 121

Query: 168 GSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADII 227
           G     E   +D     +  +  + RP ++DD +    +      K+    +DN+G +++
Sbjct: 122 GLLAG-EDSQED---QESELRKALERPILVDDTDALWERLKGSRAKRVDYVLDNAGFELV 177

Query: 228 LGILPFARELLR--RGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVD 280
             +L  A ELLR    T+V+L    +P +NDVT  +   ++ +L D      G+D
Sbjct: 178 FDLL-LAEELLRSGLATKVVLHVKGIPFVNDVTMEDAEWLLEQLADHSALGAGLD 231

This family has no known function. Length = 315

>gnl\|CDD\|215489 PLN02902, PLN02902, pantothenate kinase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		310
PLN02902		876	pantothenate kinase	100.0
KOG4584		348	consensus Uncharacterized conserved protein [Gener	100.0
COG1578		285	Uncharacterized conserved protein [Function unknow	100.0
PF01937		355	DUF89: Protein of unknown function DUF89; InterPro	100.0
KOG3870		434	consensus Uncharacterized conserved protein [Funct	99.52

>PLN02902 pantothenate kinase	Back alignment and domain information

Probab=100.00  E-value=1.9e-66  Score=535.97  Aligned_cols=293  Identities=34%  Similarity=0.576  Sum_probs=264.9

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHHhhhcHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHH
Q 021582            4 ESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESD-PTVPDAHVRAEKFAQRYSE   82 (310)
Q Consensus         4 ~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~ci~c~~~qa~~~-~~~~~~~~~~~~~~~~~~~   82 (310)
                      +++++|||||.||.  +|.|||+||.  +.++|      +||++||.+++|.|.+||... +..+|+.+|+++|.++|.+
T Consensus       494 ~~~l~~~pLL~~~~--~Y~p~t~d~~--d~~~r------~yW~~~f~~~i~~~~~~A~~sq~~~~da~~ra~~F~~~y~~  563 (876)
T PLN02902        494 VPTLEVFPLLADPK--TYEPNTIDLS--DQSER------EYWFKVLSEHLPDLVDKAVASEGGTDDAKRRGDAFARAFSA  563 (876)
T ss_pred             ccccccccccCCCC--CCCCCcccCC--ccHHH------HHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            56799999999998  9999999995  22244      599999999999999999865 5778999999999999999


Q ss_pred             HHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHh
Q 021582           83 ILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAG  162 (310)
Q Consensus        83 ~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaG  162 (310)
                      +|++++++|.+||.+.. +.+++++|+|++.+|++|||+++|+++|+.|++++|.++++++++. +++||.+++|+++||
T Consensus       564 ~L~~l~~~p~a~G~~~~-~~Ll~~rE~~Lre~Gf~DPY~~vK~~eN~~AL~llp~l~~~ld~~~-~edrL~~aVk~aiAG  641 (876)
T PLN02902        564 HLARLMEEPAAYGKLGL-ANLLELREECLREFHFVDAYRSIKQRENEASLAVLPDLLAELDSMT-EETRLLTLIEGVLAA  641 (876)
T ss_pred             HHHHHHhCccccCCchH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHH
Confidence            99999999999999875 8999999999999999999999999999999999999999998766 468999999999999


Q ss_pred             hhhhhcchhhhhhhccC-cccHHHHHhhhcCCCCCCCCHHHHHHHhcc------cCCCeEEEEecCCCcchhcchHHHHH
Q 021582          163 NIFDLGSAQLAEVFSKD-GMSFLASCQNLVPRPWVIDDLETFKVKWSK------KAWKKAVIFVDNSGADIILGILPFAR  235 (310)
Q Consensus       163 N~iD~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~------~~~k~ilyl~DNaGediVfD~Lpli~  235 (310)
                      |+||||++..+++++.+ .+++++.+++++++||.+||++.|+++|.+      .+||+++||+||||+|||||+|||||
T Consensus       642 NifD~Ga~~~v~l~~~~~~~~~~~~~~~~~~rpw~iDD~d~f~erL~~~~~~~~~~~KkvLyf~DNAGaEIVLD~LpLiR  721 (876)
T PLN02902        642 NIFDWGSRACVELYHKGTIIEIYRMSRNKMQRPWRVDDFDAFKERMLGSGGKKPKPHKRALLFVDNSGADVVLGMLPLAR  721 (876)
T ss_pred             hhhhhhhhhhhhhccccchhhHHHHHHHhhcCCCccCCHHHHHHHHhhcccccCCCccEEEEEecCCCCceecChHHHHH
Confidence            99999998776666554 367899999999999999999999999974      36899999999999779999999999


