Citrus Sinensis ID: 021589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRWS
Secondary Structure (PSIPRED)
cccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHcccccccccccccHHHHHcccccccEEEEEccccccccccEEEEEcccccccccEEEEEEccEEEEEEEEEccccccccccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccHHHHHHHcccccccHccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHccHHHHHcEEEEEEccHHHHHHHHHHHcccccccccccccEEEccccccccEEEcccHHHccccccEEEEEHHHHHccccHEEEEccccEEEEEEEEccccccEEEEEEccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
mqlrklslqpssplrvlsskypfpllqkwsrfssssssesqipnshsveplddnrsehaSTAIsidrsglynppehsherKLESELVKHLKGIIKFRGGPISVAEYMEEVltnpkagfyinrdvfgaegdfitspevSQMFGEMVGVWAMCLWEqmgqpnrvnlvelgpgrgtLMADLLRGASKFKNFTESLHIHLVecsptlqklqhhnlkcmdennandnveertisslagtpvswhaaleqvpsgfptIIVAHEFydalpvhqfqkttRGWCEKLVDIAedssaasglqiknwrsLSTLRFVQKRWS
Flexible Loop (DISEMBL)
mqlrklslqpssplrvlssKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSsaasglqiknwrslstlrfvqkrws
Low Complexity Region (SEG)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWsrfssssssesqipnshsVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRWS
Disordered region (IsUnstruct)
*************************************************************************************LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM*************ISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFV*****
Disordered Region (DISOPRED)
****************************************************************************************HLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQ****
Disordered Region (DISEMBL)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWS****************************ASTAISIDRSGLY**********LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRWS
Disordered Region (DISPRO)
****K**LQPSSPLRVLSSKYPFPLLQKW*****************************************************ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRW*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q54S83	484	NADH dehydrogenase [ubiqu	yes	no	0.783	0.502	0.423	3e-56
Q9VGR2	437	NADH dehydrogenase [ubiqu	yes	no	0.680	0.482	0.48	6e-51
Q08BY0	422	NADH dehydrogenase [ubiqu	yes	no	0.712	0.523	0.431	4e-49
Q6GQ37	437	NADH dehydrogenase [ubiqu	N/A	no	0.658	0.466	0.462	4e-47
Q5BKM6	430	NADH dehydrogenase [ubiqu	yes	no	0.622	0.448	0.487	6e-47
Q9CWG8	436	NADH dehydrogenase [ubiqu	yes	no	0.7	0.497	0.453	1e-46
Q2KHV5	441	NADH dehydrogenase [ubiqu	yes	no	0.645	0.453	0.480	2e-46
Q7L592	441	NADH dehydrogenase [ubiqu	yes	no	0.629	0.442	0.463	6e-46
Q5XI79	436	NADH dehydrogenase [ubiqu	yes	no	0.709	0.504	0.449	5e-45
Q09644	426	NADH dehydrogenase [ubiqu	yes	no	0.641	0.467	0.397	7e-37

>sp|Q54S83|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Dictyostelium discoideum GN=midA PE=1 SV=1

 Score =  219 bits (557), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/262 (42%), Positives = 161/262 (61%), Gaps = 19/262 (7%)

Query: 32  FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
           F ++S S +   N + ++   D   EH   A        +S D+SGL   P+   + +  
Sbjct: 28  FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84

Query: 84  --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+N+DVFG  GDFIT+PEVSQ+F
Sbjct: 85  PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
           GEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR    FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203

Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSL-AGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +K Q  NL    +     N + +TI     G  V+W   LE+VP+  PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261

Query: 261 ALPVH--QFQKTTRGWCEKLVD 280
           ALP+H  +F +    WCE LVD
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVD 283

Involved in mitochondrial function. Cells lacking midA have lower levels of ATP and no glycogen.
Dictyostelium discoideum (taxid: 44689)

>sp|Q9VGR2|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/225 (48%), Positives = 141/225 (62%), Gaps = 14/225 (6%)

Query: 72  NPPEHSHERKLESE-----LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
            PP+   E   ++E     L K L+  I    GPI VAEYM EVLTNP+AG+Y+NRDVFG
Sbjct: 33  EPPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFG 91

Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
            EGDFITSPE+SQ+FGE+VG+W +  W +MG P+   LVELGPGRGTL  D+L+  +KFK
Sbjct: 92  REGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFK 151

Query: 187 NFTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAAL 242
              E   +H+VE SP L K Q        + + E+    + +E T +S  GT   WH  L
Sbjct: 152 QDAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRL 208

Query: 243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSA 287
           E VP GF ++++AHEF+DALPVH+ Q     W E L+D+A    A
Sbjct: 209 EDVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSDGA 252

Drosophila melanogaster (taxid: 7227)

>sp|Q08BY0|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Danio rerio GN=ndufaf7 PE=2 SV=1

 Score =  195 bits (495), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 100/232 (43%), Positives = 146/232 (62%), Gaps = 11/232 (4%)

Query: 82  LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
           +   ++KHL   I    GPISVAEYM E LTNP  G+Y+  D+ GA GDFITSPE+SQ+F
Sbjct: 26  INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT--ESLHIHLVEC 199
           GE++GVW +  W   G+ + + LVELGPGRG+L +D+LR  S+ K       + IHLVE 
Sbjct: 85  GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144

Query: 200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
           SP L ++Q    +C+  N      N++   R+ ++  G P+ W+ ++E VP GF +I +A
Sbjct: 145 SPKLSQVQA---ECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200

Query: 256 HEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQK 307
           HEF+DALP+H+FQ+T  GW E LVDI  ++       + +  +L++   +QK
Sbjct: 201 HEFFDALPIHKFQRTENGWREVLVDIDPENPGKLRFVVSHRPTLASSTLIQK 252

Danio rerio (taxid: 7955)

>sp|Q6GQ37|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1

 Score =  188 bits (478), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/212 (46%), Positives = 136/212 (64%), Gaps = 8/212 (3%)

Query: 75  EHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITS 134
           E   +R   + L+ HL   IK   GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+TS
Sbjct: 35  EKPQKRTSANALLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVTS 93

Query: 135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--L 192
           PE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F    +S  +
Sbjct: 94  PEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCDI 153

Query: 193 HIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGF 249
            +HLVE SP L  +Q   L  K ++ E ++N  V +  I+   G PV W+  ++ VP+G+
Sbjct: 154 SVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNGY 212

Query: 250 PTIIVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
            +  +AHEF+DALP+H+ QK   GW E L+DI
Sbjct: 213 -SFYIAHEFFDALPIHKLQKIKDGWREMLIDI 243

Xenopus laevis (taxid: 8355)

>sp|Q5BKM6|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1

 Score =  188 bits (477), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 132/201 (65%), Gaps = 8/201 (3%)

Query: 86  LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMV 145
           L+ HL   IK   GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+TSPE+SQ+FGE++
Sbjct: 43  LLNHLIFKIK-STGPITVSEYMREVLTNPVKGYYMHHDMLGEHGDFVTSPELSQIFGELL 101

Query: 146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSPTL 203
           GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F     S  + +HLVE SP L
Sbjct: 102 GVWCISEWMSAGKPKSLQLVELGPGRGTLTDDLLRVFSNFGRLLNSCDISVHLVEVSPKL 161

Query: 204 QKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +Q   L  K ++ E + N  V ++ I+   G PV W+  ++ VP+GF +  +AHEF+D
Sbjct: 162 SDIQAQRLTGKAIEVELDKNSPVYKKGITK-TGFPVCWYQDIQDVPTGF-SFYIAHEFFD 219

Query: 261 ALPVHQFQKTTRGWCEKLVDI 281
           ALP+H+ QKT  GW E L+DI
Sbjct: 220 ALPIHKLQKTKDGWREILIDI 240

Xenopus tropicalis (taxid: 8364)

>sp|Q9CWG8|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus musculus GN=Ndufaf7 PE=2 SV=4

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/225 (45%), Positives = 143/225 (63%), Gaps = 8/225 (3%)

Query: 67  RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
           R   Y+      E    + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+++D+ G
Sbjct: 19  RGKCYSSGNEPAESNQVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVHQDMLG 77

Query: 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
            +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  
Sbjct: 78  EKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLG 137

Query: 187 NF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
           +   T ++ IHLVE S  L ++Q   L   K   E +A   V  + ++  +G PVSW+  
Sbjct: 138 SVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWYRD 196

Query: 242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
           L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E  VD+   +S
Sbjct: 197 LKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQAS 240

Mus musculus (taxid: 10090)

>sp|Q2KHV5|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos taurus GN=NDUFAF7 PE=2 SV=2

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 79  ERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVS 138
           E    + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+S
Sbjct: 36  ENNTVTPMLRHLIYKIK-STGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEIS 94

Query: 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHI--HL 196
           QMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  I  HL
Sbjct: 95  QMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLHL 154

Query: 197 VECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTII 253
           VE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  L+ VP  + +  
Sbjct: 155 VEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SFY 212

Query: 254 VAHEFYDALPVHQFQKTTRGWCEKLVDI 281
           +AHEF+D LPVH+FQKT  GW E LVDI
Sbjct: 213 LAHEFFDVLPVHKFQKTPHGWREVLVDI 240

Bos taurus (taxid: 9913)

>sp|Q7L592|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1

 Score =  184 bits (468), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/203 (46%), Positives = 134/203 (66%), Gaps = 8/203 (3%)

Query: 84  SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGE 143
           + +++HL   IK   GPI+VAEYM+EVLTNP  G+Y+ RD+ G +GDFITSPE+SQ+FGE
Sbjct: 41  TPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKGYYVYRDMLGEKGDFITSPEISQIFGE 99

Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIHLVECSP 201
           ++G+W +  W   G+     LVELGPGRGTL+ D+LR  ++  +  ++  + +HLVE S 
Sbjct: 100 LLGIWFISEWMATGKSTAFQLVELGPGRGTLVGDILRVFTQLGSVLKNCDISVHLVEVSQ 159

Query: 202 TLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEF 258
            L ++Q   L   K   E NA   V  + ++  +G P+SW+  L  VP G+ +  +AHEF
Sbjct: 160 KLSEIQALTLTKEKVPLERNAGSPVYMKGVTK-SGIPISWYRDLHDVPKGY-SFYLAHEF 217

Query: 259 YDALPVHQFQKTTRGWCEKLVDI 281
           +D LPVH+FQKT +GW E  VDI
Sbjct: 218 FDVLPVHKFQKTPQGWREVFVDI 240

Homo sapiens (taxid: 9606)

>sp|Q5XI79|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 142/229 (62%), Gaps = 9/229 (3%)

Query: 59  ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
           A T I SI R   ++      E    + +++HL   IK   GPI+VAEYM+EVLTNP  G
Sbjct: 10  ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIK-STGPITVAEYMKEVLTNPAKG 68

Query: 118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
           +Y++ D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD
Sbjct: 69  YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128

Query: 178 LLRGASKFKNF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLA 232
           +LR  S+  +   T  + IHLVE S  L ++Q   L       E +A   V  + ++  +
Sbjct: 129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187

Query: 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
           G P+SW+  L+ VP+G+ +  +AHEF+D LPVH+FQKT  GW E  VDI
Sbjct: 188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDI 235

Rattus norvegicus (taxid: 10116)

>sp|Q09644|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 119/209 (56%), Gaps = 10/209 (4%)

Query: 85  ELVKHLKGII--KFR-GGPISVAEYMEEVLTNPKAGFY----INRDVFGAEGDFITSPEV 137
           E   HLK  +  K R  GPI+VAEYM+  ++ P  G+Y     ++ VFGA+GDFITSPE+
Sbjct: 30  EKTNHLKKFLVDKIRVSGPITVAEYMKTCVSAPLVGYYGQFSKDQKVFGAKGDFITSPEL 89

Query: 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197
           +Q+FGEM+GVW        G      LVELGPGR  LM D+L   +KF +  + + +HLV
Sbjct: 90  TQLFGEMIGVWVFHELANTGHKGSWQLVELGPGRAQLMNDVLNALAKFND--KDVSVHLV 147

Query: 198 ECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHE 257
           E S  L   Q  +L      N+ D    R   +  G  + W+ +++ +P GF T+ + +E
Sbjct: 148 ETSDALIDEQEKSLCIYTSKNSIDTPFIRKNKTRTGVNIYWYKSIDDIPDGF-TVFIGNE 206

Query: 258 FYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
           F DALP+HQF K+   W E  V++ +D  
Sbjct: 207 FLDALPIHQFHKSGDSWNEVYVNLTKDGD 235

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
255552842	490	conserved hypothetical protein [Ricinus	0.787	0.497	0.816	1e-119
225452686	483	PREDICTED: protein midA, mitochondrial [	0.783	0.503	0.819	1e-118
357473955	449	MidA-like protein [Medicago truncatula]	0.764	0.527	0.789	1e-112
217074438	449	unknown [Medicago truncatula]	0.764	0.527	0.784	1e-112
449461913	493	PREDICTED: protein midA, mitochondrial-l	0.793	0.498	0.759	1e-112
449505855	493	PREDICTED: protein midA, mitochondrial-l	0.793	0.498	0.759	1e-112
356538547	464	PREDICTED: protein midA, mitochondrial-l	0.732	0.489	0.828	1e-111
42565270	471	uncharacterized protein [Arabidopsis tha	0.725	0.477	0.807	1e-110
334185683	471	uncharacterized protein [Arabidopsis tha	0.725	0.477	0.807	1e-110
297815160	471	hypothetical protein ARALYDRAFT_905140 [	0.725	0.477	0.803	1e-110

>gi|255552842|ref|XP_002517464.1| conserved hypothetical protein [Ricinus communis] gi|223543475|gb|EEF45006.1| conserved hypothetical protein [Ricinus communis]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 200/245 (81%), Positives = 225/245 (91%), Gaps = 1/245 (0%)

Query: 41  QIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGP 100
           +IP+S+ VE L+DN  + +ST +S+DRSGLYNPPEHSHE   ESEL KHLKGIIKFRGGP
Sbjct: 49  EIPHSNLVEQLEDNNVQ-SSTTVSVDRSGLYNPPEHSHEPNSESELFKHLKGIIKFRGGP 107

Query: 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           I+VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWA+CLWEQM QP 
Sbjct: 108 ITVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWALCLWEQMEQPK 167

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
            VNLVELGPGRGTLMADLLRGASKFK+FTESLHIH+VECSP LQKLQHHNLKC+D+NN+ 
Sbjct: 168 SVNLVELGPGRGTLMADLLRGASKFKSFTESLHIHMVECSPALQKLQHHNLKCVDDNNSC 227

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
            + EERTIS+LAGTP+SWH +LEQVP+G PTII+AHEFYDALPVHQFQ+ +RGWCEK+VD
Sbjct: 228 GSGEERTISTLAGTPISWHTSLEQVPTGSPTIIIAHEFYDALPVHQFQRASRGWCEKMVD 287

Query: 281 IAEDS 285
           +AEDS
Sbjct: 288 VAEDS 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452686|ref|XP_002276826.1| PREDICTED: protein midA, mitochondrial [Vitis vinifera] gi|296087782|emb|CBI35038.3| unnamed protein product [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/244 (81%), Positives = 220/244 (90%), Gaps = 1/244 (0%)

Query: 43  PNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPIS 102
           P   S+E LDD  S+ A++ ISIDRS LYNPPEHSHE   +SELVKHLKGIIKFRGGPIS
Sbjct: 44  PPITSLEHLDDGPSQ-ATSKISIDRSALYNPPEHSHEHSSDSELVKHLKGIIKFRGGPIS 102

Query: 103 VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV 162
           VAEYMEEVLTNPKAGFYINRDVFG EGDFITSPEVSQMFGEM+GVW MCLWEQMGQP++V
Sbjct: 103 VAEYMEEVLTNPKAGFYINRDVFGTEGDFITSPEVSQMFGEMIGVWVMCLWEQMGQPSKV 162

Query: 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN 222
           NLVELGPGRGTLMADLLRG SKFKNF ESL IH+VECSPTLQKLQH NLKC+DE++ N N
Sbjct: 163 NLVELGPGRGTLMADLLRGTSKFKNFIESLQIHMVECSPTLQKLQHKNLKCVDEDSHNGN 222

Query: 223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA 282
           V++RTIS L GTPVSWHAALEQVPSG PTII+AHEFYDALPVHQFQ+ +RGWCEK++D+A
Sbjct: 223 VDKRTISMLTGTPVSWHAALEQVPSGLPTIIIAHEFYDALPVHQFQRASRGWCEKMIDVA 282

Query: 283 EDSS 286
           EDSS
Sbjct: 283 EDSS 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473955|ref|XP_003607262.1| MidA-like protein [Medicago truncatula] gi|355508317|gb|AES89459.1| MidA-like protein [Medicago truncatula]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/237 (78%), Positives = 211/237 (89%)

Query: 50  PLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEE 109
           P+      ++S+ ISIDRS L+NPPEHSH+   +SELVKHLKGIIKFRGGPIS+ EYM E
Sbjct: 16  PITAASCHYSSSTISIDRSSLHNPPEHSHQPISDSELVKHLKGIIKFRGGPISLGEYMSE 75

Query: 110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGP 169
           VLTNPKAG+YINRDVFGA+GDFITSPEVSQMFGEMVGVW MCLWEQMG+P RVNLVELGP
Sbjct: 76  VLTNPKAGYYINRDVFGAQGDFITSPEVSQMFGEMVGVWVMCLWEQMGRPERVNLVELGP 135

Query: 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTIS 229
           GRGTLMADLLRGASKFKNFTESLH+HLVECSP L+ LQH NLKC+DE NA+ + ++RT+S
Sbjct: 136 GRGTLMADLLRGASKFKNFTESLHVHLVECSPALKTLQHKNLKCVDEENADGDTDKRTVS 195

Query: 230 SLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
           S  GTPVSWHA LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSS
Sbjct: 196 SFVGTPVSWHATLEQVPSGSPTIIIAHEFFDALPVHQFQKGSRGWCEKMVDVAEDSS 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074438|gb|ACJ85579.1| unknown [Medicago truncatula]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 186/237 (78%), Positives = 211/237 (89%)

Query: 50  PLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEE 109
           P+      ++S+ ISIDRS L+NPPEHSH+   +SELVKHLKGIIKFRGGPIS+ EYM E
Sbjct: 16  PITAASCHYSSSTISIDRSSLHNPPEHSHQPISDSELVKHLKGIIKFRGGPISLGEYMSE 75

Query: 110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGP 169
           VLTNPKAG+YINRD+FGA+GDFITSPEVSQMFGEMVGVW MCLWEQMG+P RVNLVELGP
Sbjct: 76  VLTNPKAGYYINRDIFGAQGDFITSPEVSQMFGEMVGVWVMCLWEQMGRPERVNLVELGP 135

Query: 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTIS 229
           GRGTLMADLLRGASKFKNFTESLH+HLVECSP L+ LQH NLKC+DE NA+ + ++RT+S
Sbjct: 136 GRGTLMADLLRGASKFKNFTESLHVHLVECSPALKTLQHKNLKCVDEENADGDTDKRTVS 195

Query: 230 SLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
           S  GTPVSWHA LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSS
Sbjct: 196 SFVGTPVSWHATLEQVPSGSPTIIIAHEFFDALPVHQFQKGSRGWCEKMVDVAEDSS 252

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461913|ref|XP_004148686.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 215/254 (84%), Gaps = 8/254 (3%)

Query: 41  QIPNSHSVEPLDDN--------RSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKG 92
           QIP    V+ L++          SE +++ ISIDRSGL NPPEHSHE   ++ELVKHLKG
Sbjct: 43  QIPEGTVVQHLENEDLLNQRSFSSEPSTSTISIDRSGLCNPPEHSHEPSSDTELVKHLKG 102

Query: 93  IIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152
           IIKFRGGPIS+AEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL
Sbjct: 103 IIKFRGGPISIAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 162

Query: 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212
           WEQMG+P +VNLVELGPGRGTLMADLLRGASK KNFT SLH+H VECSP LQKLQH  LK
Sbjct: 163 WEQMGRPEKVNLVELGPGRGTLMADLLRGASKLKNFTNSLHVHFVECSPALQKLQHSTLK 222

Query: 213 CMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
           C DE N  D VE+ ++S+LAGTPVSWH  LEQVPSG PTII+AHEFYDALPVHQFQ+ +R
Sbjct: 223 CRDEANKADGVEKSSVSTLAGTPVSWHPTLEQVPSGLPTIIIAHEFYDALPVHQFQRASR 282

Query: 273 GWCEKLVDIAEDSS 286
           GW EK+VD+AEDS+
Sbjct: 283 GWSEKMVDVAEDST 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505855|ref|XP_004162586.1| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/254 (75%), Positives = 215/254 (84%), Gaps = 8/254 (3%)

Query: 41  QIPNSHSVEPLDDN--------RSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKG 92
           QIP    V+ L++          SE +++ ISIDRSGL NPPEHSHE   ++ELVKHLKG
Sbjct: 43  QIPEGTVVQHLENEDLLNQRPFSSEPSTSTISIDRSGLCNPPEHSHEPSSDTELVKHLKG 102

Query: 93  IIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152
           IIKFRGGPIS+AEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL
Sbjct: 103 IIKFRGGPISIAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 162

Query: 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212
           WEQMG+P +VNLVELGPGRGTLMADLLRGASK KNFT SLH+H VECSP LQKLQH  LK
Sbjct: 163 WEQMGRPEKVNLVELGPGRGTLMADLLRGASKLKNFTNSLHVHFVECSPALQKLQHSTLK 222

Query: 213 CMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTR 272
           C DE N  D VE+ ++S+LAGTPVSWH  LEQVPSG PTII+AHEFYDALPVHQFQ+ +R
Sbjct: 223 CRDEANKADGVEKSSVSTLAGTPVSWHPTLEQVPSGLPTIIIAHEFYDALPVHQFQRASR 282

Query: 273 GWCEKLVDIAEDSS 286
           GW EK+VD+AEDS+
Sbjct: 283 GWSEKMVDVAEDST 296

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538547|ref|XP_003537764.1| PREDICTED: protein midA, mitochondrial-like [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/227 (82%), Positives = 201/227 (88%)

Query: 60  STAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFY 119
           +  ISIDRS LYNPPEHSH    +SELVKHLKGIIKFRGGPIS+ EYM EVLTNPKAG+Y
Sbjct: 41  AATISIDRSSLYNPPEHSHHPTSDSELVKHLKGIIKFRGGPISLGEYMSEVLTNPKAGYY 100

Query: 120 INRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLL 179
           INRDVFGAEGDFITSPEVSQMFGEMVGVW MCLWEQMGQP  VNLVELGPGRGTLMADLL
Sbjct: 101 INRDVFGAEGDFITSPEVSQMFGEMVGVWVMCLWEQMGQPQGVNLVELGPGRGTLMADLL 160

Query: 180 RGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH 239
           RGASKFKNF ESLH+HLVECSP LQKLQH NLKC DE NA+ + + RT  SL GTPVSWH
Sbjct: 161 RGASKFKNFIESLHVHLVECSPALQKLQHQNLKCTDEENASQDTDTRTARSLFGTPVSWH 220

Query: 240 AALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
           A LEQVPSG PTII+AHEF+DALPVHQFQK +RGWCEK+VD+AEDSS
Sbjct: 221 ATLEQVPSGSPTIIIAHEFFDALPVHQFQKASRGWCEKMVDVAEDSS 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565270|ref|NP_189511.2| uncharacterized protein [Arabidopsis thaliana] gi|95147286|gb|ABF57278.1| At3g28700 [Arabidopsis thaliana] gi|332643957|gb|AEE77478.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/229 (80%), Positives = 205/229 (89%), Gaps = 4/229 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV
Sbjct: 169 DLLRGTSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS 285
            WHA L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS
Sbjct: 225 HWHATLQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDS 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185683|ref|NP_001189995.1| uncharacterized protein [Arabidopsis thaliana] gi|332643958|gb|AEE77479.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/229 (80%), Positives = 205/229 (89%), Gaps = 4/229 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV
Sbjct: 169 DLLRGTSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS 285
            WHA L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS
Sbjct: 225 HWHATLQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDS 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815160|ref|XP_002875463.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata] gi|297321301|gb|EFH51722.1| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/229 (80%), Positives = 206/229 (89%), Gaps = 4/229 (1%)

Query: 57  EHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKA 116
           EH  T IS+DRS LY PP+HSHE   E+ELVKHLK IIKFRGGPISVAEYMEEVLTNPKA
Sbjct: 49  EHPGTTISVDRSSLYTPPDHSHESTPETELVKHLKSIIKFRGGPISVAEYMEEVLTNPKA 108

Query: 117 GFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176
           GFY+NRDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMA
Sbjct: 109 GFYMNRDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMA 168

Query: 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV 236
           DLLRG SKF+NFTESLHIHLVECSP LQKLQH NLKC+DE+    ++E++ ISSLAGTPV
Sbjct: 169 DLLRGTSKFRNFTESLHIHLVECSPALQKLQHQNLKCIDES----SLEKKVISSLAGTPV 224

Query: 237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS 285
            WHA LE+VPSG PT+I+AHEFYDALPVHQFQK++RGWCEK+VD+ EDS
Sbjct: 225 HWHATLEEVPSGVPTLIIAHEFYDALPVHQFQKSSRGWCEKMVDVGEDS 273

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2095527	471	AT3G28700 [Arabidopsis thalian	0.874	0.575	0.704	2.9e-103
DICTYBASE|DDB_G0282615	484	midA "DUF185 family protein" [	0.693	0.444	0.470	4.4e-52
FB|FBgn0037880	437	CG17726 [Drosophila melanogast	0.677	0.480	0.491	5.2e-49
ZFIN|ZDB-GENE-060929-628	422	zgc:153989 "zgc:153989" [Danio	0.712	0.523	0.435	8.8e-47
UNIPROTKB|Q6GQ37	437	ndufaf7 "NADH dehydrogenase [u	0.654	0.464	0.460	1.3e-45
UNIPROTKB|Q5BKM6	430	ndufaf7 "NADH dehydrogenase [u	0.703	0.506	0.449	2.7e-45
UNIPROTKB|F1MJQ5	441	C11H2orf56 "Uncharacterized pr	0.641	0.451	0.473	9.1e-45
UNIPROTKB|Q2KHV5	441	NDUFAF7 "NADH dehydrogenase [u	0.641	0.451	0.473	9.1e-45
MGI|MGI:1920944	436	Ndufaf7 "NADH dehydrogenase (u	0.7	0.497	0.453	9.1e-45
RGD|1311578	436	Ndufaf7 "NADH dehydrogenase (u	0.722	0.513	0.442	1e-43

TAIR|locus:2095527 AT3G28700 [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 200/284 (70%), Positives = 224/284 (78%)

Query:     3 LRKLSLQPSSPLRVLSSKYPFPLLQKWXXXXXXXXXXXXXXXXXXVEPLDDNRS-EHAST 61
             LRKL  Q SS  R+L S  P PL  K                     P  ++ + EH  T
Sbjct:     2 LRKLLTQTSSR-RLLFSGVP-PLFSK------STISPFSSLSSSPEPPSSESPAVEHPGT 53

Query:    62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN 121
              ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKAGFY+N
Sbjct:    54 TISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKAGFYMN 113

Query:   122 RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRG 181
             RDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMADLLRG
Sbjct:   114 RDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMADLLRG 173

Query:   182 ASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241
              SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV WHA 
Sbjct:   174 TSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPVHWHAT 229

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS 285
             L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS
Sbjct:   230 LQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDS 273

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IDA

GO:0015979 "photosynthesis" evidence=RCA

GO:0045333 "cellular respiration" evidence=RCA

DICTYBASE|DDB_G0282615 midA "DUF185 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 105/223 (47%), Positives = 148/223 (66%)

Query:    63 ISIDRSGLYNPPEHSHE-RKLE-SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI 120
             +S D+SGL   P+   + RK   ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+
Sbjct:    64 LSFDKSGLAQFPKQVFKNRKYPITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYM 122

Query:   121 NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLR 180
             N+DVFG  GDFIT+PEVSQ+FGEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR
Sbjct:   123 NKDVFGKGGDFITAPEVSQLFGEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILR 182

Query:   181 GASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA-GTPVSWH 239
                 FK F +S+ +HLVE SP  +K Q  NL    +   N   + +TI     G  V+W 
Sbjct:   183 STKVFKEFYDSISVHLVEASPANKKTQKQNLLYFKDKAIN--FDHKTIGETPNGIKVTWV 240

Query:   240 AALEQVPSGFPTIIVAHEFYDALPVH--QFQKTTRGWCEKLVD 280
               LE+VP+  PT+ +A EF+DALP+H  +F +    WCE LVD
Sbjct:   241 GKLEEVPTDIPTLFLAQEFFDALPIHVFRFSREKNDWCEVLVD 283

GO:0043052 "thermotaxis" evidence=IMP

GO:0042331 "phototaxis" evidence=IMP

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046034 "ATP metabolic process" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0030435 "sporulation resulting in formation of a cellular spore" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0006536 "glutamate metabolic process" evidence=IMP

GO:0005977 "glycogen metabolic process" evidence=IMP

GO:0090141 "positive regulation of mitochondrial fission" evidence=IMP

FB|FBgn0037880 CG17726 [Drosophila melanogaster (taxid:7227)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 110/224 (49%), Positives = 141/224 (62%)

Query:    73 PPEHSHER--KLES---ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGA 127
             PP+   E   K ES    L K L+  I    GPI VAEYM EVLTNP+AG+Y+NRDVFG 
Sbjct:    34 PPKEQPEASSKAESGHGSLAKQLRAKI-LSTGPIPVAEYMREVLTNPQAGYYMNRDVFGR 92

Query:   128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN 187
             EGDFITSPE+SQ+FGE+VG+W +  W +MG P+   LVELGPGRGTL  D+L+  +KFK 
Sbjct:    93 EGDFITSPEISQIFGELVGIWLVSEWRKMGSPSPFQLVELGPGRGTLARDVLKVLTKFKQ 152

Query:   188 FTESLHIHLVECSPTLQKLQHHNL----KCMDENNANDNVEERTISSLAGTPVSWHAALE 243
               E   +H+VE SP L K Q        + + E+    + +E T +S  GT   WH  LE
Sbjct:   153 DAE-FSMHMVEVSPFLSKAQAQRFCYSHQTLPEDAQLPHYQEGTTAS--GTKAFWHRRLE 209

Query:   244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSA 287
              VP GF ++++AHEF+DALPVH+ Q     W E L+D+A    A
Sbjct:   210 DVPQGF-SLVLAHEFFDALPVHKLQLVDGKWQEVLIDVASSDGA 252

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-060929-628 zgc:153989 "zgc:153989" [Danio rerio (taxid:7955)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 101/232 (43%), Positives = 148/232 (63%)

Query:    82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             +   ++KHL   I    GPISVAEYM E LTNP  G+Y+  D+ GA GDFITSPE+SQ+F
Sbjct:    26 INKSILKHLASKI-IATGPISVAEYMREALTNPVLGYYVKNDMLGAGGDFITSPEISQIF 84

Query:   142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT-ES-LHIHLVEC 199
             GE++GVW +  W   G+ + + LVELGPGRG+L +D+LR  S+ K    E+ + IHLVE 
Sbjct:    85 GELLGVWCISEWMAAGKSSALQLVELGPGRGSLTSDILRVFSQLKGVLGETGISIHLVEV 144

Query:   200 SPTLQKLQHHNLKCMDENNA----NDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVA 255
             SP L ++Q    +C+  N      N++   R+ ++  G P+ W+ ++E VP GF +I +A
Sbjct:   145 SPKLSQVQ---AECLTGNQTQTYDNNHTFYRSGTTCTGLPIYWYHSIEDVPRGF-SIFLA 200

Query:   256 HEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQK 307
             HEF+DALP+H+FQ+T  GW E LVDI  ++       + +  +L++   +QK
Sbjct:   201 HEFFDALPIHKFQRTENGWREVLVDIDPENPGKLRFVVSHRPTLASSTLIQK 252

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|Q6GQ37 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus laevis (taxid:8355)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 98/213 (46%), Positives = 137/213 (64%)

Query:    75 EHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFIT 133
             E   +R   + L+ HL  I K +  GPI+V+EYM EVLTNP  G+Y++ D+ G  GDF+T
Sbjct:    35 EKPQKRTSANALLNHL--IFKIKSTGPITVSEYMREVLTNPVKGYYMHNDMLGEHGDFVT 92

Query:   134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES-- 191
             SPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  DLLR  S F    +S  
Sbjct:    93 SPEISQIFGELLGVWCISEWVSAGKPKAIQLVELGPGRGTLTDDLLRVFSNFGRLLDSCD 152

Query:   192 LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLAGTPVSWHAALEQVPSG 248
             + +HLVE SP L  +Q   L  K ++ E ++N  V +  I+   G PV W+  ++ VP+G
Sbjct:   153 ISVHLVEVSPKLSDIQAQRLTGKSIEVELDSNSPVYKNGITK-TGRPVCWYQDIQDVPNG 211

Query:   249 FPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
             + +  +AHEF+DALP+H+ QK   GW E L+DI
Sbjct:   212 Y-SFYIAHEFFDALPIHKLQKIKDGWREMLIDI 243

GO:0005739 "mitochondrion" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|Q5BKM6 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 103/229 (44%), Positives = 140/229 (61%)

Query:    59 ASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAG 117
             AS    I R       +H       + L+ HL  I K +  GPI+V+EYM EVLTNP  G
Sbjct:    17 ASANCRIQRYQSSRTEKHQDSTSANA-LLNHL--IFKIKSTGPITVSEYMREVLTNPVKG 73

Query:   118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
             +Y++ D+ G  GDF+TSPE+SQ+FGE++GVW +  W   G+P  + LVELGPGRGTL  D
Sbjct:    74 YYMHHDMLGEHGDFVTSPELSQIFGELLGVWCISEWMSAGKPKSLQLVELGPGRGTLTDD 133

Query:   178 LLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLA 232
             LLR  S F     S  + +HLVE SP L  +Q   L  K ++ E + N  V ++ I+   
Sbjct:   134 LLRVFSNFGRLLNSCDISVHLVEVSPKLSDIQAQRLTGKAIEVELDKNSPVYKKGITK-T 192

Query:   233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
             G PV W+  ++ VP+GF +  +AHEF+DALP+H+ QKT  GW E L+DI
Sbjct:   193 GFPVCWYQDIQDVPTGF-SFYIAHEFFDALPIHKLQKTKDGWREILIDI 240

GO:0005739 "mitochondrion" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

UNIPROTKB|F1MJQ5 C11H2orf56 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%)

Query:    79 ERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV 137
             E    + +++HL  I K +  GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+
Sbjct:    36 ENNTVTPMLRHL--IYKIKSTGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEI 93

Query:   138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIH 195
             SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  + +H
Sbjct:    94 SQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLH 153

Query:   196 LVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTI 252
             LVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  L+ VP  + + 
Sbjct:   154 LVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SF 211

Query:   253 IVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
              +AHEF+D LPVH+FQKT  GW E LVDI
Sbjct:   212 YLAHEFFDVLPVHKFQKTPHGWREVLVDI 240

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q2KHV5 NDUFAF7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Bos taurus (taxid:9913)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 99/209 (47%), Positives = 137/209 (65%)

Query:    79 ERKLESELVKHLKGIIKFRG-GPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEV 137
             E    + +++HL  I K +  GPI+VAEYM+EVLTNP  G+Y+NRD+ G EGDFITSPE+
Sbjct:    36 ENNTVTPMLRHL--IYKIKSTGPITVAEYMKEVLTNPAKGYYMNRDMLGEEGDFITSPEI 93

Query:   138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTES--LHIH 195
             SQMFGE++G+W +  W   G+     LVELGPG+GTL+ D+LR  S+  +  ++  + +H
Sbjct:    94 SQMFGELLGIWFISEWIAAGKNAAFQLVELGPGKGTLLGDILRVFSQLGSLLKNCDISLH 153

Query:   196 LVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTI 252
             LVE S  L ++Q   L   K   E NA   V  + ++  +G PVSW+  L+ VP  + + 
Sbjct:   154 LVEVSQKLSEIQALTLTEEKVPLERNAESPVYMKGVTK-SGIPVSWYRDLQDVPKEY-SF 211

Query:   253 IVAHEFYDALPVHQFQKTTRGWCEKLVDI 281
              +AHEF+D LPVH+FQKT  GW E LVDI
Sbjct:   212 YLAHEFFDVLPVHKFQKTPHGWREVLVDI 240

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

MGI|MGI:1920944 Ndufaf7 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7" [Mus musculus (taxid:10090)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 102/225 (45%), Positives = 143/225 (63%)

Query:    67 RSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFG 126
             R   Y+      E    + +++HL   IK  G PI+VAEYM+EVLTNP  G+Y+++D+ G
Sbjct:    19 RGKCYSSGNEPAESNQVTPMLRHLMYKIKSTG-PITVAEYMKEVLTNPAKGYYVHQDMLG 77

Query:   127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK 186
              +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD+LR  S+  
Sbjct:    78 EKGDFITSPEISQIFGELLGVWFVSEWIASGKSPAFQLVELGPGRGTLTADILRVFSQLG 137

Query:   187 NF--TESLHIHLVECSPTLQKLQHHNL---KCMDENNANDNVEERTISSLAGTPVSWHAA 241
             +   T ++ IHLVE S  L ++Q   L   K   E +A   V  + ++  +G PVSW+  
Sbjct:   138 SVLKTCAISIHLVEVSQKLSEIQALTLAEEKVPLERDAESLVYMKGVTK-SGIPVSWYRD 196

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSS 286
             L+ VP G+ ++ +AHEF+D LPVH+FQKT RGW E  VD+   +S
Sbjct:   197 LKDVPEGY-SLYLAHEFFDVLPVHKFQKTPRGWREVFVDVDPQAS 240

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

RGD|1311578 Ndufaf7 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 7" [Rattus norvegicus (taxid:10116)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 103/233 (44%), Positives = 146/233 (62%)

Query:    59 ASTAI-SIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAG 117
             A T I SI R   ++      E    + +++HL   IK  G PI+VAEYM+EVLTNP  G
Sbjct:    10 ARTGIPSIWRRKCFSSGNEPAESNHVTPMLRHLMYKIKSTG-PITVAEYMKEVLTNPAKG 68

Query:   118 FYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMAD 177
             +Y++ D+ G +GDFITSPE+SQ+FGE++GVW +  W   G+     LVELGPGRGTL AD
Sbjct:    69 YYVHHDMLGEKGDFITSPEISQIFGELLGVWFVSEWMASGKSTAFQLVELGPGRGTLTAD 128

Query:   178 LLRGASKFKNFTES--LHIHLVECSPTLQKLQHHNL--KCMD-ENNANDNVEERTISSLA 232
             +LR  S+  +  ++  + IHLVE S  L ++Q   L  + +  E +A   V  + ++  +
Sbjct:   129 ILRVFSQLGSVLKTCDISIHLVEVSQKLSEIQALTLTEETVPLERDAESLVYMKGVTK-S 187

Query:   233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDS 285
             G P+SW+  L+ VP+G+ +  +AHEF+D LPVH+FQKT  GW E  VDI   S
Sbjct:   188 GIPISWYRDLKDVPTGY-SFYLAHEFFDVLPVHKFQKTPHGWREVFVDIDPQS 239

GO:0005739 "mitochondrion" evidence=ISO;ISS

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
COG1565	370	COG1565, COG1565, Uncharacterized conserved protei	9e-56
pfam02636	241	pfam02636, Methyltransf_28, Putative S-adenosyl-L-	9e-41

>gnl|CDD|224481 COG1565, COG1565, Uncharacterized conserved protein [Function unknown]

 Score =  184 bits (469), Expect = 9e-56
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 19/183 (10%)

Query: 98  GGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157
           GGPIS +++ME  L +P+ G+Y +    G +GDFIT+PE+SQ+FGE++    + LW+++G
Sbjct: 15  GGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELG 74

Query: 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNLKCMDE 216
           +P  + LVE+G GRGTL +D+LR   + +    E+L  +++E SP L+  Q   LK    
Sbjct: 75  RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK---- 130

Query: 217 NNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCE 276
               D              + W   +E +P  FP I+V++E +DALPV QF +T   + E
Sbjct: 131 -ATED-------------LIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVE 176

Query: 277 KLV 279
           ++V
Sbjct: 177 RVV 179

Length = 370

>gnl|CDD|217158 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  141 bits (358), Expect = 9e-41
 Identities = 52/142 (36%), Positives = 71/142 (50%), Gaps = 19/142 (13%)

Query: 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPT 202
           ++  W   LW+ +G P  + LVE+G GRGTL AD+LR   K    F E+L  HLVE SP 
Sbjct: 1   LLARWLAQLWQALGYPAPLRLVEIGAGRGTLAADILRALRKLLPEFYEALEYHLVEISPA 60

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L                  S     + W   L ++P  FP  I+A+E +DAL
Sbjct: 61  LRERQKERLA----------------GSAPSLAIRWLDELPELP--FPGFILANEVFDAL 102

Query: 263 PVHQFQKTTRGWCEKLVDIAED 284
           PV  F +   GW E+ V + ED
Sbjct: 103 PVDLFVRDNGGWRERYVGLDED 124

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. In eukaryotes it plays a role in mitochondrial complex I activity. Length = 241

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
COG1565	370	Uncharacterized conserved protein [Function unknow	100.0
KOG2901	415	consensus Uncharacterized conserved protein [Funct	100.0
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	100.0
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.5
PHA03412	241	putative methyltransferase; Provisional	97.41
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.3
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.2
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.14
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.91
PLN02244	340	tocopherol O-methyltransferase	96.88
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	96.84
TIGR03438	301	probable methyltransferase. This model represents	96.81
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.8
PRK06202	232	hypothetical protein; Provisional	96.76
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.76
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.75
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.75
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.74
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.71
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.61
PHA03411	279	putative methyltransferase; Provisional	96.58
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	96.53
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.47
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.44
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.4
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.39
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.38
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.36
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	96.32
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.28
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.27
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.26
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.2
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	96.15
PRK08317	241	hypothetical protein; Provisional	96.15
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.01
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.98
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.92
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	95.87
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	95.84
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	95.76
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	95.69
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	95.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	95.65
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	95.62
PF13679	141	Methyltransf_32: Methyltransferase domain	95.61
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.6
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	95.56
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	95.55
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	95.51
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	95.43
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.42
PRK14967	223	putative methyltransferase; Provisional	95.41
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	95.4
PRK07402	196	precorrin-6B methylase; Provisional	95.34
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	95.33
PRK10258	251	biotin biosynthesis protein BioC; Provisional	95.3
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.3
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	95.25
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	95.17
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	95.15
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	95.12
KOG2904	328	consensus Predicted methyltransferase [General fun	95.11
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	95.02
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.02
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	94.97
COG2890	280	HemK Methylase of polypeptide chain release factor	94.84
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	94.77
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	94.74
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	94.72
PRK11207	197	tellurite resistance protein TehB; Provisional	94.66
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.59
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	94.57
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.52
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	94.38
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.37
PRK05785	226	hypothetical protein; Provisional	94.37
PRK00811	283	spermidine synthase; Provisional	94.35
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	94.31
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	94.25
PRK04457	262	spermidine synthase; Provisional	94.24
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	94.23
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	94.19
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.12
PLN02233	261	ubiquinone biosynthesis methyltransferase	94.09
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	94.07
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.03
PLN02336	475	phosphoethanolamine N-methyltransferase	93.99
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	93.99
PRK12335	287	tellurite resistance protein TehB; Provisional	93.81
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	93.79
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	93.78
PLN02585	315	magnesium protoporphyrin IX methyltransferase	93.75
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	93.62
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	93.51
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	93.41
COG4123	248	Predicted O-methyltransferase [General function pr	93.36
PLN02490	340	MPBQ/MSBQ methyltransferase	93.31
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	93.31
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	93.26
PRK04266	226	fibrillarin; Provisional	93.16
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	92.82
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	92.74
PRK14968	188	putative methyltransferase; Provisional	92.7
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	92.59
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	92.56
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	92.39
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	92.35
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	92.28
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.14
TIGR00438	188	rrmJ cell division protein FtsJ.	91.97
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	91.85
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	91.52
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	91.47
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	91.41
PLN02366	308	spermidine synthase	91.2
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	91.18
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	91.18
PRK06922	677	hypothetical protein; Provisional	90.98
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	90.84
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	90.83
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	90.73
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	90.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	90.54
TIGR00452	314	methyltransferase, putative. Known examples to dat	90.38
PRK01581	374	speE spermidine synthase; Validated	90.32
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	89.85
PTZ00146	293	fibrillarin; Provisional	89.74
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	89.6
PLN02336	475	phosphoethanolamine N-methyltransferase	89.17
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	89.12
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	89.0
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	88.98
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	88.63
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	88.38
PLN02823	336	spermine synthase	88.24
KOG4300	252	consensus Predicted methyltransferase [General fun	88.13
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	88.13
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	87.95
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	87.85
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	87.75
PRK04148	134	hypothetical protein; Provisional	87.64
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	87.59
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	87.58
PRK03612	521	spermidine synthase; Provisional	87.34
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	87.24
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	87.07
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	86.41
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	86.29
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	86.08
PRK10901	427	16S rRNA methyltransferase B; Provisional	85.12
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	85.0
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	84.94
COG4121	252	Uncharacterized conserved protein [Function unknow	84.63
PLN02476	278	O-methyltransferase	83.96
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	82.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	81.4
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	81.01
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	80.69
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	80.4
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	80.23
COG4301	321	Uncharacterized conserved protein [Function unknow	80.2
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	80.01

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.8e-54  Score=412.82  Aligned_cols=187  Identities=36%  Similarity=0.680  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceE
Q 021589           85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL  164 (310)
Q Consensus        85 ~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~I  164 (310)
                      .+..+|++.|+.. |||||++||++|||+|++|||+++.+||+.||||||||||++|||+||.||+++|+++|.|.++.|
T Consensus         3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l   81 (370)
T COG1565           3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL   81 (370)
T ss_pred             cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence            4567788888875 999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EEecCCchHHHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecccc
Q 021589          165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE  243 (310)
Q Consensus       165 vElGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sle  243 (310)
                      ||||||+|+||.|||++++ ..|++|+.++|+|||+||.|+++|+++|+..                  ...++|....+
T Consensus        82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~------------------~~~~~~~~~~e  143 (370)
T COG1565          82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT------------------EDLIRWVEWVE  143 (370)
T ss_pred             EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc------------------ccchhHHHHHH
Confidence            9999999999999999995 5799999999999999999999999999863                  14688888888


Q ss_pred             cCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeee
Q 021589          244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASG  290 (310)
Q Consensus       244 elp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~  290 (310)
                      ++|.+.++|||+|||||||||++|.++.+.|+|.+|.-+.++++.+.
T Consensus       144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~  190 (370)
T COG1565         144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS  190 (370)
T ss_pred             hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec
Confidence            99998899999999999999999999999999999976666677775

>KOG2901 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-47  Score=365.35  Aligned_cols=211  Identities=66%  Similarity=1.121  Sum_probs=190.2

Q ss_pred             CCCCCCCCCchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHH
Q 021589           73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL  152 (310)
Q Consensus        73 ~~~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~  152 (310)
                      ||.++|+..  ..|+++|+..|+.+ ||||+++||..||.||.+|||+++++||++|||+||||++|+|||||++|....
T Consensus        24 p~~~sp~~t--~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e  100 (415)
T KOG2901|consen   24 PPDHSPEET--PHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE  100 (415)
T ss_pred             CCCCCcccc--HHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence            566666644  44999999999998 799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccC
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (310)
                      |+++|.|..+++||+|||+|+||.|+|+.+.++.  -..++.|+||+||.|.+.|.++|++....+..    +++.++..
T Consensus       101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~--~~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~----~~~~tt~s  174 (415)
T KOG2901|consen  101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFK--DEDLSVHLVEVSPALSKLQAQNLCCTDESLSE----YKKGSTLS  174 (415)
T ss_pred             hhhhCCccceeEEEeccchhHHHHHHHHHHHHhc--CceeeEEEEEecHhHHHHhhcceeEeeccHHH----Hhhccccc
Confidence            9999999999999999999999999999987654  23478999999999999999999987765443    55556667


Q ss_pred             CCCeEEecccccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeeeccc
Q 021589          233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQI  293 (310)
Q Consensus       233 ~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~~~~  293 (310)
                      +.++.|+.+++++|.+. ++|+|||||||||||+|++..++|+|++|++++|+.|.+.+..
T Consensus       175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~  234 (415)
T KOG2901|consen  175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSP  234 (415)
T ss_pred             cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCC
Confidence            88999999999999995 9999999999999999999999999999999999888776653

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=100.00  E-value=3.9e-33  Score=257.62  Aligned_cols=136  Identities=40%  Similarity=0.759  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHcCCCC-cceEEEecCCchHHHHHHHHHHhcC-cCccccceEEEEecChhhHHHHHHhccccccCCcCc
Q 021589          144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND  221 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~-~l~IvElGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~  221 (310)
                      |||+|++++|+++|.|. +++|||+|||+|+||.|||+++++. |+++++++|+|||+||.|+++|+++|.....+    
T Consensus         1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~----   76 (252)
T PF02636_consen    1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK----   76 (252)
T ss_dssp             HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred             ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence            79999999999999886 5999999999999999999999865 99999999999999999999999999864221    