Q ss_pred             HHHhCCCEEEEEecCCCccccCChHHHHHHHHHhhhhhhhcc-----C---------ccc--------cceEEecCCCCC
Q 021582          236 ELLRRGTQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLM-----G---------VDT--------SKLLIANSGNDL  293 (310)
Q Consensus       236 ~L~~~g~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~-----g---------l~~--------~~~~Vi~sG~~~  293 (310)
                      +|+++|++|+++||+.|+|||||++|+..+++.++..|+.++     |         +++        ++++||+||+++
T Consensus       722 ELl~rgtkV~lavng~PiINDvT~eDl~~~~~~~a~~~~~l~~A~~aG~~~~~~~~~ld~~~~~~~~~~~l~VV~SG~~s  801 (876)
T PLN02902        722 ELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLLVDAMVNTDDGSKDDSTSVPLMVVENGCGS  801 (876)
T ss_pred             HHHHcCCEEEEEECCCCchhhhhHHHHHHHHHHHhhcccHHHHHHHhcccccccccccccccccccccceEEEEcCCCCC
Confidence            999999999999999999999999999999999888887764     2         332        368999999999


Q ss_pred             CCCChhhhcHHHHhh
Q 021582          294 PVRNGSAAFYFLKSL  308 (310)
Q Consensus       294 pg~~l~~~s~~~~~~  308 (310)
                      ||+||+++|++|++.
T Consensus       802 PGidL~rvS~E~~~a  816 (876)
T PLN02902        802 PCIDLRQVSSELAAA  816 (876)
T ss_pred             CCcChHHCCHHHHHH
Confidence            999999999888764

>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>COG1578 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01937 DUF89: Protein of unknown function DUF89; InterPro: IPR002791 This entry contains uncharacterised proteins	Back alignment and domain information

>KOG3870 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		310
1xfi_A		367	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-136

>pdb|1XFI|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g17340 Length = 367

Back alignment and structure

Iteration: 1

Score = 481 bits (1239), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/294 (79%), Positives = 259/294 (88%) Query: 2 ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAE 61 ES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T EI+W+++F NSIPSFKKRAE Sbjct: 2 ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAE 61 Query: 62 SDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121 SD TVPDA RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFK Sbjct: 62 SDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFK 121 Query: 122 KVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGM 181 KVKDEENAKAISLF VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGM Sbjct: 122 KVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGM 181 Query: 182 SFLASCQNLVPRPWVIDDLETFXXXXXXXXXXXXXIFVDNSGADIILGILPFARELLRRG 241 SFLASCQNLVPRPWVIDDLE F IFVDNSGADIILGILPFARELLRRG Sbjct: 182 SFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG 241 Query: 242 TQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295 QV+LAAN+LPSIND+T EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPV Sbjct: 242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPV 295

PyMOL of 1xfi

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		310
1xfi_A		367	Unknown protein; structural genomics, protein stru	1e-105
2ffj_A		300	Conserved hypothetical protein; structural genomic	8e-39
2g8l_A		299	287AA long hypothetical protein; structural genomi	2e-36
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A Length = 367	Back alignment and structure

 Score =  311 bits (797), Expect = e-105
 Identities = 243/294 (82%), Positives = 269/294 (91%)

Query: 2   ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAE 61
           ES+SE+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAE
Sbjct: 2   ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAE 61

Query: 62  SDPTVPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFK 121
           SD TVPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFK
Sbjct: 62  SDITVPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFK 121

Query: 122 KVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGM 181
           KVKDEENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGM
Sbjct: 122 KVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGM 181

Query: 182 SFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG 241
           SFLASCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG
Sbjct: 182 SFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG 241

Query: 242 TQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295
            QV+LAAN+LPSIND+T  EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPV
Sbjct: 242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPV 295

PyMOL of 1xfi

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1 Length = 300	Back alignment and structure

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1 Length = 299	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		310
1xfi_A		367	Unknown protein; structural genomics, protein stru	100.0
2g8l_A		299	287AA long hypothetical protein; structural genomi	100.0
2ffj_A		300	Conserved hypothetical protein; structural genomic	100.0
3pt1_A		471	UPF0364 protein YMR027W; alpha/beta fold, carbohyd	99.82

>1xfi_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2G17340, center for eukaryotic structural genomics; 1.70A {Arabidopsis thaliana} SCOP: e.50.1.1 PDB: 2q40_A	Back alignment and structure

Probab=100.00  E-value=7.5e-66  Score=498.08  Aligned_cols=306  Identities=80%  Similarity=1.251  Sum_probs=267.1

Q ss_pred             CCCCCCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHHhhhcHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 021582            2 ESESELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYS   81 (310)
Q Consensus         2 ~~~~~~~~~pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~ci~c~~~qa~~~~~~~~~~~~~~~~~~~~~   81 (310)
                      +|++++++||||.||.+.+|.|||+||.+|+++.+.+++++.||++||.++++.|.++|...+..+++.+|+++|.++|.
T Consensus         2 ~~~~~~~~~pll~~~~~~~y~p~t~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~a~~~~~~~~a~~ra~~f~~~~~   81 (367)
T 1xfi_A            2 ESDSEMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYA   81 (367)
T ss_dssp             ----CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHH
T ss_pred             CCccccccCcccCCccccCCCCCccCCCCCcccccccHHHHHHHHHHHHHhhHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence            57889999999999944499999999999988888888999999999999999999999977878899999999999999


Q ss_pred             HHHHhccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHH
Q 021582           82 EILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFA  161 (310)
Q Consensus        82 ~~L~~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~ala  161 (310)
                      ++|..++++|..||.|+..|+++++++++++++|+.|||+++|+++|+.|+++++.+.+.+++++.+.+++.+++++++|
T Consensus        82 ~~l~~l~~~p~~~g~~~~~r~~~~~~~~il~~~g~~DPf~~~K~~~n~~al~~l~~l~~~l~~~~~~~~~l~~llr~al~  161 (367)
T 1xfi_A           82 GILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFA  161 (367)
T ss_dssp             HHHHHHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhCccccCCcchHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            99999999999999965459999999999999999999999999999999999999999998776667899999999999


Q ss_pred             hhhhhhcchhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcchHHHHHHHHhCC
Q 021582          162 GNIFDLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRG  241 (310)
Q Consensus       162 GN~iD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD~Lpli~~L~~~g  241 (310)
                      ||+||||+....+.++.+++++++.++++.+++|.+||++.|+++|.+.++++|+||+||||+|||||+||||++|+++|
T Consensus       162 GN~~Dlg~~~~~~~~~~~~~~~~~~~~~~~~~~~lvdd~~~l~~~L~~~~~k~Vl~v~DNAG~Eiv~D~L~La~~Ll~~g  241 (367)
T 1xfi_A          162 GNIFDLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRG  241 (367)
T ss_dssp             HHHC---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTHHHHHTHHHHHHHHHHTT
T ss_pred             HhccccccccccccccccCCCHHHHHHHhhccCCCcCCHHHHHHHhcccCCCEEEEEecCCCchhhccHHHHHHHHHHcC
Confidence            99999998764333333357889999998899999999999999998756799999999999669999767999999999


Q ss_pred             CEEEEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCCCCChhhhcHHHHh
Q 021582          242 TQVILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKS  307 (310)
Q Consensus       242 ~~V~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~pg~~l~~~s~~~~~  307 (310)
                      ++|+++||++|++||||++|+..+|+.++++++.|+.++++.+.||+||+.+||+++.++|++|.+
T Consensus       242 ~kVvl~vK~~P~vnDvT~~D~~~~L~~l~~~~~~L~~l~~g~l~vi~~G~~~~~~~l~~~s~el~~  307 (367)
T 1xfi_A          242 AQVVLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAY  307 (367)
T ss_dssp             CEEEEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHH
T ss_pred             CEEEEEECCcCceeeCCHHHHHHHHHHHHhcchhhhhhccCcEEEEcCCCCCCCcChHHCCHHHHH
Confidence            999999999999999999999999999878888888899999999999999999999999977764