Q ss_pred             cchhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEec--CCCCeeeecc
Q 021589          222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSAASGLQ  292 (310)
Q Consensus       222 ~~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~--~dg~f~~~~~  292 (310)
                             ....+.+|.|+++++++|  .+|||||||||||||||+|++++++|+|++|+++  .+++|.+.+.
T Consensus        77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~  140 (252)
T PF02636_consen   77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLS  140 (252)
T ss_dssp             -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEE
T ss_pred             -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeC
Confidence                   112456899999888887  4899999999999999999999999999999998  4677888764

; PDB: 4F3N_A 1ZKD_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.50  E-value=0.00021  Score=64.03  Aligned_cols=91  Identities=16%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCe
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV  236 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v  236 (310)
                      +.-..+.|+|+|||+|-+.+.||++-- .|     -...+||.||.......++......              .+++.+
T Consensus        45 ~pesglpVlElGPGTGV~TkaIL~~gv-~~-----~~L~~iE~~~dF~~~L~~~~p~~~i--------------i~gda~  104 (194)
T COG3963          45 DPESGLPVLELGPGTGVITKAILSRGV-RP-----ESLTAIEYSPDFVCHLNQLYPGVNI--------------INGDAF  104 (194)
T ss_pred             CcccCCeeEEEcCCccHhHHHHHhcCC-Cc-----cceEEEEeCHHHHHHHHHhCCCccc--------------cccchh
Confidence            333457899999999999999998752 23     2589999999999988887764321              122222


Q ss_pred             EEecccccCCCCCCEEEEEecccccccceeE
Q 021589          237 SWHAALEQVPSGFPTIIVAHEFYDALPVHQF  267 (310)
Q Consensus       237 ~W~~sleelp~~~~~vIiANE~fDALPvh~f  267 (310)
                      .--..+.+-+......||+--.+-++|.|+-
T Consensus       105 ~l~~~l~e~~gq~~D~viS~lPll~~P~~~~  135 (194)
T COG3963         105 DLRTTLGEHKGQFFDSVISGLPLLNFPMHRR  135 (194)
T ss_pred             hHHHHHhhcCCCeeeeEEeccccccCcHHHH
Confidence            1111222222222356777777777777653

>PHA03412 putative methyltransferase; Provisional

Probab=97.41  E-value=0.00062  Score=63.85  Aligned_cols=69  Identities=23%  Similarity=0.203  Sum_probs=50.2

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       126 G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      .+.|.|+|+++|...+    +     +|. .+   ..+|+|+|||+|.|+..+.+.....+    ..+++.||+++...+
T Consensus        28 ~~~GqFfTP~~iAr~~----~-----i~~-~~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al~   90 (241)
T PHA03412         28 SELGAFFTPIGLARDF----T-----IDA-CT---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYYK   90 (241)
T ss_pred             ccCCccCCCHHHHHHH----H-----Hhc-cC---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHHH
Confidence            4679999999976553    1     121 11   24999999999999999877642212    258999999999888


Q ss_pred             HHHHhc
Q 021589          206 LQHHNL  211 (310)
Q Consensus       206 ~Q~e~L  211 (310)
                      .-++.+
T Consensus        91 ~Ar~n~   96 (241)
T PHA03412         91 LGKRIV   96 (241)
T ss_pred             HHHhhc
Confidence            777654

>TIGR00740 methyltransferase, putative

Probab=97.30  E-value=0.0018  Score=59.06  Aligned_cols=48  Identities=17%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+++.+. .|    ..+++-||+|+.+.+.-++++..
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~-~p----~~~v~gvD~s~~ml~~a~~~~~~  101 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNIN-QP----NVKIIGIDNSQPMVERCRQHIAA  101 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHHh
Confidence            35899999999999998877642 12    25899999999999888877753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.20  E-value=0.0028  Score=55.31  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=49.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s  241 (310)
                      -+|+|+|||+|.++..++..   .|+    .+++.+|+|+...+..++++......               ...+.+.+-
T Consensus        33 ~~vLDlG~G~G~i~~~la~~---~~~----~~v~~vDi~~~a~~~a~~n~~~n~~~---------------~v~~~~~d~   90 (170)
T PF05175_consen   33 GRVLDLGCGSGVISLALAKR---GPD----AKVTAVDINPDALELAKRNAERNGLE---------------NVEVVQSDL   90 (170)
T ss_dssp             CEEEEETSTTSHHHHHHHHT---STC----EEEEEEESBHHHHHHHHHHHHHTTCT---------------TEEEEESST
T ss_pred             CeEEEecCChHHHHHHHHHh---CCC----CEEEEEcCCHHHHHHHHHHHHhcCcc---------------ccccccccc
Confidence            48999999999999877653   332    46999999999999888877642110               123444444


Q ss_pred             cccCCCCCCEEEEEeccc
Q 021589          242 LEQVPSGFPTIIVAHEFY  259 (310)
Q Consensus       242 leelp~~~~~vIiANE~f  259 (310)
                      ++.++.+..-+|++|=.+
T Consensus        91 ~~~~~~~~fD~Iv~NPP~  108 (170)
T PF05175_consen   91 FEALPDGKFDLIVSNPPF  108 (170)
T ss_dssp             TTTCCTTCEEEEEE---S
T ss_pred             cccccccceeEEEEccch
Confidence            455553334789998544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.14  E-value=0.0042  Score=57.37  Aligned_cols=48  Identities=15%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+++.+. .|    ..+++.||+||.+.+.-++++..
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~-~~----~~~v~gvD~S~~ml~~A~~~~~~  104 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIH-HD----NCKIIAIDNSPAMIERCRRHIDA  104 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHHh
Confidence            35899999999999888766542 23    25899999999999988877753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.91  E-value=0.0064  Score=56.74  Aligned_cols=43  Identities=26%  Similarity=0.494  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||.|+++..+++..         .+++.||+++.+.+..++++.
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~~---------~~v~~vEid~~~~~~l~~~~~   72 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKRA---------KKVYAIELDPRLAEFLRDDEI   72 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHhc
Confidence            3589999999999999987641         268999999999999888775

>PLN02244 tocopherol O-methyltransferase

Probab=96.88  E-value=0.077  Score=51.57  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHcCC-----CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          141 FGEMVGVWAMCLWEQMGQ-----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       141 FGe~Ia~~~~~~w~~~g~-----p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+.-.+.+.++.+.++.     ....+|+|+|||+|.++..+.+..        ..+++-||+|+.+.+.-+++..
T Consensus        94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~~  162 (340)
T PLN02244         94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALAA  162 (340)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHHH
Confidence            344444444445555554     344689999999999998876542        1379999999999887666543

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=96.84  E-value=0.011  Score=53.44  Aligned_cols=45  Identities=27%  Similarity=0.186  Sum_probs=35.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-.|+|+|||+|.++..+.+.+   |    ..+++-||+|+.+.+.-++++.
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~~   88 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYLP   88 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhCC
Confidence            3589999999999888876542   2    2479999999999988777653

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03438 probable methyltransferase

Probab=96.81  E-value=0.0041  Score=59.34  Aligned_cols=45  Identities=24%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|+.+.-+++.+..      ..+|+-||+|+.|.+.-+++|.
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~  109 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA  109 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence            58999999999999999988642      2579999999999766555554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.80  E-value=0.01  Score=54.44  Aligned_cols=53  Identities=21%  Similarity=0.236  Sum_probs=39.1

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...++.....+|+|+|||+|.++..+.+..   |.    .+++-||+|+.+.+.-++++.
T Consensus        24 l~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~----~~v~gvD~s~~~i~~a~~~~~   76 (258)
T PRK01683         24 LARVPLENPRYVVDLGCGPGNSTELLVERW---PA----ARITGIDSSPAMLAEARSRLP   76 (258)
T ss_pred             HhhCCCcCCCEEEEEcccCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhCC
Confidence            334444445699999999999988776542   32    479999999999887776653

>PRK06202 hypothetical protein; Provisional

Probab=96.76  E-value=0.018  Score=52.35  Aligned_cols=50  Identities=24%  Similarity=0.368  Sum_probs=38.3

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+.+|+|+|||+|.++..+.+..++..   ...+++.||+||.+.+.-+++..
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g---~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDG---LRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCC---CCcEEEEEcCCHHHHHHHHhccc
Confidence            446999999999999988877664321   12479999999999987776543

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.76  E-value=0.0039  Score=54.11  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=38.7

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++....-+|+|+|||+|.++..+++..         .+++.||+++.+.+..++++.
T Consensus         8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~~---------~~v~~vE~~~~~~~~~~~~~~   56 (169)
T smart00650        8 AANLRPGDTVLEIGPGKGALTEELLERA---------ARVTAIEIDPRLAPRLREKFA   56 (169)
T ss_pred             hcCCCCcCEEEEECCCccHHHHHHHhcC---------CeEEEEECCHHHHHHHHHHhc
Confidence            3343334589999999999999987641         369999999999998888774

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.75  E-value=0.012  Score=52.75  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=39.0

Q ss_pred             HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       150 ~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .......+.+...+|+|+|||+|.++..+++..         .+|+.+|+|+.+.+.-++++.
T Consensus        53 ~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---------~~v~~~D~s~~~i~~a~~~~~  106 (230)
T PRK07580         53 LSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---------AKVVASDISPQMVEEARERAP  106 (230)
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---------CEEEEEECCHHHHHHHHHHHH
Confidence            333333334445699999999999988775421         359999999999887777664

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.75  E-value=0.0096  Score=50.39  Aligned_cols=82  Identities=18%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~-  239 (310)
                      ..+|+|+|||+|.++..+++.+  .|    ..+++-||+|+.+.+.-++++.....                 ..+... 
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~--~~----~~~i~gvD~s~~~i~~a~~~~~~~~~-----------------~ni~~~~   60 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKEL--NP----GAKIIGVDISEEMIEYAKKRAKELGL-----------------DNIEFIQ   60 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHS--TT----TSEEEEEESSHHHHHHHHHHHHHTTS-----------------TTEEEEE
T ss_pred             CCEEEEecCcCcHHHHHHHHhc--CC----CCEEEEEECcHHHHHHhhcccccccc-----------------cccceEE
Confidence            4699999999999999887632  22    34799999999999988886653211                 023222 


Q ss_pred             cccccCCC---CCCEEEEEecccccccce
Q 021589          240 AALEQVPS---GFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       240 ~sleelp~---~~~~vIiANE~fDALPvh  265 (310)
                      .++.+++.   +..-+|+++.++..++-.
T Consensus        61 ~d~~~l~~~~~~~~D~I~~~~~l~~~~~~   89 (152)
T PF13847_consen   61 GDIEDLPQELEEKFDIIISNGVLHHFPDP   89 (152)
T ss_dssp             SBTTCGCGCSSTTEEEEEEESTGGGTSHH
T ss_pred             eehhccccccCCCeeEEEEcCchhhccCH
Confidence            22233331   224688998888766643

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.74  E-value=0.0039  Score=49.32  Aligned_cols=43  Identities=23%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      -+|+|+|||+|.++..+++..   |.    .+++-||+||.+.+.-++++
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~---~~----~~v~gvD~s~~~~~~a~~~~   45 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLF---PG----ARVVGVDISPEMLEIARERA   45 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHH---TT----SEEEEEESSHHHHHHHHHHH
T ss_pred             CEEEEEcCcCCHHHHHHHhcC---CC----CEEEEEeCCHHHHHHHHHHH
Confidence            389999999999999988732   22    47999999999999888887

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.71  E-value=0.011  Score=54.50  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       151 ~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+.+.++ +.+.+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        36 ~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~   87 (255)
T PRK11036         36 RLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE   87 (255)
T ss_pred             HHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            3444444 34569999999999988877542         1379999999999988777664

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.61  E-value=0.0086  Score=56.80  Aligned_cols=43  Identities=28%  Similarity=0.484  Sum_probs=37.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|||||.|.|+.-+++..         -+++-||+.+.|.+..++++.
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~---------~~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERA---------ARVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhc---------CeEEEEEeCHHHHHHHHHhcc
Confidence            4699999999999999998764         258999999999999999875

>PHA03411 putative methyltransferase; Provisional

Probab=96.58  E-value=0.017  Score=55.38  Aligned_cols=67  Identities=24%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       125 ~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      ++..|-|+|+..|-..|  ++       .  . .+ .-+|+|+|||+|.++..++...   +    ..+++.||+||.+.
T Consensus        42 ~~~~G~FfTP~~i~~~f--~~-------~--~-~~-~grVLDLGcGsGilsl~la~r~---~----~~~V~gVDisp~al  101 (279)
T PHA03411         42 LGGSGAFFTPEGLAWDF--TI-------D--A-HC-TGKVLDLCAGIGRLSFCMLHRC---K----PEKIVCVELNPEFA  101 (279)
T ss_pred             ccCceeEcCCHHHHHHH--Hh-------c--c-cc-CCeEEEcCCCCCHHHHHHHHhC---C----CCEEEEEECCHHHH
Confidence            66789999999995544  11       1  1 11 2389999999999988776542   1    14799999999999


Q ss_pred             HHHHHhc
Q 021589          205 KLQHHNL  211 (310)
Q Consensus       205 ~~Q~e~L  211 (310)
                      +.-++++
T Consensus       102 ~~Ar~n~  108 (279)
T PHA03411        102 RIGKRLL  108 (279)
T ss_pred             HHHHHhC
Confidence            8877765

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=96.53  E-value=0.0089  Score=53.05  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++..+.+.+.......+.+|+|+|||+|.++..+++..   |    ..+++.+|+|+.+.+..++++.
T Consensus        18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~   79 (240)
T TIGR02072        18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS   79 (240)
T ss_pred             HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence            344555555544332344689999999999988776643   2    2469999999999887777664

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.47  E-value=0.029  Score=50.51  Aligned_cols=55  Identities=11%  Similarity=0.149  Sum_probs=40.3

Q ss_pred             HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       152 ~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+.++....-+|+|+|||+|.++..+.+...  |    ..+++-||+||.+.+.-++++.
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~--~----~~~v~gvD~s~~~~~~a~~~~~   91 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVG--P----EGHVIGLDFSENMLSVGRQKVK   91 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHHH
Confidence            33444444446999999999999988876542  1    2479999999999887776664

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.44  E-value=0.0057  Score=57.16  Aligned_cols=44  Identities=30%  Similarity=0.523  Sum_probs=38.5

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ....|+|+|||.|.|+..++...         -++++||+.+.+.+.-++++.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~---------~~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG---------KRVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS---------SEEEEEESSHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCccchhhHhccc---------CcceeecCcHhHHHHHHHHhh
Confidence            44699999999999999998875         269999999999998888775

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.40  E-value=0.0097  Score=55.99  Aligned_cols=67  Identities=24%  Similarity=0.389  Sum_probs=46.7

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       124 ~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      .+|.  .|++.+.+.        .++++   .++....-+|+|+|||+|.++..+++..   +      +++.||+++.+
T Consensus        19 ~~gq--~fl~~~~i~--------~~i~~---~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~avE~d~~~   76 (272)
T PRK00274         19 SLGQ--NFLIDENIL--------DKIVD---AAGPQPGDNVLEIGPGLGALTEPLLERA---A------KVTAVEIDRDL   76 (272)
T ss_pred             ccCc--CcCCCHHHH--------HHHHH---hcCCCCcCeEEEeCCCccHHHHHHHHhC---C------cEEEEECCHHH
Confidence            3454  488887653        22222   2232233589999999999999987752   1      58999999999


Q ss_pred             HHHHHHhcc
Q 021589          204 QKLQHHNLK  212 (310)
Q Consensus       204 r~~Q~e~L~  212 (310)
                      .+.-++++.
T Consensus        77 ~~~~~~~~~   85 (272)
T PRK00274         77 APILAETFA   85 (272)
T ss_pred             HHHHHHhhc
Confidence            998877663

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.39  E-value=0.029  Score=50.39  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=36.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+|+|||+|.++..+...         ..+++-||+||.+.+..++++..
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~~   99 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQG   99 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHh
Confidence            3469999999999988877542         13689999999999988887753

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.38  E-value=0.054  Score=51.46  Aligned_cols=70  Identities=13%  Similarity=0.269  Sum_probs=46.8

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |-|+.-|+...+.-+.+..++     .  ...+.+|+|+|||+|.++..+.+..   |+    .+++.||+|+...+.-+
T Consensus        97 ~vlipr~~te~lv~~~l~~~~-----~--~~~~~~vLDlG~GsG~i~~~la~~~---~~----~~v~avDis~~al~~A~  162 (284)
T TIGR03533        97 RVLIPRSPIAELIEDGFAPWL-----E--PEPVKRILDLCTGSGCIAIACAYAF---PE----AEVDAVDISPDALAVAE  162 (284)
T ss_pred             CCccCCCchHHHHHHHHHHHh-----c--cCCCCEEEEEeCchhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHH
Confidence            556666666444444333222     1  1123589999999999999887643   22    47999999999988777


Q ss_pred             Hhcc
Q 021589          209 HNLK  212 (310)
Q Consensus       209 e~L~  212 (310)
                      +++.
T Consensus       163 ~n~~  166 (284)
T TIGR03533       163 INIE  166 (284)
T ss_pred             HHHH
Confidence            7664

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.36  E-value=0.01  Score=55.01  Aligned_cols=48  Identities=29%  Similarity=0.478  Sum_probs=37.5

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+....-.|+|+|||+|.++..+++..   +      .++.||+++.+.+.-++++.
T Consensus        25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        25 ANVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             cCCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHhC
Confidence            333334589999999999999987653   1      48999999999988777664

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=96.32  E-value=0.0068  Score=47.79  Aligned_cols=45  Identities=24%  Similarity=0.358  Sum_probs=32.8

Q ss_pred             EEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       164 IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      |+|+|||+|+.+..+++.+..-|    ..+++.||+|+.+-+.-+++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~----~~~~~gvD~s~~~l~~~~~~~~   45 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGP----SSRVIGVDISPEMLELAKKRFS   45 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcc----cceEEEEECCHHHHHHHHHhch
Confidence            79999999999999998762212    2589999999999988777664

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.28  E-value=0.014  Score=46.53  Aligned_cols=51  Identities=20%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++.+..-+|+|+|||.|.++..+++..   |.    .+++.||.|+.+.+.-++++.
T Consensus        14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~   64 (124)
T TIGR02469        14 KLRLRPGDVLWDIGAGSGSITIEAARLV---PN----GRVYAIERNPEALRLIERNAR   64 (124)
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHHC---CC----ceEEEEcCCHHHHHHHHHHHH
Confidence            3444333599999999999999987653   32    479999999999887665553

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.27  E-value=0.055  Score=52.08  Aligned_cols=71  Identities=15%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      +-|+.-|+...+.-+.+..++    .   ...+.+|+|+|||+|.++..+...   .|.    .+++.+|+|+...+.-+
T Consensus       109 ~vlipr~~te~lv~~~l~~~~----~---~~~~~~VLDlG~GsG~iai~la~~---~p~----~~V~avDis~~al~~A~  174 (307)
T PRK11805        109 RVLVPRSPIAELIEDGFAPWL----E---DPPVTRILDLCTGSGCIAIACAYA---FPD----AEVDAVDISPDALAVAE  174 (307)
T ss_pred             CCcCCCCchHHHHHHHHHHHh----c---cCCCCEEEEEechhhHHHHHHHHH---CCC----CEEEEEeCCHHHHHHHH
Confidence            446666666444433332222    1   111248999999999999887654   232    57999999999998877


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +++..
T Consensus       175 ~n~~~  179 (307)
T PRK11805        175 INIER  179 (307)
T ss_pred             HHHHH
Confidence            77653

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.26  E-value=0.034  Score=51.31  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=39.4

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      +..+.+.++....-+|+|+|||+|.++..+.+.   .|.    .+++-||+||.+.+.-++
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~---~p~----~~v~gvD~s~~~~~~a~~   71 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARR---WPG----AVIEALDSSPEMVAAARE   71 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHh
Confidence            344455555445569999999999999877654   232    479999999999876554

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.20  E-value=0.043  Score=50.55  Aligned_cols=46  Identities=22%  Similarity=0.423  Sum_probs=36.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..++..+   |    ..+++.+|+|+...+.-++++.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            34689999999999998887654   2    2579999999998877776654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.15  E-value=0.00068  Score=53.05  Aligned_cols=42  Identities=24%  Similarity=0.382  Sum_probs=31.9

Q ss_pred             EEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       165 vElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +|+|||+|.++..++..+   |    ..+|+.+|+||.+.+.-++++..
T Consensus         1 LdiGcG~G~~~~~l~~~~---~----~~~~~~~D~s~~~l~~a~~~~~~   42 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL---P----DARYTGVDISPSMLERARERLAE   42 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHH
T ss_pred             CEeCccChHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHhhh
Confidence            699999999999998875   2    25899999999998655555543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK08317 hypothetical protein; Provisional

Probab=96.15  E-value=0.085  Score=46.56  Aligned_cols=51  Identities=16%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      +.++.....+|+|+|||+|.++..+.+...  |    ..+++.||+|+.+.+..+++
T Consensus        13 ~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--~----~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         13 ELLAVQPGDRVLDVGCGPGNDARELARRVG--P----EGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHhcC--C----CcEEEEEeCCHHHHHHHHHH
Confidence            334444456999999999999998876541  2    24799999999988776665

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.01  E-value=0.033  Score=50.08  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++.-+.+.+..      .-+++-||++|.+.+.-++++..
T Consensus        74 ~~VLDiG~GsG~~~~~la~~~~~------~g~V~~iD~~~~~~~~a~~~l~~  119 (205)
T PRK13944         74 MKILEVGTGSGYQAAVCAEAIER------RGKVYTVEIVKELAIYAAQNIER  119 (205)
T ss_pred             CEEEEECcCccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence            58999999999999777654421      13699999999999877777753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.98  E-value=0.23  Score=44.38  Aligned_cols=65  Identities=26%  Similarity=0.296  Sum_probs=43.3

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |.++++|++....-+           .+......+|+|+|||+|.++. +|..+.  .      +++.||+++.+.+.-+
T Consensus        58 ~~~~~~p~~~~~l~~-----------~l~~~~~~~VLeiG~GsG~~t~-~la~~~--~------~v~~vd~~~~~~~~a~  117 (212)
T PRK00312         58 GQTISQPYMVARMTE-----------LLELKPGDRVLEIGTGSGYQAA-VLAHLV--R------RVFSVERIKTLQWEAK  117 (212)
T ss_pred             CCeeCcHHHHHHHHH-----------hcCCCCCCEEEEECCCccHHHH-HHHHHh--C------EEEEEeCCHHHHHHHH
Confidence            566777766422211           1233334699999999999987 443321  1      5899999999988887


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +++..
T Consensus       118 ~~~~~  122 (212)
T PRK00312        118 RRLKQ  122 (212)
T ss_pred             HHHHH
Confidence            77754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.92  E-value=0.022  Score=50.06  Aligned_cols=49  Identities=18%  Similarity=0.337  Sum_probs=37.0

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+..-+|+|+|||+|.++..+++..   |.    .+++.||+||.+.+.-++++.
T Consensus        28 ~~~~~~~vLDiG~G~G~~~~~la~~~---~~----~~v~~vD~s~~~~~~a~~n~~   76 (187)
T PRK08287         28 ELHRAKHLIDVGAGTGSVSIEAALQF---PS----LQVTAIERNPDALRLIKENRQ   76 (187)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            33344589999999999999887642   32    479999999998776665543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=95.87  E-value=0.023  Score=54.55  Aligned_cols=44  Identities=25%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-.|+|+|||.|.|+..++...         -+++.||+++.+.+.-++++..
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~~---------~~V~avEiD~~li~~l~~~~~~   80 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQLA---------KKVIAIEIDPRMVAELKKRFQN   80 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHhC---------CcEEEEECCHHHHHHHHHHHHh
Confidence            3589999999999998887641         2589999999999988887753

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=95.84  E-value=0.019  Score=51.56  Aligned_cols=64  Identities=14%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -|.+|.+...|.. +   ++. ..-.|+|+|||+|.++..+...   +|.    .+++-||+|+.+.+..++++..
T Consensus        23 ~~~~~~~~~~~~~-~---~~~-~~~~VLDiGcGtG~~~~~la~~---~p~----~~v~gVD~s~~~i~~a~~~~~~   86 (202)
T PRK00121         23 WPRLSPAPLDWAE-L---FGN-DAPIHLEIGFGKGEFLVEMAKA---NPD----INFIGIEVHEPGVGKALKKIEE   86 (202)
T ss_pred             chhhcCCCCCHHH-H---cCC-CCCeEEEEccCCCHHHHHHHHH---CCC----ccEEEEEechHHHHHHHHHHHH
Confidence            4566666555542 1   122 2358999999999999988654   232    4799999999999988876643

>TIGR00536 hemK_fam HemK family putative methylases

Probab=95.76  E-value=0.14  Score=48.36  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=35.9

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+....   |.    .+++.||+|+...+..++++.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~---~~----~~v~avDis~~al~~a~~n~~  159 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEF---PN----AEVIAVDISPDALAVAEENAE  159 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            489999999999999887653   22    479999999998887777664

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=95.69  E-value=0.028  Score=54.00  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=43.1

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccc
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD  215 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~  215 (310)
                      .++......-.|+|+|||+|-|+..+|...+         .++-+|+.|.|...-.++..+..
T Consensus        51 ~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~gtp  104 (315)
T KOG0820|consen   51 VEKADLKPTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQGTP  104 (315)
T ss_pred             HhccCCCCCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcCCC
Confidence            3334443456899999999999999998753         58999999999999998887643

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=95.68  E-value=0.24  Score=46.51  Aligned_cols=122  Identities=13%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             CchHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccC---CCCCCCCCCCeecCCChhHHHHHHHHHHHHHHH-HHc
Q 021589           81 KLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLW-EQM  156 (310)
Q Consensus        81 ~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w-~~~  156 (310)
                      .+...|...|..+++.. |--++++|.+....++...=..   ..--+|...-|--+.... .    +...+...+ +..
T Consensus        22 ~k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~T~FfR~~~~~~-~----l~~~vlp~l~~~~   95 (264)
T smart00138       22 YKRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNETRFFRESKHFE-A----LEEKVLPLLIASR   95 (264)
T ss_pred             chHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCCCcccCCcHHHH-H----HHHHHhHHHHHhc
Confidence            35678899999999987 6678999999888775211110   001123333333232222 2    223332222 222


Q ss_pred             CCCCcceEEEecCCchHH----HHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          157 GQPNRVNLVELGPGRGTL----MADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtL----a~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      ....+++|+++|||+|.-    |.-+++.....  -....+++-+|+|+.+-+.-++.
T Consensus        96 ~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~  151 (264)
T smart00138       96 RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKA--REPDVKILATDIDLKALEKARAG  151 (264)
T ss_pred             CCCCCEEEEeccccCChHHHHHHHHHHHHhhhc--CCCCeEEEEEECCHHHHHHHHcC
Confidence            233458999999999974    44443332110  01235899999999988766654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=95.65  E-value=0.04  Score=49.95  Aligned_cols=47  Identities=26%  Similarity=0.310  Sum_probs=37.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-+|+|+|||+|.++.-+.+....      .-+++-||++|.+.+.-++++..
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~------~~~V~~vE~~~~~~~~a~~~l~~  123 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGK------SGKVVTIERIPELAEKAKKTLKK  123 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence            359999999999999776654321      23799999999999988887754

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=95.62  E-value=0.054  Score=47.19  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+....   +      +++.||+||.+.+.-++++.
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~---~------~v~~vD~s~~~~~~a~~~~~   62 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKG---K------CILTTDINPFAVKELRENAK   62 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcC---C------EEEEEECCHHHHHHHHHHHH
Confidence            479999999999988776531   1      69999999999887666654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.61  E-value=0.082  Score=44.79  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ....+||++|+|.|.|+.-+...+...   ...++++.||.++.+.+.-+++.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~~~   73 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQKRA   73 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHHHH
Confidence            355799999999999999887766432   13478999999999866444433

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.60  E-value=0.074  Score=48.05  Aligned_cols=45  Identities=20%  Similarity=0.413  Sum_probs=36.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+|+|+|||+|.++..++...   |.    .+++.+|+|+.+.+.-++++.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~---~~----~~v~~iD~~~~~~~~a~~~~~  132 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKER---PD----ARVTAVDISPEALAVARKNAA  132 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            3589999999999999887643   32    479999999999987777664

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=95.56  E-value=0.014  Score=48.55  Aligned_cols=39  Identities=21%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      +...+|+|+|||.|.++..+-    ..+     .+++.||+|+.+.+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~----~~~-----~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALA----KRG-----FEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHH----HTT-----SEEEEEESSHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHH----HhC-----CEEEEEECCHHHHhh
Confidence            445699999999999877662    222     279999999998877

...

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=95.55  E-value=0.082  Score=49.32  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=36.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.+|+|+|||+|.++..+.+..   |.    .+++.||+||...+..++++..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~---~~----~~v~~vDis~~al~~A~~N~~~  132 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAAL---DG----IELHAADIDPAAVRCARRNLAD  132 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHHHHH
Confidence            3589999999999998887653   22    4689999999999887777653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=95.51  E-value=0.063  Score=52.57  Aligned_cols=45  Identities=22%  Similarity=0.319  Sum_probs=36.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++..+++.   .|.    .+++.||+|+.+.+.-++++..
T Consensus       198 g~VLDlGCG~G~ls~~la~~---~p~----~~v~~vDis~~Al~~A~~nl~~  242 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARH---SPK----IRLTLSDVSAAALESSRATLAA  242 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence            37999999999999887654   332    4799999999988877777654

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=95.43  E-value=0.071  Score=47.87  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             CCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       125 ~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      +....++++.....+++-+-+-.-+. ....  .+...+|+|+|||+|.++..+.+..   |    ..+++.||+|+.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~d~l~-l~~~--l~~g~~VLDiGcGtG~~al~la~~~---~----~~~V~giD~s~~~l   82 (187)
T PRK00107         13 WNKKYNLTAIRDPEELWERHILDSLA-IAPY--LPGGERVLDVGSGAGFPGIPLAIAR---P----ELKVTLVDSLGKKI   82 (187)
T ss_pred             hcccccccccCCHHHHHHHHHHHHHH-HHhh--cCCCCeEEEEcCCCCHHHHHHHHHC---C----CCeEEEEeCcHHHH
Confidence            45667788777776644333322111 1111  1224689999999999988877632   3    24799999999998


Q ss_pred             HHHHHhccc
Q 021589          205 KLQHHNLKC  213 (310)
Q Consensus       205 ~~Q~e~L~~  213 (310)
                      +.-++++..
T Consensus        83 ~~A~~~~~~   91 (187)
T PRK00107         83 AFLREVAAE   91 (187)
T ss_pred             HHHHHHHHH
Confidence            877766543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.42  E-value=0.064  Score=48.34  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=37.1

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+|+|||+|.++.-+.+....      ..+++-||++|.+.+.-++++..
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~------~g~V~~vD~~~~~~~~A~~~~~~  124 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGR------DGLVVSIERIPELAEKAERRLRK  124 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence            3459999999999999866554321      13689999999999988887754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14967 putative methyltransferase; Provisional

Probab=95.41  E-value=0.092  Score=47.59  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=33.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+.+.    +    ..+++.||+|+.+.+..++++.
T Consensus        38 ~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~   80 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL   80 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            58999999999998766542    1    1368999999998887666554

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=95.40  E-value=0.14  Score=50.75  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=40.6

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +..+.+.++....-+|+|+|||+|.++..+.+..        ..+++-||+|+.+.+.-+++..
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--------g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--------GVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--------CCEEEEEeCCHHHHHHHHHHhc
Confidence            3334455554444599999999999998775432        1478999999999988777664

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.34  E-value=0.047  Score=48.35  Aligned_cols=45  Identities=18%  Similarity=0.177  Sum_probs=35.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|.++..+.+.   .|.    .+++.||+||.+.+.-++++.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~---~~~----~~V~~vD~s~~~~~~a~~n~~   85 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLL---CPK----GRVIAIERDEEVVNLIRRNCD   85 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHH---CCC----CEEEEEeCCHHHHHHHHHHHH
Confidence            358999999999999887643   222    479999999999887777664

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=95.33  E-value=0.079  Score=53.86  Aligned_cols=66  Identities=14%  Similarity=0.152  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      -..|.++|...+.+..+..... ....|+.+|||||-|..-.+++.+...   .+.+++.||.||.....
T Consensus       163 Y~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~~~  229 (448)
T PF05185_consen  163 YDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAVVT  229 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHHHH
Confidence            3567888877665554433211 246899999999999998888864321   34689999999965543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=95.30  E-value=0.07  Score=48.86  Aligned_cols=42  Identities=12%  Similarity=0.173  Sum_probs=32.9

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .-+|+|+|||+|.++..+...         ..+++.+|+||.+.+..+++.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~~~D~s~~~l~~a~~~~   84 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER---------GSQVTALDLSPPMLAQARQKD   84 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHhhC
Confidence            458999999999988765321         137999999999988777764

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.30  E-value=0.071  Score=47.42  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..++...   |   ...+++.+|+|+.+.+.-++++.
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~   97 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR   97 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence            3699999999999999887754   2   13589999999998876666654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=95.25  E-value=0.06  Score=47.93  Aligned_cols=53  Identities=11%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +++....-.|+|+|||+|.++..+++.+..      ..+++.||+|+.+.+.-++++..
T Consensus        35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~------~~~v~avD~~~~~~~~a~~n~~~   87 (198)
T PRK00377         35 KLRLRKGDMILDIGCGTGSVTVEASLLVGE------TGKVYAVDKDEKAINLTRRNAEK   87 (198)
T ss_pred             HcCCCCcCEEEEeCCcCCHHHHHHHHHhCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence            345545569999999999999998776421      24799999999998877776643

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.18  E-value=0.046  Score=43.52  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=38.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|+++..+++..        ..+++-||++|...+..+.++..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~   45 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR   45 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred             CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence            489999999999999988763        24799999999999999988864

...

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=95.17  E-value=0.078  Score=49.56  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .+|+|+|||+|.++..+.+.+...    ....++-||+|+.+.+.-+++.
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~~  132 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKRY  132 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHhC
Confidence            579999999999999987764211    1146899999999988776654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=95.15  E-value=0.043  Score=48.86  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|.++..+++.   +|+    ..++-||+|+.+.+.-++++.
T Consensus        18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~~   61 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKAN   61 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHHH
Confidence            48999999999999888754   454    479999999998776555543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=95.12  E-value=0.093  Score=53.98  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=36.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+|+|+|||+|.++..++..+   |.    .+++.||+||...+..++++.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~---p~----~~v~avDis~~al~~A~~N~~  183 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL---PN----ANVIATDISLDAIEVAKSNAI  183 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC---CC----CeEEEEECCHHHHHHHHHHHH
Confidence            3589999999999999887643   32    479999999998888777664

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=95.11  E-value=0.082  Score=51.02  Aligned_cols=71  Identities=23%  Similarity=0.353  Sum_probs=53.0

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|=||-=||.     |-+..++++...+.....+..|+|+|+|+|.++..+|..+.       +.+++-||.|++-.+.-
T Consensus       121 pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-------~~~v~AiD~S~~Ai~La  188 (328)
T KOG2904|consen  121 PGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-------QCTVTAIDVSKAAIKLA  188 (328)
T ss_pred             CCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-------CceEEEEeccHHHHHHH
Confidence            5777777775     44556666666665555556899999999999999988763       25899999999876654


Q ss_pred             HHh
Q 021589          208 HHN  210 (310)
Q Consensus       208 ~e~  210 (310)
                      .++
T Consensus       189 ~eN  191 (328)
T KOG2904|consen  189 KEN  191 (328)
T ss_pred             HHH
Confidence            443

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=95.02  E-value=0.092  Score=52.31  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=36.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++..+.+.   .|+    .+++.||+|+...+..++++..
T Consensus       230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence            48999999999998876553   343    4799999999998888877753

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.02  E-value=0.055  Score=55.41  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=56.0

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCc-cccceEEEEecChhhHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF-TESLHIHLVECSPTLQK  205 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~-~~~l~y~iVE~SP~Lr~  205 (310)
                      +.|-|+|++.|.....+++....    .........+|+|.|||+|.|...+++.+...... ......+.+|+++.+..
T Consensus         2 ~~GqfyTP~~ia~~mv~~~~~~~----~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~   77 (524)
T TIGR02987         2 AYGTFFTPPDIAKAMVANLVNEI----GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK   77 (524)
T ss_pred             CCcccCCcHHHHHHHHHHHhhhc----chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence            36899999999766555433221    10011134699999999999999999987421111 11367899999999988


Q ss_pred             HHHHhccc
Q 021589          206 LQHHNLKC  213 (310)
Q Consensus       206 ~Q~e~L~~  213 (310)
                      .-+.+|..
T Consensus        78 ~a~~~l~~   85 (524)
T TIGR02987        78 RAKKLLGE   85 (524)
T ss_pred             HHHHHHhh
Confidence            77776643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=94.97  E-value=0.096  Score=51.01  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=32.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++-||.|+.+.+.-+++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~---------g~~V~GID~s~~~i~~Ar~~~  173 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM---------GATVTGVDAVDKNVKIARLHA  173 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHH
Confidence            358999999999988765431         137999999999988766543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=94.84  E-value=0.16  Score=48.31  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +|+|+|+|+|.+|..+....   |+    .+++-+|+||.-.+.-+++..
T Consensus       113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na~  155 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENAE  155 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHHH
Confidence            89999999999999887654   33    479999999987776665554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=94.77  E-value=0.086  Score=46.84  Aligned_cols=44  Identities=16%  Similarity=0.205  Sum_probs=33.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+...   .|.    .+++.||.|+.+.+.-++.+.
T Consensus        44 ~~vLDiGcGtG~~s~~la~~---~~~----~~V~~iD~s~~~~~~a~~~~~   87 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIA---RPE----LKLTLLESNHKKVAFLREVKA   87 (181)
T ss_pred             CeEEEecCCCCccHHHHHHH---CCC----CeEEEEeCcHHHHHHHHHHHH
Confidence            59999999999988877532   222    469999999998876665553

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.74  E-value=0.066  Score=40.21  Aligned_cols=41  Identities=20%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             EEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       165 vElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +|+|||+|..+.-+...        ...+++-+|+|+.+.+.-++++..
T Consensus         1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~~   41 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLKN   41 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTTT
T ss_pred             CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhcccc
Confidence            69999999999988765        125799999999988877776653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=94.72  E-value=0.12  Score=45.45  Aligned_cols=51  Identities=16%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +......+|+|+|||+|.++..+++..   |.   ..+++.+|+++.+.+.-++++.
T Consensus        35 ~~~~~~~~vldiG~G~G~~~~~~~~~~---~~---~~~~~~iD~~~~~~~~~~~~~~   85 (223)
T TIGR01934        35 IGVFKGQKVLDVACGTGDLAIELAKSA---PD---RGKVTGVDFSSEMLEVAKKKSE   85 (223)
T ss_pred             hccCCCCeEEEeCCCCChhHHHHHHhc---CC---CceEEEEECCHHHHHHHHHHhc
Confidence            333345799999999999998887654   22   1479999999998876666553

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=94.66  E-value=0.076  Score=47.42  Aligned_cols=43  Identities=14%  Similarity=0.088  Sum_probs=33.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+|+|+|||+|.++.-+.+.         ..+++.||+|+.+.+.-+++..
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~   73 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA   73 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            358999999999998776542         1379999999998877666553

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.59  E-value=0.054  Score=45.28  Aligned_cols=39  Identities=28%  Similarity=0.531  Sum_probs=30.9

Q ss_pred             HHHH-HHHHHHHHHHHHcCCC-CcceEEEecCCchHHHHHH
Q 021589          140 MFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADL  178 (310)
Q Consensus       140 ~FGe-~Ia~~~~~~w~~~g~p-~~l~IvElGaG~GtLa~DI  178 (310)
                      +|=. .||.+++.+|+.+..+ .+...|+||||+|-|..=+
T Consensus        36 VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL   76 (112)
T PF07757_consen   36 VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYIL   76 (112)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHH
Confidence            4433 4999999999988655 5678999999999987643

; GO: 0008168 methyltransferase activity

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.45  Score=43.96  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=49.9

Q ss_pred             CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       123 ~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      -++| .|-++..|.+-       |+.+    +.+.....-.|+|||+|+|..++ ||..+-.        +++-||.-+.
T Consensus        47 lpi~-~gqtis~P~~v-------A~m~----~~L~~~~g~~VLEIGtGsGY~aA-vla~l~~--------~V~siEr~~~  105 (209)
T COG2518          47 LPIG-CGQTISAPHMV-------ARML----QLLELKPGDRVLEIGTGSGYQAA-VLARLVG--------RVVSIERIEE  105 (209)
T ss_pred             ccCC-CCceecCcHHH-------HHHH----HHhCCCCCCeEEEECCCchHHHH-HHHHHhC--------eEEEEEEcHH
Confidence            4566 77888888653       2222    22233233599999999999886 5554422        6899999999


Q ss_pred             hHHHHHHhcccc
Q 021589          203 LQKLQHHNLKCM  214 (310)
Q Consensus       203 Lr~~Q~e~L~~~  214 (310)
                      |.+.-+++|...
T Consensus       106 L~~~A~~~L~~l  117 (209)
T COG2518         106 LAEQARRNLETL  117 (209)
T ss_pred             HHHHHHHHHHHc
Confidence            999999988653

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.52  E-value=0.15  Score=45.51  Aligned_cols=62  Identities=13%  Similarity=0.063  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ......|+.+.+...+ .....+|+|+|||+|.++..+.+.   .      .+++.+|.|+.+.+.-++++.
T Consensus        26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~   88 (224)
T TIGR01983        26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK   88 (224)
T ss_pred             hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence            3334566665555432 124569999999999988876542   1      249999999998776655554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=94.38  E-value=0.072  Score=49.87  Aligned_cols=88  Identities=20%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhccc
Q 021589          152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSL  231 (310)
Q Consensus       152 ~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~  231 (310)
                      +..+.+.-.+-+|++||||.|....-+.+.+   |+    -.+.-||.||.|.+.-+++|....-              .
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~Rw---P~----A~i~GiDsS~~Mla~Aa~rlp~~~f--------------~   80 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRW---PD----AVITGIDSSPAMLAKAAQRLPDATF--------------E   80 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhC---CC----CeEeeccCCHHHHHHHHHhCCCCce--------------e
Confidence            3344444456799999999999998887654   53    2688999999999988888864110              0


Q ss_pred             CCCCeEEecccccCCCCCCEEEEEeccccccccee
Q 021589          232 AGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQ  266 (310)
Q Consensus       232 ~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh~  266 (310)
                      .++--.|.      |.....+|+||-+|-=||-|.
T Consensus        81 ~aDl~~w~------p~~~~dllfaNAvlqWlpdH~  109 (257)
T COG4106          81 EADLRTWK------PEQPTDLLFANAVLQWLPDHP  109 (257)
T ss_pred             cccHhhcC------CCCccchhhhhhhhhhccccH
Confidence            11222353      222235889999888888764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.37  E-value=0.31  Score=43.92  Aligned_cols=44  Identities=14%  Similarity=0.178  Sum_probs=33.6

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ....|+|+|||+|.++..+.+..         .+++.+|+|+.+.+.-++++.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~---------~~v~~iD~s~~~~~~a~~~~~   91 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLG---------ADVTGIDASEENIEVARLHAL   91 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC---------CeEEEEcCCHHHHHHHHHHHH
Confidence            34689999999999987665421         369999999999776665543

>PRK05785 hypothetical protein; Provisional

Probab=94.37  E-value=0.13  Score=47.11  Aligned_cols=42  Identities=10%  Similarity=0.218  Sum_probs=33.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      +-+|+|+|||+|.++..+.+..        ..+++-||+|+.|.+.-+++
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHhc
Confidence            3599999999999988765542        13799999999998876653

>PRK00811 spermidine synthase; Provisional

Probab=94.35  E-value=0.13  Score=48.82  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=50.9

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|..-++-.---.|=|+++.-.+.     -.+.+-+|+++|+|.|.+++.+|+.    +.   ..++++||++|.+.+.-
T Consensus        49 Dg~~q~~~~de~~Y~e~l~h~~~~-----~~~~p~~VL~iG~G~G~~~~~~l~~----~~---~~~V~~VEid~~vv~~a  116 (283)
T PRK00811         49 DGCVMTTERDEFIYHEMMTHVPLF-----AHPNPKRVLIIGGGDGGTLREVLKH----PS---VEKITLVEIDERVVEVC  116 (283)
T ss_pred             CCeeeecCcchhhHHHHhhhHHHh-----hCCCCCEEEEEecCchHHHHHHHcC----CC---CCEEEEEeCCHHHHHHH
Confidence            356655533334566666543322     1234569999999999999998753    21   13799999999999988


Q ss_pred             HHhccc
Q 021589          208 HHNLKC  213 (310)
Q Consensus       208 ~e~L~~  213 (310)
                      ++.+..
T Consensus       117 ~~~~~~  122 (283)
T PRK00811        117 RKYLPE  122 (283)
T ss_pred             HHHhHH
Confidence            887753

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.35  Score=44.22  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=35.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -.|+++|||+|.|+...+-        +.+-+++-||+.|...+.-+++..+
T Consensus        47 ~~V~DlG~GTG~La~ga~~--------lGa~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          47 KTVLDLGAGTGILAIGAAL--------LGASRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             CEEEEcCCCcCHHHHHHHh--------cCCcEEEEEecCHHHHHHHHHHHHh
Confidence            4799999999999987642        2334789999999999988887654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=94.25  E-value=0.26  Score=47.23  Aligned_cols=55  Identities=11%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ++.+...+++++++|+|-+|..||++....+.. ..-+++++|+||.+-+.-++|-
T Consensus        96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkqRa  150 (296)
T KOG1540|consen   96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQRA  150 (296)
T ss_pred             cCCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHHHH
Confidence            344455899999999999999999998643222 2257999999999977544443

>PRK04457 spermidine synthase; Provisional

Probab=94.24  E-value=0.086  Score=49.56  Aligned_cols=47  Identities=17%  Similarity=0.347  Sum_probs=38.4

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+-+|+|||+|.|+++..+++..   |+    .+++.||++|.+.+.-++.+.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~---p~----~~v~~VEidp~vi~~A~~~f~  111 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYL---PD----TRQTAVEINPQVIAVARNHFE  111 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhC---CC----CeEEEEECCHHHHHHHHHHcC
Confidence            344589999999999999887653   43    579999999999998887764

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=94.23  E-value=0.16  Score=47.56  Aligned_cols=50  Identities=12%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++.+...+|+|+|||+|.++..+...   +     ..+++.||+||.+.+..++++.
T Consensus        47 ~l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~~~~~   96 (263)
T PTZ00098         47 DIELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAKLRNS   96 (263)
T ss_pred             hCCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHHHHcC
Confidence            345455569999999999998776532   1     1479999999999888777654

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=94.19  E-value=0.086  Score=49.87  Aligned_cols=74  Identities=18%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ..|-|+|+.+|..+..+++           .....-.|++-.||+|.|...++++++....-....+++-+|+++.....
T Consensus        24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l   92 (311)
T PF02384_consen   24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL   92 (311)
T ss_dssp             SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred             ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence            4688999999988766655           22233479999999999999999887432111233578999999999887


Q ss_pred             HHHhc
Q 021589          207 QHHNL  211 (310)
Q Consensus       207 Q~e~L  211 (310)
                      -+-+|
T Consensus        93 a~~nl   97 (311)
T PF02384_consen   93 AKLNL   97 (311)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            66544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00417 speE spermidine synthase

Probab=94.12  E-value=0.16  Score=47.67  Aligned_cols=63  Identities=19%  Similarity=0.382  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..|-|+++.--+     +..+.+-+|+|+|+|+|.++..+++..       ...++++||+++.+.+.-++.+..
T Consensus        56 ~~y~e~l~~~~l-----~~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        56 FIYHEMIAHVPL-----FTHPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             HHHHHHhhhhHh-----hcCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHHHHhHh
Confidence            456666654221     123344599999999999998887642       124799999999998877776643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=94.09  E-value=0.22  Score=46.59  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=35.5

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      +.+...+|+|+|||+|.++..+.+...  |    ..+++-||+|+.|.+.-+++.
T Consensus        70 ~~~~~~~VLDlGcGtG~~~~~la~~~~--~----~~~V~gvD~S~~ml~~A~~r~  118 (261)
T PLN02233         70 GAKMGDRVLDLCCGSGDLAFLLSEKVG--S----DGKVMGLDFSSEQLAVAASRQ  118 (261)
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHh
Confidence            333446999999999998876654321  1    136899999999988766654

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=94.07  E-value=0.27  Score=46.59  Aligned_cols=43  Identities=19%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+++.    +    .-+++.||+||.+.+.-++++.
T Consensus       161 ~~VLDvGcGsG~lai~aa~~----g----~~~V~avDid~~al~~a~~n~~  203 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKL----G----AAKVVGIDIDPLAVESARKNAE  203 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            59999999999998765431    1    1379999999998887777664

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.03  E-value=0.12  Score=46.08  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=32.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      +.+|+|+|||+|.++..+...         ..+++.||+||.+.+.-+++.
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~   72 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK   72 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence            459999999999999877542         136899999999887655544

Part of a tellurite-reducing operon tehA and tehB

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.99  E-value=0.52  Score=47.37  Aligned_cols=44  Identities=11%  Similarity=0.130  Sum_probs=33.7

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...+|+|+|||+|.++..+....        ..+++-||+|+.+.+..+++.
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~  309 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA  309 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence            34589999999999887665432        147999999999888766654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=93.99  E-value=0.61  Score=47.29  Aligned_cols=45  Identities=16%  Similarity=0.218  Sum_probs=35.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++..+...   .|.    .+++.||+||.+.+.-++++..
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~---~p~----a~VtAVDiS~~ALe~AreNa~~  297 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALE---RPD----AFVRASDISPPALETARKNAAD  297 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence            38999999999999877653   232    4789999999999888777653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=93.81  E-value=0.27  Score=46.46  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=33.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+...         ..+++-||+|+.+.+..+++..
T Consensus       122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~  163 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE  163 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999998776542         1479999999998886666553

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=93.79  E-value=0.12  Score=37.93  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=29.9

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      +|+|+|||.|.++..++.    .    ...+|+.+|.++......+
T Consensus         1 ~ildig~G~G~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~   38 (107)
T cd02440           1 RVLDLGCGTGALALALAS----G----PGARVTGVDISPVALELAR   38 (107)
T ss_pred             CeEEEcCCccHHHHHHhc----C----CCCEEEEEeCCHHHHHHHH
Confidence            489999999998887765    1    1358999999998876555

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=93.78  E-value=0.32  Score=47.44  Aligned_cols=49  Identities=24%  Similarity=0.225  Sum_probs=38.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...|||+|||+|+=.+-+|+++....   ...+|+-||+|...-+.-.++|.
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~---~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQK---KSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcC---CCceEEEEECCHHHHHHHHHhhh
Confidence            35899999999999999999985311   12689999999876666666665

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=93.75  E-value=0.23  Score=48.27  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++..
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~  187 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK  187 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence            469999999999999877652         1369999999999887776654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.62  E-value=0.21  Score=48.75  Aligned_cols=46  Identities=22%  Similarity=0.274  Sum_probs=34.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-.|+|+|||+|.++.-+.+.....      -.++.||++|.+.+.-++++.
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~------g~VvgVDis~~~l~~Ar~~l~  126 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEK------GLVVSVEYSRKICEIAKRNVR  126 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCC------CEEEEEECCHHHHHHHHHHHH
Confidence            3589999999999998876643211      258899999999887666554

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=93.51  E-value=0.28  Score=46.08  Aligned_cols=51  Identities=14%  Similarity=0.235  Sum_probs=41.5

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ++.....+|+|+|||||.+|..+.+...       ..+++.+|+|+.|-+.-++++..
T Consensus        47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-------~g~v~~~D~s~~ML~~a~~k~~~   97 (238)
T COG2226          47 LGIKPGDKVLDVACGTGDMALLLAKSVG-------TGEVVGLDISESMLEVAREKLKK   97 (238)
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcC-------CceEEEEECCHHHHHHHHHHhhc
Confidence            3443457999999999999998876542       35899999999999999998864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=93.41  E-value=0.42  Score=44.33  Aligned_cols=46  Identities=17%  Similarity=0.197  Sum_probs=34.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|.++..+++...  +    ..+++.||+|+.+.+.-+++..
T Consensus        78 g~~VLDiG~G~G~~~~~~a~~~g--~----~~~v~gvD~s~~~l~~A~~~~~  123 (272)
T PRK11873         78 GETVLDLGSGGGFDCFLAARRVG--P----TGKVIGVDMTPEMLAKARANAR  123 (272)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhC--C----CCEEEEECCCHHHHHHHHHHHH
Confidence            35999999999998775544321  1    2368999999999888777653

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=93.36  E-value=0.15  Score=48.14  Aligned_cols=57  Identities=21%  Similarity=0.328  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      |-+||.|+       ..+..-+|+|+|+|+|.++.-+...   .+    ..+++.||+.+.+.++-++++.
T Consensus        33 aiLL~~~~-------~~~~~~~IlDlGaG~G~l~L~la~r---~~----~a~I~~VEiq~~~a~~A~~nv~   89 (248)
T COG4123          33 AILLAAFA-------PVPKKGRILDLGAGNGALGLLLAQR---TE----KAKIVGVEIQEEAAEMAQRNVA   89 (248)
T ss_pred             HHHHHhhc-------ccccCCeEEEecCCcCHHHHHHhcc---CC----CCcEEEEEeCHHHHHHHHHHHH
Confidence            55677776       2233569999999999988755332   12    2579999999999998887764

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=93.31  E-value=0.52  Score=46.36  Aligned_cols=44  Identities=14%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..+|+|+|||+|.++..+++..   +.    .+++.||.|+.+.+.-+++.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k~  157 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQKE  157 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhh
Confidence            3699999999999988776543   22    47999999999877665543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=93.31  E-value=0.31  Score=44.65  Aligned_cols=48  Identities=25%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM  214 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~  214 (310)
                      ..+++|+|+|+|.+++=+-.-....      -+++-||+.|.|.+.-+++|...
T Consensus        73 g~~VLeIGtGsGY~aAlla~lvg~~------g~Vv~vE~~~~l~~~A~~~l~~~  120 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLAHLVGPV------GRVVSVERDPELAERARRNLARL  120 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHHSTT------EEEEEEESBHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCcHHHHHHHHhcCcc------ceEEEECccHHHHHHHHHHHHHh
Confidence            3599999999999998544332211      25889999999999988888753

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=93.26  E-value=0.39  Score=46.37  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=53.1

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhh
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEER  226 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~  226 (310)
                      +-|++.+++...+. -+|+++|||+|-|+-.-+.--        +-+++-+|+.|.-.+.-+++.....           
T Consensus       149 ~lcl~~l~~~~~~g-~~vLDvG~GSGILaiaA~klG--------A~~v~a~DiDp~Av~~a~~N~~~N~-----------  208 (295)
T PF06325_consen  149 RLCLELLEKYVKPG-KRVLDVGCGSGILAIAAAKLG--------AKKVVAIDIDPLAVEAARENAELNG-----------  208 (295)
T ss_dssp             HHHHHHHHHHSSTT-SEEEEES-TTSHHHHHHHHTT--------BSEEEEEESSCHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHhccCC-CEEEEeCCcHHHHHHHHHHcC--------CCeEEEecCCHHHHHHHHHHHHHcC-----------
Confidence            34445555555544 399999999999987654321        1368999999998777666654311           


Q ss_pred             hhcccCCCCeEEecccccCCCCCCEEEEEecccccc
Q 021589          227 TISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL  262 (310)
Q Consensus       227 ~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDAL  262 (310)
                           ....+.... ..+.+.+..-+|+||=+.|-|
T Consensus       209 -----~~~~~~v~~-~~~~~~~~~dlvvANI~~~vL  238 (295)
T PF06325_consen  209 -----VEDRIEVSL-SEDLVEGKFDLVVANILADVL  238 (295)
T ss_dssp             ------TTCEEESC-TSCTCCS-EEEEEEES-HHHH
T ss_pred             -----CCeeEEEEE-ecccccccCCEEEECCCHHHH
Confidence                 112444432 233444434789999665543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK04266 fibrillarin; Provisional

Probab=93.16  E-value=0.34  Score=44.74  Aligned_cols=50  Identities=14%  Similarity=0.113  Sum_probs=35.6

Q ss_pred             HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      +.++.....+|+|+|||+|.++..+.+...       .-+++-||+|+.+.+...++
T Consensus        66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~  115 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV  115 (226)
T ss_pred             hhCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence            334544446999999999999888765431       13699999999877654443

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=92.82  E-value=0.47  Score=46.06  Aligned_cols=57  Identities=14%  Similarity=0.203  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-|++..++...+. -+++++|||+|-||-..+.-        .+-+.+-+|+-|.-.+.-+++..
T Consensus       150 ~lcL~~Le~~~~~g-~~vlDvGcGSGILaIAa~kL--------GA~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         150 SLCLEALEKLLKKG-KTVLDVGCGSGILAIAAAKL--------GAKKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             HHHHHHHHHhhcCC-CEEEEecCChhHHHHHHHHc--------CCceEEEecCCHHHHHHHHHHHH
Confidence            34556666665543 59999999999999876542        22368899999877776666554

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=92.74  E-value=0.14  Score=47.56  Aligned_cols=48  Identities=19%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+++|||+|.++..+.+.+.  |    ..+++.||+|+.|.+.-++++..
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~--~----~~~v~~vD~s~~ML~~a~~k~~~   94 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVG--P----NGKVVGVDISPGMLEVARKKLKR   94 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCC--C----ccEEEEecCCHHHHHHHHHHHHh
Confidence            345999999999999888865432  1    23799999999999988887764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14968 putative methyltransferase; Provisional

Probab=92.70  E-value=0.45  Score=40.83  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=33.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|.++..+++.         ..+++.+|+||.+.+.-++++.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~   66 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK   66 (188)
T ss_pred             CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence            48999999999998888664         1378999999988776666553

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=92.59  E-value=0.67  Score=42.60  Aligned_cols=50  Identities=18%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++.+.--+++|+|||.|.|...+....         -+++.+|+||.-.++-++|+..
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rC---------d~LlavDis~~Al~~Ar~Rl~~   87 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRC---------DRLLAVDISPRALARARERLAG   87 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGE---------EEEEEEES-HHHHHHHHHHTTT
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhh---------CceEEEeCCHHHHHHHHHhcCC
Confidence            3566655689999999999999874321         2689999999999999999975

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=92.56  E-value=0.35  Score=44.74  Aligned_cols=43  Identities=16%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+.+.    .    .-+++-||+||.+.+.-++++.
T Consensus       121 ~~VLDiGcGsG~l~i~~~~~----g----~~~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAKL----G----AKKVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            58999999999988754321    1    1258999999999887666654

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=92.39  E-value=0.25  Score=44.21  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=33.8

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +|+|+|||+|.++..+.+..   |.    .+++-||+|+.+.+.-++++.
T Consensus         2 ~vLDiGcG~G~~~~~la~~~---~~----~~v~gid~s~~~~~~a~~~~~   44 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERH---PH----LQLHGYTISPEQAEVGRERIR   44 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            69999999999988776542   32    478899999999887776653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=92.35  E-value=0.96  Score=43.95  Aligned_cols=75  Identities=25%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             CCCCCeecCCCh----hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589          126 GAEGDFITSPEV----SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (310)
Q Consensus       126 G~~GDFiTSpeI----s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP  201 (310)
                      |...-|+|.|-|    .--+|--+      +.+.+..+..-+|+++|||-|-|..-+.+.   .|+    .+++|||+|.
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p~----~~vtmvDvn~  192 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SPQ----AKLTLVDVNA  192 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CCC----CeEEEEecCH
Confidence            677889999886    12233221      222333333348999999999999887654   443    5899999998


Q ss_pred             hhHHHHHHhccc
Q 021589          202 TLQKLQHHNLKC  213 (310)
Q Consensus       202 ~Lr~~Q~e~L~~  213 (310)
                      .-.+.-++++..
T Consensus       193 ~Av~~ar~Nl~~  204 (300)
T COG2813         193 RAVESARKNLAA  204 (300)
T ss_pred             HHHHHHHHhHHH
Confidence            888777777754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=92.28  E-value=0.23  Score=41.11  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +++++|||.|.++..+++.   .|.    .+++.||++|.+.+..++++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~---~~~----~~v~~~E~~~~~~~~l~~~~~   43 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARK---GAE----GRVIAFEPLPDAYEILEENVK   43 (143)
T ss_pred             CEEEccCCccHHHHHHHHh---CCC----CEEEEEecCHHHHHHHHHHHH
Confidence            4899999999998776553   232    379999999999987777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.14  E-value=0.37  Score=45.70  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             HHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589          153 WEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (310)
Q Consensus       153 w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP  201 (310)
                      .++.|.. ....+||+|||+|.|+.-|-..+...  -.....|++||...
T Consensus        10 l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~--~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   10 LEQRGLLNPDSCFVEFGAGRGELSRWVAQALQED--KPSNSRFVLIDRAS   57 (259)
T ss_pred             HHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhc--ccCCccEEEEecCc
Confidence            3444442 44699999999999999998877432  01224799999843

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>TIGR00438 rrmJ cell division protein FtsJ

Probab=91.97  E-value=0.54  Score=41.27  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      ..-+|+|+|||+|.++..+.+....      ..+++.||+||.+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~------~~~v~~vDis~~~   69 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGG------KGRVIAVDLQPMK   69 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCC------CceEEEEeccccc
Confidence            3458999999999999888765421      2368999999964

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=91.85  E-value=0.58  Score=42.50  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+++|+|||+|.++...|...        +.+++.||+++...+.-++++..
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~--------a~~V~~vE~~~~a~~~a~~Nl~~   98 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRY--------AAGATLLEMDRAVAQQLIKNLAT   98 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcC--------CCEEEEEECCHHHHHHHHHHHHH
Confidence            489999999999998655432        13799999999999887777654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=91.52  E-value=0.26  Score=44.73  Aligned_cols=35  Identities=14%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecCh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP  201 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP  201 (310)
                      .-.|+|+|||+|.++..+++....      ...++-||++|
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~------~~~V~aVDi~~   86 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGD------KGRVIACDILP   86 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCC------CceEEEEeccc
Confidence            358999999999999888775421      13689999998

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=91.47  E-value=0.58  Score=44.87  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=33.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|+++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus       175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~  216 (315)
T PRK03522        175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA  216 (315)
T ss_pred             CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            48999999999998777542         1368999999999987776654

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=91.41  E-value=0.59  Score=41.08  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHH---HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWE---QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~---~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +..+|.|+.+.-.   ....-...+|+|+|||.|..+..+....       ...++++-|..+.+...+ .++.
T Consensus        24 a~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-------~~~~Vv~TD~~~~l~~l~-~Ni~   89 (173)
T PF10294_consen   24 ALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-------GAARVVLTDYNEVLELLR-RNIE   89 (173)
T ss_dssp             HHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHH-HHHH
T ss_pred             HHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-------CCceEEEeccchhhHHHH-HHHH
Confidence            3456666655321   1111234599999999996665443321       224799999999444444 4443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02366 spermidine synthase

Probab=91.20  E-value=0.84  Score=44.23  Aligned_cols=73  Identities=16%  Similarity=0.322  Sum_probs=49.6

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |..-++..---.|-|+++.-.+.     ..|.+-+|+++|+|.|.+++.++++    |..   .++++||+++.+.+.-+
T Consensus        65 g~~q~~~~de~~Y~e~l~h~~l~-----~~~~pkrVLiIGgG~G~~~rellk~----~~v---~~V~~VEiD~~Vi~~ar  132 (308)
T PLN02366         65 GVIQLTERDECAYQEMITHLPLC-----SIPNPKKVLVVGGGDGGVLREIARH----SSV---EQIDICEIDKMVIDVSK  132 (308)
T ss_pred             CEeeecCccHHHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCC---CeEEEEECCHHHHHHHH
Confidence            44433322234677777654332     1344569999999999999888764    322   47999999999988888


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +.+..
T Consensus       133 ~~f~~  137 (308)
T PLN02366        133 KFFPD  137 (308)
T ss_pred             Hhhhh
Confidence            77653

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=91.18  E-value=0.89  Score=41.50  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|||.+.|.=+..+.+.+.      +.-+++.||.+|...+..++.+..
T Consensus        47 k~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~   92 (205)
T PF01596_consen   47 KRVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK   92 (205)
T ss_dssp             SEEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             ceEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence            4999999999999988887652      235899999999999998887764

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=91.18  E-value=0.71  Score=46.45  Aligned_cols=59  Identities=17%  Similarity=0.125  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+.+..++++..   .......|+|+|||+|+++..+.+..         .+++-||+|+.+.+.-++++.
T Consensus       282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~  340 (443)
T PRK13168        282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR  340 (443)
T ss_pred             HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence            344445444432   22223589999999999998776532         268999999999887776654

>PRK06922 hypothetical protein; Provisional

Probab=90.98  E-value=0.46  Score=50.68  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+.+.   +|+    .+++-||+|+.+.+..++++.
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~---~P~----~kVtGIDIS~~MLe~Ararl~  463 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEE---TED----KRIYGIDISENVIDTLKKKKQ  463 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHhh
Confidence            59999999999988766543   343    589999999998877666543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=90.84  E-value=0.79  Score=43.58  Aligned_cols=54  Identities=26%  Similarity=0.361  Sum_probs=43.9

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM  214 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~  214 (310)
                      .+|...--+|+|.|.|+|.|+..++++.....      +++-+|+-+...+.-+++|..+
T Consensus        89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G------~v~tyE~r~d~~k~A~~Nl~~~  142 (256)
T COG2519          89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEG------HVTTYEIREDFAKTARENLSEF  142 (256)
T ss_pred             HcCCCCCCEEEEcccCchHHHHHHHHhhCCCc------eEEEEEecHHHHHHHHHHHHHh
Confidence            34655456999999999999999999874332      6888999999999999988763

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.83  E-value=1.7  Score=41.13  Aligned_cols=48  Identities=19%  Similarity=0.254  Sum_probs=36.0

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|-+|+++|+|.||-+-.+...+.   .   ..+|+.||.|+.+.+.=+..+..
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~---~---~~~~~~vd~s~~~~~l~~~l~~~   80 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWP---S---LKEYTCVDRSPEMLELAKRLLRA   80 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhc---C---ceeeeeecCCHHHHHHHHHHHhc
Confidence            456999999999997665555443   2   24799999999999876665543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=90.73  E-value=0.43  Score=42.12  Aligned_cols=39  Identities=21%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      -+|+|+|||+|.++..+.+..        ...++-||+|+.+.+.-+
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~--------~~~~~giD~s~~~i~~a~   53 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEK--------QVRGYGIEIDQDGVLACV   53 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhcc--------CCcEEEEeCCHHHHHHHH
Confidence            489999999999876654321        124688999998876543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=90.66  E-value=0.58  Score=46.99  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=32.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      -.+||||||+|.++..+.+.   .|+    ..++-||+++.+.+.-.+++
T Consensus       124 p~vLEIGcGsG~~ll~lA~~---~P~----~~~iGIEI~~~~i~~a~~ka  166 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKN---NPN----KLFIGIEIHTPSIEQVLKQI  166 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHh---CCC----CCEEEEECCHHHHHHHHHHH
Confidence            38999999999988776543   454    47999999998866554444

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=90.54  E-value=0.85  Score=42.11  Aligned_cols=46  Identities=13%  Similarity=0.076  Sum_probs=36.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|+|+|.-+.-+.+.+..      .-+++-||++|...+.-++.+..
T Consensus        70 ~~vLEiGt~~G~s~l~la~~~~~------~g~v~tiD~d~~~~~~A~~n~~~  115 (234)
T PLN02781         70 KNTLEIGVFTGYSLLTTALALPE------DGRITAIDIDKEAYEVGLEFIKK  115 (234)
T ss_pred             CEEEEecCcccHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence            38999999999977777665421      24799999999999988887754

>TIGR00452 methyltransferase, putative

Probab=90.38  E-value=1  Score=43.71  Aligned_cols=44  Identities=11%  Similarity=0.104  Sum_probs=31.2

Q ss_pred             HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      ..++.-..-+|+|+|||+|.++..++..   .+     -.++-||+|+.+..
T Consensus       115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~---g~-----~~v~GiDpS~~ml~  158 (314)
T TIGR00452       115 PHLSPLKGRTILDVGCGSGYHMWRMLGH---GA-----KSLVGIDPTVLFLC  158 (314)
T ss_pred             HhcCCCCCCEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence            3344333359999999999998777643   12     25899999998764

Known examples to date are restricted to the proteobacteria.

>PRK01581 speE spermidine synthase; Validated

Probab=90.32  E-value=1.1  Score=44.73  Aligned_cols=59  Identities=20%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      -+|=|+|+.-.+.     -.+.+-+|+++|+|.|..++.+|++    +.   ..++++||++|.+.+.-++
T Consensus       134 ~iYHE~Lvhp~m~-----~h~~PkrVLIIGgGdG~tlrelLk~----~~---v~~It~VEIDpeVIelAr~  192 (374)
T PRK01581        134 QIYHEALVHPIMS-----KVIDPKRVLILGGGDGLALREVLKY----ET---VLHVDLVDLDGSMINMARN  192 (374)
T ss_pred             HHHHHHHHHHHHH-----hCCCCCEEEEECCCHHHHHHHHHhc----CC---CCeEEEEeCCHHHHHHHHh
Confidence            4688888764422     2334469999999999988888764    21   1379999999999887775

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=89.85  E-value=0.89  Score=44.86  Aligned_cols=42  Identities=10%  Similarity=0.040  Sum_probs=33.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|+++.-+...         ..+++.||++|...+.-++++.
T Consensus       235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~  276 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ  276 (374)
T ss_pred             CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence            38999999999998776532         1268999999999987777664

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PTZ00146 fibrillarin; Provisional

Probab=89.74  E-value=0.77  Score=44.42  Aligned_cols=39  Identities=18%  Similarity=0.112  Sum_probs=30.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      .-+|+|+|||+|+++..+.+.....      =.++-||+|+.+.+
T Consensus       133 G~~VLDLGaG~G~~t~~lAdiVG~~------G~VyAVD~s~r~~~  171 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHVSDLVGPE------GVVYAVEFSHRSGR  171 (293)
T ss_pred             CCEEEEeCCcCCHHHHHHHHHhCCC------CEEEEEECcHHHHH
Confidence            3589999999999999998765221      25889999987543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=89.60  E-value=1.1  Score=43.09  Aligned_cols=73  Identities=19%  Similarity=0.304  Sum_probs=53.5

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       131 FiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .-|+-.-.-.+-|+++.-.+..     .|.+-+|+-||.|.|.+++.+|++...       -+.++||+.|...+..++.
T Consensus        52 ~q~~e~de~~yhEml~h~~~~a-----h~~pk~VLiiGgGdG~tlRevlkh~~v-------e~i~~VEID~~Vi~~ar~~  119 (282)
T COG0421          52 VQLTERDEFIYHEMLAHVPLLA-----HPNPKRVLIIGGGDGGTLREVLKHLPV-------ERITMVEIDPAVIELARKY  119 (282)
T ss_pred             hhhccchhHHHHHHHHhchhhh-----CCCCCeEEEECCCccHHHHHHHhcCCc-------ceEEEEEcCHHHHHHHHHh
Confidence            3344455567777766544322     233349999999999999999987421       2799999999999999999


Q ss_pred             ccccc
Q 021589          211 LKCMD  215 (310)
Q Consensus       211 L~~~~  215 (310)
                      |....
T Consensus       120 l~~~~  124 (282)
T COG0421         120 LPEPS  124 (282)
T ss_pred             ccCcc
Confidence            97644

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=89.17  E-value=0.88  Score=45.76  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      -+|+|+|||+|.++..+.+..         -+++-||+|+.+.+.-+
T Consensus        39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~   76 (475)
T PLN02336         39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE   76 (475)
T ss_pred             CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence            489999999999999876542         26899999999986543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=89.12  E-value=1.1  Score=40.91  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      -+|+++|||.|+|+..+.+.-        .++-.=||+++....
T Consensus        15 srVLDLGCGdG~LL~~L~~~k--------~v~g~GvEid~~~v~   50 (193)
T PF07021_consen   15 SRVLDLGCGDGELLAYLKDEK--------QVDGYGVEIDPDNVA   50 (193)
T ss_pred             CEEEecCCCchHHHHHHHHhc--------CCeEEEEecCHHHHH
Confidence            499999999999887655431        246788899987544

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=89.00  E-value=0.86  Score=47.62  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      ..|+++|-..+++.--.........|.=+|||||-|...+|++.+..-   .+++.++||.+|.---
T Consensus       346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNAiv  409 (649)
T KOG0822|consen  346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNAIV  409 (649)
T ss_pred             HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcchhh
Confidence            567777776665542211111256888999999999999999986432   4689999999996543

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=88.98  E-value=1.1  Score=40.40  Aligned_cols=47  Identities=17%  Similarity=0.323  Sum_probs=32.1

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      +.+.+ .+||||||.|.++..+..   .+|+    ..|+-||++......-.+++
T Consensus        15 ~~~~~-l~lEIG~G~G~~l~~~A~---~~Pd----~n~iGiE~~~~~v~~a~~~~   61 (195)
T PF02390_consen   15 GNDNP-LILEIGCGKGEFLIELAK---RNPD----INFIGIEIRKKRVAKALRKA   61 (195)
T ss_dssp             TSCCE-EEEEET-TTSHHHHHHHH---HSTT----SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCCC-eEEEecCCCCHHHHHHHH---HCCC----CCEEEEecchHHHHHHHHHH
Confidence            33444 899999999998877654   4566    47999999987765444443

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=88.63  E-value=1.2  Score=43.81  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++|+|||+|+++..+-+..         -+++.||+|+.+.+..++++..
T Consensus       200 ~vlDl~~G~G~~sl~la~~~---------~~v~~vE~~~~av~~a~~n~~~  241 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF---------RRVLATEIAKPSVNAAQYNIAA  241 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHHH
Confidence            69999999999998554332         1699999999999988877643

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=88.38  E-value=1.7  Score=40.91  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=38.1

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ++...--+|+|.|.|+|.|+..+++++...      =+++-.|+.+...+.-++.+..
T Consensus        36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~   87 (247)
T PF08704_consen   36 LDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER   87 (247)
T ss_dssp             TT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence            454334599999999999999999987432      2688899999999888877765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02823 spermine synthase

Probab=88.24  E-value=2  Score=42.23  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |+.-++..---+|=|+++.-.+.     -.|.+-+|+.+|+|.|.+++.+|++.   +    ..++++||+.|.+.+.-+
T Consensus        77 g~~qs~~~de~~YhE~l~h~~l~-----~~~~pk~VLiiGgG~G~~~re~l~~~---~----~~~v~~VEiD~~vv~lar  144 (336)
T PLN02823         77 GKMQSAEADEFVYHESLVHPALL-----HHPNPKTVFIMGGGEGSTAREVLRHK---T----VEKVVMCDIDQEVVDFCR  144 (336)
T ss_pred             CccccccchHHHHHHHHHhHHHh-----hCCCCCEEEEECCCchHHHHHHHhCC---C----CCeEEEEECCHHHHHHHH
Confidence            44443322223577777654332     12345689999999999999888642   1    137999999999999988


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +.+..
T Consensus       145 ~~~~~  149 (336)
T PLN02823        145 KHLTV  149 (336)
T ss_pred             Hhccc
Confidence            87753

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=88.13  E-value=1.6  Score=40.92  Aligned_cols=50  Identities=10%  Similarity=0.307  Sum_probs=36.8

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +|...+..++|+|||+|+.-.       -+| .....+++.||++|.|.+.-.+...+
T Consensus        72 ~gk~~K~~vLEvgcGtG~Nfk-------fy~-~~p~~svt~lDpn~~mee~~~ks~~E  121 (252)
T KOG4300|consen   72 LGKSGKGDVLEVGCGTGANFK-------FYP-WKPINSVTCLDPNEKMEEIADKSAAE  121 (252)
T ss_pred             hcccCccceEEecccCCCCcc-------ccc-CCCCceEEEeCCcHHHHHHHHHHHhh
Confidence            456677899999999998321       011 12346899999999999988887765

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=88.13  E-value=2.5  Score=40.78  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       141 FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+=..-+....++++..+--+|+|||||-|.|+.-..+.   +     ..+++-|..|+...+.-++++.+
T Consensus        53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---y-----~v~V~GvTlS~~Q~~~~~~r~~~  117 (283)
T COG2230          53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---Y-----GVTVVGVTLSEEQLAYAEKRIAA  117 (283)
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH---c-----CCEEEEeeCCHHHHHHHHHHHHH
Confidence            34443344445666777655579999999999998765443   2     25789999999998887777754

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=87.95  E-value=1.7  Score=39.73  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      +..|||+.-..+..+.+.++....-.+++||+|.|......--..    .+   -+-+=||+.|.+.+..++
T Consensus        20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~----~~---~~~~GIEi~~~~~~~a~~   84 (205)
T PF08123_consen   20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQT----GC---KKSVGIEILPELHDLAEE   84 (205)
T ss_dssp             CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH---------SEEEEEE-SHHHHHHHHH
T ss_pred             CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHc----CC---cEEEEEEechHHHHHHHH
Confidence            357888888888888888876656799999999999765543221    11   136889999998775544

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=87.85  E-value=1.4  Score=40.93  Aligned_cols=48  Identities=17%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      |.+..-.+||||+|.|++...+-   ++.|+    ..|+=||+...-...-.+++
T Consensus        45 ~~~~~pi~lEIGfG~G~~l~~~A---~~nP~----~nfiGiEi~~~~v~~~l~k~   92 (227)
T COG0220          45 GNNNAPIVLEIGFGMGEFLVEMA---KKNPE----KNFLGIEIRVPGVAKALKKI   92 (227)
T ss_pred             CCCCCcEEEEECCCCCHHHHHHH---HHCCC----CCEEEEEEehHHHHHHHHHH
Confidence            33332489999999999877664   35676    36999999866554433333

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=87.75  E-value=1.7  Score=43.31  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||.|+++.-+.+..         -+++-||+|+.+.+.-++++.
T Consensus       294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~  335 (431)
T TIGR00479       294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE  335 (431)
T ss_pred             CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence            489999999999998765431         268999999999987777664

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04148 hypothetical protein; Provisional

Probab=87.64  E-value=1.8  Score=37.26  Aligned_cols=55  Identities=13%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchH-HHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .||.|+.+....   .....|+|+|+|.|. +|. .|...        ..+++.||++|...+.-++.
T Consensus         3 ~i~~~l~~~~~~---~~~~kileIG~GfG~~vA~-~L~~~--------G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148          3 TIAEFIAENYEK---GKNKKIVELGIGFYFKVAK-KLKES--------GFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             HHHHHHHHhccc---ccCCEEEEEEecCCHHHHH-HHHHC--------CCEEEEEECCHHHHHHHHHh
Confidence            356666554322   123589999999996 554 44321        13799999999977655554

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=87.59  E-value=1.3  Score=41.98  Aligned_cols=46  Identities=22%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...-+|+|+|||+|+++..+++.   +|+    ++.+++|. |...+.-++++.
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~---~p~----~~~~~~D~-~~~~~~a~~~~~  193 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PGAIDLVNENAA  193 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHH---CCC----CEEEEEec-HHHHHHHHHHHH
Confidence            33459999999999999988775   354    57889997 555555444443

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=87.58  E-value=0.89  Score=40.66  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+++|++||+|.++...+....        -+.+.||.++...+.-++++.
T Consensus        51 ~~vLDLfaGsG~lglea~srga--------~~v~~vE~~~~a~~~~~~N~~   93 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGA--------KVAFLEEDDRKANQTLKENLA   93 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCC--------CEEEEEeCCHHHHHHHHHHHH
Confidence            4899999999999988876421        258999999998887777664

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK03612 spermidine synthase; Provisional

Probab=87.34  E-value=0.81  Score=47.26  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      ..|-|+++.-.+.     ..+++-+|+++|+|+|.+++.++++    |..   -++++||++|.+.+.-++
T Consensus       281 ~~y~e~l~~~~l~-----~~~~~~rVL~IG~G~G~~~~~ll~~----~~v---~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        281 YRYHEALVHPAMA-----ASARPRRVLVLGGGDGLALREVLKY----PDV---EQVTLVDLDPAMTELART  339 (521)
T ss_pred             HHHHHHHHHHHHh-----hCCCCCeEEEEcCCccHHHHHHHhC----CCc---CeEEEEECCHHHHHHHHh
Confidence            4567766532111     1244568999999999999888753    221   379999999999998887

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=87.24  E-value=6.2  Score=38.54  Aligned_cols=85  Identities=16%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~  239 (310)
                      .+++|++|-||.|.   .||+.+.+.|..  ..++.++|.||...+.=++.+.+..                ....++|.
T Consensus       135 ~pvrIlDIAaG~GR---YvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~g----------------L~~i~~f~  193 (311)
T PF12147_consen  135 RPVRILDIAAGHGR---YVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERG----------------LEDIARFE  193 (311)
T ss_pred             CceEEEEeccCCcH---HHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcC----------------CccceEEE
Confidence            56899999999999   566666555543  2479999999999776665554311                11122332


Q ss_pred             -------cccccCCCCCCEEEEEeccccccccee
Q 021589          240 -------AALEQVPSGFPTIIVAHEFYDALPVHQ  266 (310)
Q Consensus       240 -------~sleelp~~~~~vIiANE~fDALPvh~  266 (310)
                             .++..+... |.++|.-=+++-||=..
T Consensus       194 ~~dAfd~~~l~~l~p~-P~l~iVsGL~ElF~Dn~  226 (311)
T PF12147_consen  194 QGDAFDRDSLAALDPA-PTLAIVSGLYELFPDND  226 (311)
T ss_pred             ecCCCCHhHhhccCCC-CCEEEEecchhhCCcHH
Confidence                   123333332 67777777788787644

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=87.07  E-value=1.6  Score=42.85  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=33.3

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++|++||+|+++..+.+..         -+++.||+|+...+..++++.
T Consensus       209 ~vLDl~~G~G~~sl~la~~~---------~~v~~vE~~~~ai~~a~~N~~  249 (362)
T PRK05031        209 DLLELYCGNGNFTLALARNF---------RRVLATEISKPSVAAAQYNIA  249 (362)
T ss_pred             eEEEEeccccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence            69999999999998655432         168999999999988877664

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=86.41  E-value=2.5  Score=40.74  Aligned_cols=66  Identities=9%  Similarity=0.023  Sum_probs=41.2

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       131 FiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      |+++..+.+-    +|+.++++.   +....-.|+|.|||+|+++.....    .     ..+++-+|+++.+.+.-+++
T Consensus       160 ~~~~~~l~~~----la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n  223 (329)
T TIGR01177       160 FFKPGSMDPK----LARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN  223 (329)
T ss_pred             ccCCCCCCHH----HHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence            4555445554    344443322   222234899999999998654321    1     13689999999988876666


Q ss_pred             cc
Q 021589          211 LK  212 (310)
Q Consensus       211 L~  212 (310)
                      +.
T Consensus       224 l~  225 (329)
T TIGR01177       224 LE  225 (329)
T ss_pred             HH
Confidence            64

This family is found exclusively in the Archaea.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=86.29  E-value=1.7  Score=42.06  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=28.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      -+|+|+|||+|.++..++..   .+     -.++-||+|+.+..
T Consensus       124 ~~VLDIGCG~G~~~~~la~~---g~-----~~V~GiD~S~~~l~  159 (322)
T PRK15068        124 RTVLDVGCGNGYHMWRMLGA---GA-----KLVVGIDPSQLFLC  159 (322)
T ss_pred             CEEEEeccCCcHHHHHHHHc---CC-----CEEEEEcCCHHHHH
Confidence            58999999999999877654   22     14889999998754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=86.08  E-value=3.1  Score=39.51  Aligned_cols=100  Identities=15%  Similarity=0.158  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND  221 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~  221 (310)
                      .++=.+-+..+.++++...--+|+|||||-|.++..+.+..        .++++-|..|+.-.+.-++++.....  .+ 
T Consensus        44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl--~~-  112 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIREAGL--ED-  112 (273)
T ss_dssp             HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCSTS--SS-
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHHhcCC--CC-
Confidence            34433444445556665545699999999999999887653        14789999999888776666653211  00 


Q ss_pred             cchhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccce
Q 021589          222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       222 ~~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh  265 (310)
                                 ...|.. .+..+++.. ---|+|-|.|-.++..
T Consensus       113 -----------~v~v~~-~D~~~~~~~-fD~IvSi~~~Ehvg~~  143 (273)
T PF02353_consen  113 -----------RVEVRL-QDYRDLPGK-FDRIVSIEMFEHVGRK  143 (273)
T ss_dssp             -----------TEEEEE-S-GGG---S--SEEEEESEGGGTCGG
T ss_pred             -----------ceEEEE-eeccccCCC-CCEEEEEechhhcChh
Confidence                       012222 122334433 2358888999998643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=85.12  E-value=2.5  Score=42.35  Aligned_cols=46  Identities=13%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-+|+|+|||+|.++..+++..   +.    .+++-+|+|+.+.+..++++..
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~---~~----~~v~a~D~s~~~l~~~~~n~~~  290 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELA---PQ----AQVVALDIDAQRLERVRENLQR  290 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHc---CC----CEEEEEeCCHHHHHHHHHHHHH
Confidence            3589999999999998887654   21    3799999999998877777653

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=85.00  E-value=3.8  Score=37.24  Aligned_cols=60  Identities=22%  Similarity=0.426  Sum_probs=37.7

Q ss_pred             CCChhHHHHHHHHHHHHH-----HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecC
Q 021589          134 SPEVSQMFGEMVGVWAMC-----LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS  200 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~~~-----~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S  200 (310)
                      .|+....|....+..-..     +......+..-+||++|+|.|.++..+++.   +|+    +++++.|.-
T Consensus        69 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp  133 (241)
T PF00891_consen   69 DPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPN----LRATVFDLP  133 (241)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STT----SEEEEEE-H
T ss_pred             ChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCC----CcceeeccH
Confidence            355666666665553211     122234444458999999999999999764   565    578999883

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=84.94  E-value=2.8  Score=38.95  Aligned_cols=47  Identities=11%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             HHHHHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          149 AMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       149 ~~~~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      +....+..+.. ....++++|||+|.|+.-+++.-        +-+++-||+|+.+
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~g--------a~~v~avD~~~~~  110 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKG--------AKEVYGVDVGYNQ  110 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcC--------CCEEEEEeCCHHH
Confidence            33444444432 34589999999999998777641        1368999999943

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=84.63  E-value=0.71  Score=43.80  Aligned_cols=76  Identities=16%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             CCCeecCCChh---HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcC-----ccccceEEEEec
Q 021589          128 EGDFITSPEVS---QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN-----FTESLHIHLVEC  199 (310)
Q Consensus       128 ~GDFiTSpeIs---~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~-----~~~~l~y~iVE~  199 (310)
                      -+|+|++++=+   ..+.-+++..+.+-|....+ ..+.|+|+|-|+|....-++..+..+..     ...++.|+-+|.
T Consensus        24 fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~-~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~  102 (252)
T COG4121          24 FDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQ-EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIEL  102 (252)
T ss_pred             hcccccccccchhhhHHHHHhccCcccccccccc-cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEe
Confidence            47888887631   33444555555555655543 3589999999999999888887754332     356789999998


Q ss_pred             ChhhH
Q 021589          200 SPTLQ  204 (310)
Q Consensus       200 SP~Lr  204 (310)
                      .|--+
T Consensus       103 ~P~~~  107 (252)
T COG4121         103 DPFSP  107 (252)
T ss_pred             CCCCh
Confidence            87543

>PLN02476 O-methyltransferase

Probab=83.96  E-value=3.5  Score=39.61  Aligned_cols=46  Identities=9%  Similarity=-0.016  Sum_probs=37.2

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|.|+|.-+..+...+..  +    -+++-+|.+|...+.-++.+..
T Consensus       120 k~VLEIGT~tGySal~lA~al~~--~----G~V~TiE~d~e~~~~Ar~n~~~  165 (278)
T PLN02476        120 ERCIEVGVYTGYSSLAVALVLPE--S----GCLVACERDSNSLEVAKRYYEL  165 (278)
T ss_pred             CeEEEecCCCCHHHHHHHHhCCC--C----CEEEEEECCHHHHHHHHHHHHH
Confidence            39999999999999988776522  1    2589999999999888887754

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=82.43  E-value=1.9  Score=40.74  Aligned_cols=71  Identities=14%  Similarity=0.167  Sum_probs=49.0

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      +.+|.|+.-|--+=.+|.++.+.-  ..+..+.+--|++||||+|--+. +|..    +.    ..++=||+||.|-+.-
T Consensus        20 A~kYt~nsri~~IQ~em~eRaLEL--Lalp~~~~~~iLDIGCGsGLSg~-vL~~----~G----h~wiGvDiSpsML~~a   88 (270)
T KOG1541|consen   20 APKYTQNSRIVLIQAEMAERALEL--LALPGPKSGLILDIGCGSGLSGS-VLSD----SG----HQWIGVDISPSMLEQA   88 (270)
T ss_pred             hhhccccceeeeehHHHHHHHHHH--hhCCCCCCcEEEEeccCCCcchh-eecc----CC----ceEEeecCCHHHHHHH
Confidence            467888888877778888776632  22333347789999999996554 3321    11    3588999999998755


Q ss_pred             HH
Q 021589          208 HH  209 (310)
Q Consensus       208 ~e  209 (310)
                      .+
T Consensus        89 ~~   90 (270)
T KOG1541|consen   89 VE   90 (270)
T ss_pred             HH
Confidence            53

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=81.40  E-value=12  Score=34.11  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=28.5

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      .+.+++++|||.|+.+.-+.+.         -..++-||.|+.-.+..+
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~---------G~~VtAvD~s~~al~~l~   69 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQ---------GFDVTAVDISPVALEKLQ   69 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHT---------T-EEEEEESSHHHHHHHH
T ss_pred             CCCcEEEcCCCCcHHHHHHHHC---------CCeEEEEECCHHHHHHHH
Confidence            4569999999999998876543         146999999996655433

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=81.01  E-value=3.2  Score=40.67  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=31.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...+|+|||||+|-   |+..+...-.     -.|+-||+|+.-.+.-++|.
T Consensus        62 ~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   62 PGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             TT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCCHHHHHHHHHHH
Confidence            45799999999998   8888865422     36999999998877666666

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=80.69  E-value=2.8  Score=40.09  Aligned_cols=106  Identities=18%  Similarity=0.304  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHhcCCcc---cHHHHHHHhhcCCCCcccCCC----CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHH
Q 021589           83 ESELVKHLKGIIKFRGGPI---SVAEYMEEVLTNPKAGFYINR----DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQ  155 (310)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpI---sf~dFM~~aLY~P~~GYY~~~----~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~  155 (310)
                      |++-.+.|.+-.+.. +.+   .+..+....|     ..++++    ..+|+++=|+=|.+-   |..++..-- ..|. 
T Consensus        22 D~ET~~FL~~S~e~S-~~~~~ql~~~l~~~~L-----~~f~S~T~iNG~LgRG~MFvfS~~Q---~~~LL~~~~-~~~~-   90 (265)
T PF05219_consen   22 DEETQEFLDRSYEKS-DWFFTQLWHSLASSIL-----SWFMSKTDINGILGRGSMFVFSEEQ---FRKLLRISG-FSWN-   90 (265)
T ss_pred             CHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHH-----HHHHhHHhHhhhhcCCcEEEecHHH---HHHHhhhhc-cCCC-
Confidence            556566666655543 321   2233333344     344432    246888889877542   222222110 0111 


Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                       ..-...++++||||.|.....+-..+   .      +++.-|+|+.||.+.++
T Consensus        91 -~~~~~~~lLDlGAGdG~VT~~l~~~f---~------~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   91 -PDWKDKSLLDLGAGDGEVTERLAPLF---K------EVYATEASPPMRWRLSK  134 (265)
T ss_pred             -CcccCCceEEecCCCcHHHHHHHhhc---c------eEEeecCCHHHHHHHHh
Confidence             10134589999999999887764332   2      37788999999987665

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=80.40  E-value=5.1  Score=36.51  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=33.6

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.++++|||+|+++-+....   .|    +.+.+-||.++...+.-+++..
T Consensus        36 ~~l~DIGaGtGsi~iE~a~~---~p----~~~v~AIe~~~~a~~~~~~N~~   79 (187)
T COG2242          36 DRLWDIGAGTGSITIEWALA---GP----SGRVIAIERDEEALELIERNAA   79 (187)
T ss_pred             CEEEEeCCCccHHHHHHHHh---CC----CceEEEEecCHHHHHHHHHHHH
Confidence            49999999999999998732   23    3589999999887775555443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=80.23  E-value=2.3  Score=40.25  Aligned_cols=78  Identities=17%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEec-
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA-  240 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~-  240 (310)
                      ++|+++|||-|.|+.-+-+.-         .+++-+|+|+.+.+.-+..-.+                  .+..+.|-. 
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~G---------a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~~  113 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLG---------ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQA  113 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCC---------CeeEEecCChHHHHHHHHhhhh------------------ccccccchhh
Confidence            699999999998888775532         3689999999988765543222                  122333321 


Q ss_pred             ccccCCC--CCCEEEEEeccccccccee
Q 021589          241 ALEQVPS--GFPTIIVAHEFYDALPVHQ  266 (310)
Q Consensus       241 sleelp~--~~~~vIiANE~fDALPvh~  266 (310)
                      ..+++..  +..-+|+++|++--.|--.
T Consensus       114 ~~edl~~~~~~FDvV~cmEVlEHv~dp~  141 (243)
T COG2227         114 TVEDLASAGGQFDVVTCMEVLEHVPDPE  141 (243)
T ss_pred             hHHHHHhcCCCccEEEEhhHHHccCCHH
Confidence            1233322  2346899999998777543

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=80.20  E-value=4.8  Score=38.78  Aligned_cols=57  Identities=23%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          136 EVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       136 eIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      +|=+.++.-||.-       .|   ..++||+|+|+-+=++-+|++++...   ..++|+-||+|...-.
T Consensus        64 aIl~~~a~Eia~~-------~g---~~~lveLGsGns~Ktr~Llda~~~~~---~~~ryvpiDv~a~iL~  120 (321)
T COG4301          64 AILQARAAEIASI-------TG---ACTLVELGSGNSTKTRILLDALAHRG---SLLRYVPIDVSASILR  120 (321)
T ss_pred             HHHHHHHHHHHHh-------hC---cceEEEecCCccHHHHHHHHHhhhcC---CcceeeeecccHHHHH
Confidence            3445555555543       34   36999999999999999999986532   1268999999987544

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=80.01  E-value=3.8  Score=38.22  Aligned_cols=73  Identities=25%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |+.-++-.--..|-|+|+...+..     .|.+-+|+-||.|.|.+++.++++    +..   .++.+||+.|...+..+
T Consensus        50 g~~q~~e~de~~y~e~l~h~~~~~-----~~~p~~VLiiGgG~G~~~~ell~~----~~~---~~i~~VEiD~~Vv~~a~  117 (246)
T PF01564_consen   50 GDVQLSERDEFIYHEMLVHPPLLL-----HPNPKRVLIIGGGDGGTARELLKH----PPV---ESITVVEIDPEVVELAR  117 (246)
T ss_dssp             TEEEEETTTHHHHHHHHHHHHHHH-----SSST-EEEEEESTTSHHHHHHTTS----TT----SEEEEEES-HHHHHHHH
T ss_pred             CeEEEEEechHHHHHHHhhhHhhc-----CCCcCceEEEcCCChhhhhhhhhc----CCc---ceEEEEecChHHHHHHH
Confidence            444444333356778777544322     345569999999999998888653    211   37999999999999988


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +.+..
T Consensus       118 ~~f~~  122 (246)
T PF01564_consen  118 KYFPE  122 (246)
T ss_dssp             HHTHH
T ss_pred             Hhchh
Confidence            87754

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
1zkd_A	387	X-ray Structure Of The Putative Protein Q6n1p6 From		1e-36
4f3n_A	432	High Resolution Native Crystal Structure Of An Unch		4e-10

>pdb|1ZKD|A Chain A, X-ray Structure Of The Putative Protein Q6n1p6 From Rhodopseudomonas Palustris At The Resolution 2.1 A , Northeast Structural Genomics Consortium Target Rpr58 Length = 387

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 114/209 (54%), Gaps = 21/209 (10%)
Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP  V  Y E  L +P+ G+Y+ RD  G EGDF TSPE+SQ FG
Sbjct: 4   QTALATEIKRLIK-AAGPXPVWRYXELCLGHPEHGYYVTRDPLGREGDFTTSPEISQXFG 62
Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT  AD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTXXADALRALRVLPILYQSLSVHLVEINPV 122
Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIRN-------------------IHWHDSFEDVPEG-PAVILANEYFDVL 162
Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSAASGL 291
           P+HQ  K   GW E++++I        G+
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGV 191

>pdb|4F3N|A Chain A, High Resolution Native Crystal Structure Of An Uncharacterized Acr, Cog1565 Superfamily Protein From Burkholderia Thailandensis, Solved By Iodide Ion Sad Length = 432

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 86  LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN-RDVFGAEGD----FITSPEVSQM 140
           L   L+  I   GG I  + YME VL  P  G+Y      FG   D    F+T+PE+S +
Sbjct: 61  LAASLRAEIASAGGWIPFSRYMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPL 120
Query: 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200
           F + +   A  + + +       ++E G G G L A LL   +      E     +V+ S
Sbjct: 121 FAQTL---ARPVAQALDASGTRRVMEFGAGTGKLAAGLL--TALAALGVELDEYAIVDLS 175
Query: 201 PTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             L+  Q   L       A                V W   L+ +P  F  ++V +E  D
Sbjct: 176 GELRARQRETLGAQAPGLA--------------ARVRW---LDALPERFEGVVVGNEVLD 218
Query: 261 ALPVHQFQKTTRGWCEKLVDIAEDSSA 287
           A+PV    K  RGWCE+ V I +D+ A
Sbjct: 219 AMPVRLVAKQARGWCERGVSI-DDAGA 244

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	8e-87
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	2e-74

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Length = 387

 Score =  264 bits (676), Expect = 8e-87
 Identities = 78/202 (38%), Positives = 117/202 (57%), Gaps = 21/202 (10%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 4   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 62

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 162

Query: 263 PVHQFQKTTRGWCEKLVDIAED 284
           P+HQ  K   GW E++++I   
Sbjct: 163 PIHQAIKRETGWHERVIEIGAS 184

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} Length = 432

 Score =  233 bits (597), Expect = 2e-74
 Identities = 58/244 (23%), Positives = 86/244 (35%), Gaps = 40/244 (16%)

Query: 59  ASTAISIDRSGLYNPPEHSHERKLES-------------ELVKHLKGIIKFRGGPISVAE 105
           +  +     + +YN   +    +  S              L   L+  I   GG I  + 
Sbjct: 21  SMVSQVSAGTVIYNAGMNPKAHEPASLPVPGPDALAQSEALAASLRAEIASAGGWIPFSR 80

Query: 106 YMEEVLTNPKAGFYINRDV-----FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           YME VL  P  G+Y               DF+T+PE+S +F + +        +  G   
Sbjct: 81  YMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPLFAQTLARPVAQALDASGTRR 140

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
              ++E G G G L A LL   +            +V+ S  L+  Q   L         
Sbjct: 141 ---VMEFGAGTGKLAAGLLTALAALGVE--LDEYAIVDLSGELRARQRETLGAQAPG--- 192

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
                          V W  AL   P  F  ++V +E  DA+PV    K  RGWCE+ V 
Sbjct: 193 -----------LAARVRWLDAL---PERFEGVVVGNEVLDAMPVRLVAKQARGWCERGVS 238

Query: 281 IAED 284
           I + 
Sbjct: 239 IDDA 242

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	100.0
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.98
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.18
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.16
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.15
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.14
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.0
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.98
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.95
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.93
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	96.93
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	96.92
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.91
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.89
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.89
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.88
3lcc_A	235	Putative methyl chloride transferase; halide methy	96.86
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	96.85
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.82
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.78
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.76
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.74
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.72
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	96.7
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.7
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	96.66
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	96.66
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	96.64
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	96.64
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.64
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	96.61
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	96.6
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	96.57
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.54
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.53
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.5
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	96.49
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.49
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.46
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.46
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	96.46
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.45
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	96.44
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.43
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.4
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.39
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	96.39
3i9f_A	170	Putative type 11 methyltransferase; structural gen	96.39
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	96.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.33
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.33
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.31
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	96.31
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	96.29
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.28
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	96.28
3ocj_A	305	Putative exported protein; structural genomics, PS	96.26
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.25
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.23
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.2
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.19
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.17
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	96.16
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.15
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.14
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	96.14
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.13
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	96.13
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	96.11
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.1
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	96.1
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.09
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	96.08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	96.07
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.06
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	96.06
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.04
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.01
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	95.95
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.94
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	95.93
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.93
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.9
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.85
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	95.81
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.8
3lkd_A	542	Type I restriction-modification system methyltrans	95.76
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.75
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	95.75
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	95.74
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	95.7
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.69
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.66
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.66
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	95.62
3khk_A	544	Type I restriction-modification system methylation	95.61
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.58
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.58
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	95.56
1ws6_A	171	Methyltransferase; structural genomics, riken stru	95.56
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.54
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	95.54
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.53
2b3t_A	276	Protein methyltransferase HEMK; translation termin	95.52
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.51
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	95.51
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	95.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.48
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	95.47
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	95.46
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.45
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	95.43
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.4
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.4
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	95.37
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	95.37
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	95.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.36
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	95.35
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.35
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	95.32
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.32
2esr_A	177	Methyltransferase; structural genomics, hypothetic	95.32
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.31
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	95.31
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.28
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	95.26
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	95.25
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	95.24
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	95.23
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	95.23
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	95.2
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	95.19
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.18
1xxl_A	239	YCGJ protein; structural genomics, protein structu	95.16
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	95.15
3cc8_A	230	Putative methyltransferase; structural genomics, j	95.15
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.15
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	95.11
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	95.1
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	95.1
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	95.08
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	95.07
2i7c_A	283	Spermidine synthase; transferase, structural genom	95.06
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.05
2o07_A	304	Spermidine synthase; structural genomics, structur	94.99
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	94.97
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.97
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	94.95
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.95
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	94.94
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.92
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.91
3ege_A	261	Putative methyltransferase from antibiotic biosyn	94.88
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	94.86
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	94.82
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	94.81
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	94.8
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.75
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	94.7
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	94.68
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	94.65
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	94.65
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	94.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	94.57
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	94.57
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	94.55
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	94.51
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	94.51
2pt6_A	321	Spermidine synthase; transferase, structural genom	94.51
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.47
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	94.44
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	94.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	94.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	94.36
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	94.35
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	94.34
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	94.24
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	94.21
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	94.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	94.13
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	94.04
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	94.0
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	93.92
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	93.92
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	93.9
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	93.85
2b25_A	336	Hypothetical protein; structural genomics, methyl	93.84
3lpm_A	259	Putative methyltransferase; structural genomics, p	93.8
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	93.72
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	93.68
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	93.64
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	93.61
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	93.58
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	93.45
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	93.44
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	93.37
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	93.28
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	93.26
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	93.23
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.17
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	93.08
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	93.08
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	92.89
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	92.69
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	92.64
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.46
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	92.43
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	92.37
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	92.35
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	92.33
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	92.21
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	92.12
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	92.04
3ufb_A	530	Type I restriction-modification system methyltran	92.04
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	92.03
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	91.96
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	91.93
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	91.87
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	91.85
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	91.76
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	91.64
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	91.44
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	91.43
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	91.36
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	91.14
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	90.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	90.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	90.52
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	90.25
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	90.22
2frn_A	278	Hypothetical protein PH0793; structural genomics,	90.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	90.02
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	89.99
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	89.94
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	89.58
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	89.47
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	89.08
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	88.81
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	88.71
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	88.59
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	88.53
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	88.44
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	88.16
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	88.08
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	86.65
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	85.93
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	85.69
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	85.21
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	85.05
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	84.47
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	84.46
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	84.16
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	83.63
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	83.33
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	83.04
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	82.66
2qm3_A	373	Predicted methyltransferase; putative methyltransf	82.46
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	81.76
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	81.37
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	80.86
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	80.6
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	80.59

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=100.00  E-value=8.2e-59  Score=453.44  Aligned_cols=192  Identities=41%  Similarity=0.834  Sum_probs=172.6

Q ss_pred             chHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCc
Q 021589           82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNR  161 (310)
Q Consensus        82 ~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~  161 (310)
                      +.++|.++|+++|+.. |||||++||++|||||++|||+++++||+.|||||||||||+|||+||+|++++|+.+|.|.+
T Consensus         3 ~~~~L~~~i~~~I~~~-G~i~f~~fM~~aLy~P~~GYY~~~~~~G~~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~   81 (387)
T 1zkd_A            3 DQTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT   81 (387)
T ss_dssp             CSSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             chHHHHHHHHHHHHhc-CCeeHHHHHHHHhcCCCCcccCCCCCCCCCCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            4468999999999986 899999999999999999999998899999999999999999999999999999999999999


Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s  241 (310)
                      ++|||+|||+|+||.|||++++..|+++.+++|+|||+||.|+++|+++|+..                  + +|.|+++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~------------------~-~v~W~~~  142 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI------------------R-NIHWHDS  142 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC------------------S-SEEEESS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC------------------C-CeEEeCC
Confidence            99999999999999999999998899999999999999999999999999741                  2 6999999


Q ss_pred             cccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeeecccc
Q 021589          242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQIK  294 (310)
Q Consensus       242 leelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~~~~~  294 (310)
                      ++++|.+ ++||||||||||||||+|++++++|+|++|+++++|.|.+.+...
T Consensus       143 l~~lp~~-~~~viANE~fDAlPv~~~~~~~~~w~E~~V~~~~~g~~~~~~~~~  194 (387)
T 1zkd_A          143 FEDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAAD  194 (387)
T ss_dssp             GGGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSS
T ss_pred             hhhcCCC-CeEEEeccccccCceEEEEecCCeEEEEEEEECCCCcEEEecCCC
Confidence            9999987 999999999999999999999999999999999888888887653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=100.00  E-value=1.5e-54  Score=428.15  Aligned_cols=189  Identities=30%  Similarity=0.490  Sum_probs=160.1

Q ss_pred             hHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCC-CCCC----CCCCeecCCChhHHHHHHHHHHHHHHHHHcC
Q 021589           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINR-DVFG----AEGDFITSPEVSQMFGEMVGVWAMCLWEQMG  157 (310)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~-~~~G----~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g  157 (310)
                      ++.|.++|+++|++.+|||||++||++|||||++|||+++ ++||    ++|||||||||||+|||+||+|+.++|+++|
T Consensus        58 s~~L~~~i~~~I~~~~GpI~fa~yM~~aLy~P~~GYY~~~~~~~G~~~~~~GDFiTAPeiS~~FGe~la~~~~~~~~~~g  137 (432)
T 4f3n_A           58 SEALAASLRAEIASAGGWIPFSRYMERVLYAPGMGYYSGGAQKFGRRADDGSDFVTAPELSPLFAQTLARPVAQALDASG  137 (432)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEHHHHHHHHHHSTTTSSSCC-------------CCSSCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCeeHHHHHHHHhcCCCCCcccCCCCCCCCCCCCCCCccCchhhhHHHHHHHHHHHHHHHHhcC
Confidence            5789999999998766999999999999999999999996 7899    9999999999999999999999999999998


Q ss_pred             CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeE
Q 021589          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVS  237 (310)
Q Consensus       158 ~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~  237 (310)
                         +++|||+|||+|+||.|||++++.+...  ..+|+|||+||.||++|+++|....+.              .+.+|.
T Consensus       138 ---~~~ivE~GaG~GtLa~DiL~~l~~~~~~--~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~--------------~~~~v~  198 (432)
T 4f3n_A          138 ---TRRVMEFGAGTGKLAAGLLTALAALGVE--LDEYAIVDLSGELRARQRETLGAQAPG--------------LAARVR  198 (432)
T ss_dssp             ---CCEEEEESCTTSHHHHHHHHHHHHTTCC--CSEEEEECTTSSSHHHHHHHHHHHSTT--------------TGGGEE
T ss_pred             ---CCeEEEeCCCccHHHHHHHHHHHhcCCC--CceEEEEEcCHHHHHHHHHHHhccccc--------------cCCCce
Confidence               4899999999999999999999764321  248999999999999999999753221              234799


Q ss_pred             EecccccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeeeccc
Q 021589          238 WHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQI  293 (310)
Q Consensus       238 W~~sleelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~~~~  293 (310)
                      |+++   +|.+.+|||||||||||||||+|++++++|+|++|+++++|+|.+....
T Consensus       199 W~~~---lP~~~~g~iiANE~fDAlPv~~~~~~~~~w~E~~V~~~~~~~~~~~~~p  251 (432)
T 4f3n_A          199 WLDA---LPERFEGVVVGNEVLDAMPVRLVAKQARGWCERGVSIDDAGAFVFADRP  251 (432)
T ss_dssp             EESS---CCSCEEEEEEEESCGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEEEC
T ss_pred             eccc---CCccCceEEEeehhhccCceeEEEEeCCcEEEEEEEEcCCCcEEeccCC
Confidence            9864   6766689999999999999999999999999999999888888776543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.98  E-value=4.2e-05  Score=69.79  Aligned_cols=117  Identities=19%  Similarity=0.260  Sum_probs=71.3

Q ss_pred             CCCCCeecCCChhHHHHHHHHHH----------HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEE
Q 021589          126 GAEGDFITSPEVSQMFGEMVGVW----------AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIH  195 (310)
Q Consensus       126 G~~GDFiTSpeIs~~FGe~Ia~~----------~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~  195 (310)
                      ++.+||.=--++..+|-.+|-+-          +..+.+..-.|. -+|+|+|||+|.++..+++.+.. +    ..+++
T Consensus        27 ~~~~~f~F~~~va~~fdd~i~rsvP~Y~~~~~~i~~l~~~~~~~~-~~vLDlGcGtG~~~~~la~~~~~-~----~~~v~  100 (261)
T 4gek_A           27 ARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPG-TQVYDLGCSLGAATLSVRRNIHH-D----NCKII  100 (261)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCTT-CEEEEETCTTTHHHHHHHHTCCS-S----SCEEE
T ss_pred             ccCCCceeCcchhhhhhhhHhhcCCCHHHHHHHHHHHHHHhCCCC-CEEEEEeCCCCHHHHHHHHhcCC-C----CCEEE
Confidence            45566644445666666665441          122223223333 59999999999999888765421 2    35899


Q ss_pred             EEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEec-ccccCCCCCCEEEEEecccccccc
Q 021589          196 LVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA-ALEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       196 iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~-sleelp~~~~~vIiANE~fDALPv  264 (310)
                      -||+||.+.+.-++++....                ...+|.+.. ++.++|....-+|+++..+--+|.
T Consensus       101 gvD~s~~ml~~A~~~~~~~~----------------~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~~~~~  154 (261)
T 4gek_A          101 AIDNSPAMIERCRRHIDAYK----------------APTPVDVIEGDIRDIAIENASMVVLNFTLQFLEP  154 (261)
T ss_dssp             EEESCHHHHHHHHHHHHTSC----------------CSSCEEEEESCTTTCCCCSEEEEEEESCGGGSCH
T ss_pred             EEECCHHHHHHHHHHHHhhc----------------cCceEEEeecccccccccccccceeeeeeeecCc
Confidence            99999999998888775421                123566643 345555443468889888877764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.18  E-value=0.0035  Score=56.12  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhh
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEER  226 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~  226 (310)
                      +.+..+.+.++.+...+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++.....          
T Consensus        51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~-----~~v~gvd~s~~~~~~a~~~~~~~~~----------  112 (287)
T 1kpg_A           51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY---D-----VNVVGLTLSKNQANHVQQLVANSEN----------  112 (287)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHTCCC----------
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc---C-----CEEEEEECCHHHHHHHHHHHHhcCC----------
Confidence            333344455555555699999999999999887543   2     2799999999999888877653110          


Q ss_pred             hhcccCCCCeEEe-cccccCCCCCCEEEEEeccccccc
Q 021589          227 TISSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALP  263 (310)
Q Consensus       227 ~~~~~~~~~v~W~-~sleelp~~~~~vIiANE~fDALP  263 (310)
                            ...+.+. .++.++|. ..-+|+++++|..+|
T Consensus       113 ------~~~~~~~~~d~~~~~~-~fD~v~~~~~l~~~~  143 (287)
T 1kpg_A          113 ------LRSKRVLLAGWEQFDE-PVDRIVSIGAFEHFG  143 (287)
T ss_dssp             ------CSCEEEEESCGGGCCC-CCSEEEEESCGGGTC
T ss_pred             ------CCCeEEEECChhhCCC-CeeEEEEeCchhhcC
Confidence                  1123332 23344553 245788888888885

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.16  E-value=0.0019  Score=59.71  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=46.5

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      -.|++.+.+-.-        +   .+..+.... +|+|+|||+|.|+..+++..         -+++.||+++.+.+.-+
T Consensus        27 QnfL~d~~i~~~--------I---v~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---------~~V~avEid~~~~~~l~   85 (271)
T 3fut_A           27 QNFLVSEAHLRR--------I---VEAARPFTG-PVFEVGPGLGALTRALLEAG---------AEVTAIEKDLRLRPVLE   85 (271)
T ss_dssp             CCEECCHHHHHH--------H---HHHHCCCCS-CEEEECCTTSHHHHHHHHTT---------CCEEEEESCGGGHHHHH
T ss_pred             ccccCCHHHHHH--------H---HHhcCCCCC-eEEEEeCchHHHHHHHHHcC---------CEEEEEECCHHHHHHHH
Confidence            458887765322        2   222344445 99999999999999887642         26999999999999888


Q ss_pred             Hhcc
Q 021589          209 HNLK  212 (310)
Q Consensus       209 e~L~  212 (310)
                      +++.
T Consensus        86 ~~~~   89 (271)
T 3fut_A           86 ETLS   89 (271)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            8775

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.15  E-value=0.0047  Score=54.61  Aligned_cols=93  Identities=12%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhh
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEER  226 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~  226 (310)
                      ..+..+.+.++.....+|+|+|||+|.++..+++..   .     .+++.||+|+.+.+.-++++.....          
T Consensus        48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~-----~~v~gvD~s~~~~~~a~~~~~~~~~----------  109 (273)
T 3bus_A           48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR---D-----VRVTGISISRPQVNQANARATAAGL----------  109 (273)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS---C-----CEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc---C-----CEEEEEeCCHHHHHHHHHHHHhcCC----------
Confidence            333344455565555799999999999998887642   1     4799999999998877776643110          


Q ss_pred             hhcccCCCCeEEe-cccccCC--CCCCEEEEEeccccccc
Q 021589          227 TISSLAGTPVSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       227 ~~~~~~~~~v~W~-~sleelp--~~~~~vIiANE~fDALP  263 (310)
                            ...+.+. .++.++|  .+..-+|++++.|..+|
T Consensus       110 ------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  143 (273)
T 3bus_A          110 ------ANRVTFSYADAMDLPFEDASFDAVWALESLHHMP  143 (273)
T ss_dssp             ------TTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSS
T ss_pred             ------CcceEEEECccccCCCCCCCccEEEEechhhhCC
Confidence                  1123332 1223333  22246889999888886

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.14  E-value=0.0042  Score=56.31  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCcc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~  222 (310)
                      +.-.+.+..+.+.++.....+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++.....      
T Consensus        55 ~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~-----~~v~gvD~s~~~~~~a~~~~~~~~~------  120 (302)
T 3hem_A           55 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY---D-----VNVIGLTLSENQYAHDKAMFDEVDS------  120 (302)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEECCHHHHHHHHHHHHHSCC------
T ss_pred             HHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhC---C-----CEEEEEECCHHHHHHHHHHHHhcCC------
Confidence            3334444445555665555699999999999999887654   2     3799999999999888777653110      


Q ss_pred             chhhhhcccCCCCeEEe-cccccCCCCCCEEEEEecccccccc
Q 021589          223 VEERTISSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       223 ~~~~~~~~~~~~~v~W~-~sleelp~~~~~vIiANE~fDALPv  264 (310)
                                ...+.+. .++.+++ +..-+|++++.|..+|-
T Consensus       121 ----------~~~v~~~~~d~~~~~-~~fD~v~~~~~~~~~~d  152 (302)
T 3hem_A          121 ----------PRRKEVRIQGWEEFD-EPVDRIVSLGAFEHFAD  152 (302)
T ss_dssp             ----------SSCEEEEECCGGGCC-CCCSEEEEESCGGGTTC
T ss_pred             ----------CCceEEEECCHHHcC-CCccEEEEcchHHhcCc
Confidence                      1123332 2233442 22458889999988853

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.00  E-value=0.0061  Score=54.59  Aligned_cols=99  Identities=12%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCC
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENN  218 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~  218 (310)
                      .+--..+...+.++...+..+ +.+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.....  
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~--  115 (285)
T 4htf_A           48 QLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER---------GHQVILCDLSAQMIDRAKQAAEAKGV--  115 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHC-CC--
T ss_pred             hHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHHhcCC--
Confidence            444444555555666666543 469999999999999887654         14799999999999887777653110  


Q ss_pred             cCccchhhhhcccCCCCeEEe-cccccCC---CCCCEEEEEeccccccc
Q 021589          219 ANDNVEERTISSLAGTPVSWH-AALEQVP---SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       219 ~~~~~~~~~~~~~~~~~v~W~-~sleelp---~~~~~vIiANE~fDALP  263 (310)
                                    ...+.+. .++.+++   .+..-+|+++.++..+|
T Consensus       116 --------------~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~  150 (285)
T 4htf_A          116 --------------SDNMQFIHCAAQDVASHLETPVDLILFHAVLEWVA  150 (285)
T ss_dssp             --------------GGGEEEEESCGGGTGGGCSSCEEEEEEESCGGGCS
T ss_pred             --------------CcceEEEEcCHHHhhhhcCCCceEEEECchhhccc
Confidence                          0123222 1222232   33346888888887776

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.98  E-value=0.0083  Score=53.91  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCe
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV  236 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v  236 (310)
                      +.+...+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++.....                ...+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~-----~~v~gvD~s~~~~~~a~~~~~~~~~----------------~~~~  134 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF---G-----VSIDCLNIAPVQNKRNEEYNNQAGL----------------ADNI  134 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHHHTC----------------TTTE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh---C-----CEEEEEeCCHHHHHHHHHHHHhcCC----------------Ccce
Confidence            44445699999999999999887754   1     3799999999998877776643110                1123


Q ss_pred             EEe-cccccCC--CCCCEEEEEeccccccc
Q 021589          237 SWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       237 ~W~-~sleelp--~~~~~vIiANE~fDALP  263 (310)
                      .+. .++.++|  .+..-+|+++..+..+|
T Consensus       135 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  164 (297)
T 2o57_A          135 TVKYGSFLEIPCEDNSYDFIWSQDAFLHSP  164 (297)
T ss_dssp             EEEECCTTSCSSCTTCEEEEEEESCGGGCS
T ss_pred             EEEEcCcccCCCCCCCEeEEEecchhhhcC
Confidence            332 1233333  23246788888877666

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.95  E-value=0.0072  Score=55.07  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=60.5

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhh
Q 021589          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERT  227 (310)
Q Consensus       148 ~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~  227 (310)
                      .+..+.+.++.....+|+|+|||+|.++..+++..   .     .+++.||+|+.+.+.-++++.....           
T Consensus        78 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~---~-----~~v~gvD~s~~~~~~a~~~~~~~~~-----------  138 (318)
T 2fk8_A           78 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF---D-----VNVIGLTLSKNQHARCEQVLASIDT-----------  138 (318)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHTSCC-----------
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC---C-----CEEEEEECCHHHHHHHHHHHHhcCC-----------
Confidence            33344445555555699999999999998887654   1     3799999999999888877653110           


Q ss_pred             hcccCCCCeEEe-cccccCCCCCCEEEEEecccccccc
Q 021589          228 ISSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       228 ~~~~~~~~v~W~-~sleelp~~~~~vIiANE~fDALPv  264 (310)
                           ...+.+. .++.+++.. .-+|+++++|..+|.
T Consensus       139 -----~~~v~~~~~d~~~~~~~-fD~v~~~~~l~~~~~  170 (318)
T 2fk8_A          139 -----NRSRQVLLQGWEDFAEP-VDRIVSIEAFEHFGH  170 (318)
T ss_dssp             -----SSCEEEEESCGGGCCCC-CSEEEEESCGGGTCG
T ss_pred             -----CCceEEEECChHHCCCC-cCEEEEeChHHhcCH
Confidence                 1123332 233445533 457888888888863

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.93  E-value=0.0032  Score=58.85  Aligned_cols=77  Identities=10%  Similarity=0.133  Sum_probs=54.4

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ..|.|+|+.++..+..+++.. +    .  ......+|+|+|||+|.++..+++.+.....  ...+++-+|++|.+.+.
T Consensus       104 ~~g~~~TP~~i~~~~~~ll~~-l----~--~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~--~~~~v~GiDi~~~~~~~  174 (344)
T 2f8l_A          104 QVNHQMTPDSIGFIVAYLLEK-V----I--QKKKNVSILDPACGTANLLTTVINQLELKGD--VDVHASGVDVDDLLISL  174 (344)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHH-H----H--TTCSEEEEEETTCTTSHHHHHHHHHHHTTSS--CEEEEEEEESCHHHHHH
T ss_pred             ccCcCCChHHHHHHHHHHHHH-h----c--CCCCCCEEEeCCCCccHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHH
Confidence            358899998877665555432 1    1  2224479999999999999999888743100  12579999999999887


Q ss_pred             HHHhcc
Q 021589          207 QHHNLK  212 (310)
Q Consensus       207 Q~e~L~  212 (310)
                      -+.++.
T Consensus       175 a~~n~~  180 (344)
T 2f8l_A          175 ALVGAD  180 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=96.93  E-value=0.005  Score=51.89  Aligned_cols=50  Identities=18%  Similarity=0.412  Sum_probs=38.8

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++.+.. +|+|+|||+|.++..+++.    +.    .+++.||+|+.+.+.-++++..
T Consensus        39 ~~~~~~~-~vLdiG~G~G~~~~~l~~~----~~----~~v~~~D~s~~~~~~a~~~~~~   88 (219)
T 3dlc_A           39 RFGITAG-TCIDIGSGPGALSIALAKQ----SD----FSIRALDFSKHMNEIALKNIAD   88 (219)
T ss_dssp             HHCCCEE-EEEEETCTTSHHHHHHHHH----SE----EEEEEEESCHHHHHHHHHHHHH
T ss_pred             hcCCCCC-EEEEECCCCCHHHHHHHHc----CC----CeEEEEECCHHHHHHHHHHHHh
Confidence            3444433 9999999999999888764    21    4799999999999888777653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=96.92  E-value=0.0069  Score=52.74  Aligned_cols=58  Identities=14%  Similarity=0.148  Sum_probs=43.7

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .|+..+.+.+......+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++.
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~  137 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--------YATTDLLEPVKHMLEEAKRELA  137 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH--------CSEEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh--------cCEEEEEeCCHHHHHHHHHHhc
Confidence            344444555554455799999999999999887654        1369999999999988887765

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.91  E-value=0.0038  Score=53.83  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=57.6

Q ss_pred             HHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhccc
Q 021589          152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSL  231 (310)
Q Consensus       152 ~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~  231 (310)
                      .+..++.+...+|+|+|||+|.++..+.+.  .       .+++-||+|+.+.+.-+++....... .+  .+  .....
T Consensus        14 ~~~~l~~~~~~~vLD~GCG~G~~~~~la~~--g-------~~V~gvD~S~~~l~~a~~~~~~~~~~-~~--~~--~~~~~   79 (203)
T 1pjz_A           14 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--G-------YHVVGAELSEAAVERYFTERGEQPHI-TS--QG--DFKVY   79 (203)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHHH--C-------CEEEEEEECHHHHHHHHHHHCSCSEE-EE--ET--TEEEE
T ss_pred             HHHhcccCCCCEEEEeCCCCcHhHHHHHHC--C-------CeEEEEeCCHHHHHHHHHHccCCccc-cc--cc--ccccc
Confidence            344455555569999999999999887653  1       36999999999988777664320000 00  00  00000


Q ss_pred             CCCCeEEe-cccccCCC---CCCEEEEEecccccccce
Q 021589          232 AGTPVSWH-AALEQVPS---GFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       232 ~~~~v~W~-~sleelp~---~~~~vIiANE~fDALPvh  265 (310)
                      ....+.|. .++.+++.   +..-+|+++.+|.++|..
T Consensus        80 ~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~  117 (203)
T 1pjz_A           80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPAD  117 (203)
T ss_dssp             ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHH
T ss_pred             cCCccEEEECccccCCcccCCCEEEEEECcchhhCCHH
Confidence            01234443 23344442   224578888888888753

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.89  E-value=0.0016  Score=59.04  Aligned_cols=73  Identities=14%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCC-CCcceEEEecCCchHHHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.+-+.+...+-.+...++. ....+|+|+|||+|.++..+|..+. .+|..  .+.|+.||+|+.|.+.-++++.
T Consensus        29 ~~~~~~~~~~~l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~--~v~~~~vD~S~~ml~~a~~~~~  103 (292)
T 2aot_A           29 HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGV--CINNEVVEPSAEQIAKYKELVA  103 (292)
T ss_dssp             HHHHHHHHHHTHHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTC--EEEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCc--eeeEEEEeCCHHHHHHHHHHHH
Confidence            444444444444444333442 3457999999999999999988764 34432  1356999999999988777764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.89  E-value=0.0034  Score=57.26  Aligned_cols=47  Identities=32%  Similarity=0.464  Sum_probs=37.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +....-+|+|+|||+|.++..+++..         .+++.||+++.+.+.-++++.
T Consensus        26 ~~~~~~~VLEIG~G~G~lt~~La~~~---------~~V~avEid~~~~~~~~~~~~   72 (255)
T 3tqs_A           26 HPQKTDTLVEIGPGRGALTDYLLTEC---------DNLALVEIDRDLVAFLQKKYN   72 (255)
T ss_dssp             CCCTTCEEEEECCTTTTTHHHHTTTS---------SEEEEEECCHHHHHHHHHHHT
T ss_pred             CCCCcCEEEEEcccccHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHHh
Confidence            33334589999999999999886531         379999999999998888775

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.88  E-value=0.0023  Score=60.66  Aligned_cols=68  Identities=13%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      --.|-++++..++.++.....|++.+|++||+|.|.++..+++.   +|.    .+++.||++|.+.+.-++.+.
T Consensus        67 e~~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~---~p~----~~v~~VEidp~vi~~Ar~~~~  134 (317)
T 3gjy_A           67 EFEYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADV---YPQ----SRNTVVELDAELARLSREWFD  134 (317)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHH---STT----CEEEEEESCHHHHHHHHHHSC
T ss_pred             hhHHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHH---CCC----cEEEEEECCHHHHHHHHHhcc
Confidence            34677888887765433334455679999999999999988875   343    479999999999999888875

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=96.86  E-value=0.0048  Score=53.57  Aligned_cols=85  Identities=11%  Similarity=0.061  Sum_probs=54.4

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccC
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (310)
                      +...+.+. .+|+|+|||+|.++..+.+     +    ..+++.||+|+.+.+.-++++.....                
T Consensus        60 ~~~~~~~~-~~vLDiGcG~G~~~~~l~~-----~----~~~v~gvD~s~~~~~~a~~~~~~~~~----------------  113 (235)
T 3lcc_A           60 VDTSSLPL-GRALVPGCGGGHDVVAMAS-----P----ERFVVGLDISESALAKANETYGSSPK----------------  113 (235)
T ss_dssp             HHTTCSCC-EEEEEETCTTCHHHHHHCB-----T----TEEEEEECSCHHHHHHHHHHHTTSGG----------------
T ss_pred             HHhcCCCC-CCEEEeCCCCCHHHHHHHh-----C----CCeEEEEECCHHHHHHHHHHhhccCC----------------
Confidence            34444444 4999999999999886632     1    24799999999999888877653110                


Q ss_pred             CCCeEEec-ccccCC-CCCCEEEEEeccccccc
Q 021589          233 GTPVSWHA-ALEQVP-SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       233 ~~~v~W~~-sleelp-~~~~~vIiANE~fDALP  263 (310)
                      ..++.+.. ++.+++ ....-+|+++.+|..+|
T Consensus       114 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  146 (235)
T 3lcc_A          114 AEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIE  146 (235)
T ss_dssp             GGGEEEECCCTTTCCCSSCEEEEEEESSTTTSC
T ss_pred             CcceEEEECchhcCCCCCCeeEEEEChhhhcCC
Confidence            01233321 122222 22246889999998887

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=96.85  E-value=0.008  Score=51.21  Aligned_cols=79  Identities=19%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCe
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPV  236 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v  236 (310)
                      ......+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++++...                   ..+
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~---------~~v~~vD~s~~~~~~a~~~~~~~-------------------~~~   99 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHC---------KRLTVIDVMPRAIGRACQRTKRW-------------------SHI   99 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGE---------EEEEEEESCHHHHHHHHHHTTTC-------------------SSE
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcC---------CEEEEEECCHHHHHHHHHhcccC-------------------CCe
Confidence            33345799999999999988775431         37999999999998888876531                   123


Q ss_pred             EEec-ccccCC-CCCCEEEEEeccccccc
Q 021589          237 SWHA-ALEQVP-SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       237 ~W~~-sleelp-~~~~~vIiANE~fDALP  263 (310)
                      .+.. ++.+++ .+..-+|+++.++.-+|
T Consensus       100 ~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A          100 SWAATDILQFSTAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             EEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred             EEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence            3321 223333 22236888888888777

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.82  E-value=0.0039  Score=58.24  Aligned_cols=63  Identities=19%  Similarity=0.316  Sum_probs=46.0

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       130 DFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|++.+.+-.        .++   +.++....-+|+|+|||+|.|+..+++..         -+++.||+++.+.+.-++
T Consensus        31 nfL~d~~i~~--------~Iv---~~l~~~~~~~VLEIG~G~G~lT~~La~~~---------~~V~aVEid~~li~~a~~   90 (295)
T 3gru_A           31 CFLIDKNFVN--------KAV---ESANLTKDDVVLEIGLGKGILTEELAKNA---------KKVYVIEIDKSLEPYANK   90 (295)
T ss_dssp             CEECCHHHHH--------HHH---HHTTCCTTCEEEEECCTTSHHHHHHHHHS---------SEEEEEESCGGGHHHHHH
T ss_pred             cccCCHHHHH--------HHH---HhcCCCCcCEEEEECCCchHHHHHHHhcC---------CEEEEEECCHHHHHHHHH
Confidence            5888866522        222   22333334589999999999999988751         369999999999998888


Q ss_pred             hcc
Q 021589          210 NLK  212 (310)
Q Consensus       210 ~L~  212 (310)
                      ++.
T Consensus        91 ~~~   93 (295)
T 3gru_A           91 LKE   93 (295)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            774

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.78  E-value=0.01  Score=50.31  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=45.3

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |.|.|++++....-+.        ....+....-+|+|+|||+|.++..+.+.    .    .-+++.||+|+.+.+.-+
T Consensus        26 ~~~~~~~~~~~~l~~~--------~~~~~~~~~~~vlD~g~G~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~   89 (207)
T 1wy7_A           26 EQYRTPGNAASELLWL--------AYSLGDIEGKVVADLGAGTGVLSYGALLL----G----AKEVICVEVDKEAVDVLI   89 (207)
T ss_dssp             TCCCCCHHHHHHHHHH--------HHHTTSSTTCEEEEETCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHH
T ss_pred             eeecCchHHHHHHHHH--------HHHcCCCCcCEEEEeeCCCCHHHHHHHHc----C----CCEEEEEECCHHHHHHHH
Confidence            3477876654432222        12223223458999999999998877543    1    126999999999998877


Q ss_pred             Hhcc
Q 021589          209 HNLK  212 (310)
Q Consensus       209 e~L~  212 (310)
                      +++.
T Consensus        90 ~~~~   93 (207)
T 1wy7_A           90 ENLG   93 (207)
T ss_dssp             HHTG
T ss_pred             HHHH
Confidence            7765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.76  E-value=0.0068  Score=55.67  Aligned_cols=52  Identities=10%  Similarity=0.024  Sum_probs=40.1

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...++.+...+|+|+|||+|.++..+.+..         .+++.||+|+.+.+.-++++..
T Consensus        38 l~~l~l~~g~~VLDlGcGtG~~a~~La~~g---------~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           38 IFLENIVPGSTVAVIGASTRFLIEKALERG---------ASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             HHTTTCCTTCEEEEECTTCHHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHTSS
T ss_pred             HHhcCCCCcCEEEEEeCcchHHHHHHHhcC---------CEEEEEECCHHHHHHHHHHHHh
Confidence            334455555699999999999998776531         3699999999999988887753

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.74  E-value=0.0018  Score=54.49  Aligned_cols=61  Identities=16%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+..++.+.....  ....+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++.
T Consensus        15 ~~~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~---~----~~~v~~vD~~~~~~~~a~~~~~   75 (215)
T 4dzr_A           15 EVLVEEAIRFLKRM--PSGTRVIDVGTGSGCIAVSIALAC---P----GVSVTAVDLSMDALAVARRNAE   75 (215)
T ss_dssp             HHHHHHHHHHHTTC--CTTEEEEEEESSBCHHHHHHHHHC---T----TEEEEEEECC------------
T ss_pred             HHHHHHHHHHhhhc--CCCCEEEEecCCHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHHH
Confidence            44555555444321  344699999999999999887753   2    2579999999998877666654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.72  E-value=0.01  Score=51.76  Aligned_cols=82  Identities=10%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCC
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT  234 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~  234 (310)
                      .++.....+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++...                   .
T Consensus        50 ~~~~~~~~~vLdiG~G~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~~~-------------------~  102 (266)
T 3ujc_A           50 DIELNENSKVLDIGSGLGGGCMYINEKY--------GAHTHGIDICSNIVNMANERVSGN-------------------N  102 (266)
T ss_dssp             TCCCCTTCEEEEETCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHTCCSC-------------------T
T ss_pred             hcCCCCCCEEEEECCCCCHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHhhcC-------------------C
Confidence            3444455699999999999999988764        147999999999998888776431                   1


Q ss_pred             CeEEe-cccccCC--CCCCEEEEEeccccccc
Q 021589          235 PVSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       235 ~v~W~-~sleelp--~~~~~vIiANE~fDALP  263 (310)
                      .+.+. .++.+++  .+..-+|+++.++..+|
T Consensus       103 ~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  134 (266)
T 3ujc_A          103 KIIFEANDILTKEFPENNFDLIYSRDAILALS  134 (266)
T ss_dssp             TEEEEECCTTTCCCCTTCEEEEEEESCGGGSC
T ss_pred             CeEEEECccccCCCCCCcEEEEeHHHHHHhcC
Confidence            23322 1222222  23346888988887774

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=96.70  E-value=0.016  Score=49.55  Aligned_cols=44  Identities=25%  Similarity=0.322  Sum_probs=35.9

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+.+.   .+    ..+++.||+|+.+.+.-++++.
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~---~~----~~~v~gvD~s~~~~~~a~~~~~   74 (217)
T 3jwh_A           31 RRVIDLGCGQGNLLKILLKD---SF----FEQITGVDVSYRSLEIAQERLD   74 (217)
T ss_dssp             CEEEEETCTTCHHHHHHHHC---TT----CSEEEEEESCHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCCHHHHHHHhh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            49999999999999887653   22    1479999999999998888765

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.70  E-value=0.0063  Score=51.92  Aligned_cols=43  Identities=26%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+..++++.
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   88 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA---------GRTVYGIEPSREMRMIAKEKLP   88 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT---------TCEEEEECSCHHHHHHHHHHSC
T ss_pred             CCeEEEeCCCCCHHHHHHHhC---------CCeEEEEeCCHHHHHHHHHhCC
Confidence            359999999999999887653         1479999999999988887764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.67  E-value=0.0087  Score=51.60  Aligned_cols=45  Identities=13%  Similarity=0.045  Sum_probs=35.5

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++.    .    ..+++.||+|+.+.+.-++++.
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~----~----~~~v~~vD~s~~~~~~a~~~~~   87 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEH----G----ASYVLGLDLSEKMLARARAAGP   87 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHHHTSC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHC----C----CCeEEEEcCCHHHHHHHHHhcc
Confidence            3469999999999998877653    1    0279999999999988877664

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=96.66  E-value=0.011  Score=50.97  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~  239 (310)
                      .+.+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++....                   .+.+.
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~---~----~~~v~~vD~s~~~~~~a~~~~~~~~-------------------~~~~~   97 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKY---P----EATFTLVDMSEKMLEIAKNRFRGNL-------------------KVKYI   97 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHC---T----TCEEEEEESCHHHHHHHHHHTCSCT-------------------TEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHhhccCC-------------------CEEEE
Confidence            45799999999999999887753   3    2479999999999988888765311                   23332


Q ss_pred             -cccccCCC-CCCEEEEEecccccccce
Q 021589          240 -AALEQVPS-GFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       240 -~sleelp~-~~~~vIiANE~fDALPvh  265 (310)
                       .++.+++. +..-+|+++.++.-+|-.
T Consensus        98 ~~d~~~~~~~~~fD~v~~~~~l~~~~~~  125 (234)
T 3dtn_A           98 EADYSKYDFEEKYDMVVSALSIHHLEDE  125 (234)
T ss_dssp             ESCTTTCCCCSCEEEEEEESCGGGSCHH
T ss_pred             eCchhccCCCCCceEEEEeCccccCCHH
Confidence             12233332 224678888888888743

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=96.66  E-value=0.016  Score=50.55  Aligned_cols=49  Identities=12%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.+...+|+|+|||+|.++..+++..   .     .+++.||+||.+.+.-++++.
T Consensus        32 ~~~~~~~~VLDiGcG~G~~~~~la~~~---~-----~~v~gvD~s~~~l~~a~~~~~   80 (256)
T 1nkv_A           32 LRMKPGTRILDLGSGSGEMLCTWARDH---G-----ITGTGIDMSSLFTAQAKRRAE   80 (256)
T ss_dssp             TCCCTTCEEEEETCTTCHHHHHHHHHT---C-----CEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHhc---C-----CeEEEEeCCHHHHHHHHHHHH
Confidence            344445699999999999999887653   1     368999999999888777664

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=96.64  E-value=0.013  Score=50.17  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=35.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+.+.   .|    ..+++-||+|+.+.+.-++++.
T Consensus        31 ~~vLDiGcG~G~~~~~l~~~---~~----~~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           31 KKVIDLGCGEGNLLSLLLKD---KS----FEQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             CEEEEETCTTCHHHHHHHTS---TT----CCEEEEEESCHHHHHHHHHHHT
T ss_pred             CEEEEecCCCCHHHHHHHhc---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            59999999999988877542   22    1479999999999998888765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=96.64  E-value=0.0035  Score=56.58  Aligned_cols=81  Identities=15%  Similarity=0.174  Sum_probs=53.1

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      ..+.+|+|+|||+|.++..+++.   +|.   ..+++.||+||.+.+.-++++....                  .++.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~---~~~v~gvD~s~~~~~~a~~~~~~~~------------------~~v~~   76 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPL---LPE---GSKYTGIDSGETLLAEARELFRLLP------------------YDSEF   76 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTT---SCT---TCEEEEEESCHHHHHHHHHHHHSSS------------------SEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---CCC---CCEEEEEECCHHHHHHHHHHHHhcC------------------CceEE
Confidence            34569999999999999887543   231   2579999999999988777764311                  12333


Q ss_pred             e-cccccCCC-CCCEEEEEeccccccc
Q 021589          239 H-AALEQVPS-GFPTIIVAHEFYDALP  263 (310)
Q Consensus       239 ~-~sleelp~-~~~~vIiANE~fDALP  263 (310)
                      . .++.+++. +..-+|+++.++..+|
T Consensus        77 ~~~d~~~~~~~~~fD~v~~~~~l~~~~  103 (284)
T 3gu3_A           77 LEGDATEIELNDKYDIAICHAFLLHMT  103 (284)
T ss_dssp             EESCTTTCCCSSCEEEEEEESCGGGCS
T ss_pred             EEcchhhcCcCCCeeEEEECChhhcCC
Confidence            2 12223332 2236788888887776

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.64  E-value=0.004  Score=55.75  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...+|+|+|||+|.++..+++     +.    .+++.||+||.+.+.-++++
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~-----~~----~~v~gvD~s~~~~~~a~~~~   99 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ-----SG----AEVLGTDNAATMIEKARQNY   99 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-----TT----CEEEEEESCHHHHHHHHHHC
T ss_pred             CCCEEEEecCCCCHHHHHHHh-----CC----CeEEEEECCHHHHHHHHhhC
Confidence            345999999999999998876     11    37999999999988777765

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=96.61  E-value=0.024  Score=50.05  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh------hHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT------LQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~------Lr~~Q~e~L~  212 (310)
                      .-+...-......+.+.++.....+|+|+|||+|.++..+++...  |    ..+++.||+|+.      +.+.-++++.
T Consensus        22 ~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g--~----~~~v~gvD~s~~~~~~~~~~~~a~~~~~   95 (275)
T 3bkx_A           22 RTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVG--S----SGHVTGIDIASPDYGAPLTLGQAWNHLL   95 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHC--T----TCEEEEECSSCTTCCSSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhC--C----CCEEEEEECCccccccHHHHHHHHHHHH
Confidence            344555555566666666665557999999999999998877641  2    137999999996      6665555554

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=96.60  E-value=0.012  Score=50.49  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          145 VGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       145 Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +..++.+.....+ +...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        23 ~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~---------~~~~~~~D~s~~~~~~a~~~~~   80 (246)
T 1y8c_A           23 WSDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPK---------FKNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGG---------SSEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCCeEEEeCCCCCHHHHHHHHC---------CCcEEEEECCHHHHHHHHHHHh
Confidence            3444444444332 23469999999999998876543         1379999999999888777664

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=96.57  E-value=0.017  Score=53.88  Aligned_cols=74  Identities=19%  Similarity=0.301  Sum_probs=52.9

Q ss_pred             eecCCC---hhHHHHHHHHHHH-----HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          131 FITSPE---VSQMFGEMVGVWA-----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       131 FiTSpe---Is~~FGe~Ia~~~-----~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      +...|+   ....|...++.+.     ..+.+..+.+...+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.
T Consensus       153 ~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~  224 (359)
T 1x19_A          153 QVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PG  224 (359)
T ss_dssp             SSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHH---CTT----CEEEEEEC-GG
T ss_pred             cccCchhhHHHHHHHHHHHHhccchhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHH---CCC----CeEEEEec-HH
Confidence            345577   7777777655432     23344455555679999999999999988775   343    58999999 99


Q ss_pred             hHHHHHHhcc
Q 021589          203 LQKLQHHNLK  212 (310)
Q Consensus       203 Lr~~Q~e~L~  212 (310)
                      +.+.-++++.
T Consensus       225 ~~~~a~~~~~  234 (359)
T 1x19_A          225 AIDLVNENAA  234 (359)
T ss_dssp             GHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8887777664

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.56  E-value=0.018  Score=49.61  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=37.5

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ....+|+|+|||+|.++..++...         .+++.||+|+.+.+.-++++..
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~---------~~v~~vD~~~~~~~~a~~~~~~  114 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV---------DKVVSVEINEKMYNYASKLLSY  114 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS---------SEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc---------CEEEEEeCCHHHHHHHHHHHhh
Confidence            334599999999999999877642         3799999999999988887653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.54  E-value=0.013  Score=51.06  Aligned_cols=51  Identities=16%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .+.++.....+|+|+|||+|.++..+++.+   |.    .+++.||+|+.+.+.-+++
T Consensus        26 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~----~~v~~~D~s~~~~~~a~~~   76 (259)
T 2p35_A           26 LAQVPLERVLNGYDLGCGPGNSTELLTDRY---GV----NVITGIDSDDDMLEKAADR   76 (259)
T ss_dssp             HTTCCCSCCSSEEEETCTTTHHHHHHHHHH---CT----TSEEEEESCHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEecCcCCHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHh
Confidence            334444445699999999999999887764   22    3799999999998877765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.53  E-value=0.015  Score=49.44  Aligned_cols=66  Identities=26%  Similarity=0.268  Sum_probs=46.7

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|.+++.|.+....           .+.++.....+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-
T Consensus        56 ~~~~~~~~~~~~~~-----------~~~l~~~~~~~vLdiG~G~G~~~~~la~~---------~~~v~~vD~~~~~~~~a  115 (210)
T 3lbf_A           56 QGQTISQPYMVARM-----------TELLELTPQSRVLEIGTGSGYQTAILAHL---------VQHVCSVERIKGLQWQA  115 (210)
T ss_dssp             TSCEECCHHHHHHH-----------HHHTTCCTTCEEEEECCTTSHHHHHHHHH---------SSEEEEEESCHHHHHHH
T ss_pred             CCCEeCCHHHHHHH-----------HHhcCCCCCCEEEEEcCCCCHHHHHHHHh---------CCEEEEEecCHHHHHHH
Confidence            36677776543322           11233334469999999999999887664         13799999999999988


Q ss_pred             HHhccc
Q 021589          208 HHNLKC  213 (310)
Q Consensus       208 ~e~L~~  213 (310)
                      ++++..
T Consensus       116 ~~~~~~  121 (210)
T 3lbf_A          116 RRRLKN  121 (210)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.50  E-value=0.0048  Score=55.27  Aligned_cols=47  Identities=21%  Similarity=0.372  Sum_probs=38.2

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +....-+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++++.
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~~---------~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQRC---------NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHS---------SEEEEECSCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHcC---------CeEEEEECCHHHHHHHHHhhc
Confidence            43334589999999999999887652         369999999999998888775

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=96.49  E-value=0.014  Score=49.74  Aligned_cols=51  Identities=10%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++...  |    ..+++.||+|+.+.+.-++++.
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~----~~~v~~vD~s~~~~~~a~~~~~   83 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVG--E----KGKVYAIDVQEEMVNYAWEKVN   83 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHT--T----TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhC--C----CcEEEEEECCHHHHHHHHHHHH
Confidence            3444456999999999999999887641  1    1379999999999888777764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.49  E-value=0.013  Score=49.87  Aligned_cols=83  Identities=12%  Similarity=0.241  Sum_probs=53.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~-  239 (310)
                      ..+|+|+|||+|.++..++..         ..+++.||+|+.+.+.-++++.......            .....+.+. 
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~   89 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK---------GYSVTGIDINSEAIRLAETAARSPGLNQ------------KTGGKAEFKV   89 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHTTCCSCCS------------SSSCEEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhC---------CCeEEEEECCHHHHHHHHHHHHhcCCcc------------ccCcceEEEE
Confidence            359999999999999887654         1379999999999988887765421100            001123332 


Q ss_pred             cccccCC--CCCCEEEEEecccccccc
Q 021589          240 AALEQVP--SGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       240 ~sleelp--~~~~~vIiANE~fDALPv  264 (310)
                      .++.+++  .+..-+|+++.++..+|-
T Consensus        90 ~d~~~~~~~~~~~D~v~~~~~l~~~~~  116 (235)
T 3sm3_A           90 ENASSLSFHDSSFDFAVMQAFLTSVPD  116 (235)
T ss_dssp             CCTTSCCSCTTCEEEEEEESCGGGCCC
T ss_pred             ecccccCCCCCceeEEEEcchhhcCCC
Confidence            1223332  232468888888888863

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.46  E-value=0.012  Score=51.71  Aligned_cols=44  Identities=9%  Similarity=0.216  Sum_probs=35.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+.+..   +      +++.||+|+.+.+.-++++.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~---~------~v~gvD~s~~~l~~a~~~~~   80 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV---K------KVVAFDLTEDILKVARAFIE   80 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS---S------EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC---C------EEEEEeCCHHHHHHHHHHHH
Confidence            44699999999999988775431   1      79999999999988777664

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.014  Score=52.70  Aligned_cols=48  Identities=23%  Similarity=0.162  Sum_probs=38.1

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+|+|||+|.++..+++.+.  +    ..+++.||+||.+.+.-++++..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~--~----~~~v~gvD~s~~~~~~a~~~~~~   83 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELK--P----FEQIIGSDLSATMIKTAEVIKEG   83 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSS--C----CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCC--C----CCEEEEEeCCHHHHHHHHHHHHh
Confidence            446999999999999999886541  1    24799999999998877776643

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=96.46  E-value=0.0057  Score=56.55  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       124 ~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      .+|  -.|++.+.+-.        .+++   .++....-+|+|+|||+|.|+..+++.....     ..+++.||+++.+
T Consensus        19 ~~G--Q~fL~d~~i~~--------~iv~---~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~-----~~~V~avDid~~~   80 (279)
T 3uzu_A           19 RFG--QNFLVDHGVID--------AIVA---AIRPERGERMVEIGPGLGALTGPVIARLATP-----GSPLHAVELDRDL   80 (279)
T ss_dssp             CCS--CCEECCHHHHH--------HHHH---HHCCCTTCEEEEECCTTSTTHHHHHHHHCBT-----TBCEEEEECCHHH
T ss_pred             cCC--ccccCCHHHHH--------HHHH---hcCCCCcCEEEEEccccHHHHHHHHHhCCCc-----CCeEEEEECCHHH
Confidence            355  36888876532        2222   2233334589999999999999998764210     1349999999999


Q ss_pred             HHHHHHh
Q 021589          204 QKLQHHN  210 (310)
Q Consensus       204 r~~Q~e~  210 (310)
                      .+.-+++
T Consensus        81 l~~a~~~   87 (279)
T 3uzu_A           81 IGRLEQR   87 (279)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887776

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.45  E-value=0.022  Score=49.77  Aligned_cols=49  Identities=12%  Similarity=0.092  Sum_probs=37.8

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++..   +     -+++.||+|+.+.+.-++++.
T Consensus        40 ~~~~~~~~vLD~GcG~G~~~~~l~~~~---~-----~~v~~vD~s~~~~~~a~~~~~   88 (253)
T 3g5l_A           40 LPDFNQKTVLDLGCGFGWHCIYAAEHG---A-----KKVLGIDLSERMLTEAKRKTT   88 (253)
T ss_dssp             CCCCTTCEEEEETCTTCHHHHHHHHTT---C-----SEEEEEESCHHHHHHHHHHCC
T ss_pred             hhccCCCEEEEECCCCCHHHHHHHHcC---C-----CEEEEEECCHHHHHHHHHhhc
Confidence            343345799999999999988876541   1     179999999999988877764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.44  E-value=0.0083  Score=52.36  Aligned_cols=57  Identities=9%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++.+.......+...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~~   84 (252)
T 1wzn_A           28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---------GYEVVGLDLHEEMLRVARRKAK   84 (252)
T ss_dssp             HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            44555555555444569999999999999877653         1379999999999887776653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.43  E-value=0.016  Score=49.32  Aligned_cols=47  Identities=19%  Similarity=0.233  Sum_probs=37.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++...  |    ..+++.||+|+.+.+.-++++.
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~vD~~~~~~~~a~~~~~  123 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVG--E----DGLVVSIERIPELAEKAERTLR  123 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            345999999999999998887651  1    1379999999999988877764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.40  E-value=0.0093  Score=50.17  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=35.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..++..    +    ..+++-||+|+.+.+.-++++.
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~----~----~~~v~~vD~~~~~~~~a~~~~~   88 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSR----G----AASVLFVESDQRSAAVIARNIE   88 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT----T----CSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHC----C----CCeEEEEECCHHHHHHHHHHHH
Confidence            358999999999999876652    1    1379999999999887777664

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.39  E-value=0.023  Score=51.88  Aligned_cols=87  Identities=20%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             HcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCC
Q 021589          155 QMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAG  233 (310)
Q Consensus       155 ~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~  233 (310)
                      .++ .....+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++.....                .
T Consensus       111 ~l~~~~~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~  166 (312)
T 3vc1_A          111 HLGQAGPDDTLVDAGCGRGGSMVMAHRRF--------GSRVEGVTLSAAQADFGNRRARELRI----------------D  166 (312)
T ss_dssp             TSCCCCTTCEEEEESCTTSHHHHHHHHHH--------CCEEEEEESCHHHHHHHHHHHHHTTC----------------T
T ss_pred             HhccCCCCCEEEEecCCCCHHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHHHcCC----------------C
Confidence            344 3345699999999999999887653        13799999999998887776653110                1


Q ss_pred             CCeEEe-cccccCC--CCCCEEEEEecccccccce
Q 021589          234 TPVSWH-AALEQVP--SGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       234 ~~v~W~-~sleelp--~~~~~vIiANE~fDALPvh  265 (310)
                      ..+.+. .++.+++  .+..-+|++++++..++..
T Consensus       167 ~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~  201 (312)
T 3vc1_A          167 DHVRSRVCNMLDTPFDKGAVTASWNNESTMYVDLH  201 (312)
T ss_dssp             TTEEEEECCTTSCCCCTTCEEEEEEESCGGGSCHH
T ss_pred             CceEEEECChhcCCCCCCCEeEEEECCchhhCCHH
Confidence            123332 2233333  2334688899888877643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=96.39  E-value=0.019  Score=47.78  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=35.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   75 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN---------GYDVDAWDKNAMSIANVERIKS   75 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            459999999999998877653         1379999999999888777664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=96.39  E-value=0.0057  Score=50.17  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       158 ~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .....+|+|+|||+|.++..+.+..        . +++.||+|+.+.+.-+++
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~--------~-~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFA--------T-KLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTE--------E-EEEEECSCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhc--------C-eEEEEeCCHHHHHHHHHh
Confidence            3344699999999999988776532        1 799999999998877766

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=96.38  E-value=0.028  Score=47.59  Aligned_cols=53  Identities=17%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ....+..+.+.. ...+|+|+|||+|.++..+     ..      .+++.||+|+.+.+.-++++
T Consensus        24 ~~~~~~l~~~~~-~~~~vLdiG~G~G~~~~~l-----~~------~~v~~vD~s~~~~~~a~~~~   76 (211)
T 2gs9_A           24 AEEERALKGLLP-PGESLLEVGAGTGYWLRRL-----PY------PQKVGVEPSEAMLAVGRRRA   76 (211)
T ss_dssp             HHHHHHHHTTCC-CCSEEEEETCTTCHHHHHC-----CC------SEEEEECCCHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC-CCCeEEEECCCCCHhHHhC-----CC------CeEEEEeCCHHHHHHHHHhC
Confidence            334444444443 4469999999999988765     11      27999999999988777765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.33  E-value=0.016  Score=49.94  Aligned_cols=42  Identities=17%  Similarity=0.157  Sum_probs=34.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+..+++.
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   95 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRT---------GYKAVGVDISEVMIQKGKERG   95 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHTTT
T ss_pred             CCeEEEEcCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHhhc
Confidence            359999999999999887653         137999999999998877764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.33  E-value=0.011  Score=50.56  Aligned_cols=55  Identities=25%  Similarity=0.297  Sum_probs=38.6

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++.+......  ...+|+|+|||+|.++..+.+.   .+      +++.||+|+.+.+.-++++.
T Consensus        31 ~~~~~~l~~~~--~~~~vLDiGcG~G~~~~~l~~~---~~------~v~gvD~s~~~~~~a~~~~~   85 (250)
T 2p7i_A           31 PFMVRAFTPFF--RPGNLLELGSFKGDFTSRLQEH---FN------DITCVEASEEAISHAQGRLK   85 (250)
T ss_dssp             HHHHHHHGGGC--CSSCEEEESCTTSHHHHHHTTT---CS------CEEEEESCHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhc--CCCcEEEECCCCCHHHHHHHHh---CC------cEEEEeCCHHHHHHHHHhhh
Confidence            34444443332  2348999999999998877542   22      58999999999888777664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.31  E-value=0.015  Score=49.94  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=36.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++..   +      +++.||+|+.+.+.-++++.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~---~------~v~~~D~s~~~~~~a~~~~~   83 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEF---G------DTAGLELSEDMLTHARKRLP   83 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHH---S------EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEecccCCHHHHHHHHhC---C------cEEEEeCCHHHHHHHHHhCC
Confidence            34699999999999998887653   1      68999999999988777653

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=96.31  E-value=0.023  Score=49.44  Aligned_cols=43  Identities=14%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   81 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIAR---------GYRYIALDADAAMLEVFRQKI   81 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTT---------TCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEeCCcCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHh
Confidence            4469999999999999887643         137999999999998887776

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=96.29  E-value=0.027  Score=47.47  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEec
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA  240 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~  240 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++  ...                   ..+.+..
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~--~~~-------------------~~~~~~~   96 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL---------ADRVTALDGSAEMIAEAGR--HGL-------------------DNVEFRQ   96 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH---------SSEEEEEESCHHHHHHHGG--GCC-------------------TTEEEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhc---------CCeEEEEeCCHHHHHHHHh--cCC-------------------CCeEEEe
Confidence            359999999999999888765         1379999999998876655  110                   1222221


Q ss_pred             -ccccC-CCCCCEEEEEecccccccc
Q 021589          241 -ALEQV-PSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       241 -sleel-p~~~~~vIiANE~fDALPv  264 (310)
                       ++.++ +.+..-+|+++.++..+|-
T Consensus        97 ~d~~~~~~~~~~D~v~~~~~l~~~~~  122 (218)
T 3ou2_A           97 QDLFDWTPDRQWDAVFFAHWLAHVPD  122 (218)
T ss_dssp             CCTTSCCCSSCEEEEEEESCGGGSCH
T ss_pred             cccccCCCCCceeEEEEechhhcCCH
Confidence             12222 2232468888888888885

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=96.28  E-value=0.027  Score=53.07  Aligned_cols=71  Identities=25%  Similarity=0.417  Sum_probs=48.7

Q ss_pred             CCChhHHHHHHHHHHH----HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          134 SPEVSQMFGEMVGVWA----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~----~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|+....|....+.+.    ..+.+..+.+...+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+.-++
T Consensus       172 ~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~~  243 (369)
T 3gwz_A          172 DPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDA---FPG----LRGTLLER-PPVAEEARE  243 (369)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHH---CCC----CeEEEEcC-HHHHHHHHH
Confidence            3555666655554432    22334445455679999999999999988775   343    57999999 888777776


Q ss_pred             hcc
Q 021589          210 NLK  212 (310)
Q Consensus       210 ~L~  212 (310)
                      ++.
T Consensus       244 ~~~  246 (369)
T 3gwz_A          244 LLT  246 (369)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            664

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=96.28  E-value=0.0081  Score=52.14  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=56.5

Q ss_pred             hhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCcc
Q 021589          110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT  189 (310)
Q Consensus       110 aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~  189 (310)
                      ..|.|..-|+.....+|. |.+++.|.+....-+.++.         ......+|+|+|||+|.++..+.+..... ...
T Consensus        44 ~~f~~~~~y~d~~~~~~~-~~~~~~p~~~~~~~~~l~~---------~~~~~~~VLdiG~G~G~~~~~la~~~~~~-~~~  112 (227)
T 1r18_A           44 KHYSPRNPYMDAPQPIGG-GVTISAPHMHAFALEYLRD---------HLKPGARILDVGSGSGYLTACFYRYIKAK-GVD  112 (227)
T ss_dssp             GGTCSSCTTBSSCEEEET-TEEECCHHHHHHHHHHTTT---------TCCTTCEEEEESCTTSHHHHHHHHHHHHS-CCC
T ss_pred             HHcCCcccccCCCcccCC-CCccCChHHHHHHHHHHHh---------hCCCCCEEEEECCCccHHHHHHHHhcccc-cCC
Confidence            356666656555444553 4566666654332222110         12223599999999999999888765310 000


Q ss_pred             ccceEEEEecChhhHHHHHHhcc
Q 021589          190 ESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       190 ~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+++.||+|+.+.+.-++++.
T Consensus       113 ~~~~v~~vD~~~~~~~~a~~~~~  135 (227)
T 1r18_A          113 ADTRIVGIEHQAELVRRSKANLN  135 (227)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCEEEEEEcCHHHHHHHHHHHH
Confidence            11379999999999988777764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=96.26  E-value=0.017  Score=52.53  Aligned_cols=82  Identities=6%  Similarity=-0.024  Sum_probs=52.3

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~  239 (310)
                      ...+|+|+|||+|.++..+...  ..|    ..+++.||+|+.+.+.-++++.....                ..++.+.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~--~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~~~v~~~  175 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYS--ACP----GVQLVGIDYDPEALDGATRLAAGHAL----------------AGQITLH  175 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCT--TCT----TCEEEEEESCHHHHHHHHHHHTTSTT----------------GGGEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHh--cCC----CCeEEEEECCHHHHHHHHHHHHhcCC----------------CCceEEE
Confidence            3468999999999988765311  222    35899999999999988887753211                1123332


Q ss_pred             -cccccCCC-CCCEEEEEeccccccc
Q 021589          240 -AALEQVPS-GFPTIIVAHEFYDALP  263 (310)
Q Consensus       240 -~sleelp~-~~~~vIiANE~fDALP  263 (310)
                       .++.+++. +..-+|+++.++.-+|
T Consensus       176 ~~d~~~~~~~~~fD~v~~~~~~~~~~  201 (305)
T 3ocj_A          176 RQDAWKLDTREGYDLLTSNGLNIYEP  201 (305)
T ss_dssp             ECCGGGCCCCSCEEEEECCSSGGGCC
T ss_pred             ECchhcCCccCCeEEEEECChhhhcC
Confidence             22333332 2246888888887765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.25  E-value=0.026  Score=49.21  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      +...+|+|+|||+|.++..+.+..   +     .+++.||+|+.+.+.-++++.....                ...+.+
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~---~-----~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~~~~~  100 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYV---K-----GQITGIDLFPDFIEIFNENAVKANC----------------ADRVKG  100 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHC---C-----SEEEEEESCHHHHHHHHHHHHHTTC----------------TTTEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhC---C-----CeEEEEECCHHHHHHHHHHHHHcCC----------------CCceEE
Confidence            334599999999999999887653   2     2799999999999887776643110                112333


Q ss_pred             e-cccccCC--CCCCEEEEEecccccccc
Q 021589          239 H-AALEQVP--SGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       239 ~-~sleelp--~~~~~vIiANE~fDALPv  264 (310)
                      . .++.+++  .+..-+|+++..+..++.
T Consensus       101 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  129 (257)
T 3f4k_A          101 ITGSMDNLPFQNEELDLIWSEGAIYNIGF  129 (257)
T ss_dssp             EECCTTSCSSCTTCEEEEEEESCSCCCCH
T ss_pred             EECChhhCCCCCCCEEEEEecChHhhcCH
Confidence            2 2233333  222468888888877643

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.23  E-value=0.0083  Score=49.21  Aligned_cols=51  Identities=18%  Similarity=0.205  Sum_probs=38.5

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +......+|+|+|||+|.++..+++..   |    ..+++.||+|+.+.+.-++++..
T Consensus        21 ~~~~~~~~vldiG~G~G~~~~~l~~~~---~----~~~v~~vD~~~~~~~~a~~~~~~   71 (178)
T 3hm2_A           21 LAPKPHETLWDIGGGSGSIAIEWLRST---P----QTTAVCFEISEERRERILSNAIN   71 (178)
T ss_dssp             HCCCTTEEEEEESTTTTHHHHHHHTTS---S----SEEEEEECSCHHHHHHHHHHHHT
T ss_pred             hcccCCCeEEEeCCCCCHHHHHHHHHC---C----CCeEEEEeCCHHHHHHHHHHHHH
Confidence            344444699999999999988876542   2    25799999999998877776543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.20  E-value=0.013  Score=47.81  Aligned_cols=44  Identities=14%  Similarity=0.309  Sum_probs=35.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++     +    ..+++.||+|+.+.+.-++++.
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~-----~----~~~v~~vD~~~~~~~~a~~~~~   78 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK-----R----CKFVYAIDYLDGAIEVTKQNLA   78 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT-----T----SSEEEEEECSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHh-----c----CCeEEEEeCCHHHHHHHHHHHH
Confidence            345999999999999888765     1    2479999999999988777764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.19  E-value=0.03  Score=48.14  Aligned_cols=46  Identities=11%  Similarity=0.123  Sum_probs=37.2

Q ss_pred             CcceEEEecCC-chHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPG-RGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG-~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+|+||| +|.++..+.+..        ..+++.||+|+.+.+.-++++..
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~--------~~~v~~vD~s~~~~~~a~~~~~~  101 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF--------NCKVTATEVDEEFFEYARRNIER  101 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH--------CCEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHHHH
Confidence            34699999999 999999887654        14799999999998887776643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.17  E-value=0.026  Score=47.88  Aligned_cols=42  Identities=24%  Similarity=0.406  Sum_probs=34.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~   85 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA---------GFDVDATDGSPELAAEASRRL   85 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHHHc---------CCeEEEECCCHHHHHHHHHhc
Confidence            459999999999998877653         137999999999988777765

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=96.16  E-value=0.032  Score=49.12  Aligned_cols=44  Identities=16%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++.   .      .+++.||+|+.+.+.-++++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~------~~v~gvD~s~~~~~~a~~~~~   93 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---F------GTVEGLELSADMLAIARRRNP   93 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---S------SEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---C------CeEEEEECCHHHHHHHHhhCC
Confidence            3469999999999998877543   1      269999999999888777654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.15  E-value=0.014  Score=49.37  Aligned_cols=45  Identities=13%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..-+|+|+|||+|.++..+.+.    +    ..+++-||+||.+.+.-++++.
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~~~~~   95 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL----G----AESVTAFDIDPDAIETAKRNCG   95 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT----T----BSEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCEEEEEeCCccHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHhcC
Confidence            3459999999999998876543    1    1369999999999988777653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.14  E-value=0.032  Score=47.22  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+    .+    ..+++.||+|+.+.+.-++++.
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~----~~----~~~v~~vD~s~~~~~~a~~~~~  104 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHK----LG----AKSVLATDISDESMTAAEENAA  104 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHH----TT----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHH----CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            35999999999999887543    22    2479999999999887777664

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=96.14  E-value=0.0065  Score=55.23  Aligned_cols=43  Identities=21%  Similarity=0.267  Sum_probs=33.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|.++.  |..   .+    ..+++.||+++.|.+.-++++.
T Consensus        22 ~~~VLEIG~G~G~lt~--l~~---~~----~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE--PVG---ER----LDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             TCCEEEECCTTTTTHH--HHH---TT----CSCEEEECCCHHHHHHHHTCTT
T ss_pred             cCEEEEECCCCcHHHH--hhh---CC----CCeEEEEECCHHHHHHHHHHhc
Confidence            3589999999999999  432   11    1248999999999998888764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.13  E-value=0.005  Score=54.50  Aligned_cols=45  Identities=11%  Similarity=0.086  Sum_probs=35.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-+|+|+|||.|.++..|.+.   .|     -+++.||+||.+.+.-+++...
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~---~~-----~~v~~id~~~~~~~~a~~~~~~  105 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEA---PI-----DEHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTS---CE-----EEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCeEEEECCCccHHHHHHHHh---CC-----cEEEEEeCCHHHHHHHHHHHhh
Confidence            369999999999988776432   23     2689999999999887776643

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=96.13  E-value=0.017  Score=51.71  Aligned_cols=77  Identities=12%  Similarity=0.044  Sum_probs=50.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~-  239 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++...                  +.++.+. 
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~---------g~~v~~vD~s~~~~~~a~~~~~~~------------------~~~~~~~~  173 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL---------GYDVTSWDHNENSIAFLNETKEKE------------------NLNISTAL  173 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHHT------------------TCCEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHHHHc------------------CCceEEEE
Confidence            359999999999998877653         137999999999988777766431                  1123332 


Q ss_pred             cccccCC-CCCCEEEEEecccccccc
Q 021589          240 AALEQVP-SGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       240 ~sleelp-~~~~~vIiANE~fDALPv  264 (310)
                      .++.+++ .+..-+|+++.+|..++.
T Consensus       174 ~d~~~~~~~~~fD~i~~~~~~~~~~~  199 (286)
T 3m70_A          174 YDINAANIQENYDFIVSTVVFMFLNR  199 (286)
T ss_dssp             CCGGGCCCCSCEEEEEECSSGGGSCG
T ss_pred             eccccccccCCccEEEEccchhhCCH
Confidence            1222322 222467888888876654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=96.11  E-value=0.014  Score=50.80  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+++..        ..+++.||+|+.+.+.-++++..
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~--------~~~v~~vD~s~~~~~~a~~~~~~  124 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL--------FREVDMVDITEDFLVQAKTYLGE  124 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT--------CSEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--------CCEEEEEeCCHHHHHHHHHHhhh
Confidence            4699999999999988765432        13799999999999988887753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.10  E-value=0.013  Score=49.76  Aligned_cols=50  Identities=16%  Similarity=0.248  Sum_probs=38.6

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++..   |    ..+++.||+||.+.+.-++++.
T Consensus        36 l~~~~~~~vLDiG~G~G~~~~~la~~~---~----~~~v~~vD~s~~~~~~a~~~~~   85 (204)
T 3e05_A           36 LRLQDDLVMWDIGAGSASVSIEASNLM---P----NGRIFALERNPQYLGFIRDNLK   85 (204)
T ss_dssp             TTCCTTCEEEEETCTTCHHHHHHHHHC---T----TSEEEEEECCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCHHHHHHHHHC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            344444699999999999998887652   2    2479999999999887777654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=96.10  E-value=0.031  Score=47.05  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=33.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-+++.
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~   83 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASL---------GHQIEGLEPATRLVELARQTH   83 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHT---------TCCEEEECCCHHHHHHHHHHC
T ss_pred             CeEEEecCCCCHHHHHHHhc---------CCeEEEEeCCHHHHHHHHHhC
Confidence            48999999999998877653         137999999999988777764

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.09  E-value=0.031  Score=49.44  Aligned_cols=82  Identities=10%  Similarity=0.100  Sum_probs=53.5

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      +...+|+|+|||+|.++..+.+.    +    ..+++.||+||.+.+.-++++.....                ..++.+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~----~----~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~~~v~~  100 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGH----V----TGQVTGLDFLSGFIDIFNRNARQSGL----------------QNRVTG  100 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTT----C----SSEEEEEESCHHHHHHHHHHHHHTTC----------------TTTEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhc----c----CCEEEEEeCCHHHHHHHHHHHHHcCC----------------CcCcEE
Confidence            34569999999999999887643    2    24799999999998887777643210                112333


Q ss_pred             e-cccccCC--CCCCEEEEEecccccccc
Q 021589          239 H-AALEQVP--SGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       239 ~-~sleelp--~~~~~vIiANE~fDALPv  264 (310)
                      . .++++++  .+..-+|+++..+..+..
T Consensus       101 ~~~d~~~~~~~~~~fD~i~~~~~~~~~~~  129 (267)
T 3kkz_A          101 IVGSMDDLPFRNEELDLIWSEGAIYNIGF  129 (267)
T ss_dssp             EECCTTSCCCCTTCEEEEEESSCGGGTCH
T ss_pred             EEcChhhCCCCCCCEEEEEEcCCceecCH
Confidence            2 2233443  232468888888777643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=96.08  E-value=0.023  Score=53.94  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=37.6

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++...  |    ..+++.||+|+.+.+.-++++.
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~--~----~~~v~gvD~s~~~l~~a~~~~~  129 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVG--E----HGKVIGVDMLDNQLEVARKYVE  129 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHT--T----TCEEEEEECCHHHHHHHHHTHH
T ss_pred             CCCEEEEecCccCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHHH
Confidence            346899999999999998887652  1    1479999999999888777654

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=96.07  E-value=0.021  Score=50.54  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      +...+|+|+|||+|.++..+.+.   .|.    .+++.||+|+.+.+.-++++.....                 ..+.+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~---~~~----~~v~~vD~s~~~~~~a~~~~~~~~~-----------------~~~~~   91 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKN---NPD----AEITSIDISPESLEKARENTEKNGI-----------------KNVKF   91 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHH---CTT----SEEEEEESCHHHHHHHHHHHHHTTC-----------------CSEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHHcCC-----------------CCcEE
Confidence            44569999999999999888765   232    4799999999999887777643111                 12333


Q ss_pred             ec-ccccCC--CCCCEEEEEeccccccc
Q 021589          239 HA-ALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       239 ~~-sleelp--~~~~~vIiANE~fDALP  263 (310)
                      .. ++.+++  .+..-+|+++.++..+|
T Consensus        92 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~  119 (276)
T 3mgg_A           92 LQANIFSLPFEDSSFDHIFVCFVLEHLQ  119 (276)
T ss_dssp             EECCGGGCCSCTTCEEEEEEESCGGGCS
T ss_pred             EEcccccCCCCCCCeeEEEEechhhhcC
Confidence            21 223332  23246888988887776

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.06  E-value=0.013  Score=50.55  Aligned_cols=91  Identities=12%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             hcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccc
Q 021589          111 LTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE  190 (310)
Q Consensus       111 LY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~  190 (310)
                      .+-|+..||.....+| .|..++.|.+..        ++++.... ......+|+|+|||+|.++..+.+.....+  ..
T Consensus        41 ~f~p~~~y~d~~~~~~-~~~~~~~p~~~~--------~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~--~~  108 (227)
T 2pbf_A           41 KYIKEIPYIDTPVYIS-HGVTISAPHMHA--------LSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLE--NK  108 (227)
T ss_dssp             GTCSSSTTSSSCEEEE-TTEEECCHHHHH--------HHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTT--CT
T ss_pred             HcCCcccCCCCccccC-CCCccCChHHHH--------HHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccC--CC
Confidence            4556655665443343 244566554321        22222211 122335999999999999998877642100  01


Q ss_pred             cceEEEEecChhhHHHHHHhccc
Q 021589          191 SLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       191 ~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+++.||+|+.+.+.-++++..
T Consensus       109 ~~~v~~vD~~~~~~~~a~~~~~~  131 (227)
T 2pbf_A          109 NSYVIGLERVKDLVNFSLENIKR  131 (227)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHH
Confidence            24799999999999888877653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=96.06  E-value=0.011  Score=50.07  Aligned_cols=44  Identities=14%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..++...   |.    .+++.||+|+.+.+.-++++.
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~  110 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVR---PE----AHFTLLDSLGKRVRFLRQVQH  110 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHC---TT----SEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHC---CC----CEEEEEeCCHHHHHHHHHHHH
Confidence            489999999999998887653   32    479999999999887777654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.06  E-value=0.012  Score=49.49  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-  239 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~-  239 (310)
                      ..+|+|+|||+|.++..+++..   +     .+++.||+|+.+.+.-++++...                   ..+.+. 
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~---~-----~~v~~~D~s~~~~~~a~~~~~~~-------------------~~i~~~~   95 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGG---F-----PNVTSVDYSSVVVAAMQACYAHV-------------------PQLRWET   95 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTT---C-----CCEEEEESCHHHHHHHHHHTTTC-------------------TTCEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHHcC---C-----CcEEEEeCCHHHHHHHHHhcccC-------------------CCcEEEE
Confidence            3589999999999998876531   1     16999999999998888776421                   122222 


Q ss_pred             cccccC--CCCCCEEEEEeccccccc
Q 021589          240 AALEQV--PSGFPTIIVAHEFYDALP  263 (310)
Q Consensus       240 ~sleel--p~~~~~vIiANE~fDALP  263 (310)
                      .++.++  +.+..-+|+++-.+++++
T Consensus        96 ~d~~~~~~~~~~fD~v~~~~~~~~~~  121 (215)
T 2pxx_A           96 MDVRKLDFPSASFDVVLEKGTLDALL  121 (215)
T ss_dssp             CCTTSCCSCSSCEEEEEEESHHHHHT
T ss_pred             cchhcCCCCCCcccEEEECcchhhhc
Confidence            112222  223246899999998887

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.04  E-value=0.015  Score=48.95  Aligned_cols=46  Identities=13%  Similarity=0.001  Sum_probs=37.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++..
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~--~----~~~v~~vD~s~~~~~~a~~~~~~   69 (197)
T 3eey_A           24 DTVVDATCGNGNDTAFLASLVG--E----NGRVFGFDIQDKAIANTTKKLTD   69 (197)
T ss_dssp             CEEEESCCTTSHHHHHHHHHHC--T----TCEEEEECSCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            5999999999999998887652  1    13799999999999888777653

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.04  E-value=0.012  Score=53.95  Aligned_cols=47  Identities=26%  Similarity=0.408  Sum_probs=37.8

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +....-+|+|+|||+|.++..+++..         -+++-||+|+.+.+.-++++.
T Consensus        25 ~~~~~~~VLDiG~G~G~lt~~L~~~~---------~~v~~vD~~~~~~~~a~~~~~   71 (285)
T 1zq9_A           25 ALRPTDVVLEVGPGTGNMTVKLLEKA---------KKVVACELDPRLVAELHKRVQ   71 (285)
T ss_dssp             CCCTTCEEEEECCTTSTTHHHHHHHS---------SEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHhhC---------CEEEEEECCHHHHHHHHHHHH
Confidence            43344589999999999999887652         269999999999988887764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.01  E-value=0.015  Score=48.41  Aligned_cols=44  Identities=16%  Similarity=0.030  Sum_probs=35.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-+|+|+|||+|.++..+.+.         ..+++-||+||.+.+.-++++..
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~---------~~~v~~vD~s~~~l~~a~~~~~~   66 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGL---------SKKVYAFDVQEQALGKTSQRLSD   66 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTT---------SSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCHHHHHHHHh---------CCEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999877543         24799999999999887777653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=95.95  E-value=0.029  Score=48.93  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+++...        .+++.||+|+.+.+.-++++.
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~--------~~v~~vD~~~~~~~~a~~~~~  135 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVK--------TDVYTIERIPELVEFAKRNLE  135 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHC--------SCEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhC--------CEEEEEeCCHHHHHHHHHHHH
Confidence            35899999999999998877641        269999999999988887764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.94  E-value=0.017  Score=47.53  Aligned_cols=44  Identities=20%  Similarity=0.310  Sum_probs=35.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++.         ..+++.||+||.+.+.-++++.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~---------~~~v~~~D~~~~~~~~a~~~~~   95 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE---------VKSTTMADINRRAIKLAKENIK   95 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG---------SSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHHHHH
Confidence            4469999999999998876543         2479999999999988877764

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=95.93  E-value=0.017  Score=51.26  Aligned_cols=62  Identities=10%  Similarity=0.012  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+..|+.........+...+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++..
T Consensus        48 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~----~~~v~gvD~s~~~~~~a~~~~~~  109 (298)
T 1ri5_A           48 NANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERA----G----IGEYYGVDIAEVSINDARVRARN  109 (298)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHH----T----CSEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHC----C----CCEEEEEECCHHHHHHHHHHHHh
Confidence            34455544443322233469999999999988875543    1    13799999999999888777653

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.93  E-value=0.008  Score=52.41  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE---------GIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH---------TCCEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCHHHHHHHhC---------CCcEEEEECCHHHHHHHHhh
Confidence            358999999999998766553         13689999999998876665

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.90  E-value=0.026  Score=54.79  Aligned_cols=75  Identities=16%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCc-C-----ccccceEEEEecC
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFK-N-----FTESLHIHLVECS  200 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p-~-----~~~~l~y~iVE~S  200 (310)
                      ..|.|+|+.+|..+..+++           ......+|+|.|||+|.|...+.+.+.... +     .....+++-+|++
T Consensus       149 ~~G~fyTP~~v~~~mv~~l-----------~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~  217 (445)
T 2okc_A          149 GAGQYFTPRPLIQAMVDCI-----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  217 (445)
T ss_dssp             CCGGGCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             cCCcccCcHHHHHHHHHHh-----------CCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC
Confidence            4689999998765544432           112235899999999999999888874311 0     0112469999999


Q ss_pred             hhhHHHHHHhcc
Q 021589          201 PTLQKLQHHNLK  212 (310)
Q Consensus       201 P~Lr~~Q~e~L~  212 (310)
                      |.+.+.-+.++.
T Consensus       218 ~~~~~lA~~nl~  229 (445)
T 2okc_A          218 PLVVTLASMNLY  229 (445)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999887766553

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.85  E-value=0.019  Score=47.15  Aligned_cols=47  Identities=17%  Similarity=0.238  Sum_probs=36.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ......+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++++.
T Consensus        30 ~~~~~~~vldiG~G~G~~~~~l~~~~---------~~v~~~D~~~~~~~~a~~~~~   76 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGTGGVTLELAGRV---------RRVYAIDRNPEAISTTEMNLQ   76 (192)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTS---------SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHhc---------CEEEEEECCHHHHHHHHHHHH
Confidence            33344699999999999988776532         379999999999887777664

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=95.81  E-value=0.0067  Score=54.92  Aligned_cols=46  Identities=20%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      +....-+|+|+|||+|.++..+++.    +    ..+++.||+++.+.+.-+++
T Consensus        28 ~~~~~~~VLDiG~G~G~lt~~L~~~----~----~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           28 NIEEGNTVVEVGGGTGNLTKVLLQH----P----LKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHTTS----C----CSEEEEECCCHHHHHHHTTS
T ss_pred             CCCCcCEEEEEcCchHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHhc
Confidence            4333458999999999999887643    1    14799999999999877765

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.80  E-value=0.019  Score=52.82  Aligned_cols=71  Identities=17%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             CCChhHHHHHHHHHHHHHHHH----HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          134 SPEVSQMFGEMVGVWAMCLWE----QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~~~~w~----~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|+....|...++.+......    ....+...+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+.-++
T Consensus       139 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~~  210 (332)
T 3i53_A          139 DPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTA---HED----LSGTVLDL-QGPASAAHR  210 (332)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhHHhhHHHHHHhCCCCCCCEEEEeCCChhHHHHHHHHH---CCC----CeEEEecC-HHHHHHHHH
Confidence            456666676666554322221    223234569999999999999988775   343    57899999 888777776


Q ss_pred             hcc
Q 021589          210 NLK  212 (310)
Q Consensus       210 ~L~  212 (310)
                      ++.
T Consensus       211 ~~~  213 (332)
T 3i53_A          211 RFL  213 (332)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=95.76  E-value=0.011  Score=59.57  Aligned_cols=75  Identities=16%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      +.|.|||+++|..+..+++...       .......+|++.+||+|.|...+++.+...+    ..+++-+|++|....+
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~-------~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~----~~~i~G~Eid~~~~~l  263 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLG-------REDKQGFTLYDATMGSGSLLLNAKRYSRQPQ----TVVYFGQELNTSTYNL  263 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTT-------CTTCTTCEEEETTCTTSTTGGGHHHHCSCTT----TCEEEEEESCHHHHHH
T ss_pred             cCCeecccHHHHHHHHHHHhcc-------cCCCCCCEEeecccchhHHHHHHHHHHHhcc----CceEEEEECcHHHHHH
Confidence            4799999999988766654321       0011345999999999999988888764321    3589999999999887


Q ss_pred             HHHhcc
Q 021589          207 QHHNLK  212 (310)
Q Consensus       207 Q~e~L~  212 (310)
                      -+.++.
T Consensus       264 A~~Nl~  269 (542)
T 3lkd_A          264 ARMNMI  269 (542)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.75  E-value=0.032  Score=50.25  Aligned_cols=94  Identities=13%  Similarity=-0.029  Sum_probs=53.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccc--ccCCcCccchhhhhcccCCCCeEE
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM--DENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~--~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      ..+|+|+|||+|.++..+.+.    .     .+++-||+|+.+.+.-+++....  ...+.... +.. +-......+.|
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~----G-----~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~~  137 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR----G-----HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIA-GAK-VFKSSSGSISL  137 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT----T-----CEEEEECSCHHHHHHHHHHTTCCEEEEECTTST-TCE-EEEETTSSEEE
T ss_pred             CCeEEEeCCCCcHHHHHHHHC----C-----CeEEEEECCHHHHHHHHHhcccccccccccccc-ccc-ccccCCCceEE
Confidence            459999999999998776542    1     36999999999988766544210  00000000 000 00000124555


Q ss_pred             e-cccccCCC---CCCEEEEEecccccccce
Q 021589          239 H-AALEQVPS---GFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       239 ~-~sleelp~---~~~~vIiANE~fDALPvh  265 (310)
                      . .++.+++.   +..-+|+++-+|.++|..
T Consensus       138 ~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~  168 (252)
T 2gb4_A          138 YCCSIFDLPRANIGKFDRIWDRGALVAINPG  168 (252)
T ss_dssp             EESCTTTGGGGCCCCEEEEEESSSTTTSCGG
T ss_pred             EECccccCCcccCCCEEEEEEhhhhhhCCHH
Confidence            3 23334432   224678899999999864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=95.75  E-value=0.034  Score=46.77  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=33.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..++...    .    .+++.||+|+.+.+.-++++.
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~----~----~~v~~vD~s~~~~~~a~~~~~   67 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVED----G----YKTYGIEISDLQLKKAENFSR   67 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHT----T----CEEEEEECCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHhC----C----CEEEEEECCHHHHHHHHHHHH
Confidence            3599999999999865555321    1    379999999999887777654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=95.74  E-value=0.016  Score=47.87  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=35.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|.++..++..    +    ..+++.||+|+.+.+.-++++.
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~----~----~~~v~~vD~~~~~~~~a~~~~~   88 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSR----G----MDKSICIEKNFAALKVIKENIA   88 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEeCCccCHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHHHH
Confidence            359999999999998877652    1    1379999999999887777664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=95.70  E-value=0.0098  Score=58.59  Aligned_cols=51  Identities=14%  Similarity=0.118  Sum_probs=37.2

Q ss_pred             HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       150 ~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      ..+.+.++.....+|+|+|||+|.++..+....   +    ..+++-||+|+.+.+.-
T Consensus       232 ~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~---g----~~~V~GVDis~~~l~~A  282 (433)
T 1u2z_A          232 SDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC---G----CALSFGCEIMDDASDLT  282 (433)
T ss_dssp             HHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH---C----CSEEEEEECCHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHC---C----CCEEEEEeCCHHHHHHH
Confidence            334445555455699999999999999887653   2    13699999999986654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.69  E-value=0.021  Score=54.31  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=50.3

Q ss_pred             hhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCcc
Q 021589          110 VLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFT  189 (310)
Q Consensus       110 aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~  189 (310)
                      .+|+..+.|+...               ++.+-+.....+..+.+.++.....+|+|+|||+|.++..+.+.        
T Consensus        72 ~~y~~~y~~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~--------  128 (416)
T 4e2x_A           72 LMFHEVYPYHSSG---------------SSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA--------  128 (416)
T ss_dssp             HHSSTTCCCCGGG---------------CHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT--------
T ss_pred             HhccCCccCcCcC---------------CHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc--------
Confidence            4577666665532               23333333334444445555545569999999999988877642        


Q ss_pred             ccceEEEEecChhhHHHHHHh
Q 021589          190 ESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       190 ~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                       ..+++-||+|+.+.+.-+++
T Consensus       129 -g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          129 -GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             -TCEEEEECCCHHHHHHHHTT
T ss_pred             -CCcEEEECCCHHHHHHHHHc
Confidence             13799999999988766654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.66  E-value=0.038  Score=49.33  Aligned_cols=46  Identities=9%  Similarity=0.063  Sum_probs=37.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +-+|+|+|||+|.+|.-+..   ..|.    .+|+-+|+|+.+.+.-++++..
T Consensus        50 ~~~VLDlGCG~GplAl~l~~---~~p~----a~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWN---ENEK----IIYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHC---SSCC----CEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHh---cCCC----CEEEEEeCCHHHHHHHHHHHHh
Confidence            45999999999999987643   2343    3899999999999998888754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.66  E-value=0.014  Score=50.90  Aligned_cols=44  Identities=11%  Similarity=0.105  Sum_probs=34.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+.   .+     .+++.||+|+.+.+.-+++..
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~---~~-----~~v~gvD~s~~~l~~a~~~~~  104 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEA---PI-----DEHWIIECNDGVFQRLRDWAP  104 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTS---CE-----EEEEEEECCHHHHHHHHHHGG
T ss_pred             CCeEEEEeccCCHHHHHHHhc---CC-----CeEEEEcCCHHHHHHHHHHHH
Confidence            369999999999998876321   11     278999999999888777664

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=95.62  E-value=0.03  Score=49.29  Aligned_cols=46  Identities=11%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|..+..+++.+.  +    ..+++.||+|+.+.+.-++++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~--~----~~~v~~vD~~~~~~~~a~~~~~~  103 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLA--D----NTTLTCIDPESEHQRQAKALFRE  103 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSC--T----TSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHhCC--C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            4899999999999998887642  1    24799999999998888877753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.61  E-value=0.011  Score=59.75  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcC-cCc-------cccceEEEEe
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF-------TESLHIHLVE  198 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~-p~~-------~~~l~y~iVE  198 (310)
                      +.|.|+|+++|..+..+++            .|.+.+|++.+||+|.|...+++++... ++.       .....++-+|
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll------------~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~E  290 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEML------------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQE  290 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHH------------CCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECC
T ss_pred             cCCeEeCCHHHHHHHHHHH------------hcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEe
Confidence            4699999999987766654            2334599999999999999888776421 110       1146899999


Q ss_pred             cChhhHHHHHHhc
Q 021589          199 CSPTLQKLQHHNL  211 (310)
Q Consensus       199 ~SP~Lr~~Q~e~L  211 (310)
                      ++|...++-+.+|
T Consensus       291 id~~~~~lA~~Nl  303 (544)
T 3khk_A          291 SNPTTWKLAAMNM  303 (544)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988777655

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.58  E-value=0.016  Score=50.29  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=34.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|.++..+.+.   .|+    .+++-||+|+.+.+.-++++.
T Consensus        40 ~~vLDiGcG~G~~~~~la~~---~p~----~~v~giD~s~~~l~~a~~~~~   83 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQ---NPD----INYIGIELFKSVIVTAVQKVK   83 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHH---CTT----SEEEEECSCHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCHHHHHHHHH---CCC----CCEEEEEechHHHHHHHHHHH
Confidence            48999999999999887654   343    479999999999887666553

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.58  E-value=0.018  Score=49.51  Aligned_cols=44  Identities=11%  Similarity=0.259  Sum_probs=35.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|.++..+.+.   .|+    .+++-||+|+.+.+.-++++.
T Consensus        43 ~~vLDiGcG~G~~~~~la~~---~p~----~~v~gvD~s~~~l~~a~~~~~   86 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQ---NPD----INYIGIDIQKSVLSYALDKVL   86 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHH---CTT----SEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHH---CCC----CCEEEEEcCHHHHHHHHHHHH
Confidence            48999999999999887654   332    479999999999887776654

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.57  E-value=0.02  Score=55.01  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=53.6

Q ss_pred             CCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcC---CCCcceEEEecCCchHHHHHHHHHHhcCcC
Q 021589          114 PKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG---QPNRVNLVELGPGRGTLMADLLRGASKFKN  187 (310)
Q Consensus       114 P~~GYY~~---~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g---~p~~l~IvElGaG~GtLa~DIL~~l~~~p~  187 (310)
                      |-.||..-   +..+|..  |++.+.+..-    |+.    ...-..   .+....|||||||.|.|+..+|+..+.   
T Consensus        16 ~~~~~~~~~~~kk~lGQn--FL~d~~i~~~----Iv~----~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~---   82 (353)
T 1i4w_A           16 PIPGIKDISKLKFFYGFK--YLWNPTVYNK----IFD----KLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP---   82 (353)
T ss_dssp             CCCCCCTTCSSCCGGGCC--CBCCHHHHHH----HHH----HHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC---
T ss_pred             cccchhhccCCCCCCCcC--ccCCHHHHHH----HHH----hccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCC---
Confidence            45566543   2346644  9998877422    222    211111   112368999999999999999986421   


Q ss_pred             ccccceEEEEecChhhHHHHHHhc
Q 021589          188 FTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       188 ~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                          -+++.||+.+.|....++++
T Consensus        83 ----~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           83 ----RQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             ----SEEEEECCCHHHHHHHHHHT
T ss_pred             ----CEEEEEecCHHHHHHHHHhc
Confidence                26999999999999888776

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=95.56  E-value=0.029  Score=48.69  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=35.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+.+..         .+++-||+||.+.+.-++++.
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~---------~~v~~vD~s~~~~~~a~~~~~  121 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTG---------MRVIAIDIDPVKIALARNNAE  121 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEECccccCHHHHHHHHcC---------CEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887531         479999999999887777664

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=95.56  E-value=0.037  Score=44.80  Aligned_cols=42  Identities=19%  Similarity=0.185  Sum_probs=34.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+++.   .+      +++-||+|+.+.+.-++++.
T Consensus        43 ~~vLD~GcG~G~~~~~l~~~---~~------~v~~vD~~~~~~~~a~~~~~   84 (171)
T 1ws6_A           43 GRFLDPFAGSGAVGLEAASE---GW------EAVLVEKDPEAVRLLKENVR   84 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHT---TC------EEEEECCCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHHC---CC------eEEEEeCCHHHHHHHHHHHH
Confidence            48999999999998877653   12      38999999999888777664

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.54  E-value=0.065  Score=49.33  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..-+|+|+|||+|.++..+.+....      ..+++.||+|+.+.+.-++++.
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~------~~~v~gvD~s~~~~~~a~~~~~  121 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGE------KGLVVSVEYSRKICEIAKRNVE  121 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCT------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCC------CCEEEEEECCHHHHHHHHHHHH
Confidence            3459999999999999888765421      2469999999999988777764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=95.54  E-value=0.03  Score=53.52  Aligned_cols=51  Identities=22%  Similarity=0.303  Sum_probs=39.1

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.....-+|+|+|||+|.++..+.+..   |.    .+++.||+|+.+.+.-++++..
T Consensus       218 l~~~~~~~VLDlGcG~G~~s~~la~~~---p~----~~V~gvD~s~~al~~Ar~n~~~  268 (375)
T 4dcm_A          218 LPENLEGEIVDLGCGNGVIGLTLLDKN---PQ----AKVVFVDESPMAVASSRLNVET  268 (375)
T ss_dssp             CCCSCCSEEEEETCTTCHHHHHHHHHC---TT----CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccCCCeEEEEeCcchHHHHHHHHHC---CC----CEEEEEECcHHHHHHHHHHHHH
Confidence            333333699999999999999887652   32    4799999999998887777653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.53  E-value=0.032  Score=49.81  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=38.2

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .++.+.....   ...+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-++++
T Consensus        47 ~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~   99 (293)
T 3thr_A           47 AWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEE---------GFSVTSVDASDKMLKYALKER   99 (293)
T ss_dssp             HHHHHHHHHT---TCCEEEETTCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHhccc---CCCEEEEecCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHhh
Confidence            4444444332   2358999999999999887653         127999999999988766654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=95.52  E-value=0.033  Score=49.95  Aligned_cols=45  Identities=22%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..++...   |.    .+++.||+|+.+.+.-++++.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~---~~----~~v~~vD~s~~~l~~a~~n~~  154 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASER---PD----CEIIAVDRMPDAVSLAQRNAQ  154 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHC---TT----SEEEEECSSHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHhC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            3589999999999998877543   32    479999999999887777654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.51  E-value=0.017  Score=54.63  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       126 G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      +..|.|+|++++.....+.           +..+...+|+|+|||+|.++..+++...      ...+++-||++|.+.+
T Consensus        16 ~~~g~~~TP~~l~~~~~~~-----------~~~~~~~~vLD~gcGtG~~~~~~~~~~~------~~~~i~gvDi~~~~~~   78 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSL-----------AEAPRGGRVLEPACAHGPFLRAFREAHG------TAYRFVGVEIDPKALD   78 (421)
T ss_dssp             -----CCCCHHHHHHHHHH-----------CCCCTTCEEEEETCTTCHHHHHHHHHHC------SCSEEEEEESCTTTCC
T ss_pred             ccCceEeCCHHHHHHHHHh-----------hccCCCCEEEECCCCChHHHHHHHHHhC------CCCeEEEEECCHHHHH
Confidence            4578999987765443332           1222335999999999999998877641      1247899999987754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=95.51  E-value=0.044  Score=50.77  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=45.5

Q ss_pred             CChhHHHHHHHHHH----HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          135 PEVSQMFGEMVGVW----AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       135 peIs~~FGe~Ia~~----~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      |+....|...+...    +..+.+.++.....+|+|+|||+|.++..+++..   |+    ++++.+|+ |.+.+.-+++
T Consensus       154 p~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---~~----~~~~~~D~-~~~~~~a~~~  225 (360)
T 1tw3_A          154 PDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA---PH----VSATVLEM-AGTVDTARSY  225 (360)
T ss_dssp             HHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-TTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC---CC----CEEEEecC-HHHHHHHHHH
Confidence            44555555553311    1122334444445699999999999998887653   32    57899999 8877766666


Q ss_pred             cc
Q 021589          211 LK  212 (310)
Q Consensus       211 L~  212 (310)
                      +.
T Consensus       226 ~~  227 (360)
T 1tw3_A          226 LK  227 (360)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.48  E-value=0.042  Score=48.09  Aligned_cols=51  Identities=25%  Similarity=0.224  Sum_probs=39.7

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++.+.  |    ..+++.+|+||.+.+.-++++.
T Consensus        89 ~~~~~~~~vldiG~G~G~~~~~l~~~~~--~----~~~v~~~D~~~~~~~~a~~~~~  139 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGSGALTLFLANIVG--P----EGRVVSYEIREDFAKLAWENIK  139 (255)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEECSCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEecCCchHHHHHHHHHhC--C----CeEEEEEecCHHHHHHHHHHHH
Confidence            3444446999999999999999887642  2    2479999999999888777764

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.48  E-value=0.033  Score=47.37  Aligned_cols=43  Identities=19%  Similarity=0.075  Sum_probs=34.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+.   .+      +++.||+||.+.+.-++++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~---~~------~v~~vD~s~~~~~~a~~~~~   81 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDY---GF------EVVGVDISEDMIRKAREYAK   81 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT---TC------EEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEeccCCHHHHHHHHc---CC------EEEEEECCHHHHHHHHHHHH
Confidence            469999999999998766543   22      79999999999887777654

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=95.47  E-value=0.046  Score=50.84  Aligned_cols=64  Identities=20%  Similarity=0.311  Sum_probs=44.2

Q ss_pred             CCChhHHHHHHHHHHH----HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          134 SPEVSQMFGEMVGVWA----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~----~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      .|+....|....+.+-    ..+.+..+.+...+|+|+|||+|.++..+++..   |.    ++++.+|.++.+.
T Consensus       154 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---p~----~~~~~~D~~~~~~  221 (348)
T 3lst_A          154 DAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLREH---PG----LQGVLLDRAEVVA  221 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHC---TT----EEEEEEECHHHHT
T ss_pred             CHHHHHHHHHHHHHhhhhhHHHHHHhCCccCCceEEEECCccCHHHHHHHHHC---CC----CEEEEecCHHHhh
Confidence            4666667776665542    233444555566799999999999999988753   43    5789999954433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=95.46  E-value=0.029  Score=52.24  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=37.6

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++..   |.    ++++.+|+ |.+.+.-++++.
T Consensus       178 ~~~~~~~~vlDvG~G~G~~~~~l~~~~---~~----~~~~~~D~-~~~~~~a~~~~~  226 (374)
T 1qzz_A          178 YDWSAVRHVLDVGGGNGGMLAAIALRA---PH----LRGTLVEL-AGPAERARRRFA  226 (374)
T ss_dssp             SCCTTCCEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCcCHHHHHHHHHC---CC----CEEEEEeC-HHHHHHHHHHHH
Confidence            344445699999999999999887753   32    58999999 888877776664

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.45  E-value=0.017  Score=48.78  Aligned_cols=40  Identities=23%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-+++
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADR---------GIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCCHHHHHHHHC---------CCEEEEEcCCHHHHHHHHHh
Confidence            69999999999998776543         13799999999988876665

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=95.43  E-value=0.025  Score=51.60  Aligned_cols=62  Identities=19%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..|-|+++...+..     .|.+.+|+++|+|+|.++..+++.   .+    ..+++.||++|.+.+.-++.+.
T Consensus        59 ~~y~e~l~~~~l~~-----~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           59 FVYHEMVAHVPLFT-----HPNPEHVLVVGGGDGGVIREILKH---PS----VKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             HHHHHHHHHHHHHH-----SSSCCEEEEESCTTCHHHHHHTTC---TT----CSEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHhh-----CCCCCEEEEECCchHHHHHHHHhC---CC----CceEEEEECCHHHHHHHHHHhH
Confidence            35667776543211     244569999999999999887643   12    2479999999999998888774

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.40  E-value=0.026  Score=49.53  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=34.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|+|+|||+|.++..+.+.   .|+    ..++-||+|+.+.+.-++++.
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~---~p~----~~v~giD~s~~~l~~a~~~~~   79 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKD---RPE----QDFLGIEVHSPGVGACLASAH   79 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHH---CTT----SEEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEEEeeeChHHHHHHHHH---CCC----CeEEEEEecHHHHHHHHHHHH
Confidence            48999999999998887653   343    479999999998876666553

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.40  E-value=0.04  Score=48.91  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=39.2

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++.
T Consensus        95 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~vD~~~~~~~~a~~~~~  145 (280)
T 1i9g_A           95 GDIFPGARVLEAGAGSGALTLSLLRAVG--P----AGQVISYEQRADHAEHARRNVS  145 (280)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEECSCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcccccHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            3433345999999999999999887642  1    1479999999999888777664

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=95.37  E-value=0.046  Score=47.59  Aligned_cols=51  Identities=20%  Similarity=0.279  Sum_probs=39.3

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++.+.  |    ..+++.+|+|+.+.+.-++++.
T Consensus        92 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~----~~~v~~~D~~~~~~~~a~~~~~  142 (258)
T 2pwy_A           92 LDLAPGMRVLEAGTGSGGLTLFLARAVG--E----KGLVESYEARPHHLAQAERNVR  142 (258)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHC--T----TSEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHhC--C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            3433445999999999999998887642  1    1379999999999888777764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=95.37  E-value=0.028  Score=48.53  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=35.9

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+++.+.      ...+++.||+||.+.+.-++++.
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~  104 (221)
T 3u81_A           60 SLVLELGAYCGYSAVRMARLLQ------PGARLLTMEINPDCAAITQQMLN  104 (221)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSC------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHhCC------CCCEEEEEeCChHHHHHHHHHHH
Confidence            4899999999999988876431      12479999999999887777654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=95.36  E-value=0.026  Score=55.82  Aligned_cols=65  Identities=17%  Similarity=0.206  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      +..|||+....+..+.+.++....-+|+++|||+|.++..+...   .+    .-+++-||+|+.+.+.-++
T Consensus       151 ~~vYGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~---~g----~~kVvGIDiS~~~lelAr~  215 (438)
T 3uwp_A          151 PEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA---TN----CKHHYGVEKADIPAKYAET  215 (438)
T ss_dssp             GGGGGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHH---CC----CSEEEEEECCHHHHHHHHH
T ss_pred             CcccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHH
Confidence            46788888888888888887665679999999999999877543   22    1259999999987665544

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.36  E-value=0.035  Score=47.89  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=36.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +....-+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        52 ~~~~~~~vLDlGcG~G~~~~~la~~---------~~~v~~vD~s~~~~~~a~~~~~   98 (204)
T 3njr_A           52 APRRGELLWDIGGGSGSVSVEWCLA---------GGRAITIEPRADRIENIQKNID   98 (204)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            4334468999999999999877653         1479999999999887777654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=95.35  E-value=0.031  Score=51.59  Aligned_cols=62  Identities=18%  Similarity=0.360  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..|-++++...+     ...+.+.+|+|+|||+|.++..+++.   .+    ..+++.||+||.+.+..++++.
T Consensus        79 ~~y~e~l~~~~l-----~~~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~a~~~~~  140 (304)
T 3bwc_A           79 FVYHEVLGHTSL-----CSHPKPERVLIIGGGDGGVLREVLRH---GT----VEHCDLVDIDGEVMEQSKQHFP  140 (304)
T ss_dssp             HHHHHHHHHHHH-----TTSSSCCEEEEEECTTSHHHHHHHTC---TT----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHhhhhh-----hcCCCCCeEEEEcCCCCHHHHHHHhC---CC----CCEEEEEECCHHHHHHHHHHhH
Confidence            346666554321     22344569999999999999888753   12    2479999999999998888773

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.35  E-value=0.044  Score=44.98  Aligned_cols=44  Identities=14%  Similarity=0.283  Sum_probs=35.4

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-++++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~---------~~~v~~~D~~~~~~~~a~~~~~   89 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ---------GHDVLGTDLDPILIDYAKQDFP   89 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEECCCCCHHHHHHHHC---------CCcEEEEcCCHHHHHHHHHhCC
Confidence            3459999999999998877653         1379999999999887777653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=95.32  E-value=0.059  Score=49.75  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             cCCChhHHHHHHHHHHHH---HHHHHcCCCC-cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          133 TSPEVSQMFGEMVGVWAM---CLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       133 TSpeIs~~FGe~Ia~~~~---~~w~~~g~p~-~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      +.|+....|.........   .+.+..+... ..+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+.-+
T Consensus       148 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~  219 (352)
T 3mcz_A          148 HDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVLRR---HPQ----LTGQIWDL-PTTRDAAR  219 (352)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHH---CTT----CEEEEEEC-GGGHHHHH
T ss_pred             cCHHHHHHHHHHHHhhhhhHHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHh---CCC----CeEEEEEC-HHHHHHHH
Confidence            456666666665544222   2333343333 579999999999999998865   343    57999999 76666555


Q ss_pred             Hhcc
Q 021589          209 HNLK  212 (310)
Q Consensus       209 e~L~  212 (310)
                      +++.
T Consensus       220 ~~~~  223 (352)
T 3mcz_A          220 KTIH  223 (352)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.32  E-value=0.038  Score=47.88  Aligned_cols=62  Identities=21%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             eecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       131 FiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .+..|+...++...+...+         +...+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-+++
T Consensus        28 ~~~~~~~~~l~~~~~~~~~---------~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~   89 (226)
T 3m33_A           28 VLSGPDPELTFDLWLSRLL---------TPQTRVLEAGCGHGPDAARFGPQ---------AARWAAYDFSPELLKLARAN   89 (226)
T ss_dssp             EESSSCTTHHHHHHHHHHC---------CTTCEEEEESCTTSHHHHHHGGG---------SSEEEEEESCHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhcC---------CCCCeEEEeCCCCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHh
Confidence            4455666666665544321         22359999999999988877543         13799999999998877765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=95.32  E-value=0.035  Score=45.73  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=36.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++..
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~----~----~~~v~~vD~~~~~~~~a~~~~~~   76 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR----G----MSAAVLVEKNRKAQAIIQDNIIM   76 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT----T----CCEEEEECCCHHHHHHHHHHHHT
T ss_pred             CCeEEEeCCCCCHHHHHHHHc----C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999877653    2    13799999999999888877653

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.31  E-value=0.029  Score=48.27  Aligned_cols=45  Identities=13%  Similarity=0.063  Sum_probs=36.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.+   |.   ..+++.||+||.+.+..++++.
T Consensus        71 ~~vLdiG~G~G~~~~~la~~~---~~---~~~v~~vD~~~~~~~~a~~~~~  115 (229)
T 2avd_A           71 KKALDLGTFTGYSALALALAL---PA---DGRVVTCEVDAQPPELGRPLWR  115 (229)
T ss_dssp             CEEEEECCTTSHHHHHHHTTS---CT---TCEEEEEESCSHHHHHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876543   21   2489999999999998887764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=95.31  E-value=0.046  Score=47.75  Aligned_cols=45  Identities=13%  Similarity=0.112  Sum_probs=36.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.+   |.   ..+++.||+||.+.+.-++++.
T Consensus        62 ~~VLdiG~G~G~~~~~la~~~---~~---~~~v~~vD~~~~~~~~a~~~~~  106 (239)
T 2hnk_A           62 KRIIEIGTFTGYSSLCFASAL---PE---DGKILCCDVSEEWTNVARKYWK  106 (239)
T ss_dssp             SEEEEECCTTCHHHHHHHHHS---CT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999999887754   21   2479999999999988877764

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.28  E-value=0.023  Score=51.45  Aligned_cols=61  Identities=13%  Similarity=0.018  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       146 a~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      |..++.-.+.++...--+|+|+|||+|+++..+.+.....      =+++-||+||.+.+.-+++..
T Consensus        63 aa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~------G~V~avD~s~~~~~~l~~~a~  123 (233)
T 4df3_A           63 AAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPR------GRIYGVEFAPRVMRDLLTVVR  123 (233)
T ss_dssp             HHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTT------CEEEEEECCHHHHHHHHHHST
T ss_pred             HHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCC------ceEEEEeCCHHHHHHHHHhhH
Confidence            3333333444554344699999999999999988765321      268899999999877666554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=95.26  E-value=0.038  Score=48.39  Aligned_cols=45  Identities=20%  Similarity=0.314  Sum_probs=36.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|.++..+++.   .|    ..+++.||+|+.+.+.-++++..
T Consensus        73 ~~vLDiG~G~G~~~~~la~~---~~----~~~v~~vD~~~~~~~~a~~~~~~  117 (232)
T 3ntv_A           73 KNILEIGTAIGYSSMQFASI---SD----DIHVTTIERNETMIQYAKQNLAT  117 (232)
T ss_dssp             CEEEEECCSSSHHHHHHHTT---CT----TCEEEEEECCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCchhHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            49999999999999887652   22    25899999999999888877753

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=95.25  E-value=0.042  Score=46.89  Aligned_cols=45  Identities=16%  Similarity=0.070  Sum_probs=36.2

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|..+..+++.+   |.   ..+++.||+|+.+.+.-++++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~---~~---~~~v~~vD~~~~~~~~a~~~~~  102 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAI---SI---SSRVVMIDPDRDNVEHARRMLH  102 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTS---CT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876643   21   2479999999999988777664

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=95.24  E-value=0.029  Score=51.71  Aligned_cols=61  Identities=25%  Similarity=0.378  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .|-|+++...+..     .+.+.+|+|+|||+|.++..+++..   +    ..+++.||+||.+.+.-++++.
T Consensus        75 ~y~e~l~~~~l~~-----~~~~~~VLdiG~G~G~~~~~l~~~~---~----~~~v~~vDid~~~~~~a~~~~~  135 (296)
T 1inl_A           75 MYHEMLAHVPMFL-----HPNPKKVLIIGGGDGGTLREVLKHD---S----VEKAILCEVDGLVIEAARKYLK  135 (296)
T ss_dssp             HHHHHHHHHHHHH-----SSSCCEEEEEECTTCHHHHHHTTST---T----CSEEEEEESCHHHHHHHHHHCH
T ss_pred             HHHHHHhHHHHhc-----CCCCCEEEEEcCCcCHHHHHHHhcC---C----CCEEEEEECCHHHHHHHHHHhH
Confidence            5667776443211     2344699999999999998886531   2    2479999999999998887764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=95.23  E-value=0.03  Score=47.86  Aligned_cols=40  Identities=10%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ...+|+|+|||+|.++..+.+.   .|.    .+++-||+|+.+.+.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~---~p~----~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQ---NPS----RLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHH---CTT----EEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHH---CCC----CEEEEEECCHHHHHH
Confidence            3468999999999999988764   332    479999999996554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=95.23  E-value=0.04  Score=48.67  Aligned_cols=44  Identities=11%  Similarity=0.184  Sum_probs=35.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..+|+|+|||+|.++..+++.+   |.    .+++.||+|+.+.+.-+++.
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~  129 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADAL---PE----ITTFGLDVSKVAIKAAAKRY  129 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTC---TT----SEEEEEESCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCHHHHHHHHhC---CC----CeEEEEeCCHHHHHHHHHhC
Confidence            3589999999999999887643   21    47999999999988777654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=95.20  E-value=0.02  Score=52.90  Aligned_cols=63  Identities=13%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       130 DFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|.+.+++..        .+++.   ++....-+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-++
T Consensus        23 ~fl~~~~i~~--------~i~~~---~~~~~~~~VLDiG~G~G~lt~~La~~---------~~~v~~vDi~~~~~~~a~~   82 (299)
T 2h1r_A           23 HLLKNPGILD--------KIIYA---AKIKSSDIVLEIGCGTGNLTVKLLPL---------AKKVITIDIDSRMISEVKK   82 (299)
T ss_dssp             CEECCHHHHH--------HHHHH---HCCCTTCEEEEECCTTSTTHHHHTTT---------SSEEEEECSCHHHHHHHHH
T ss_pred             ceecCHHHHH--------HHHHh---cCCCCcCEEEEEcCcCcHHHHHHHhc---------CCEEEEEECCHHHHHHHHH
Confidence            5888776532        22222   23333458999999999999877542         1379999999999988777


Q ss_pred             hcc
Q 021589          210 NLK  212 (310)
Q Consensus       210 ~L~  212 (310)
                      ++.
T Consensus        83 ~~~   85 (299)
T 2h1r_A           83 RCL   85 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            663

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=95.19  E-value=0.05  Score=47.17  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=36.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.+   |    ..+++.||+|+.+.+.-++++.
T Consensus        56 ~~vLdiG~G~G~~~~~la~~~---~----~~~v~~vD~~~~~~~~a~~~~~   99 (233)
T 2gpy_A           56 ARILEIGTAIGYSAIRMAQAL---P----EATIVSIERDERRYEEAHKHVK   99 (233)
T ss_dssp             SEEEEECCTTSHHHHHHHHHC---T----TCEEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEecCCCcHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999999887653   3    2479999999999888777664

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.18  E-value=0.023  Score=49.47  Aligned_cols=49  Identities=14%  Similarity=0.126  Sum_probs=37.0

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +....-+|+|+|||+|+++..+++..   +    ..+++-||+|+.+.+.-+++..
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~---~----~~~v~gvD~s~~~~~~a~~~~~  119 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIA---D----KGIVYAIEYAPRIMRELLDACA  119 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHT---T----TSEEEEEESCHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHc---C----CcEEEEEECCHHHHHHHHHHhh
Confidence            33344589999999999998887653   2    1379999999998877666554

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=95.16  E-value=0.025  Score=49.36  Aligned_cols=48  Identities=8%  Similarity=0.092  Sum_probs=37.0

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+.+.   .      -+++.||+|+.+.+.-++++.
T Consensus        17 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~------~~v~~vD~s~~~~~~a~~~~~   64 (239)
T 1xxl_A           17 AECRAEHRVLDIGAGAGHTALAFSPY---V------QECIGVDATKEMVEVASSFAQ   64 (239)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHH
T ss_pred             hCcCCCCEEEEEccCcCHHHHHHHHh---C------CEEEEEECCHHHHHHHHHHHH
Confidence            34445569999999999998876542   1      179999999999887777664

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.15  E-value=0.049  Score=48.12  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=34.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+.         ..+++.||+|+.+.+.-+++..
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~---------~~~v~gvD~s~~~l~~a~~~~~   97 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER---------GFEVVLVDPSKEMLEVAREKGV   97 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHHTC
T ss_pred             CCeEEEeCCCcCHHHHHHHHc---------CCeEEEEeCCHHHHHHHHhhcC
Confidence            459999999999998877542         1379999999999887777653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=95.15  E-value=0.041  Score=46.50  Aligned_cols=43  Identities=16%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...+|+|+|||+|.++..+++.    +     .+++.||+|+.+.+.-++++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~----~-----~~~~~~D~~~~~~~~~~~~~   74 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN----G-----TRVSGIEAFPEAAEQAKEKL   74 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT----T-----CEEEEEESSHHHHHHHHTTS
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc----C-----CeEEEEeCCHHHHHHHHHhC
Confidence            3469999999999998876542    2     47999999999988777655

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.15  E-value=0.049  Score=48.09  Aligned_cols=46  Identities=9%  Similarity=0.023  Sum_probs=37.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|..+..+++.+   |.   ..+++.||+||.+.+.-++++..
T Consensus        72 ~~VLeiG~G~G~~~~~la~~~---~~---~~~v~~iD~~~~~~~~a~~~~~~  117 (237)
T 3c3y_A           72 KKTIEVGVFTGYSLLLTALSI---PD---DGKITAIDFDREAYEIGLPFIRK  117 (237)
T ss_dssp             CEEEEECCTTSHHHHHHHHHS---CT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHHH
Confidence            489999999999999988764   21   24799999999999988877753

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=95.11  E-value=0.082  Score=48.40  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             CCChhHHHHHHH--HHHHH-HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          134 SPEVSQMFGEMV--GVWAM-CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       134 SpeIs~~FGe~I--a~~~~-~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      .|+....|.+.+  ..... .+.+..+... .+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+.-+++
T Consensus       139 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~~~  209 (334)
T 2ip2_A          139 CPDAGRRFLLAMKASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQA---EPS----ARGVMLDR-EGSLGVARDN  209 (334)
T ss_dssp             CHHHHHHHHHHHGGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHH---CTT----CEEEEEEC-TTCTHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHH---CCC----CEEEEeCc-HHHHHHHHHH
Confidence            455555565554  11111 2233344444 79999999999999988765   343    47999999 8887766666


Q ss_pred             cc
Q 021589          211 LK  212 (310)
Q Consensus       211 L~  212 (310)
                      +.
T Consensus       210 ~~  211 (334)
T 2ip2_A          210 LS  211 (334)
T ss_dssp             TH
T ss_pred             Hh
Confidence            54

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=95.10  E-value=0.026  Score=48.66  Aligned_cols=47  Identities=17%  Similarity=0.102  Sum_probs=35.6

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..-+|+|+|||+|+++..+.+.+.  |    .-+++-||+|+.+.+..+++..
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~~~~~~~  119 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVG--W----EGKIFGIEFSPRVLRELVPIVE  119 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHC--T----TSEEEEEESCHHHHHHHHHHHS
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhC--C----CeEEEEEECCHHHHHHHHHHHh
Confidence            345899999999999998887642  1    1268999999987766665554

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=95.10  E-value=0.03  Score=50.23  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+|+|+|||+|.++..+....   |    ..+++.||++|.+.+.-++++..
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~---~----~~~v~gvDi~~~~~~~a~~n~~~   82 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARL---E----KAEVTLYERSQEMAEFARRSLEL   82 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHC---T----TEEEEEEESSHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCChHhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHHHh
Confidence            34699999999999988776542   3    25799999999999988887653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.09  E-value=0.028  Score=47.26  Aligned_cols=41  Identities=15%  Similarity=0.079  Sum_probs=33.4

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~---------~~~v~~vD~s~~~~~~a~~~~~   72 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL---------GYEVTAVDQSSVGLAKAKQLAQ   72 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT---------TCEEEEECSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHhHHHHHhC---------CCeEEEEECCHHHHHHHHHHHH
Confidence            9999999999998766542         1379999999999887777664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=95.08  E-value=0.04  Score=47.36  Aligned_cols=41  Identities=17%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.          .+++.||+|+.+.+.-++++.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~----------~~v~~vD~s~~~~~~a~~~~~   75 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLADH----------YEVTGVDLSEEMLEIAQEKAM   75 (243)
T ss_dssp             CEEEEESCTTCHHHHHHTTT----------SEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHhhC----------CeEEEEECCHHHHHHHHHhhh
Confidence            59999999999988766432          379999999999887777654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=95.07  E-value=0.037  Score=51.39  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|-++++...+.     ..+.+.+|+|+|||+|.++..+++..   +    ..+++.||++|.+.+.-++++.
T Consensus        61 ~~Y~e~l~~~~l~-----~~~~~~~VLdiG~G~G~~~~~l~~~~---~----~~~v~~vDid~~~i~~ar~~~~  122 (314)
T 1uir_A           61 YIYHETLVHPAML-----THPEPKRVLIVGGGEGATLREVLKHP---T----VEKAVMVDIDGELVEVAKRHMP  122 (314)
T ss_dssp             HHHHHHHHHHHHH-----HSSCCCEEEEEECTTSHHHHHHTTST---T----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHHHh-----cCCCCCeEEEEcCCcCHHHHHHHhcC---C----CCEEEEEECCHHHHHHHHHHhH
Confidence            3566776643211     12344699999999999998876531   2    2479999999999998887764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=95.06  E-value=0.038  Score=50.50  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=39.0

Q ss_pred             CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       158 ~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+.+.+|+|+|||+|.++..+++.   .|    ..+++.||++|.+.+.-++.+..
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKY---KS----VENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHhHH
Confidence            345569999999999999888643   12    24799999999999988888754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.06  E-value=0.049  Score=46.64  Aligned_cols=46  Identities=7%  Similarity=0.033  Sum_probs=36.6

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|.++..+++.+   |   ...+++.||+|+.+.+.-++++..
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~~~~~~~~a~~~~~~  111 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLAL---P---KDGTLITCDVDEKSTALAKEYWEK  111 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTC---C---TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHhC---C---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            489999999999998886543   2   135899999999998887777643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.05  E-value=0.035  Score=51.90  Aligned_cols=62  Identities=16%  Similarity=0.347  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|-|+++...+  . .  .+.+.+|+|+|+|+|.++..+++.   .|    ..+++.||+||.+.+.-++++..
T Consensus        93 ~Y~e~l~~l~l--~-~--~~~~~~VLdIG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A           93 SYQEMLAHLPM--F-A--HPDPKRVLIIGGGDGGILREVLKH---ES----VEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             HHHHHHHHHHH--H-H--SSSCCEEEEESCTTSHHHHHHTTC---TT----CCEEEEECSCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHH--h-h--CCCCCEEEEEcCCcCHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            45666654321  1 1  233469999999999999888653   12    24799999999999988888753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=94.99  E-value=0.039  Score=51.23  Aligned_cols=63  Identities=14%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -..|-++++...     ....+.+.+|+|+|||+|.++..+++.   .+    ..+++.||++|.+.+.-++++.
T Consensus        78 e~~y~e~l~~~~-----l~~~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDid~~~i~~ar~~~~  140 (304)
T 2o07_A           78 EFSYQEMIANLP-----LCSHPNPRKVLIIGGGDGGVLREVVKH---PS----VESVVQCEIDEDVIQVSKKFLP  140 (304)
T ss_dssp             HHHHHHHHHHHH-----HTTSSSCCEEEEEECTTSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             chHHHHHHHHHH-----HhhCCCCCEEEEECCCchHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHhH
Confidence            456667765421     122344569999999999999887653   12    2479999999999998888764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=94.97  E-value=0.078  Score=45.49  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+...  +    ..+++.||+|+.+.+.-++++.
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~a~~~~~  123 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVG--C----TGKVIGIDHIKELVDDSVNNVR  123 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHC--T----TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhC--C----CcEEEEEeCCHHHHHHHHHHHH
Confidence            35999999999999998876542  1    1379999999999887777664

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.97  E-value=0.032  Score=50.33  Aligned_cols=43  Identities=21%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++..+++.         ..+++-||+|+.+.+.-++++..
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~---------~~~v~gvD~s~~~~~~a~~~~~~  126 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL---------GWEVTALELSTSVLAAFRKRLAE  126 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT---------TCCEEEEESCHHHHHHHHHHHHT
T ss_pred             CcEEEEeccCCHHHHHHHHc---------CCeEEEEECCHHHHHHHHHHHhh
Confidence            39999999999998887653         13699999999999887777653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=94.95  E-value=0.061  Score=48.12  Aligned_cols=51  Identities=24%  Similarity=0.327  Sum_probs=39.1

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++.+.  |    ..+++.||+||...+.-++++.
T Consensus       108 ~~~~~~~~VLDiG~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~a~~~~~  158 (277)
T 1o54_A          108 LDVKEGDRIIDTGVGSGAMCAVLARAVG--S----SGKVFAYEKREEFAKLAESNLT  158 (277)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHTT--T----TCEEEEECCCHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhC--C----CcEEEEEECCHHHHHHHHHHHH
Confidence            3433446999999999999998877631  2    2479999999999887777664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.95  E-value=0.054  Score=48.32  Aligned_cols=45  Identities=16%  Similarity=0.076  Sum_probs=37.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|..+..+++.+   |.   ..+++.||+|+.+.+.-++++.
T Consensus        81 ~~VLeiG~G~G~~~~~la~~~---~~---~~~v~~iD~s~~~~~~a~~~~~  125 (247)
T 1sui_A           81 KNTMEIGVYTGYSLLATALAI---PE---DGKILAMDINKENYELGLPVIK  125 (247)
T ss_dssp             CEEEEECCGGGHHHHHHHHHS---CT---TCEEEEEESCCHHHHHHHHHHH
T ss_pred             CEEEEeCCCcCHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999999888764   21   2479999999999988887764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=94.94  E-value=0.069  Score=46.21  Aligned_cols=48  Identities=25%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.....+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++.
T Consensus        87 ~~~~~~~~vldiG~G~G~~~~~l~~~---------~~~v~~vD~~~~~~~~a~~~~~  134 (248)
T 2yvl_A           87 LNLNKEKRVLEFGTGSGALLAVLSEV---------AGEVWTFEAVEEFYKTAQKNLK  134 (248)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHH---------SSEEEEECSCHHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEeCCCccHHHHHHHHh---------CCEEEEEecCHHHHHHHHHHHH
Confidence            34333459999999999999988775         1379999999999887777654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.92  E-value=0.057  Score=46.28  Aligned_cols=45  Identities=22%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.+   |   ...+++.||+||.+.+.-++++.
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~~~~~~~~a~~~~~  104 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLARGL---S---SGGRVVTLEASEKHADIARSNIE  104 (223)
T ss_dssp             SEEEEECCTTSHHHHHHHTTC---C---SSCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            499999999999998876543   2   12489999999999887777664

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.91  E-value=0.071  Score=46.87  Aligned_cols=48  Identities=21%  Similarity=0.140  Sum_probs=37.1

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++.++ .+    ..+++-||+|+.+.+.-++++.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~-~~----~~~v~gvDis~~~l~~A~~~~~   98 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHR-RS----LRQVIASDVDPAPLELAAKNLA   98 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTG-GG----EEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhc-cC----CCeEEEEECCHHHHHHHHHHHH
Confidence            457999999999999988876531 12    2479999999999887776654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=94.88  E-value=0.047  Score=48.35  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      +.+...+|+|+|||+|.++..+.+     +    ..+++-||+||.+.+.
T Consensus        31 ~~~~~~~vLDiGcG~G~~~~~l~~-----~----~~~v~gvD~s~~~~~~   71 (261)
T 3ege_A           31 NLPKGSVIADIGAGTGGYSVALAN-----Q----GLFVYAVEPSIVMRQQ   71 (261)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHT-----T----TCEEEEECSCHHHHHS
T ss_pred             CCCCCCEEEEEcCcccHHHHHHHh-----C----CCEEEEEeCCHHHHHH
Confidence            344456999999999999988864     2    1479999999977653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=94.86  E-value=0.026  Score=50.60  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=36.1

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+...   +|+    .+++.||+|+.+.+.-++++.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~---~~~----~~v~~vD~s~~~~~~a~~~~~  125 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIV---RPE----LELVLVDATRKKVAFVERAIE  125 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHH---CTT----CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHHHHH
Confidence            4469999999999988776543   232    579999999999887777654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=94.82  E-value=0.037  Score=46.16  Aligned_cols=35  Identities=11%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      -+|+|+|||+|.++..+.+..          +++-||+|+.+.+.
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~----------~v~gvD~s~~~~~~   59 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN----------TVVSTDLNIRALES   59 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS----------EEEEEESCHHHHHT
T ss_pred             CeEEEeccCccHHHHHHHhcC----------cEEEEECCHHHHhc
Confidence            499999999999888764321          79999999999876

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=94.81  E-value=0.034  Score=48.41  Aligned_cols=42  Identities=21%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      +....-+|+|+|||+|.++..+.+..   +    .-+++-||+||.+.+
T Consensus        54 ~~~~g~~VLDlGcGtG~~~~~la~~~---~----~~~V~gvD~s~~~l~   95 (210)
T 1nt2_A           54 KLRGDERVLYLGAASGTTVSHLADIV---D----EGIIYAVEYSAKPFE   95 (210)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHT---T----TSEEEEECCCHHHHH
T ss_pred             CCCCCCEEEEECCcCCHHHHHHHHHc---C----CCEEEEEECCHHHHH
Confidence            33334589999999999988776643   1    136999999997643

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=94.80  E-value=0.049  Score=51.43  Aligned_cols=62  Identities=16%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..|-|+++...     ....+.+.+|+|+|||+|.++..+++.   .|    ..+++.||+||.+.+.-++++.
T Consensus       104 ~~y~e~L~~l~-----l~~~~~~~~VLdIG~G~G~~a~~la~~---~~----~~~V~~VDis~~~l~~Ar~~~~  165 (334)
T 1xj5_A          104 CAYQEMITHLP-----LCSIPNPKKVLVIGGGDGGVLREVARH---AS----IEQIDMCEIDKMVVDVSKQFFP  165 (334)
T ss_dssp             HHHHHHHHHHH-----HTTSSCCCEEEEETCSSSHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             hHHHHHHHHHH-----HhhCCCCCEEEEECCCccHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            45667665432     122344569999999999998887653   22    2479999999999998888774

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.75  E-value=0.051  Score=47.71  Aligned_cols=45  Identities=11%  Similarity=0.092  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..++....   .    .+++.||+||.+.+.-++++.
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~---~----~~v~gvD~s~~~~~~a~~~~~  110 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLN---G----WYFLATEVDDMCFNYAKKNVE  110 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHH---C----CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCChhHHHHHHHHhCC---C----CeEEEEECCHHHHHHHHHHHH
Confidence            45899999999999988876542   1    479999999999988777664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=94.70  E-value=0.039  Score=50.15  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=36.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+.+.+   +    ..+++-||+|+.+.+.-++++..
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~---~----~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKW---G----PSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHT---C----CSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCcEEEeCCCCCHHHHHHHHHc---C----CCEEEEECCCHHHHHHHHHHHHh
Confidence            3599999999999999887653   2    24799999999999888877654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=94.68  E-value=0.048  Score=48.34  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=36.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.+   |   ...+++.||+||.+.+.-++++.
T Consensus        65 ~~VLdiG~G~G~~~~~la~~~---~---~~~~v~~vD~s~~~~~~a~~~~~  109 (248)
T 3tfw_A           65 KRILEIGTLGGYSTIWMAREL---P---ADGQLLTLEADAHHAQVARENLQ  109 (248)
T ss_dssp             SEEEEECCTTSHHHHHHHTTS---C---TTCEEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHHH
Confidence            499999999999998876543   2   12589999999999887777664

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=94.65  E-value=0.049  Score=46.64  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=34.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..++...   .     .+++.||+||.+.+.-++++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~---~-----~~v~gvD~s~~~l~~a~~~~~   97 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQ---A-----KKVTFLELDKTVANQLKKNLQ   97 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTT---C-----SEEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEEcCCccCHHHHHHHHcc---C-----CEEEEEECCHHHHHHHHHHHH
Confidence            489999999999988765431   1     369999999999988777764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=94.65  E-value=0.067  Score=49.89  Aligned_cols=44  Identities=18%  Similarity=0.351  Sum_probs=35.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+++..   |.    .+++.||+|+.+.+.-++++.
T Consensus       198 ~~VLDlGcG~G~~~~~la~~~---~~----~~v~~vD~s~~~l~~a~~~~~  241 (343)
T 2pjd_A          198 GKVLDVGCGAGVLSVAFARHS---PK----IRLTLCDVSAPAVEASRATLA  241 (343)
T ss_dssp             SBCCBTTCTTSHHHHHHHHHC---TT----CBCEEEESBHHHHHHHHHHHH
T ss_pred             CeEEEecCccCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887642   32    379999999998887777764

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=94.63  E-value=0.025  Score=51.55  Aligned_cols=59  Identities=17%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .|-|+++...+  . .  .+.+.+|+|+|||+|.++..+++.    +    ..+++.||++|.+.+.-++.+
T Consensus        60 ~y~e~l~~~~l--~-~--~~~~~~VLdiG~G~G~~~~~l~~~----~----~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           60 SYHEPLVHPAM--L-A--HPKPKRVLVIGGGDGGTVREVLQH----D----VDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             HHHHHHHHHHH--H-H--SSCCCEEEEEECTTSHHHHHHTTS----C----CSEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH--h-h--CCCCCeEEEEcCCcCHHHHHHHhC----C----CCEEEEEECCHHHHHHHHHHH
Confidence            46666653211  1 1  234469999999999999888653    2    247999999999999888877

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=94.57  E-value=0.06  Score=46.14  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..++...   .     -+++.||+||.+.+.-++++.
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~---~-----~~V~~vD~s~~~l~~a~~~~~   98 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRY---A-----AGATLIEMDRAVSQQLIKNLA   98 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTT---C-----SEEEEECSCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCcCHHHHHHHhcC---C-----CEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998766431   1     269999999999988777664

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=94.57  E-value=0.049  Score=47.96  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ....|+|+|||+|.++..+....   |+    .+++-||+|+.+.+.-++++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~---~~----~~v~gvD~s~~~l~~a~~~~~   94 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAF---PE----DLILGMEIRVQVTNYVEDRII   94 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHS---TT----SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC---CC----CCEEEEEcCHHHHHHHHHHHH
Confidence            34589999999999998876643   32    479999999998876665543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=94.55  E-value=0.12  Score=49.64  Aligned_cols=44  Identities=23%  Similarity=0.228  Sum_probs=36.1

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++..+++.         ..+++.||+|+.+.+.-++++..
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~---------g~~V~gvDis~~al~~A~~n~~~  277 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM---------GAEVVGVEDDLASVLSLQKGLEA  277 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT---------TCEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeCCHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHHH
Confidence            359999999999999888653         13799999999999888877653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=94.51  E-value=0.046  Score=47.44  Aligned_cols=43  Identities=14%  Similarity=0.143  Sum_probs=35.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+..   +      +++-||+||.+.+.-++++.
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~---~------~v~gvD~s~~~~~~a~~~~~   99 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFF---P------RVIGLDVSKSALEIAAKENT   99 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHS---S------CEEEEESCHHHHHHHHHHSC
T ss_pred             CCeEEEEcCCCCHHHHHHHHhC---C------CEEEEECCHHHHHHHHHhCc
Confidence            3589999999999999887642   2      58999999999888777663

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=94.51  E-value=0.049  Score=47.73  Aligned_cols=45  Identities=16%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+...   .|.    .+++.||+|+.+.+.-+++..
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~---~~~----~~v~~vD~s~~~~~~a~~~~~  115 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKIC---FPH----LHVTIVDSLNKRITFLEKLSE  115 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHH---CTT----CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCHHHHHHHHh---CCC----CEEEEEeCCHHHHHHHHHHHH
Confidence            459999999999988877643   222    479999999988877666543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=94.51  E-value=0.046  Score=51.09  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..|-|+++...+.   .  .+.+.+|+|+|||+|.++..+++.   .|    ..+++.||+||.+.+.-++++..
T Consensus       100 ~~y~e~l~~~~l~---~--~~~~~~VLdiG~G~G~~~~~l~~~---~~----~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A          100 FAYHEMMTHVPMT---V--SKEPKNVLVVGGGDGGIIRELCKY---KS----VENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             HHHHHHHHHHHHH---H--SSSCCEEEEEECTTCHHHHHHTTC---TT----CCEEEEEESCHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHh---c--CCCCCEEEEEcCCccHHHHHHHHc---CC----CCEEEEEECCHHHHHHHHHHHHh
Confidence            3566776543221   1  234469999999999999887643   12    24799999999999988887754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.47  E-value=0.11  Score=52.01  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .++.|  ++|+++|||.|.|+..+.+.-         -+++-||.|+.+.+.-+...
T Consensus        63 ~~~~~--~~vLDvGCG~G~~~~~la~~g---------a~V~giD~~~~~i~~a~~~a  108 (569)
T 4azs_A           63 ALGRP--LNVLDLGCAQGFFSLSLASKG---------ATIVGIDFQQENINVCRALA  108 (569)
T ss_dssp             HHTSC--CEEEEETCTTSHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCC--CeEEEECCCCcHHHHHHHhCC---------CEEEEECCCHHHHHHHHHHH
Confidence            35554  799999999999998876531         26899999999887666544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=94.44  E-value=0.07  Score=46.74  Aligned_cols=45  Identities=13%  Similarity=0.134  Sum_probs=36.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|..+..+++.+   |.   ..+++.||+||.+.+.-++++.
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~---~~---~~~v~~iD~~~~~~~~a~~~~~  118 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQL---PP---DGQIIACDQDPNATAIAKKYWQ  118 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTS---CT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCHHHHHHHHhC---CC---CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887643   21   2479999999999888777664

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=94.41  E-value=0.12  Score=47.15  Aligned_cols=44  Identities=11%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|.++..+...    |.    .+++.||+|+...+.-++++..
T Consensus       125 ~~vLDlG~GsG~~~~~la~~----~~----~~v~~vDis~~al~~A~~n~~~  168 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKF----SD----AIVFATDVSSKAVEIARKNAER  168 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHH----SS----CEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCchhHHHHHHHHC----CC----CEEEEEECCHHHHHHHHHHHHH
Confidence            48999999999999888764    22    4799999999998887776643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.39  E-value=0.1  Score=47.39  Aligned_cols=45  Identities=13%  Similarity=0.269  Sum_probs=34.8

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++.    +    ..+++.||+|+.+.+.-++++.
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~----~----~~~v~gvD~s~~~l~~a~~~~~   78 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG----R----INKLVCTDIADVSVKQCQQRYE   78 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHhc----C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            3459999999999998877652    1    1379999999999887777654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=94.37  E-value=0.036  Score=49.30  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ...|+|||||+|.++..+.+   .+|+    ..++-||+|+.+.+.-++++
T Consensus        47 ~~~vLDiGcG~G~~~~~la~---~~p~----~~v~GiDis~~~l~~A~~~~   90 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVELSP---LFPD----TLILGLEIRVKVSDYVQDRI   90 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHGG---GSTT----SEEEEEESCHHHHHHHHHHH
T ss_pred             CCeEEEEccCCcHHHHHHHH---HCCC----CeEEEEECCHHHHHHHHHHH
Confidence            35899999999998887643   2343    47999999999987655543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=94.36  E-value=0.099  Score=41.77  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      ..+|+|+|||+|.++..+++.+.  |    ..+++.||+|+ +.
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~--~----~~~v~~~D~~~-~~   59 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIG--G----KGRIIACDLLP-MD   59 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC--T----TCEEEEEESSC-CC
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhC--C----CCeEEEEECcc-cc
Confidence            35999999999999998887641  1    13799999999 64

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=94.35  E-value=0.053  Score=47.08  Aligned_cols=43  Identities=16%  Similarity=0.120  Sum_probs=31.8

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      +....-+|+|+|||+|+++..+++...  |.    .+++-||+||.+.+
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g--~~----~~v~gvD~s~~~i~  116 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVG--PD----GLVYAVEFSHRSGR  116 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHC--TT----CEEEEECCCHHHHH
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhC--CC----cEEEEEECCHHHHH
Confidence            333345899999999999999887641  11    36899999987543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=94.34  E-value=0.032  Score=50.77  Aligned_cols=45  Identities=11%  Similarity=0.053  Sum_probs=36.4

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.+.+|+|+|+|+|.++..+++.    +     .+++.||++|.+.+.-++.+.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~----~-----~~v~~veid~~~i~~ar~~~~  115 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY----D-----THIDFVQADEKILDSFISFFP  115 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS----S-----CEEEEECSCHHHHGGGTTTST
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC----C-----CEEEEEECCHHHHHHHHHHHH
Confidence            44569999999999998887653    2     279999999999987777664

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=94.24  E-value=0.13  Score=48.69  Aligned_cols=45  Identities=18%  Similarity=0.014  Sum_probs=35.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -.|+|+|||+|+++..+....   +    ..+++-+|+|+.+.+.-++++..
T Consensus       219 ~~vLD~gCGsG~~~i~~a~~~---~----~~~v~g~Dis~~~l~~A~~n~~~  263 (373)
T 3tm4_A          219 GSVLDPMCGSGTILIELALRR---Y----SGEIIGIEKYRKHLIGAEMNALA  263 (373)
T ss_dssp             CCEEETTCTTCHHHHHHHHTT---C----CSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEccCcCcHHHHHHHHhC---C----CCeEEEEeCCHHHHHHHHHHHHH
Confidence            589999999999988775532   1    12699999999999888877653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=94.21  E-value=0.094  Score=43.92  Aligned_cols=49  Identities=14%  Similarity=0.047  Sum_probs=33.6

Q ss_pred             HHHHHHHcCC-CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          149 AMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       149 ~~~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      +.++.++.+. ....+|+|+|||+|.++..+++..   |.  ...+++-||+||.
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~---~~--~~~~v~gvD~s~~   59 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERT---KN--YKNKIIGIDKKIM   59 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHT---TT--SCEEEEEEESSCC
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHc---CC--CCceEEEEeCCcc
Confidence            3444444442 234689999999999999887654   20  0247999999994

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=94.15  E-value=0.059  Score=48.83  Aligned_cols=59  Identities=12%  Similarity=0.085  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEec-ChhhHHHHHHhc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC-SPTLQKLQHHNL  211 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~-SP~Lr~~Q~e~L  211 (310)
                      ++.++.++....   ......+|+|+|||+|.++..+.+.    .    ..+++.||+ ||.+.+.-++++
T Consensus        64 ~~~l~~~l~~~~---~~~~~~~vLDlG~G~G~~~~~~a~~----~----~~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           64 ARALADTLCWQP---ELIAGKTVCELGAGAGLVSIVAFLA----G----ADQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             HHHHHHHHHHCG---GGTTTCEEEETTCTTSHHHHHHHHT----T----CSEEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc---hhcCCCeEEEecccccHHHHHHHHc----C----CCEEEEEeCCCHHHHHHHHHHH
Confidence            566777765432   1112348999999999998755432    1    137999999 898887766665

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=94.13  E-value=0.07  Score=53.58  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=51.2

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcC-cCc----------cccceEE
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF----------TESLHIH  195 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~-p~~----------~~~l~y~  195 (310)
                      ..|.|||+.+|..+..+++           ......+|++.+||+|.|...+.+++... ++.          .....++
T Consensus       147 ~~G~fyTP~~iv~~mv~~l-----------~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~  215 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  215 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             cCCeeeCCHHHHHHHHHHh-----------ccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEE
Confidence            4699999999876644433           11223589999999999999999887532 111          0124799


Q ss_pred             EEecChhhHHHHHHhc
Q 021589          196 LVECSPTLQKLQHHNL  211 (310)
Q Consensus       196 iVE~SP~Lr~~Q~e~L  211 (310)
                      -+|++|.+.+.-+.++
T Consensus       216 GiEid~~~~~lA~~nl  231 (541)
T 2ar0_A          216 GLELVPGTRRLALMNC  231 (541)
T ss_dssp             EEESCHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHH
Confidence            9999999988777655

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=94.04  E-value=0.098  Score=46.88  Aligned_cols=51  Identities=22%  Similarity=0.282  Sum_probs=39.3

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.....+|+|+|||+|.++..+++.+.  |    ..+++.||+|+.+.+.-++++..
T Consensus       107 ~~~~~~~VLD~G~G~G~~~~~la~~~~--~----~~~v~~vD~s~~~~~~a~~~~~~  157 (275)
T 1yb2_A          107 GLRPGMDILEVGVGSGNMSSYILYALN--G----KGTLTVVERDEDNLKKAMDNLSE  157 (275)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHT--T----SSEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCcCEEEEecCCCCHHHHHHHHHcC--C----CCEEEEEECCHHHHHHHHHHHHh
Confidence            433446999999999999998887641  2    24799999999998887777643

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=94.00  E-value=0.25  Score=51.02  Aligned_cols=66  Identities=21%  Similarity=0.272  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCC-CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          139 QMFGEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      ..|-++|...+.+...+... .....|+.+|||||-|..-.+++.+...   .+++++-||.||. +..-+
T Consensus       335 ~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~---~~vkVyAVEknp~-A~~a~  401 (637)
T 4gqb_A          335 SQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQAD---RRIKLYAVEKNPN-AVVTL  401 (637)
T ss_dssp             HHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTT---CEEEEEEEESCHH-HHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcC---CCcEEEEEECCHH-HHHHH
Confidence            56788888877554322222 2345789999999999888888875421   2468899999984 44333

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=93.92  E-value=0.14  Score=45.64  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+.+.   .     . +++.||+||.+.+.-++++.
T Consensus       122 ~~VLDiGcG~G~l~~~la~~---g-----~-~v~gvDi~~~~v~~a~~n~~  163 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKL---G-----G-KALGVDIDPMVLPQAEANAK  163 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHT---T-----C-EEEEEESCGGGHHHHHHHHH
T ss_pred             CEEEEecCCCcHHHHHHHHh---C-----C-eEEEEECCHHHHHHHHHHHH
Confidence            59999999999998765442   1     1 79999999999888777664

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=93.92  E-value=0.097  Score=47.65  Aligned_cols=71  Identities=11%  Similarity=0.185  Sum_probs=45.3

Q ss_pred             CCChhHHHHHHHHHH----HHHHHHHcCC--CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          134 SPEVSQMFGEMVGVW----AMCLWEQMGQ--PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~----~~~~w~~~g~--p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .++....|...+..+    +..+.+.+..  ....+|+|+|||+|.++..+++..   |.    .+++.+|+| .+.+.-
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~---p~----~~~~~~D~~-~~~~~a  204 (335)
T 2r3s_A          133 EHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN---PN----AEIFGVDWA-SVLEVA  204 (335)
T ss_dssp             TCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC---TT----CEEEEEECH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC---CC----CeEEEEecH-HHHHHH
Confidence            355555555533221    1123333443  455799999999999999887653   33    589999999 776665


Q ss_pred             HHhcc
Q 021589          208 HHNLK  212 (310)
Q Consensus       208 ~e~L~  212 (310)
                      ++++.
T Consensus       205 ~~~~~  209 (335)
T 2r3s_A          205 KENAR  209 (335)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65553

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=93.90  E-value=0.25  Score=52.59  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=49.6

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ..|.|+|+++|..+..++.. .+   . ....+...+|+|.|||+|.|+..+.+.+...    ...+++-+|++|.+.+.
T Consensus       293 k~GqFYTP~eLA~lMVeLA~-il---l-~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei----~~~~IyGvEIDp~Al~L  363 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQ-HI---L-GRPLTEDEVISDPAAGSGNLLATVSAGFNNV----MPRQIWANDIETLFLEL  363 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHH-HH---H-CSCCCTTCEEEETTCTTSHHHHHHHHTSTTC----CGGGEEEECSCGGGHHH
T ss_pred             cCceEcCCHHHHHHHHHHHh-hh---c-cccCCCCCEEEECCCCccHHHHHHHHHhccc----CCCeEEEEECCHHHHHH
Confidence            56999999998776555421 11   1 1112234699999999999988877654211    23578999999998776


Q ss_pred             H
Q 021589          207 Q  207 (310)
Q Consensus       207 Q  207 (310)
                      -
T Consensus       364 A  364 (878)
T 3s1s_A          364 L  364 (878)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=93.85  E-value=0.08  Score=47.63  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=32.5

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      ++....-+|+++|||+|.++..+.+....      .-+++-||+||.+.
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~------~G~V~avD~s~~~l  114 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIEL------NGKAYGVEFSPRVV  114 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTT------TSEEEEEECCHHHH
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCC------CCEEEEEECcHHHH
Confidence            33334469999999999999988776532      13799999999764

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=93.84  E-value=0.15  Score=47.01  Aligned_cols=47  Identities=19%  Similarity=0.228  Sum_probs=37.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+++...  |    ..+++-||+||.+.+.-++++.
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g--~----~~~v~~vD~~~~~~~~a~~~~~  151 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVG--S----QGRVISFEVRKDHHDLAKKNYK  151 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHC--T----TCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhC--C----CceEEEEeCCHHHHHHHHHHHH
Confidence            345999999999999999887641  1    1379999999999887777664

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=93.80  E-value=0.063  Score=47.66  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=34.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|.++..+...   .+     .+++.||++|.+.+.-++++.
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~---~~-----~~v~gvDi~~~~~~~a~~n~~   93 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTR---TK-----AKIVGVEIQERLADMAKRSVA   93 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTT---CC-----CEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchhHHHHHHHHh---cC-----CcEEEEECCHHHHHHHHHHHH
Confidence            459999999999988766432   12     279999999999887777664

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=93.72  E-value=0.32  Score=44.61  Aligned_cols=118  Identities=7%  Similarity=0.029  Sum_probs=66.8

Q ss_pred             chHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCC---CCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCC
Q 021589           82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQ  158 (310)
Q Consensus        82 ~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~---~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~  158 (310)
                      +...|...|..+++.. |-=+|++|.+....+....-...   .--+|.. .|+-=|+--.++.+.    ++..    . 
T Consensus        36 k~~~~~~Rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lt~~~t-~FfRd~~~f~~l~~~----llp~----~-  104 (274)
T 1af7_A           36 KRDMVYNRLVRRLRAL-GLDDFGRYLSMLEANQNSAEWQAFINALTTNLT-AFFREAHHFPILAEH----ARRR----H-  104 (274)
T ss_dssp             GHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHCTTCTHHHHHHHHHCCCCC-CTTTTTTHHHHHHHH----HHHS----C-
T ss_pred             hHHHHHHHHHHHHHHc-CCCCHHHHHHHHccCCCHHHHHHHHHHHhhcCc-cccCChHHHHHHHHH----ccCC----C-
Confidence            4567788888888876 65589999877765432211111   1112333 233333332333322    1111    1 


Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhc-CcCccccceEEEEecChhhHHHHHHhc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                       .+.+|+++|||+|.-+..|.-.+.+ .+......+++-+|+|+.+-+.-++..
T Consensus       105 -~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          105 -GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             -SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             -CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence             3589999999999954443332321 121111348999999999988777654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=93.68  E-value=0.039  Score=49.25  Aligned_cols=60  Identities=15%  Similarity=0.174  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHc---CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          145 VGVWAMCLWEQM---GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       145 Ia~~~~~~w~~~---g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +..|+.+.+.++   +.....+|+|+|||+|.++.-.+   +  +.+   -+++.||+||.+.+.-++++.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~---~--~~~---~~v~g~D~s~~~l~~a~~~~~   99 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA---C--DSF---QDITLSDFTDRNREELEKWLK   99 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG---G--GTE---EEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHH---H--hhh---cceeeccccHHHHHHHHHHHh
Confidence            344555544433   33345689999999997654211   1  111   269999999999997777664

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=93.64  E-value=0.13  Score=48.29  Aligned_cols=65  Identities=14%  Similarity=0.162  Sum_probs=44.7

Q ss_pred             cCCChhHHHHHHHHHHHH----HHHHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          133 TSPEVSQMFGEMVGVWAM----CLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       133 TSpeIs~~FGe~Ia~~~~----~~w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      ..|+....|.+.++.+..    .+.+... .+...+|+|+|||+|.++..+++..   |+    ++++.+|+ |.+.+
T Consensus       177 ~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~---~~----~~~~~~D~-~~~~~  246 (372)
T 1fp1_D          177 KDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY---PL----IKGINFDL-PQVIE  246 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC---TT----CEEEEEEC-HHHHT
T ss_pred             hCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHC---CC----CeEEEeCh-HHHHH
Confidence            457777778777655432    2333443 4455799999999999999887653   43    57899999 76553

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=93.61  E-value=0.11  Score=48.72  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+++.    +    ..+++.||+|+ +.+.-++++.
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~----g----~~~V~~vD~s~-~~~~a~~~~~   93 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA----G----ARKIYAVEAST-MAQHAEVLVK   93 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT----T----CSEEEEEECST-HHHHHHHHHH
T ss_pred             cCEEEEcCCCccHHHHHHHhC----C----CCEEEEECCHH-HHHHHHHHHH
Confidence            359999999999998876542    1    13799999997 5565555553

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=93.58  E-value=0.24  Score=46.43  Aligned_cols=45  Identities=13%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..-+|+|+|||+|.++..+++.   +|.    ++++.+|. |.+.+.-++++.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~~a~~~~~  223 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQY---NKE----VEVTIVDL-PQQLEMMRKQTA  223 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHH---STT----CEEEEEEC-HHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHh---CCC----CEEEEEeC-HHHHHHHHHHHH
Confidence            3459999999999999998875   343    48999999 888777777664

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=93.45  E-value=0.063  Score=46.69  Aligned_cols=49  Identities=14%  Similarity=-0.002  Sum_probs=35.4

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.....+|+|+|||+|.++..+...   .+     .+++.||+|+.+.+.-++++..
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~-----~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE---SF-----TEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG---TE-----EEEEEEESCHHHHHHHHHHHTT
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc---cc-----CeEEEecCCHHHHHHHHHHHhc
Confidence            3334569999999999877654321   11     3799999999998877776643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=93.44  E-value=0.056  Score=48.05  Aligned_cols=44  Identities=14%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      -+|+|+|||+|..+..+++.+   |   ...+++.||+||.+.+.-++++
T Consensus        62 ~~VLDiG~G~G~~t~~la~~~---~---~~~~v~~iD~~~~~~~~a~~~~  105 (242)
T 3r3h_A           62 KKVLELGTFTGYSALAMSLAL---P---DDGQVITCDINEGWTKHAHPYW  105 (242)
T ss_dssp             SEEEEEESCCSHHHHHHHHTS---C---TTCEEEEEECCCSSCCCSHHHH
T ss_pred             CEEEEeeCCcCHHHHHHHHhC---C---CCCEEEEEECCHHHHHHHHHHH
Confidence            489999999999999887654   2   1247999999998766555444

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=93.37  E-value=0.1  Score=49.17  Aligned_cols=64  Identities=13%  Similarity=0.267  Sum_probs=43.6

Q ss_pred             cCCChhHHHHHHHHHHHHHH----HHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          133 TSPEVSQMFGEMVGVWAMCL----WEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       133 TSpeIs~~FGe~Ia~~~~~~----w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      +-|+....|.+..+.+-...    ..... .+...+|+|+|||+|.++..+++.   +|.    ++++.+|. |.+.
T Consensus       171 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~  239 (368)
T 3reo_A          171 TDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAK---YPS----INAINFDL-PHVI  239 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHH
T ss_pred             hCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHh---CCC----CEEEEEeh-HHHH
Confidence            34667777877766553222    22222 344579999999999999998875   343    57899999 6554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=93.28  E-value=0.089  Score=46.79  Aligned_cols=41  Identities=10%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      ...+|+|+|||+|.++..+++.    .    ..+++-||+|+.+.+.-+
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~----g----~~~V~gvDis~~ml~~a~   77 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN----G----AKLVYALDVGTNQLAWKI   77 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----T----CSEEEEECSSCCCCCHHH
T ss_pred             CCCEEEEEccCCCHHHHHHHhc----C----CCEEEEEcCCHHHHHHHH
Confidence            3458999999999999887653    1    127999999999866533

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=93.26  E-value=0.06  Score=50.05  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             cCCChhHHHHHHHHHHHHHH---HHHc--CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          133 TSPEVSQMFGEMVGVWAMCL---WEQM--GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       133 TSpeIs~~FGe~Ia~~~~~~---w~~~--g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      ..|+....|.+.++.+....   ....  +.+...+|+|+|||+|.++..+++.   +|.    ++++.+|+ |.+.+
T Consensus       156 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~~  225 (352)
T 1fp2_A          156 KNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICET---FPK----LKCIVFDR-PQVVE  225 (352)
T ss_dssp             HCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHHT
T ss_pred             hChHHHHHHHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHH---CCC----CeEEEeeC-HHHHh
Confidence            34566667776655433221   2222  2223469999999999999988764   343    47999999 87654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=93.23  E-value=0.04  Score=48.79  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=42.6

Q ss_pred             CeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          130 DFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       130 DFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|+|.+.+....-           +.++....-+|+|+|||+|.++..+++..         .+++.||+|+.+.+.-++
T Consensus        10 ~fl~~~~~~~~i~-----------~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---------~~v~~id~~~~~~~~a~~   69 (245)
T 1yub_A           10 NFLTSEKVLNQII-----------KQLNLKETDTVYEIGTGKGHLTTKLAKIS---------KQVTSIELDSHLFNLSSE   69 (245)
T ss_dssp             CBCCCTTTHHHHH-----------HHCCCCSSEEEEECSCCCSSCSHHHHHHS---------SEEEESSSSCSSSSSSSC
T ss_pred             CCCCCHHHHHHHH-----------HhcCCCCCCEEEEEeCCCCHHHHHHHHhC---------CeEEEEECCHHHHHHHHH
Confidence            3888877643322           22343344689999999999998887642         369999999988754444


Q ss_pred             hc
Q 021589          210 NL  211 (310)
Q Consensus       210 ~L  211 (310)
                      ++
T Consensus        70 ~~   71 (245)
T 1yub_A           70 KL   71 (245)
T ss_dssp             TT
T ss_pred             Hh
Confidence            33

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.17  E-value=0.25  Score=46.42  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=38.6

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+....-+|+|+|||+|.++.-++...   +    ..+++-||+||.+.+.-++++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~---~----ga~V~gIDis~~~l~~Ar~~~~  167 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHV---Y----GMRVNVVEIEPDIAELSRKVIE  167 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHT---T----CCEEEEEESSHHHHHHHHHHHH
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHc---c----CCEEEEEECCHHHHHHHHHHHH
Confidence            3455556799999999998887666432   2    2479999999999988777664

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=93.08  E-value=0.056  Score=48.92  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      .-+|+|+|||+|.++..+.+..         -+++-||+|+.+.+
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~---------~~v~gvD~s~~ml~   75 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF---------ERVHAVDPGEAQIR   75 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC---------SEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC---------CEEEEEeCcHHhhh
Confidence            3589999999999988765421         26899999998875

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=93.08  E-value=0.14  Score=47.98  Aligned_cols=44  Identities=14%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++..+.+.    +    ..+++.||+|+ +.+..++++.
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~----g----~~~v~gvD~s~-~~~~a~~~~~  107 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA----G----AKKVLGVDQSE-ILYQAMDIIR  107 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT----T----CSEEEEEESST-HHHHHHHHHH
T ss_pred             CCCEEEEeeccCcHHHHHHHHc----C----CCEEEEEChHH-HHHHHHHHHH
Confidence            3458999999999998766543    1    13799999998 6665555553

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=92.89  E-value=0.25  Score=45.51  Aligned_cols=45  Identities=7%  Similarity=0.059  Sum_probs=32.7

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|..+...++   ..     .-+++-||+|+.+.+.-+++..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~---~~-----~~~v~GiD~S~~~l~~A~~~~~   92 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFY---GE-----IALLVATDPDADAIARGNERYN   92 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHH---TT-----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHh---cC-----CCeEEEEECCHHHHHHHHHHHH
Confidence            346899999999975544432   11     1369999999999887777654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=92.69  E-value=0.26  Score=43.47  Aligned_cols=41  Identities=15%  Similarity=0.045  Sum_probs=31.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      -+|+|+|||+|.++.-+.+.++..   ....+++-||+||.+.+
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~---~~~~~V~gvD~s~~~l~  123 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIM---GIDCQVIGIDRDLSRCQ  123 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHT---TCCCEEEEEESCCTTCC
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhc---CCCCEEEEEeCChHHHH
Confidence            489999999999999887764321   12247999999998754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=92.64  E-value=0.32  Score=43.62  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=35.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+++|||+|.++..+...   .|    ..+++.||++|...+.-++++..
T Consensus        17 ~~VlDIGtGsG~l~i~la~~---~~----~~~V~avDi~~~al~~A~~N~~~   61 (225)
T 3kr9_A           17 AILLDVGSDHAYLPIELVER---GQ----IKSAIAGEVVEGPYQSAVKNVEA   61 (225)
T ss_dssp             EEEEEETCSTTHHHHHHHHT---TS----EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHHH
Confidence            58999999999999877553   22    13789999999998877776653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=92.43  E-value=0.22  Score=46.86  Aligned_cols=63  Identities=19%  Similarity=0.288  Sum_probs=42.0

Q ss_pred             CCChhHHHHHHHHHHHHH----HHHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          134 SPEVSQMFGEMVGVWAMC----LWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~~~----~w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      -|+....|....+.+-..    +..... .....+|+|+|||+|.++..+++.   +|+    ++++.+|. |.+.
T Consensus       170 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~  237 (364)
T 3p9c_A          170 DPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAH---YPT----IKGVNFDL-PHVI  237 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHH
T ss_pred             CHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHH---CCC----CeEEEecC-HHHH
Confidence            356666777666544222    223333 445579999999999999999875   343    47899999 6543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=92.37  E-value=0.4  Score=43.09  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=48.5

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|-|++-.+.+.+-.+++           +....-+|+|+|||+|.++..+...+..      ..+++-||+|+...+.-
T Consensus        62 ~G~~~~qd~~s~l~~~~l-----------~~~~g~~VLDlgaG~G~~t~~la~~~~~------~~~v~avD~~~~~l~~~  124 (274)
T 3ajd_A           62 FGYYMPQSISSMIPPIVL-----------NPREDDFILDMCAAPGGKTTHLAQLMKN------KGTIVAVEISKTRTKAL  124 (274)
T ss_dssp             TTSEEECCSGGGHHHHHH-----------CCCTTCEEEETTCTTCHHHHHHHHHTTT------CSEEEEEESCHHHHHHH
T ss_pred             CCeEEEeCHHHHHHHHHh-----------CCCCcCEEEEeCCCccHHHHHHHHHcCC------CCEEEEECCCHHHHHHH
Confidence            577877777776544332           2222358999999999999988775421      24799999999988777


Q ss_pred             HHhcc
Q 021589          208 HHNLK  212 (310)
Q Consensus       208 ~e~L~  212 (310)
                      ++++.
T Consensus       125 ~~~~~  129 (274)
T 3ajd_A          125 KSNIN  129 (274)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76664

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=92.35  E-value=0.29  Score=40.57  Aligned_cols=42  Identities=7%  Similarity=0.031  Sum_probs=29.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcC--cCccccceEEEEecChh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKF--KNFTESLHIHLVECSPT  202 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~--p~~~~~l~y~iVE~SP~  202 (310)
                      ..+|+|+|||+|.++..+++.+...  +..-...+++.||+|+.
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            3599999999999999887764210  00001147999999984

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=92.33  E-value=0.093  Score=46.18  Aligned_cols=38  Identities=18%  Similarity=0.179  Sum_probs=28.9

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecC-hhhHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS-PTLQKL  206 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S-P~Lr~~  206 (310)
                      -.|+|+|||+|.++..+.+.   .|.    .+++-||+| +.|.+.
T Consensus        26 ~~vLDiGCG~G~~~~~la~~---~~~----~~v~GvD~s~~~ml~~   64 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAIN---DQN----TFYIGIDPVKENLFDI   64 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHT---CTT----EEEEEECSCCGGGHHH
T ss_pred             CEEEEEeccCcHHHHHHHHh---CCC----CEEEEEeCCHHHHHHH
Confidence            58999999999998877542   232    479999999 777443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=92.21  E-value=0.34  Score=51.95  Aligned_cols=87  Identities=18%  Similarity=0.119  Sum_probs=53.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe-c
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH-A  240 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~-~  240 (310)
                      .+|+|+|||+|.++..+.+.   .+   ...+++-||+|+.+.+.-++++....... .          .....+.+. .
T Consensus       723 ~rVLDVGCGTG~lai~LAr~---g~---p~a~VtGVDIS~emLe~AReRLa~~lnAk-r----------~gl~nVefiqG  785 (950)
T 3htx_A          723 STLVDFGCGSGSLLDSLLDY---PT---SLQTIIGVDISPKGLARAAKMLHVKLNKE-A----------CNVKSATLYDG  785 (950)
T ss_dssp             SEEEEETCSSSHHHHHHTSS---CC---CCCEEEEEESCHHHHHHHHHHHHHHTTTT-C----------SSCSEEEEEES
T ss_pred             CEEEEECCCCCHHHHHHHHh---CC---CCCeEEEEECCHHHHHHHHHHhhhccchh-h----------cCCCceEEEEC
Confidence            59999999999988876532   11   11379999999999988877664311000 0          000134443 2


Q ss_pred             ccccCCC--CCCEEEEEecccccccce
Q 021589          241 ALEQVPS--GFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       241 sleelp~--~~~~vIiANE~fDALPvh  265 (310)
                      ++.+++.  +..-+|++++++.-+|-.
T Consensus       786 Da~dLp~~d~sFDlVV~~eVLeHL~dp  812 (950)
T 3htx_A          786 SILEFDSRLHDVDIGTCLEVIEHMEED  812 (950)
T ss_dssp             CTTSCCTTSCSCCEEEEESCGGGSCHH
T ss_pred             chHhCCcccCCeeEEEEeCchhhCChH
Confidence            2333332  224578889999888843

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=92.12  E-value=0.92  Score=43.59  Aligned_cols=68  Identities=15%  Similarity=0.077  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc-CcCc------------------------------ccc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (310)
                      |.||..++.+   .+......|++.|||+||++......... .|.+                              -..
T Consensus       187 e~lAa~ll~l---~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          187 ETMAAALVLL---TSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             HHHHHHHHHH---SCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHH---hCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            5566555432   34444468999999999998666554332 1211                              012


Q ss_pred             ceEEEEecChhhHHHHHHhccc
Q 021589          192 LHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       192 l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+++-+|+||.+.+.-++++..
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~  285 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVE  285 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHH
Confidence            4699999999999888877653

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=92.04  E-value=0.36  Score=44.89  Aligned_cols=51  Identities=8%  Similarity=0.033  Sum_probs=38.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +....-.|+|+|||+|+++..+.....  |    ..+++-+|+||.+.+.-++++..
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~--~----~~~v~g~Di~~~~i~~a~~n~~~  250 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLG--P----TSPVYAGDLDEKRLGLAREAALA  250 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHC--T----TSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhC--C----CceEEEEECCHHHHHHHHHHHHH
Confidence            333445899999999999888766541  1    14699999999999888877653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=92.04  E-value=0.27  Score=49.23  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcC-cC-----ccccceEEEEec
Q 021589          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KN-----FTESLHIHLVEC  199 (310)
Q Consensus       126 G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~-p~-----~~~~l~y~iVE~  199 (310)
                      |+.|-|||+.+|..+..+++.           ....-+|++-.||+|.|.....+++... ..     ......++-+|+
T Consensus       194 g~~GqfyTP~~Vv~lmv~l~~-----------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~  262 (530)
T 3ufb_A          194 GDSGEFYTPRPVVRFMVEVMD-----------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEA  262 (530)
T ss_dssp             SSCCCCCCCHHHHHHHHHHHC-----------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECC
T ss_pred             CcCceECCcHHHHHHHHHhhc-----------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhc
Confidence            678999999999887766541           1122489999999999999999888642 21     122357999999


Q ss_pred             ChhhHHHHHHhc
Q 021589          200 SPTLQKLQHHNL  211 (310)
Q Consensus       200 SP~Lr~~Q~e~L  211 (310)
                      .+....+-+-.|
T Consensus       263 ~~~~~~la~mNl  274 (530)
T 3ufb_A          263 KSLPYLLVQMNL  274 (530)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            999887666443

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=92.03  E-value=0.17  Score=47.08  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=40.5

Q ss_pred             cCCChhH--HHHHHHHHHHH---HHHHHc--CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          133 TSPEVSQ--MFGEMVGVWAM---CLWEQM--GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       133 TSpeIs~--~FGe~Ia~~~~---~~w~~~--g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      ..|+...  .|.+.++.+..   .+.+..  +.+...+|+|+|||+|.++..+++.   +|.    ++++.+|. |.+.
T Consensus       159 ~~p~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~---~p~----~~~~~~D~-~~~~  229 (358)
T 1zg3_A          159 KDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEI---FPH----LKCTVFDQ-PQVV  229 (358)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHH---CTT----SEEEEEEC-HHHH
T ss_pred             cChhhhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHH---CCC----CeEEEecc-HHHH
Confidence            3466666  77666554321   122222  1122359999999999999998875   343    57899998 5544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=91.96  E-value=0.47  Score=45.42  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc-CcCc------------------------------ccc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (310)
                      |.||..++.   ..+......|++.|||+|+++......... .|.+                              ...
T Consensus       181 e~lAa~ll~---~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  257 (385)
T 3ldu_A          181 ETLAAGLIY---LTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK  257 (385)
T ss_dssp             HHHHHHHHH---TSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHH---hhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence            445555443   234444468999999999998877665432 1211                              012


Q ss_pred             ceEEEEecChhhHHHHHHhcc
Q 021589          192 LHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       192 l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+++-+|++|.+.+.-++++.
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~  278 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAE  278 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHH
Confidence            469999999999988777764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=91.93  E-value=0.24  Score=46.91  Aligned_cols=45  Identities=16%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ....+|+|+|||+|.++..+++.    .    ..+++.||+| .+.+.-++++.
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~----g----~~~V~gvD~s-~~~~~a~~~~~  106 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA----G----ARKVYAVEAT-KMADHARALVK  106 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT----T----CSEEEEEESS-TTHHHHHHHHH
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc----C----CCEEEEEccH-HHHHHHHHHHH
Confidence            34469999999999998877653    1    1379999999 66666666554

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=91.87  E-value=0.24  Score=45.69  Aligned_cols=45  Identities=7%  Similarity=-0.040  Sum_probs=37.0

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.+-+|+++|||.|-|+.-+.      +    ..+|+.+|+++.+.+.-++.+..
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~------~----~~~y~a~DId~~~i~~ar~~~~~  148 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER------G----IASVWGCDIHQGLGDVITPFARE  148 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT------T----CSEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc------c----CCeEEEEeCCHHHHHHHHHHHHh
Confidence            345699999999999998765      2    25899999999999988887643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=91.85  E-value=0.45  Score=42.89  Aligned_cols=45  Identities=16%  Similarity=0.028  Sum_probs=35.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+++|||+|.++..+....   |    ..+++-+|++|...+.-++++..
T Consensus        23 ~~VlDIGtGsG~l~i~la~~~---~----~~~V~AvDi~~~al~~A~~N~~~   67 (230)
T 3lec_A           23 ARLLDVGSDHAYLPIFLLQMG---Y----CDFAIAGEVVNGPYQSALKNVSE   67 (230)
T ss_dssp             EEEEEETCSTTHHHHHHHHTT---C----EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEECCchHHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            689999999999998775531   2    13689999999998887777653

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=91.76  E-value=0.53  Score=45.31  Aligned_cols=41  Identities=17%  Similarity=0.294  Sum_probs=27.9

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .|+++|||+|.|+.-..++        .+-+++-||.|+ +.+.-++.+.
T Consensus        86 ~VLDvG~GtGiLs~~Aa~a--------GA~~V~ave~s~-~~~~a~~~~~  126 (376)
T 4hc4_A           86 TVLDVGAGTGILSIFCAQA--------GARRVYAVEASA-IWQQAREVVR  126 (376)
T ss_dssp             EEEEETCTTSHHHHHHHHT--------TCSEEEEEECST-THHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHh--------CCCEEEEEeChH-HHHHHHHHHH
Confidence            8999999999886433222        123689999998 5555555443

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=91.64  E-value=0.43  Score=43.43  Aligned_cols=46  Identities=7%  Similarity=0.062  Sum_probs=35.9

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-+|+++|||+|.++..+....   |    ..+++.||++|...+.-++++..
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~---~----~~~V~avDi~~~al~~A~~N~~~   67 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQ---T----ASFAIAGEVVDGPFQSAQKQVRS   67 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTT---S----EEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCccHHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHHHHH
Confidence            3589999999999998775431   2    13689999999998887777653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=91.44  E-value=1  Score=43.18  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc-CcCc------------------------------ccc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF------------------------------TES  191 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~------------------------------~~~  191 (310)
                      |.||..++.+   .+....-.|++.+||+||++......... .|.+                              -..
T Consensus       180 e~LAaall~l---~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          180 ENMAAAIILL---SNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             HHHHHHHHHH---TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHH---hCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            5566555432   34434468999999999998766554332 2211                              012


Q ss_pred             ceEEEEecChhhHHHHHHhccc
Q 021589          192 LHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       192 l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+++-+|+|+.+.+.-++++..
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~  278 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNARE  278 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHH
Confidence            4699999999999888877653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=91.43  E-value=0.24  Score=44.25  Aligned_cols=45  Identities=16%  Similarity=0.166  Sum_probs=31.4

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ...+|+|+|||+|.++  ++..  ..+    ..+++-||+|+.+.+.-++++.
T Consensus        71 ~~~~vLDiGcG~G~~~--~l~~--~~~----~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ--LLSA--CSH----FEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGG--GTTG--GGG----CSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHH--HHhh--ccC----CCeEEEeCCCHHHHHHHHHHHh
Confidence            3469999999999932  2211  111    1379999999999987777654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=91.36  E-value=0.49  Score=42.79  Aligned_cols=44  Identities=14%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             ceEEEecCCc---hHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGR---GTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~---GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+   |.++.-+.+   ..|.    .+++-||.||.+.+.-++++.
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~---~~p~----~~v~~vD~sp~~l~~Ar~~~~  125 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQS---VNPD----ARVVYVDIDPMVLTHGRALLA  125 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHH---HCTT----CEEEEEESSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCChHHHHHHH---hCCC----CEEEEEECChHHHHHHHHhcC
Confidence            5999999999   987643322   2343    479999999999888777764

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=91.14  E-value=0.43  Score=44.42  Aligned_cols=45  Identities=13%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -.|+|+|||+|.++..+++.+   |    ..+++-||.||.+.+.-++++..
T Consensus        28 ~~vLD~g~G~G~~s~~la~~~---~----~~~VigvD~d~~al~~A~~~~~~   72 (301)
T 1m6y_A           28 KIILDCTVGEGGHSRAILEHC---P----GCRIIGIDVDSEVLRIAEEKLKE   72 (301)
T ss_dssp             CEEEETTCTTSHHHHHHHHHC---T----TCEEEEEESCHHHHHHHHHHTGG
T ss_pred             CEEEEEeCCcCHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHHh
Confidence            589999999999999998764   2    14799999999999988887754

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=90.71  E-value=0.24  Score=45.94  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.    +    ..+++.||+|+ +.+.-++++.
T Consensus        40 ~~VLDiGcGtG~ls~~la~~----g----~~~v~~vD~s~-~~~~a~~~~~   81 (328)
T 1g6q_1           40 KIVLDVGCGTGILSMFAAKH----G----AKHVIGVDMSS-IIEMAKELVE   81 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHT----C----CSEEEEEESST-HHHHHHHHHH
T ss_pred             CEEEEecCccHHHHHHHHHC----C----CCEEEEEChHH-HHHHHHHHHH
Confidence            48999999999998766542    2    13799999996 5555555553

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=90.62  E-value=0.22  Score=44.98  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=35.6

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..+.+..   +    ..+++.||+||.+.+.-++++.
T Consensus       121 ~~VLDlgcG~G~~s~~la~~~---~----~~~V~~vD~s~~av~~a~~n~~  164 (272)
T 3a27_A          121 EVVVDMFAGIGYFTIPLAKYS---K----PKLVYAIEKNPTAYHYLCENIK  164 (272)
T ss_dssp             CEEEETTCTTTTTHHHHHHHT---C----CSEEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEecCcCCHHHHHHHHhC---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            589999999999998887653   1    2479999999999887777664

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=90.52  E-value=0.64  Score=43.50  Aligned_cols=42  Identities=12%  Similarity=0.033  Sum_probs=33.9

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..++..        .. +++.||+|+.+.+.-++++.
T Consensus       155 ~~VLDlgcGtG~~sl~la~~--------ga-~V~~VD~s~~al~~a~~n~~  196 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAA--------GA-EVTHVDASKKAIGWAKENQV  196 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHT--------TC-EEEEECSCHHHHHHHHHHHH
T ss_pred             CcEEEcccccCHHHHHHHHc--------CC-EEEEEECCHHHHHHHHHHHH
Confidence            48999999999999887652        11 69999999999887776654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=90.25  E-value=0.24  Score=42.33  Aligned_cols=37  Identities=24%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      ..+|+|+|||+|.++..++.            . +.||+|+.+.+.-+++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~------------~-~~vD~s~~~~~~a~~~   84 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKI------------K-IGVEPSERMAEIARKR   84 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTC------------C-EEEESCHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHH------------H-hccCCCHHHHHHHHhc
Confidence            45999999999998876531            1 8899999998776654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=90.22  E-value=0.36  Score=45.17  Aligned_cols=42  Identities=19%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+|+|+|||+|.++..+++.    +    ..+++-||+|+ +.+.-++++.
T Consensus        68 ~~VLDvGcG~G~~~~~la~~----g----~~~v~gvD~s~-~l~~a~~~~~  109 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKA----G----ARKVIGIECSS-ISDYAVKIVK  109 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHT----T----CSEEEEEECST-HHHHHHHHHH
T ss_pred             CEEEEEeccchHHHHHHHHC----C----CCEEEEECcHH-HHHHHHHHHH
Confidence            58999999999998877653    2    24799999997 5555454443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=90.03  E-value=0.23  Score=44.88  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=34.6

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|.++..+.+..   +    . +++-||+||.+.+.-++++.
T Consensus       127 ~~VLDlgcG~G~~~~~la~~~---~----~-~V~~vD~s~~~~~~a~~n~~  169 (278)
T 2frn_A          127 ELVVDMFAGIGHLSLPIAVYG---K----A-KVIAIEKDPYTFKFLVENIH  169 (278)
T ss_dssp             CEEEETTCTTTTTHHHHHHHT---C----C-EEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEecccCCHHHHHHHHhC---C----C-EEEEEECCHHHHHHHHHHHH
Confidence            489999999999998887642   1    1 68999999999887777654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=90.02  E-value=0.39  Score=43.91  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|...+++..   ..+. -.|++++||+|+++...++.-         .+++.||++|.+.+.-++++..
T Consensus       223 ~l~~~~i~~~---~~~~-~~vlD~f~GsGt~~~~a~~~g---------~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          223 ELAERLVRMF---SFVG-DVVLDPFAGTGTTLIAAARWG---------RRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHH---CCTT-CEEEETTCTTTHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---CCCC-CEEEECCCCCCHHHHHHHHcC---------CeEEEEeCCHHHHHHHHHHHHH
Confidence            3444444443   2333 489999999999988765421         3699999999999988888764

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=89.99  E-value=0.66  Score=39.69  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=38.3

Q ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchH-HHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          135 PEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGT-LMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       135 peIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~Gt-La~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      |+-+.| -|.||.|+.+-+     ..+-+|||+|+|+|. .|.-+-+.   .     .+.++.+|++|.-..
T Consensus        16 ~~~~~m-~e~LaeYI~~~~-----~~~~rVlEVG~G~g~~vA~~La~~---~-----g~~V~atDInp~Av~   73 (153)
T 2k4m_A           16 PRGSHM-WNDLAVYIIRCS-----GPGTRVVEVGAGRFLYVSDYIRKH---S-----KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCCHH-HHHHHHHHHHHS-----CSSSEEEEETCTTCCHHHHHHHHH---S-----CCEEEEECSSCSSTT
T ss_pred             cchhhH-HHHHHHHHHhcC-----CCCCcEEEEccCCChHHHHHHHHh---C-----CCeEEEEECCccccc
Confidence            555677 778999986543     223599999999994 66654321   1     146888888886544

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=89.94  E-value=2  Score=40.03  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=43.3

Q ss_pred             CCChhHHHHHHHHHHH----HHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHH
Q 021589          134 SPEVSQMFGEMVGVWA----MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH  209 (310)
Q Consensus       134 SpeIs~~FGe~Ia~~~----~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e  209 (310)
                      .|+....|....+...    ..+......+..-+||++|||+|.++..|++.   +|+    ++.++.|. |...+.-++
T Consensus       149 ~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~---~p~----~~~~~~dl-p~v~~~a~~  220 (353)
T 4a6d_A          149 SEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSL---YPG----CKITVFDI-PEVVWTAKQ  220 (353)
T ss_dssp             SHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHH---CSS----CEEEEEEC-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHh---CCC----ceeEeccC-HHHHHHHHH
Confidence            3444555555443221    12222233333348999999999999988764   565    47777776 666666666


Q ss_pred             hcc
Q 021589          210 NLK  212 (310)
Q Consensus       210 ~L~  212 (310)
                      ++.
T Consensus       221 ~~~  223 (353)
T 4a6d_A          221 HFS  223 (353)
T ss_dssp             HSC
T ss_pred             hhh
Confidence            554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=89.58  E-value=0.65  Score=44.83  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+.+..++.+..   +....-+|+|+|||+|+++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus       271 ~e~l~~~~~~~l---~~~~~~~VLDlgcG~G~~~~~la~~---------~~~V~gvD~s~~al~~A~~n~~  329 (433)
T 1uwv_A          271 NQKMVARALEWL---DVQPEDRVLDLFCGMGNFTLPLATQ---------AASVVGVEGVPALVEKGQQNAR  329 (433)
T ss_dssp             HHHHHHHHHHHH---TCCTTCEEEEESCTTTTTHHHHHTT---------SSEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh---cCCCCCEEEECCCCCCHHHHHHHhh---------CCEEEEEeCCHHHHHHHHHHHH
Confidence            444445544333   3223358999999999999877543         1479999999999887776654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=89.47  E-value=0.43  Score=47.12  Aligned_cols=43  Identities=21%  Similarity=0.180  Sum_probs=31.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+|+|+|||+|.++..+.+    .+    ..+++.||+|+ +.+.-++++.
T Consensus       159 ~~~VLDiGcGtG~la~~la~----~~----~~~V~gvD~s~-~l~~A~~~~~  201 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ----AG----ARKIYAVEAST-MAQHAEVLVK  201 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH----TT----CSEEEEEECHH-HHHHHHHHHH
T ss_pred             CCEEEEecCcccHHHHHHHH----cC----CCEEEEEEcHH-HHHHHHHHHH
Confidence            35999999999998876543    22    24799999999 5555555443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=89.08  E-value=0.51  Score=40.29  Aligned_cols=44  Identities=14%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             HHHHHHcCC-CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          150 MCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       150 ~~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      .++.++.+. ....+|+|+|||+|.++..+.+.         .-+++-||+||.
T Consensus        14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---------~~~V~gvD~~~~   58 (191)
T 3dou_A           14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---------ARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---------CSEEEEEESSCC
T ss_pred             HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---------CCcEEEEecccc
Confidence            344444432 23369999999999998876543         247889999985

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=88.81  E-value=0.41  Score=40.42  Aligned_cols=30  Identities=13%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      ..+|+|+|||+|.++..+.            .+++.||+|+.
T Consensus        68 ~~~vLDiG~G~G~~~~~l~------------~~v~~~D~s~~   97 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSIR------------NPVHCFDLASL   97 (215)
T ss_dssp             TSCEEEETCTTCHHHHHCC------------SCEEEEESSCS
T ss_pred             CCeEEEECCcCCHHHHHhh------------ccEEEEeCCCC
Confidence            4589999999999877551            36899999997

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=88.71  E-value=0.97  Score=47.40  Aligned_cols=42  Identities=24%  Similarity=0.467  Sum_probs=30.9

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCc------CccccceEEEEecChh
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFK------NFTESLHIHLVECSPT  202 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p------~~~~~l~y~iVE~SP~  202 (310)
                      ...|+++|||||-|..-.+++.+...      ....+.+++.||.||.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~  457 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN  457 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH
Confidence            46899999999999877777753211      1123468999999984

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=88.59  E-value=0.81  Score=42.18  Aligned_cols=46  Identities=11%  Similarity=0.029  Sum_probs=36.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|..+..++..+..      ..+++-+|+|+.+.+.-++++.
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~------~~~v~avD~s~~~l~~a~~~~~  164 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRN------DGVIYAFDVDENRLRETRLNLS  164 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTT------CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCC------CCEEEEEcCCHHHHHHHHHHHH
Confidence            358999999999999998776421      2479999999998887776664

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=88.53  E-value=0.58  Score=43.54  Aligned_cols=47  Identities=9%  Similarity=0.150  Sum_probs=33.4

Q ss_pred             HHHHcCCC-CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          152 LWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       152 ~w~~~g~p-~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ..+.++.. ...+|+++|||+|.++.-+++.    +    .-+++-||+|+.+.+.
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~----g----a~~V~aVDvs~~mL~~  123 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQN----G----AKLVYAVDVGTNQLVW  123 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHT----T----CSEEEEECSSSSCSCH
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhC----C----CCEEEEEECCHHHHHH
Confidence            34444443 3459999999999999877653    1    1368999999987654

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=88.44  E-value=0.84  Score=44.32  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=34.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..+.+.         ..+++-||+|+.+.+.-++++.
T Consensus       292 ~~VLDlgcG~G~~sl~la~~---------~~~V~gvD~s~~ai~~A~~n~~  333 (425)
T 2jjq_A          292 EKILDMYSGVGTFGIYLAKR---------GFNVKGFDSNEFAIEMARRNVE  333 (425)
T ss_dssp             SEEEEETCTTTHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeeccchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence            48999999999999877542         1279999999999887777654

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=88.16  E-value=0.36  Score=45.07  Aligned_cols=48  Identities=17%  Similarity=0.086  Sum_probs=38.0

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.+-+|++||||.|-|+.-++..   .|    ..+|+.+|+++.+.+.-++++..
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~---~p----~a~y~a~DId~~~le~a~~~l~~  178 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGL---PA----ETVYIASDIDARLVGFVDEALTR  178 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTC---CT----TCEEEEEESBHHHHHHHHHHHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhh---CC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence            34569999999999998765431   23    35899999999999998888754

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=88.08  E-value=0.75  Score=41.72  Aligned_cols=42  Identities=21%  Similarity=0.196  Sum_probs=32.2

Q ss_pred             CcceEEEecCCchHHHHHHHHHH---hc-CcCc-cccceEEEEecCh
Q 021589          160 NRVNLVELGPGRGTLMADLLRGA---SK-FKNF-TESLHIHLVECSP  201 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l---~~-~p~~-~~~l~y~iVE~SP  201 (310)
                      ..++|+|+|.|+|..+..+++.+   ++ .|+- ...++|+-||..|
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            45899999999999999988876   22 4531 1247899999987

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=86.65  E-value=3.6  Score=42.50  Aligned_cols=68  Identities=16%  Similarity=0.121  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc-CcCccc-------------------------------
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNFTE-------------------------------  190 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~~~-------------------------------  190 (310)
                      |.||..++.+   .+......|++.+||+||++-........ .|.+..                               
T Consensus       176 e~LAa~ll~~---~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          176 ETLAAAIVMR---SGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             HHHHHHHHHH---TTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---hCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            4566655443   34334458999999999998766554322 232211                               


Q ss_pred             ---cceEEEEecChhhHHHHHHhccc
Q 021589          191 ---SLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       191 ---~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                         ..+++-+|++|.+.+.-++++..
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~  278 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARL  278 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHH
Confidence               15799999999999887777653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=85.93  E-value=1.3  Score=41.62  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..+.+   ..      -+++-||+||.+.+.-++++.
T Consensus       215 ~~vLDl~cG~G~~~l~la~---~~------~~V~gvd~~~~ai~~a~~n~~  256 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALAR---NF------DRVLATEIAKPSVAAAQYNIA  256 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGG---GS------SEEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEccCCCCHHHHHHHh---cC------CEEEEEECCHHHHHHHHHHHH
Confidence            3799999999999985432   11      269999999999887776654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=85.69  E-value=1  Score=42.55  Aligned_cols=43  Identities=14%  Similarity=0.109  Sum_probs=35.0

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|+++..+...         ..+++.||+|+...+.-++++.
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~---------~~~v~~vD~s~~~~~~a~~n~~  252 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG---------FREVVAVDSSAEALRRAEENAR  252 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH---------EEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEeeeccCHHHHHHHHh---------CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999999888764         1369999999999887777654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=85.21  E-value=0.91  Score=43.17  Aligned_cols=43  Identities=9%  Similarity=0.101  Sum_probs=34.2

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..++..-        .-+++.||+||.+.+.-++++.
T Consensus       214 ~~VLDl~cGtG~~sl~la~~g--------a~~V~~vD~s~~al~~A~~N~~  256 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGG--------AMATTSVDLAKRSRALSLAHFE  256 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTT--------BSEEEEEESCTTHHHHHHHHHH
T ss_pred             CeEEEEeeccCHHHHHHHHCC--------CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876521        1269999999999887777664

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=85.05  E-value=1.6  Score=41.81  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=46.4

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|.|+.-.+.+++...++           +....-+|+|+|||.|..+..++...   ++    .+++.+|+|+...+.-
T Consensus       225 ~G~~~~qd~~s~~~~~~l-----------~~~~g~~VLDlgaG~G~~t~~la~~~---~~----~~v~a~D~~~~~l~~~  286 (429)
T 1sqg_A          225 DGWVTVQDASAQGCMTWL-----------APQNGEHILDLCAAPGGKTTHILEVA---PE----AQVVAVDIDEQRLSRV  286 (429)
T ss_dssp             GTSEEECCHHHHTHHHHH-----------CCCTTCEEEEESCTTCHHHHHHHHHC---TT----CEEEEEESSTTTHHHH
T ss_pred             CCCeEeeCHHHHHHHHHc-----------CCCCcCeEEEECCCchHHHHHHHHHc---CC----CEEEEECCCHHHHHHH
Confidence            466665555555544332           22223589999999999999987753   21    4799999999988877


Q ss_pred             HHhcc
Q 021589          208 HHNLK  212 (310)
Q Consensus       208 ~e~L~  212 (310)
                      ++++.
T Consensus       287 ~~~~~  291 (429)
T 1sqg_A          287 YDNLK  291 (429)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=84.47  E-value=2.2  Score=39.82  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=50.8

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |+.-++--=--.|=|+|+.--+.     -.|.+-+|+=||.|.|..++.+|++.    ..   .++.+||+.|...+.-+
T Consensus        57 g~~q~te~De~~YhE~l~h~~l~-----~~p~pk~VLIiGgGdG~~~revlk~~----~v---~~v~~VEID~~Vv~~a~  124 (294)
T 3o4f_A           57 GVVQTTERDEFIYHEMMTHVPLL-----AHGHAKHVLIIGGGDGAMLREVTRHK----NV---ESITMVEIDAGVVSFCR  124 (294)
T ss_dssp             TEEEEETTTHHHHHHHHHHHHHH-----HSSCCCEEEEESCTTSHHHHHHHTCT----TC---CEEEEEESCHHHHHHHH
T ss_pred             CchhhccccHHHHHHHHHHHHHh-----hCCCCCeEEEECCCchHHHHHHHHcC----Cc---ceEEEEcCCHHHHHHHH
Confidence            44443322224677887664332     13455699999999999999887642    11   37999999999999888


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +.|..
T Consensus       125 ~~lp~  129 (294)
T 3o4f_A          125 QYLPN  129 (294)
T ss_dssp             HHCHH
T ss_pred             hcCcc
Confidence            87743

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=84.46  E-value=2.5  Score=40.76  Aligned_cols=78  Identities=12%  Similarity=-0.001  Sum_probs=49.9

Q ss_pred             CCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 021589          126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK  205 (310)
Q Consensus       126 G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~  205 (310)
                      |+.+.|| .  ..+-+.+.+...++..+.+...+ ..+|+|++||+|.++.-++...+      .+-+++.||++|...+
T Consensus        22 ~~~~~Ff-n--~~~~~nR~l~~~~~~~~~~~~~~-g~~VLDlfaGtG~~sl~aa~~~~------ga~~V~avDi~~~av~   91 (392)
T 3axs_A           22 SDMPVFY-N--PRMRVNRDLAVLGLEYLCKKLGR-PVKVADPLSASGIRAIRFLLETS------CVEKAYANDISSKAIE   91 (392)
T ss_dssp             TTCCSSC-C--GGGHHHHHHHHHHHHHHHHHHCS-CEEEEESSCTTSHHHHHHHHHCS------CEEEEEEECSCHHHHH
T ss_pred             CCCCEEE-c--CCcHHHHHHHHHHHHHHhhccCC-CCEEEECCCcccHHHHHHHHhCC------CCCEEEEEECCHHHHH
Confidence            4456676 2  23445555544444433321011 25899999999999988776431      1136999999999998


Q ss_pred             HHHHhccc
Q 021589          206 LQHHNLKC  213 (310)
Q Consensus       206 ~Q~e~L~~  213 (310)
                      .-++++..
T Consensus        92 ~~~~N~~~   99 (392)
T 3axs_A           92 IMKENFKL   99 (392)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=84.16  E-value=1.5  Score=39.94  Aligned_cols=42  Identities=19%  Similarity=0.261  Sum_probs=32.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+++|||.|..+.-+...-         .+++.||++|.+.+.-++.+.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g---------~~V~~vE~~~~~~~l~~~~l~  131 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVG---------CRVRMLERNPVVAALLDDGLA  131 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT---------CCEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcC---------CEEEEEECCHHHHHHHHHHHH
Confidence            589999999999988776531         259999999987666555543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=83.63  E-value=2.7  Score=40.12  Aligned_cols=45  Identities=11%  Similarity=0.041  Sum_probs=36.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+|+|+|||+|.++..++..+   +    ..+++.||++|...+.-++++..
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~---~----~~~V~avDi~~~av~~a~~N~~~   93 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALET---P----AEEVWLNDISEDAYELMKRNVML   93 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHS---S----CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEECCCchhHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHHHHHH
Confidence            589999999999998877653   2    13699999999999888877653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=83.33  E-value=4.2  Score=40.14  Aligned_cols=46  Identities=11%  Similarity=0.031  Sum_probs=36.7

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||+|..+..+...+..      .-+++-||+|+...+.-++++.
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~------~g~V~AvDis~~~l~~a~~n~~  147 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGG------KGLLLANEVDGKRVRGLLENVE  147 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTT------CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHH
Confidence            358999999999999998876532      1368999999999887777654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=83.04  E-value=4.2  Score=39.98  Aligned_cols=46  Identities=15%  Similarity=0.130  Sum_probs=36.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+|||.|..+..+...+..      .-+++-+|+|+...+.-++++.
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~------~g~V~AvDis~~rl~~~~~n~~  151 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKG------KGLLVTNEIFPKRAKILSENIE  151 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTT------CSEEEEECSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCC------CCEEEEEeCCHHHHHHHHHHHH
Confidence            358999999999999988876532      1368999999998887776654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=82.66  E-value=1.2  Score=42.32  Aligned_cols=43  Identities=14%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..+...-        .-+++-||+|+...+.-++++.
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g--------~~~V~~vD~s~~al~~a~~n~~  264 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGG--------CSQVVSVDTSQEALDIARQNVE  264 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTT--------CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEeeccCCHHHHHHHHCC--------CCEEEEEECCHHHHHHHHHHHH
Confidence            489999999999998876531        1379999999998887776654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=82.46  E-value=3.2  Score=38.89  Aligned_cols=44  Identities=14%  Similarity=0.151  Sum_probs=34.2

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-+|+|+| |+|.++..+...   .+    ..+++.||+||.+.+.-++++.
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~---~~----~~~v~~vDi~~~~l~~a~~~~~  216 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLS---GL----PKRIAVLDIDERLTKFIEKAAN  216 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHH---TC----CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CCEEEEEC-CCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence            35899999 999999876542   12    1479999999999887777664

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=81.76  E-value=1.3  Score=41.90  Aligned_cols=43  Identities=12%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|+++..+...    +    .-+++-||+|+...+.-++++.
T Consensus       219 ~~VLDl~~G~G~~~~~la~~----g----~~~v~~vD~s~~~l~~a~~n~~  261 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIA----G----ADEVIGIDKSPRAIETAKENAK  261 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHT----T----CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHC----C----CCEEEEEeCCHHHHHHHHHHHH
Confidence            48999999999999887653    1    1379999999998887776654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=81.37  E-value=1.1  Score=40.38  Aligned_cols=34  Identities=18%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ  204 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr  204 (310)
                      -+|+|+|||+|.++.-+.+.         ..+++.||+||.+.
T Consensus        85 ~~VLDlgcG~G~~a~~lA~~---------g~~V~~vD~s~~~~  118 (258)
T 2r6z_A           85 PTVWDATAGLGRDSFVLASL---------GLTVTAFEQHPAVA  118 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHT---------TCCEEEEECCHHHH
T ss_pred             CeEEEeeCccCHHHHHHHHh---------CCEEEEEECChhhh
Confidence            48999999999998766542         13689999999443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=80.86  E-value=2.8  Score=40.59  Aligned_cols=45  Identities=16%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||.|..+..+...+..      ..+++.+|+|+...+.-++++.
T Consensus       261 ~~VLDlgaG~G~~t~~la~~~~~------~~~v~a~D~s~~~l~~~~~~~~  305 (450)
T 2yxl_A          261 ETVVDLAAAPGGKTTHLAELMKN------KGKIYAFDVDKMRMKRLKDFVK  305 (450)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTT------CSEEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCccHHHHHHHHHcCC------CCEEEEEcCCHHHHHHHHHHHH
Confidence            58999999999999998776421      1479999999998887777664

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=80.60  E-value=2.4  Score=37.84  Aligned_cols=57  Identities=11%  Similarity=-0.056  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       144 ~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|...+++..   ..+. -.|++..||+||.+...++.-         .+++.||++|...+.-++++..
T Consensus       200 ~l~~~~i~~~---~~~~-~~vlD~f~GsGtt~~~a~~~g---------r~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          200 DLIERIIRAS---SNPN-DLVLDCFMGSGTTAIVAKKLG---------RNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             HHHHHHHHHH---CCTT-CEEEESSCTTCHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh---CCCC-CEEEECCCCCCHHHHHHHHcC---------CeEEEEeCCHHHHHHHHHHHHh
Confidence            3444554443   2232 489999999999988776531         3799999999999988888753

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=80.59  E-value=3.9  Score=37.80  Aligned_cols=46  Identities=15%  Similarity=0.288  Sum_probs=34.6

Q ss_pred             ceEEEecCCchH--HHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGT--LMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~Gt--La~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|++||||.||  +...++...  .|+    .+++-||.||.+.+.-+++|..
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~--~P~----arVv~VD~sp~mLa~Ar~~l~~  127 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSV--APE----SRVVYVDNDPIVLTLSQGLLAS  127 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHH--CTT----CEEEEEECCHHHHHTTHHHHCC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHH--CCC----CEEEEEeCChHHHHHHHHHhcc
Confidence            489999999844  445555443  343    4899999999999988888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1zkda1	365	c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {	4e-44

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 365

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  152 bits (384), Expect = 4e-44
 Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 21/228 (9%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 3   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 61

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 62  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 122 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 161

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSAASGLQIKNWRSLSTLRFVQKRWS 310
           P+HQ  K   GW E++++I        G+          L     R S
Sbjct: 162 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	100.0
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.57
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.54
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.52
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.47
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.37
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.36
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.11
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.08
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.08
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.96
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.92
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.88
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.86
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.83
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.82
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.82
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.77
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.77
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.76
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	96.61
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.6
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.43
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.42
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.42
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.37
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.32
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.29
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.27
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.25
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.0
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	95.93
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	95.92
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	95.91
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	95.84
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.8
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.73
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	95.7
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	95.69
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.68
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	95.63
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.6
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	95.6
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.49
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.33
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.28
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	95.02
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.95
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	94.84
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.73
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	94.51
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	94.5
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.21
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	94.08
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.78
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.64
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	93.5
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	93.37
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	93.13
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.01
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	93.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.97
d2h00a1	250	Methyltransferase 10 domain containing protein MET	92.46
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.16
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	91.74
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	90.85
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	90.18
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	90.12
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	88.77
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	88.18
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	87.42
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	87.31
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	85.77
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	85.64
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	85.21
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	84.81
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	84.41
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.12
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	82.75
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	81.44

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=1.6e-56  Score=429.55  Aligned_cols=189  Identities=42%  Similarity=0.844  Sum_probs=169.7

Q ss_pred             hHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcc
Q 021589           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV  162 (310)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l  162 (310)
                      .++|.+.|+++|++. |||||++||++|||||++|||+++.+||+.||||||||||++||++||+|+.++|+.++.|.++
T Consensus         3 ~~~L~~~i~~~i~~~-G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~   81 (365)
T d1zkda1           3 QTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   81 (365)
T ss_dssp             SSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             ccHHHHHHHHHHHhc-CCccHHHHHHHHcCCCCccccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            468999999999987 9999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEeccc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sl  242 (310)
                      +|||+|||+|+||+|||++++..|.++..++|++||+||.|++.|+++|..                   ..++.|+.++
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~-------------------~~~i~w~~~~  142 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG-------------------IRNIHWHDSF  142 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT-------------------CSSEEEESSG
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc-------------------cccceeccCh
Confidence            999999999999999999998889999999999999999999999999874                   1368999999


Q ss_pred             ccCCCCCCEEEEEecccccccceeEEEeCCeEEEEEEEecCCCCeeeecc
Q 021589          243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSAASGLQ  292 (310)
Q Consensus       243 eelp~~~~~vIiANE~fDALPvh~f~~~~~~w~E~~V~~~~dg~f~~~~~  292 (310)
                      +++|.. |+||||||||||||||+|++++++|+|.+|++++++.+.+...
T Consensus       143 ~~~~~~-~g~iiaNE~fDAlPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~  191 (365)
T d1zkda1         143 EDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVA  191 (365)
T ss_dssp             GGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEEC
T ss_pred             hhcccC-CeEEEecccCccccceEEEEcCccceeeeeeecccceeEEeec
Confidence            999876 8999999999999999999999999999999988887766544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.57  E-value=0.00013  Score=62.10  Aligned_cols=56  Identities=9%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       148 ~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++..+++....++.-+|+|+|||+|.++..+.+.-         .+++-||+|+.+.+.-++++.
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~---------~~v~gvD~s~~mi~~a~~~~~   84 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG---------YEVVGLDLHEEMLRVARRKAK   84 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccc---------eEEEEEeeccccccccccccc
Confidence            44456666666656689999999999988765521         268999999999987777654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.54  E-value=0.00032  Score=59.28  Aligned_cols=94  Identities=17%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhh
Q 021589          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI  228 (310)
Q Consensus       149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~  228 (310)
                      +..+.++...|. -+|+|+|||+|.++..+++.+. .|.    .+++-||+|+.|.+.-++++.....            
T Consensus        29 i~~~~~~~~~~~-~~vLDlGCGtG~~~~~l~~~~~-~~~----~~v~giD~S~~ml~~A~~~~~~~~~------------   90 (225)
T d1im8a_          29 IGMLAERFVTAD-SNVYDLGCSRGAATLSARRNIN-QPN----VKIIGIDNSQPMVERCRQHIAAYHS------------   90 (225)
T ss_dssp             HHHHHHHHCCTT-CEEEEESCTTCHHHHHHHHTCC-CSS----CEEEEECSCHHHHHHHHHHHHTSCC------------
T ss_pred             HHHHHHHhcCCC-CEEEEeccchhhHHHHHHHhhc-CCC----CceEEeCCCHHHHHHHHHHhHhhcc------------
Confidence            333344444443 5899999999999988887542 232    5899999999999998888764221            


Q ss_pred             cccCCCCeEEec-ccccCCCCCCEEEEEecccccccc
Q 021589          229 SSLAGTPVSWHA-ALEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       229 ~~~~~~~v~W~~-sleelp~~~~~vIiANE~fDALPv  264 (310)
                          ...+.+.. ...+++.....+++++.++=-+|.
T Consensus        91 ----~~~~~~~~~d~~~~~~~~~d~i~~~~~l~~~~~  123 (225)
T d1im8a_          91 ----EIPVEILCNDIRHVEIKNASMVILNFTLQFLPP  123 (225)
T ss_dssp             ----SSCEEEECSCTTTCCCCSEEEEEEESCGGGSCG
T ss_pred             ----cchhhhccchhhccccccceeeEEeeeccccCh
Confidence                12333322 122334333467888887766654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.52  E-value=9.7e-05  Score=64.89  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+....-+|+|+|||+|.|+..|++..         -+++.||+.+.|.+..++++..
T Consensus        17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~~---------~~v~avE~D~~l~~~l~~~~~~   65 (235)
T d1qama_          17 IRLNEHDNIFEIGSGKGHFTLELVQRC---------NFVTAIEIDHKLCKTTENKLVD   65 (235)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHS---------SEEEEECSCHHHHHHHHHHTTT
T ss_pred             cCCCCCCeEEEECCCchHHHHHHHhCc---------CceEEEeeccchHHHHHHHhhc
Confidence            333344589999999999999998752         2589999999999988887753

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.47  E-value=0.00025  Score=60.34  Aligned_cols=70  Identities=19%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      -++|.|++++        |..++......|.-...+|+++|||+|.++...+..    +    ..+++.||+++...+.-
T Consensus        22 l~qy~Tp~~~--------a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~----g----~~~v~~vdi~~~~~~~a   85 (201)
T d1wy7a1          22 LEQYRTPGNA--------ASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL----G----AKEVICVEVDKEAVDVL   85 (201)
T ss_dssp             GTCCCCCHHH--------HHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT----T----CSEEEEEESCHHHHHHH
T ss_pred             cccCCCCHHH--------HHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc----C----CCEEEEEcCcHHHHHHH
Confidence            4679999777        333333333344323358999999999998655432    1    13689999999998888


Q ss_pred             HHhccc
Q 021589          208 HHNLKC  213 (310)
Q Consensus       208 ~e~L~~  213 (310)
                      ++++..
T Consensus        86 ~~N~~~   91 (201)
T d1wy7a1          86 IENLGE   91 (201)
T ss_dssp             HHHTGG
T ss_pred             HHHHHH
Confidence            877654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0005  Score=59.90  Aligned_cols=52  Identities=13%  Similarity=0.263  Sum_probs=42.0

Q ss_pred             CcceEEEecCCchHHHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..++|+|+|||+|.++..||..+. .++..  .++++.||+|+.+.+.-++++..
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~--~~~~~~vD~s~~~l~~a~~~~~~   92 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGV--CINNEVVEPSAEQIAKYKELVAK   92 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTC--EEEEEEECCCHHHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCC--ceEEEEEeCcHHHHHHHHHHHhh
Confidence            457899999999999999999875 34432  25789999999998887777654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.36  E-value=0.00039  Score=58.20  Aligned_cols=87  Identities=11%  Similarity=0.153  Sum_probs=55.7

Q ss_pred             HHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcc
Q 021589          151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISS  230 (310)
Q Consensus       151 ~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~  230 (310)
                      ++.+..+....-+|+|+|||+|.++..+++.   .      -+++-||+|+.+.+.-++++.....              
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~------~~v~gvD~s~~~i~~A~~~~~~~~~--------------   62 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF---V------KKVVAFDLTEDILKVARAFIEGNGH--------------   62 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHHHTTC--------------
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHh---C------CEEEEEECCHHHHhhhhhccccccc--------------
Confidence            4444555544569999999999998876532   1      2689999999998877776643111              


Q ss_pred             cCCCCeEEe-cccccCC--CCCCEEEEEeccccccc
Q 021589          231 LAGTPVSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       231 ~~~~~v~W~-~sleelp--~~~~~vIiANE~fDALP  263 (310)
                         .++.++ .+.+++|  .+..-+|++++.+--+|
T Consensus        63 ---~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~~~~   95 (231)
T d1vl5a_          63 ---QQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFP   95 (231)
T ss_dssp             ---CSEEEEECCC-CCCSCTTCEEEEEEESCGGGCS
T ss_pred             ---ccccccccccccccccccccccccccccccccC
Confidence               123332 3344444  33345888888887775

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.11  E-value=0.00051  Score=55.14  Aligned_cols=56  Identities=13%  Similarity=0.008  Sum_probs=45.1

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +.+.|..++.++.-+|+++|||+|.+|..+.+.  -       .+++-||+|+.+.+.-+++...
T Consensus         9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~--G-------~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_           9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ--G-------YHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH--C-------CEEEEEEECHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc--C-------CceEeecccHHHHHHHHHHhcc
Confidence            445577777777789999999999999877653  1       3689999999999988887754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.08  E-value=0.00092  Score=57.18  Aligned_cols=69  Identities=10%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      -.-|.|+++|.       |.++......-+..+ -+|+|+|||+|.|+...+..   -     .-+++.||+++...+.-
T Consensus        24 leQy~T~~~~a-------~~~~~~~~~~~dl~G-k~VLDlGcGtG~l~i~a~~~---g-----a~~V~~vDid~~a~~~a   87 (197)
T d1ne2a_          24 LEQYPTDASTA-------AYFLIEIYNDGNIGG-RSVIDAGTGNGILACGSYLL---G-----AESVTAFDIDPDAIETA   87 (197)
T ss_dssp             ---CCCCHHHH-------HHHHHHHHHHTSSBT-SEEEEETCTTCHHHHHHHHT---T-----BSEEEEEESCHHHHHHH
T ss_pred             cccCCCCHHHH-------HHHHHHHHHcCCCCC-CEEEEeCCCCcHHHHHHHHc---C-----CCcccccccCHHHHHHH
Confidence            35678888884       233333333333323 49999999999987543321   1     12699999999998887


Q ss_pred             HHhcc
Q 021589          208 HHNLK  212 (310)
Q Consensus       208 ~e~L~  212 (310)
                      ++++.
T Consensus        88 r~N~~   92 (197)
T d1ne2a_          88 KRNCG   92 (197)
T ss_dssp             HHHCT
T ss_pred             HHccc
Confidence            77664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.08  E-value=0.0011  Score=54.53  Aligned_cols=77  Identities=12%  Similarity=0.084  Sum_probs=50.5

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~  239 (310)
                      ..-+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-++++....                  ..+.+.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~---------~~~v~giD~S~~~i~~ak~~~~~~~------------------~~~~~~   89 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDY---------GFEVVGVDISEDMIRKAREYAKSRE------------------SNVEFI   89 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---------TCEEEEEESCHHHHHHHHHHHHHTT------------------CCCEEE
T ss_pred             CCCEEEEECCCcchhhhhHhhh---------hcccccccccccchhhhhhhhcccc------------------cccccc
Confidence            3458999999999998766431         1368999999999988877765321                  122332


Q ss_pred             -cccccCCC--CCCEEEEEeccccccc
Q 021589          240 -AALEQVPS--GFPTIIVAHEFYDALP  263 (310)
Q Consensus       240 -~sleelp~--~~~~vIiANE~fDALP  263 (310)
                       .+.++++.  +..-+|+++.+|--+|
T Consensus        90 ~~d~~~l~~~~~~fD~I~~~~~l~~~~  116 (226)
T d1ve3a1          90 VGDARKLSFEDKTFDYVIFIDSIVHFE  116 (226)
T ss_dssp             ECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             ccccccccccCcCceEEEEecchhhCC
Confidence             22333432  2235788888887776

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0013  Score=59.11  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=39.7

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .+....-.|+|+|||.|.|+..+|+..         -+++.||+.+.|.+..++++..
T Consensus        17 ~~~~~~d~VlEIGPG~G~LT~~Ll~~~---------~~v~aiE~D~~l~~~L~~~~~~   65 (278)
T d1zq9a1          17 AALRPTDVVLEVGPGTGNMTVKLLEKA---------KKVVACELDPRLVAELHKRVQG   65 (278)
T ss_dssp             TCCCTTCEEEEECCTTSTTHHHHHHHS---------SEEEEEESCHHHHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCchHHHHHHHhcC---------CcEEEEEEccchhHHHHHHHhh
Confidence            344334589999999999999998753         1589999999999998887754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.92  E-value=0.0064  Score=52.78  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=54.4

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCC
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT  234 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~  234 (310)
                      ..+.+..-+|+|+|||+|.++..+.+..   .     .+++-||+||.+.+.-+++.....                ...
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~---~-----~~v~gvD~s~~~i~~a~~~~~~~g----------------l~~  117 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKF---G-----VSIDCLNIAPVQNKRNEEYNNQAG----------------LAD  117 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHHHT----------------CTT
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccC---C-----cEEEEEeccchhhhhhhccccccc----------------ccc
Confidence            3455566799999999999998776542   1     368999999999876666554311                011


Q ss_pred             CeEEe-cccccCC--CCCCEEEEEeccccccc
Q 021589          235 PVSWH-AALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       235 ~v~W~-~sleelp--~~~~~vIiANE~fDALP  263 (310)
                      ++... .+..++|  .+..-+|++++.|--+|
T Consensus       118 ~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~  149 (282)
T d2o57a1         118 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP  149 (282)
T ss_dssp             TEEEEECCTTSCSSCTTCEEEEEEESCGGGCS
T ss_pred             cccccccccccccccccccchhhccchhhhcc
Confidence            23322 2234443  23235788988887776

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.88  E-value=0.0022  Score=52.95  Aligned_cols=79  Identities=13%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE-e
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW-H  239 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W-~  239 (310)
                      +-+|+|+|||+|.++.-+.+..         .+++-||+|+.+.+.-+++......                 ..+.+ .
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g---------~~v~gvD~s~~~l~~a~~~~~~~~~-----------------~~~~~~~   84 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANG---------YDVTAWDKNPASMANLERIKAAEGL-----------------DNLQTDL   84 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHHHHTTC-----------------TTEEEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHHh---------hhhccccCcHHHHHHHHHHhhhccc-----------------cchhhhh
Confidence            3489999999999998776431         3689999999988866655432110                 11222 1


Q ss_pred             cccccC-CCCCCEEEEEecccccccce
Q 021589          240 AALEQV-PSGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       240 ~sleel-p~~~~~vIiANE~fDALPvh  265 (310)
                      .++.+. +.+..-+|+++.+|-.+|-.
T Consensus        85 ~d~~~~~~~~~fD~I~~~~~~~~~~~~  111 (198)
T d2i6ga1          85 VDLNTLTFDGEYDFILSTVVMMFLEAQ  111 (198)
T ss_dssp             CCTTTCCCCCCEEEEEEESCGGGSCTT
T ss_pred             eecccccccccccEEEEeeeeecCCHH
Confidence            222222 22223688899999888754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.86  E-value=9.2e-05  Score=65.53  Aligned_cols=68  Identities=24%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             CCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          123 DVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       123 ~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      .+||  -.|...+.+-.        .+   .+.++....-.|+|||||+|.|+..++...         -+++.||+++.
T Consensus         5 ~k~G--QnFL~d~~ii~--------kI---v~~~~~~~~d~VLEIGpG~G~LT~~L~~~~---------~~v~aIE~D~~   62 (245)
T d1yuba_           5 IKYS--QNFLTSEKVLN--------QI---IKQLNLKETDTVYEIGTGKGHLTTKLAKIS---------KQVTSIELDSH   62 (245)
T ss_dssp             CCSC--CCBCCCTTTHH--------HH---HHHCCCCSSEEEEECSCCCSSCSHHHHHHS---------SEEEESSSSCS
T ss_pred             CCCC--CcccCCHHHHH--------HH---HHhcCCCCCCeEEEECCCccHHHHHHHhhc---------CceeEeeeccc
Confidence            3455  35777766532        12   223444344689999999999999987652         26899999999


Q ss_pred             hHHHHHHhcc
Q 021589          203 LQKLQHHNLK  212 (310)
Q Consensus       203 Lr~~Q~e~L~  212 (310)
                      |.+.-++++.
T Consensus        63 l~~~l~~~~~   72 (245)
T d1yuba_          63 LFNLSSEKLK   72 (245)
T ss_dssp             SSSSSSCTTT
T ss_pred             chhhhhhhhh
Confidence            8765555543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.85  E-value=0.0018  Score=54.75  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=50.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEec
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA  240 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~  240 (310)
                      .-+|+|+|||+|.++..+.+.   .      -+++-||+|+.+.+.-++++....                 -.++.|..
T Consensus        17 ~~rILDiGcGtG~~~~~la~~---~------~~v~gvD~S~~~l~~A~~~~~~~~-----------------~~~~~~~~   70 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPY---V------QECIGVDATKEMVEVASSFAQEKG-----------------VENVRFQQ   70 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG---S------SEEEEEESCHHHHHHHHHHHHHHT-----------------CCSEEEEE
T ss_pred             CCEEEEeCCcCcHHHHHHHHh---C------CeEEEEeCChhhhhhhhhhhcccc-----------------cccccccc
Confidence            348999999999999877542   1      158999999999887776664311                 01344432


Q ss_pred             -ccccCC--CCCCEEEEEeccccccc
Q 021589          241 -ALEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       241 -sleelp--~~~~~vIiANE~fDALP  263 (310)
                       +.+++|  .+..-+|++++.|--+|
T Consensus        71 ~d~~~~~~~~~~fD~v~~~~~l~~~~   96 (234)
T d1xxla_          71 GTAESLPFPDDSFDIITCRYAAHHFS   96 (234)
T ss_dssp             CBTTBCCSCTTCEEEEEEESCGGGCS
T ss_pred             cccccccccccccceeeeeceeeccc
Confidence             234443  33335788888876665

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0048  Score=52.41  Aligned_cols=85  Identities=8%  Similarity=0.071  Sum_probs=54.5

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCC
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGT  234 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~  234 (310)
                      .++....-+|+|+|||+|.++..+.+.   .+     .+++-||+||.+.+.-+++.....                .+.
T Consensus        28 ~~~l~pg~~VLDiGCG~G~~~~~la~~---~~-----~~v~GvD~s~~~~~~ar~~~~~~g----------------l~~   83 (245)
T d1nkva_          28 VLRMKPGTRILDLGSGSGEMLCTWARD---HG-----ITGTGIDMSSLFTAQAKRRAEELG----------------VSE   83 (245)
T ss_dssp             HTCCCTTCEEEEETCTTCHHHHHHHHH---TC-----CEEEEEESCHHHHHHHHHHHHHTT----------------CTT
T ss_pred             HcCCCCCCEEEEEcCCCCHHHHHHHHh---cC-----CEEEEEecccchhhHHHHHHHHhh----------------ccc
Confidence            345544469999999999998876543   22     478999999999887666543211                112


Q ss_pred             CeEEec-ccccC-CCCCCEEEEEeccccccc
Q 021589          235 PVSWHA-ALEQV-PSGFPTIIVAHEFYDALP  263 (310)
Q Consensus       235 ~v~W~~-sleel-p~~~~~vIiANE~fDALP  263 (310)
                      ++.+.. +.+++ +.+..-+|++.+.+.-+|
T Consensus        84 ~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~  114 (245)
T d1nkva_          84 RVHFIHNDAAGYVANEKCDVAACVGATWIAG  114 (245)
T ss_dssp             TEEEEESCCTTCCCSSCEEEEEEESCGGGTS
T ss_pred             cchhhhhHHhhccccCceeEEEEEehhhccC
Confidence            344432 22332 333236888888888876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.82  E-value=0.0012  Score=58.05  Aligned_cols=81  Identities=16%  Similarity=0.168  Sum_probs=53.3

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEE
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSW  238 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W  238 (310)
                      ..+.+|+|+|||+|.++..+...+   |   ...+++-||+|+.+.+.-++++...                  +.++.+
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~---~---~~~~v~giD~s~~~l~~a~~~~~~~------------------~~~~~f   81 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLL---P---EGSKYTGIDSGETLLAEARELFRLL------------------PYDSEF   81 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTS---C---TTCEEEEEECCHHHHHHHHHHHHSS------------------SSEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhC---C---CCCEEEEEecchhHhhhhhcccccc------------------cccccc
Confidence            456799999999999988765432   2   1247899999999988777766531                  112333


Q ss_pred             e-cccccCCC-CCCEEEEEeccccccc
Q 021589          239 H-AALEQVPS-GFPTIIVAHEFYDALP  263 (310)
Q Consensus       239 ~-~sleelp~-~~~~vIiANE~fDALP  263 (310)
                      . .+.++++. +..-+|+++.+|--+|
T Consensus        82 ~~~d~~~~~~~~~fD~v~~~~~l~~~~  108 (281)
T d2gh1a1          82 LEGDATEIELNDKYDIAICHAFLLHMT  108 (281)
T ss_dssp             EESCTTTCCCSSCEEEEEEESCGGGCS
T ss_pred             cccccccccccCCceEEEEehhhhcCC
Confidence            2 12333332 2235889999888776

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.82  E-value=0.0032  Score=54.76  Aligned_cols=86  Identities=16%  Similarity=0.124  Sum_probs=57.1

Q ss_pred             HHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccC
Q 021589          153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA  232 (310)
Q Consensus       153 w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~  232 (310)
                      .+.+......+|+|+|||+|.++..+|...   .     -+++.||+|+.+.+.-++++....                 
T Consensus        86 l~~l~~~~~~~vLD~GcG~G~~t~~ll~~~---~-----~~v~~vD~s~~~l~~a~~~~~~~~-----------------  140 (254)
T d1xtpa_          86 IASLPGHGTSRALDCGAGIGRITKNLLTKL---Y-----ATTDLLEPVKHMLEEAKRELAGMP-----------------  140 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTTTHHHHHTHHHH---C-----SEEEEEESCHHHHHHHHHHTTTSS-----------------
T ss_pred             HhhCCCCCCCeEEEecccCChhhHHHHhhc---C-----ceEEEEcCCHHHHHhhhccccccc-----------------
Confidence            344444455699999999999999987643   1     158999999999988887765311                 


Q ss_pred             CCCeEEe-cccccCC--CCCCEEEEEecccccccce
Q 021589          233 GTPVSWH-AALEQVP--SGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       233 ~~~v~W~-~sleelp--~~~~~vIiANE~fDALPvh  265 (310)
                        .++.+ .++++++  .+..-+|+++.+|--+|-+
T Consensus       141 --~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl~d~  174 (254)
T d1xtpa_         141 --VGKFILASMETATLPPNTYDLIVIQWTAIYLTDA  174 (254)
T ss_dssp             --EEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHH
T ss_pred             --cceeEEccccccccCCCccceEEeeccccccchh
Confidence              12221 2233332  2224688888898888754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0014  Score=55.22  Aligned_cols=80  Identities=13%  Similarity=0.129  Sum_probs=53.3

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEe
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH  239 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~  239 (310)
                      ...+|+|+|||+|.++..++..   .+     -+++.||+|+.+.+.-++++.....                 ..+.++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~---~~-----~~v~~vD~s~~~l~~ak~~~~~~~~-----------------~~~~f~  114 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLP---LF-----REVDMVDITEDFLVQAKTYLGEEGK-----------------RVRNYF  114 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTT---TC-----SEEEEEESCHHHHHHHHHHTGGGGG-----------------GEEEEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHh---cC-----CEEEEeecCHHHhhccccccccccc-----------------cccccc
Confidence            4468999999999998877532   22     2689999999999988887754211                 112222


Q ss_pred             -cccccCC--CCCCEEEEEecccccccc
Q 021589          240 -AALEQVP--SGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       240 -~sleelp--~~~~~vIiANE~fDALPv  264 (310)
                       .++++++  .+..-+|+++.++..+|-
T Consensus       115 ~~d~~~~~~~~~~fD~I~~~~~l~h~~~  142 (222)
T d2ex4a1         115 CCGLQDFTPEPDSYDVIWIQWVIGHLTD  142 (222)
T ss_dssp             ECCGGGCCCCSSCEEEEEEESCGGGSCH
T ss_pred             cccccccccccccccccccccccccchh
Confidence             2233333  222367888899988874

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.77  E-value=0.0027  Score=56.69  Aligned_cols=76  Identities=11%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL  206 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~  206 (310)
                      ..|-|+|+..|..+..+++..++       ......+|+|.|||+|.|...+++.+....  ....+++-+|+++.+.+.
T Consensus        91 ~~g~~~TP~~i~~~m~~l~~~~~-------~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~--~~~~~~~g~di~~~~~~~  161 (328)
T d2f8la1          91 QVNHQMTPDSIGFIVAYLLEKVI-------QKKKNVSILDPACGTANLLTTVINQLELKG--DVDVHASGVDVDDLLISL  161 (328)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHH-------TTCSEEEEEETTCTTSHHHHHHHHHHHTTS--SCEEEEEEEESCHHHHHH
T ss_pred             cCCeEECcHHHHHHHHHHHHHHh-------CCCCCCEEEeCCCCcchhHHHHHHHHHhcc--CccceEEEecccHHHHHH
Confidence            35778999888766555443332       223457999999999999999999885421  122578899999998876


Q ss_pred             HHHhc
Q 021589          207 QHHNL  211 (310)
Q Consensus       207 Q~e~L  211 (310)
                      -+..+
T Consensus       162 a~~~~  166 (328)
T d2f8la1         162 ALVGA  166 (328)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.76  E-value=0.0017  Score=53.84  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=36.0

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.....-+|+|+|||+|.++..+..   ..+      +++.||+|+...+.-++++.
T Consensus        48 l~~~~~~~VLDiGcG~G~~~~~la~---~~~------~v~~iD~s~~~i~~a~~n~~   95 (194)
T d1dusa_          48 VVVDKDDDILDLGCGYGVIGIALAD---EVK------STTMADINRRAIKLAKENIK   95 (194)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHGG---GSS------EEEEEESCHHHHHHHHHHHH
T ss_pred             CCcCCCCeEEEEeecCChhHHHHHh---hcc------ccceeeeccccchhHHHHHH
Confidence            4444445999999999999876543   223      58899999999888777664

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.61  E-value=0.0055  Score=51.99  Aligned_cols=53  Identities=21%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++....-+|+|+|||+|.++.-+.+....      .-+++.+|+++.+.+..++++..
T Consensus        70 ~l~l~~g~~VLdiG~GtG~~s~~la~~~~~------~g~V~~id~~~~~~~~a~~~~~~  122 (213)
T d1dl5a1          70 WVGLDKGMRVLEIGGGTGYNAAVMSRVVGE------KGLVVSVEYSRKICEIAKRNVER  122 (213)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCT------TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccccceEEEecCccchhHHHHHHHhCC------CCcEEEeecchhhHHHhhhhHhh
Confidence            344444469999999999999876655421      23689999999999999998864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.60  E-value=0.0039  Score=52.49  Aligned_cols=54  Identities=28%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             HHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       148 ~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ++.+.+...-.+  -+|+|+|||+|.++..+.+.   .      -+++-||+|+.+.+.-++++.
T Consensus        10 ~~~~~~~~~~~~--~~VLDiGcG~G~~~~~l~~~---g------~~v~giD~s~~~i~~a~~~~~   63 (225)
T d2p7ia1          10 FMVRAFTPFFRP--GNLLELGSFKGDFTSRLQEH---F------NDITCVEASEEAISHAQGRLK   63 (225)
T ss_dssp             HHHHHHGGGCCS--SCEEEESCTTSHHHHHHTTT---C------SCEEEEESCHHHHHHHHHHSC
T ss_pred             HHHHHhhhhCCC--CcEEEEeCCCcHHHHHHHHc---C------CeEEEEeCcHHHhhhhhcccc
Confidence            333444443333  37999999999988754321   1      258999999999988777654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0011  Score=58.74  Aligned_cols=43  Identities=19%  Similarity=0.236  Sum_probs=35.4

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .-.|+|+|||.|.|+..+++..         -+++.||+.+.|.+..++++.
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~~---------~~v~aiEiD~~l~~~L~~~~~   64 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGERL---------DQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTTC---------SCEEEECCCHHHHHHHHTCTT
T ss_pred             CCEEEEECCCchHHHHHHHccC---------CceEEEEeccchhHHHHHHhh
Confidence            3489999999999999998632         259999999999998877553

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.42  E-value=0.0025  Score=54.06  Aligned_cols=56  Identities=14%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             HHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       147 ~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .++.+..+..+. .+-+|+|+|||+|.++..+.+.   .      .+++-||.|+.|.+.-++++.
T Consensus        25 ~~~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~---g------~~v~GvD~S~~ml~~A~~~~~   80 (246)
T d1y8ca_          25 DFIIEKCVENNL-VFDDYLDLACGTGNLTENLCPK---F------KNTWAVDLSQEMLSEAENKFR   80 (246)
T ss_dssp             HHHHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG---S------SEEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh---C------CccEeeccchhhhhhcccccc
Confidence            345555555443 3458999999999988766432   1      368999999999877666553

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0016  Score=55.53  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++..+++.   .+     -+++.||+||.+.+.-+++...
T Consensus        55 ~~VLdIGcG~G~~a~~~a~~---~~-----~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          55 GRVLEVGFGMAIAASKVQEA---PI-----DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             EEEEEECCTTSHHHHHHHTS---CE-----EEEEEEECCHHHHHHHHHHGGG
T ss_pred             CeEEEeeccchHHHHHHHHc---CC-----CeEEEeCCCHHHHHHHHHHhhh
Confidence            58999999999998877542   22     2689999999999988887654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0025  Score=57.86  Aligned_cols=48  Identities=21%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          158 QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       158 ~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+...+|+|+|||.|.|+..+|...+  |     -+++.||+.+.+.+..++++.
T Consensus        41 ~~~~~~VlEIGPG~G~LT~~Ll~~~~--~-----~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          41 HPEELKVLDLYPGVGIQSAIFYNKYC--P-----RQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CTTTCEEEEESCTTCHHHHHHHHHHC--C-----SEEEEECCCHHHHHHHHHHTT
T ss_pred             ccCCCeEEEECCCCCHHHHHHHhcCC--C-----CEEEEEECCHHHHHHHHHhcc
Confidence            34567999999999999999998752  1     269999999999998888764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0048  Score=51.24  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       146 a~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..++.....+... .+.+|+|+|||+|.++..+.+.         ..+++-||+|+.+.+.-+++.
T Consensus        29 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~---------~~~v~giD~s~~~l~~a~~~~   84 (246)
T d2avna1          29 HRLIGSFLEEYLK-NPCRVLDLGGGTGKWSLFLQER---------GFEVVLVDPSKEMLEVAREKG   84 (246)
T ss_dssp             HHHHHHHHHHHCC-SCCEEEEETCTTCHHHHHHHTT---------TCEEEEEESCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcC-CCCEEEEECCCCchhccccccc---------ceEEEEeeccccccccccccc
Confidence            3333333443333 3458999999999999866431         137999999999998777764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.29  E-value=0.012  Score=52.10  Aligned_cols=92  Identities=14%  Similarity=0.145  Sum_probs=60.9

Q ss_pred             HHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhh
Q 021589          149 AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTI  228 (310)
Q Consensus       149 ~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~  228 (310)
                      +..+.++++....-+|+|||||.|.++..+.+..   +     .+++-|++|+...+.-+++......            
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~---g-----~~v~gi~ls~~q~~~a~~~~~~~~l------------  100 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF---D-----VNVIGLTLSKNQHARCEQVLASIDT------------  100 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHTSCC------------
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC---c-----eeEEEecchHHHHHHHHHHHHhhcc------------
Confidence            4445566665555699999999999987765442   2     3799999999998877776654211            


Q ss_pred             cccCCCCeEEe-cccccCCCCCCEEEEEecccccccce
Q 021589          229 SSLAGTPVSWH-AALEQVPSGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       229 ~~~~~~~v~W~-~sleelp~~~~~vIiANE~fDALPvh  265 (310)
                          ...+... ....+++.. .-.|++-|.|..++..
T Consensus       101 ----~~~~~~~~~d~~~~~~~-fD~i~si~~~eh~~~~  133 (280)
T d2fk8a1         101 ----NRSRQVLLQGWEDFAEP-VDRIVSIEAFEHFGHE  133 (280)
T ss_dssp             ----SSCEEEEESCGGGCCCC-CSEEEEESCGGGTCGG
T ss_pred             ----ccchhhhhhhhhhhccc-hhhhhHhhHHHHhhhh
Confidence                1122221 223344433 4578999999999754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0099  Score=51.72  Aligned_cols=46  Identities=11%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+.+|+|+|||+|.++..+.+..   |+    .+++-||+|+.+.+.-++++.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~---~~----~~~~giD~s~~~~~~a~~~~~  129 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADAL---PE----ITTFGLDVSKVAIKAAAKRYP  129 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTC---TT----SEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHC---CC----CEEEEecchHhhhhhhhcccc
Confidence            44699999999999998876543   33    478899999999877666543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.25  E-value=0.0051  Score=53.00  Aligned_cols=91  Identities=18%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             hcCCCCcccCCCCCCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccc
Q 021589          111 LTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE  190 (310)
Q Consensus       111 LY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~  190 (310)
                      +|-|+.-|--..-++| .|-++.+|.+       .|+.+ +.+. ....+.-+|+|+|+|+|.++.-+-+.+... ....
T Consensus        41 ~Fvp~~aY~D~~lpi~-~~~~is~P~~-------~a~~l-~~L~-~~l~~g~~VLeIGtGsGY~ta~la~l~g~~-g~~~  109 (223)
T d1r18a_          41 HYSPRNPYMDAPQPIG-GGVTISAPHM-------HAFAL-EYLR-DHLKPGARILDVGSGSGYLTACFYRYIKAK-GVDA  109 (223)
T ss_dssp             GTCSSCTTBSSCEEEE-TTEEECCHHH-------HHHHH-HHTT-TTCCTTCEEEEESCTTSHHHHHHHHHHHHS-CCCT
T ss_pred             HcCCccccCCCCcccc-CCceeehhhh-------HHHHH-HHHh-hccCCCCeEEEecCCCCHHHHHHHHHhhhc-cCCc
Confidence            4456554433344565 4567777765       22222 2211 022223599999999999998665554321 1222


Q ss_pred             cceEEEEecChhhHHHHHHhcc
Q 021589          191 SLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       191 ~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      ..+++-||.++.|.+.-++++.
T Consensus       110 ~~~V~~iE~~~~l~~~a~~~l~  131 (223)
T d1r18a_         110 DTRIVGIEHQAELVRRSKANLN  131 (223)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccEEEEEecCHHHHHHHHHhhh
Confidence            3478999999999988777664

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0027  Score=59.84  Aligned_cols=66  Identities=14%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHh
Q 021589          138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN  210 (310)
Q Consensus       138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~  210 (310)
                      ..+|||++-..+.++.++++....-+|+++|||.|.++..+....   +    .-+++=||+||.+.+.-+++
T Consensus       194 ~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~---g----~~~v~GIDiS~~~i~~Ak~~  259 (406)
T d1u2za_         194 NYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC---G----CALSFGCEIMDDASDLTILQ  259 (406)
T ss_dssp             GGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH---C----CSEEEEEECCHHHHHHHHHH
T ss_pred             CCccccCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHc---C----CCeEEEEeCCHHHHHHHHHH
Confidence            456899999999999999886555699999999999998876553   2    12689999999987755443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.93  E-value=0.0059  Score=53.70  Aligned_cols=53  Identities=21%  Similarity=0.254  Sum_probs=41.9

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++....-+|+|+|||+|.|+..+++.+...      -+++.+|.++.+.+.-++++..
T Consensus        80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~------g~V~~vD~~e~~~~~A~~n~~~  132 (250)
T d1yb2a1          80 RCGLRPGMDILEVGVGSGNMSSYILYALNGK------GTLTVVERDEDNLKKAMDNLSE  132 (250)
T ss_dssp             -CCCCTTCEEEEECCTTSHHHHHHHHHHTTS------SEEEEECSCHHHHHHHHHHHHT
T ss_pred             HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCC------cEEEEEECCHHHHHHHHHHHHH
Confidence            3454444699999999999999999886422      3689999999999988888764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.007  Score=53.16  Aligned_cols=48  Identities=21%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +...|. -+|+|+|||+|.++....+    ..     .+++-||+||.+.+.-+++..
T Consensus       116 ~~~~~g-~~VLDiGcGsG~l~i~aa~----~g-----~~V~gvDis~~av~~A~~na~  163 (254)
T d2nxca1         116 RHLRPG-DKVLDLGTGSGVLAIAAEK----LG-----GKALGVDIDPMVLPQAEANAK  163 (254)
T ss_dssp             HHCCTT-CEEEEETCTTSHHHHHHHH----TT-----CEEEEEESCGGGHHHHHHHHH
T ss_pred             hhcCcc-CEEEEcccchhHHHHHHHh----cC-----CEEEEEECChHHHHHHHHHHH
Confidence            334444 4999999999999864332    11     268899999999987777664

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.91  E-value=0.064  Score=47.58  Aligned_cols=98  Identities=12%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCcc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~  222 (310)
                      ++--+-+..+.++++....-+|+|+|||.|.++..+....   +     .+++-|.+|+...+.-+++......  .   
T Consensus        44 ~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~---g-----~~v~git~s~~q~~~a~~~~~~~~l--~---  110 (291)
T d1kpia_          44 EAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY---D-----VNVIGLTLSENQYAHDKAMFDEVDS--P---  110 (291)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHHSCC--S---
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc---C-----cceeeccchHHHHHHHHHHHHhhcc--c---
Confidence            3333344445667776666799999999999988776543   2     4788999999887766655543110  0   


Q ss_pred             chhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccc
Q 021589          223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       223 ~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPv  264 (310)
                               ....+.+.+ ... +.+..-.|+|.|.|..+|-
T Consensus       111 ---------~~v~~~~~d-~~~-~~~~fD~i~sie~~eH~~~  141 (291)
T d1kpia_         111 ---------RRKEVRIQG-WEE-FDEPVDRIVSLGAFEHFAD  141 (291)
T ss_dssp             ---------SCEEEEECC-GGG-CCCCCSEEEEESCGGGTTC
T ss_pred             ---------hhhhhhhhc-ccc-cccccceEeechhHHhcch
Confidence                     001122221 122 2222357999999999983

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.84  E-value=0.02  Score=49.45  Aligned_cols=49  Identities=16%  Similarity=0.201  Sum_probs=36.6

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+..-+|+++|||+|.++..+++.   +|+    ++++.+|. |...+.-++++..
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~---~P~----~~~~~~Dl-p~~~~~a~~~~~~  126 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALR---APH----LRGTLVEL-AGPAERARRRFAD  126 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHH---CTT----CEEEEEEC-HHHHHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHh---hcC----cEEEEecC-hHHHHHHHHHHhh
Confidence            3344458999999999999999875   454    58999997 6666666666653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.80  E-value=0.0049  Score=53.26  Aligned_cols=50  Identities=16%  Similarity=0.149  Sum_probs=37.8

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .++....-+|+++|||+|+.+..+.+..   |+    -.++-||+||.+.+.-+++.
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~---~~----g~V~aVDiS~~~i~~a~~~a  118 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIA---DK----GIVYAIEYAPRIMRELLDAC  118 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHT---TT----SEEEEEESCHHHHHHHHHHT
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhC---CC----CEEEEEeCcHHHHHHHHHHH
Confidence            3444344699999999999999988753   32    37999999999987666544

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.013  Score=51.99  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -|.|..+++...    ...+.+|+|+|+|+|.++..+...   .|+    .+++.||+|+.-.+.-+++..
T Consensus        94 TE~lv~~~l~~~----~~~~~~vlDlGtGSG~I~i~la~~---~p~----~~v~avDis~~Al~~A~~Na~  153 (274)
T d2b3ta1          94 TECLVEQALARL----PEQPCRILDLGTGTGAIALALASE---RPD----CEIIAVDRMPDAVSLAQRNAQ  153 (274)
T ss_dssp             HHHHHHHHHHHS----CSSCCEEEEETCTTSHHHHHHHHH---CTT----SEEEEECSSHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhh----cccccceeeeehhhhHHHHHHHhh---CCc----ceeeeccchhHHHhHHHHHHH
Confidence            455555554332    234578999999999998887654   343    489999999988877666654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.70  E-value=0.023  Score=48.57  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             CCCCCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       124 ~~G~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      ++| .|-++.+|.+.   +.+        ++.++....-+|+|+|+|+|.++. +|..+..       -+++.||..+.|
T Consensus        54 ~i~-~g~~is~P~~~---a~m--------l~~L~l~~g~~VLeIGsGsGY~ta-ila~l~g-------~~V~~ie~~~~l  113 (215)
T d1jg1a_          54 PIP-AGQTVSAPHMV---AIM--------LEIANLKPGMNILEVGTGSGWNAA-LISEIVK-------TDVYTIERIPEL  113 (215)
T ss_dssp             ECS-TTCEECCHHHH---HHH--------HHHHTCCTTCCEEEECCTTSHHHH-HHHHHHC-------SCEEEEESCHHH
T ss_pred             ccc-hhhhhhhhhhH---HHH--------HHhhccCccceEEEecCCCChhHH-HHHHhhC-------ceeEEEeccHHH
Confidence            454 45688887642   222        223344334599999999999997 6655532       248899999999


Q ss_pred             HHHHHHhcccc
Q 021589          204 QKLQHHNLKCM  214 (310)
Q Consensus       204 r~~Q~e~L~~~  214 (310)
                      .+..+++|...
T Consensus       114 ~~~a~~~l~~~  124 (215)
T d1jg1a_         114 VEFAKRNLERA  124 (215)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999888653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.011  Score=51.47  Aligned_cols=54  Identities=19%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          146 GVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       146 a~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ..|+.+.++..+.   -+|+|+|||+|.++..+.+.-         .+++-||+|+.+.+.-+++.
T Consensus        45 ~~~l~~~l~~~~~---~~vLD~GcG~G~~~~~la~~g---------~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          45 KAWLLGLLRQHGC---HRVLDVACGTGVDSIMLVEEG---------FSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             HHHHHHHHHHTTC---CEEEESSCTTSHHHHHHHHTT---------CEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCC---CEEEEecCCCcHHHHHHHHcC---------CeeeeccCchHHHHHHHHHH
Confidence            3566666655432   389999999999988876431         36899999999987655543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.026  Score=47.34  Aligned_cols=100  Identities=9%  Similarity=-0.101  Sum_probs=57.4

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccC--CcCccchhhhhcccCCC
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDEN--NANDNVEERTISSLAGT  234 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~--~~~~~~~~~~~~~~~~~  234 (310)
                      +.+...+|+++|||+|.++.-+.+.-         .+++-||+||...+..+++.......  .....  ........+.
T Consensus        42 ~~~~~~rvLd~GCG~G~~a~~LA~~G---------~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~  110 (229)
T d2bzga1          42 KGKSGLRVFFPLCGKAVEMKWFADRG---------HSVVGVEISELGIQEFFTEQNLSYSEEPITEIP--GTKVFKSSSG  110 (229)
T ss_dssp             TTCCSCEEEETTCTTCTHHHHHHHTT---------CEEEEECSCHHHHHHHHHHTTCCEEEEECTTST--TCEEEEETTS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHhCC---------CcEEEEeCCHHHHHHHHHHhhccccccchhccc--ccceeeecCC
Confidence            34445699999999999988775421         36899999999987666654321100  00000  0000011234


Q ss_pred             CeEEecc-cccC---CCCCCEEEEEecccccccceeE
Q 021589          235 PVSWHAA-LEQV---PSGFPTIIVAHEFYDALPVHQF  267 (310)
Q Consensus       235 ~v~W~~s-leel---p~~~~~vIiANE~fDALPvh~f  267 (310)
                      .+.|+.. +.++   ..+..-+|+...+|-++|.+..
T Consensus       111 ~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r  147 (229)
T d2bzga1         111 NISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDR  147 (229)
T ss_dssp             SEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGH
T ss_pred             cEEEEEcchhhccccccCceeEEEEEEEEEeccchhh
Confidence            5666422 2222   2222357888999999986643

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.63  E-value=0.013  Score=51.82  Aligned_cols=52  Identities=19%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ++.....+|+|+|||+|.|+..+.+.+...      -+++-+|+++.+.+.-++++..
T Consensus        92 l~i~PG~~VLE~G~GsG~lt~~La~~vgp~------G~V~~~d~~~~~~~~Ar~n~~~  143 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGSGALTLSLLRAVGPA------GQVISYEQRADHAEHARRNVSG  143 (264)
T ss_dssp             TTCCTTCEEEEECCTTSHHHHHHHHHHCTT------SEEEEECSCHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEecCcCCcHHHHHHHHhhCCC------cEEEEecCCHHHHHHHHHhhhh
Confidence            454445699999999999999999886321      3789999999999988887754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.60  E-value=0.032  Score=47.94  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=44.6

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |-++++|++.   +.+        .+.+.....-+|+|+|||+|.++. +|..+.        -+++-||+++.+.+.-+
T Consensus        50 g~~~~~p~~~---a~m--------l~~L~l~~g~~VLdIG~GsGy~ta-~La~l~--------~~V~aiE~~~~~~~~A~  109 (224)
T d1vbfa_          50 GINTTALNLG---IFM--------LDELDLHKGQKVLEIGTGIGYYTA-LIAEIV--------DKVVSVEINEKMYNYAS  109 (224)
T ss_dssp             TEEECCHHHH---HHH--------HHHTTCCTTCEEEEECCTTSHHHH-HHHHHS--------SEEEEEESCHHHHHHHH
T ss_pred             CCceehhhhH---HHH--------HHHhhhcccceEEEecCCCCHHHH-HHHHHh--------cccccccccHHHHHHHH
Confidence            5567777652   222        222333334599999999999986 555442        15889999999999888


Q ss_pred             Hhccc
Q 021589          209 HNLKC  213 (310)
Q Consensus       209 e~L~~  213 (310)
                      +++..
T Consensus       110 ~~~~~  114 (224)
T d1vbfa_         110 KLLSY  114 (224)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            87654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.013  Score=51.64  Aligned_cols=53  Identities=23%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             HcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       155 ~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .++.....+|+|+|||+|.++..+++.+..      .-+++-+|+||.+.+.-++++..
T Consensus        98 ~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~------~G~V~~vD~~~~~~~~A~~~~~~  150 (266)
T d1o54a_          98 MLDVKEGDRIIDTGVGSGAMCAVLARAVGS------SGKVFAYEKREEFAKLAESNLTK  150 (266)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHTTT------TCEEEEECCCHHHHHHHHHHHHH
T ss_pred             hhCCCCCCEEEECCCCCCHHHHHHHHHhCC------CcEEEEEeCCHHHHHHHHHHHHH
Confidence            345444569999999999999999887532      24799999999999988887754

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.58  E-value=