PyMOL of 1xfi

>2g8l_A 287AA long hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.04A {Pyrococcus horikoshii} SCOP: e.50.1.1	Back alignment and structure

>2ffj_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.45A {Archaeoglobus fulgidus} SCOP: e.50.1.1	Back alignment and structure

>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		310
d1xfia_		360	e.50.1.1 (A:) Hypothetical protein At2g17340 {Thal	1e-124
d2ffja1		282	e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Ar	1e-28
d2g8la1		284	e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Py	1e-24

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 360	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  357 bits (918), Expect = e-124
 Identities = 240/290 (82%), Positives = 265/290 (91%)

Query: 6   ELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPT 65
           E+VPFP LP PIE NYRACTIPYRFP+D+PKK T  EI+W+++F NSIPSFKKRAESD T
Sbjct: 1   EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDIT 60

Query: 66  VPDAHVRAEKFAQRYSEILEDMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKD 125
           VPDA  RAEKFA+RY+ ILED+KKDPE+HGGPPD ILLCRLREQVLRELGFRDIFKKVKD
Sbjct: 61  VPDAPARAEKFAERYAGILEDLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKD 120

Query: 126 EENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIFDLGSAQLAEVFSKDGMSFLA 185
           EENAKAISLF  VV L+D IED+GKR+E+L+RGIFAGNIFDLGSAQLAEVFS+DGMSFLA
Sbjct: 121 EENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIFDLGSAQLAEVFSRDGMSFLA 180

Query: 186 SCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILGILPFARELLRRGTQVI 245
           SCQNLVPRPWVIDDLE F+ KW  K+WKKAVIFVDNSGADIILGILPFARELLRRG QV+
Sbjct: 181 SCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGADIILGILPFARELLRRGAQVV 240

Query: 246 LAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPV 295
           LAAN+LPSIND+T  EL EI+S+LKDE GQL+GVDTSKLLIANSGNDLPV
Sbjct: 241 LAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPV 290

PyMOL of d1xfia_

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 282	Back information, alignment and structure

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		310
d1xfia_		360	Hypothetical protein At2g17340 {Thale cress (Arabi	100.0
d2g8la1		284	Hypothetical protein PH1575 {Pyrococcus horikoshii	100.0
d2ffja1		282	Hypothetical protein AF1104 {Archaeoglobus fulgidu	100.0
d1d7ya2		121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.82
d1nhpa2		123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.35

>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: AF1104-like
superfamily: AF1104-like
family: AF1104-like
domain: Hypothetical protein At2g17340
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-76  Score=563.26  Aligned_cols=302  Identities=79%  Similarity=1.233  Sum_probs=270.9

Q ss_pred             CCcCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcchhhHHHHhhhcHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 021582            6 ELVPFPLLPTPIETNYRACTIPYRFPTDNPKKPTRTEIAWLDLFLNSIPSFKKRAESDPTVPDAHVRAEKFAQRYSEILE   85 (310)
Q Consensus         6 ~~~~~pll~~~~~~~y~p~t~d~~~~~~~~~~~~~~~~~w~~~~~~ci~c~~~qa~~~~~~~~~~~~~~~~~~~~~~~L~   85 (310)
                      +|||||||+||.+++|.|||++|.+|+++.+.++|++.||++||.++++.|.+||.+++..+|+++|+++|.++|.++|.
T Consensus         1 ~~v~~pll~~~~~~~y~~~tv~~~~~~~~~~~~~~~~~~Wl~~f~~~i~~~~~~A~s~~~~~da~~Ra~~f~~~y~~~L~   80 (360)
T d1xfia_           1 EMVPFPQLPMPIENNYRACTIPYRFPSDDPKKATPNEISWINVFANSIPSFKKRAESDITVPDAPARAEKFAERYAGILE   80 (360)
T ss_dssp             CCBCCTTSCSCCTTTCCSBCSCCCCTTSCTTSCCHHHHHHHHHHHTTHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccCCccccCccCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            58999999999887999999999999999888899999999999999999999999888999999999999999999999


Q ss_pred             hccCCCCCCCCChhHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHhhhh
Q 021582           86 DMKKDPETHGGPPDCILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFGDVVRLNDVIEDEGKRVESLIRGIFAGNIF  165 (310)
Q Consensus        86 ~l~~~p~~~~~~~~~r~~~~l~~~~~~~~g~~DPy~~~K~~~N~~Al~~~~~l~~~ld~~~~~~d~l~~alr~alaGN~i  165 (310)
                      +++++|.+||+++.+.++.+++|++++.+|++|||+++|+++|+.|++++|.+++.++++.++.++|.+++++++|||+|
T Consensus        81 ~l~~~p~~~g~~~~~~ll~~~re~~Lr~~Gf~DpY~~~K~~eN~~Al~~lp~~~~~id~i~d~~~~l~~~vr~aiAGNif  160 (360)
T d1xfia_          81 DLKKDPESHGGPPDGILLCRLREQVLRELGFRDIFKKVKDEENAKAISLFPQVVSLSDAIEDDGKRLENLVRGIFAGNIF  160 (360)
T ss_dssp             HHHHCTTGGGCSCCHHHHHHHHHHHHHHTTCSCTTHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCcccCcccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhh
Confidence            99999999999998556779999999999999999999999999999999999999999888788999999999999999


Q ss_pred             hhcchhhhhhhccCcccHHHHHhhhcCCCCCCCCHHHHHHHhcccCCCeEEEEecCCCcchhcc-hHHHHHHHHhCCCEE
Q 021582          166 DLGSAQLAEVFSKDGMSFLASCQNLVPRPWVIDDLETFKVKWSKKAWKKAVIFVDNSGADIILG-ILPFARELLRRGTQV  244 (310)
Q Consensus       166 D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dd~~~~~~~L~~~~~k~ilyl~DNaGediVfD-~Lpli~~L~~~g~~V  244 (310)
                      |||++..+++++.++++|++.++++.++||.+||++.|.+++.+.+||+++||+||||| +||| +||++++|+++|++|
T Consensus       161 D~Ga~~~~~~~~~~~~~~~~~~~~~~~rp~~vDd~d~~~~rl~~~~~k~vly~~DNaGe-~Vfd~lL~~~rell~~g~~V  239 (360)
T d1xfia_         161 DLGSAQLAEVFSRDGMSFLASCQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSGA-DIILGILPFARELLRRGAQV  239 (360)
T ss_dssp             ---------------CCHHHHTTCSCCSSCSEECHHHHHHHHTTTCCCEEEEECCBTTH-HHHHTHHHHHHHHHHTTCEE
T ss_pred             hcccccchhhhccccchHHHHHHHhhcCCCccccHHHHHHHHhcCCcceEEEEecCCch-HHHHHHHHHHHHHhcCCCeE
Confidence            99999887888777899999999999999999999999999987779999999999999 6655 456799999999999


Q ss_pred             EEEecCCCccccCChHHHHHHHHHhhhhhhhccCccccceEEecCCCCCCCCChhhhcHHHHhh
Q 021582          245 ILAANDLPSINDVTYPELIEIMSKLKDEKGQLMGVDTSKLLIANSGNDLPVRNGSAAFYFLKSL  308 (310)
Q Consensus       245 ~l~vk~~P~lNDaT~~d~~~~l~~~a~~~~~l~gl~~~~~~Vi~sG~~~pg~~l~~~s~~~~~~  308 (310)
                      +++|||+|+|||||++|+..++..++..|+.++|++++.++||+||+++||++|+++|++|+..
T Consensus       240 ~l~v~~~PilNDvT~~El~~~~~~~~~~~~~~~gld~~~~~Vv~sG~~~Pg~dL~~~s~E~~~~  303 (360)
T d1xfia_         240 VLAANELPSINDITCTELTEILSQLKDENGQLLGVDTSKLLIANSGNDLPVIDLSRVSQELAYL  303 (360)
T ss_dssp             EEEEBSSCCTTBCBHHHHHHHHHHHC--CCEETTEECTTEEEEECCCCSSSCCTTSBCHHHHHH
T ss_pred             EEEECCCcchhhhhHHHHHHHHHHHhhhhhHhhhhcccceEEecCCCCCCCcChHhCCHHHHHH
Confidence            9999999999999999999999999999999999999899999999999999999999888753

PyMOL of d1xfia_

>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2ffja1 e.50.1.1 (A:7-288) Hypothetical protein AF1104 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}	Back information, alignment and structure

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure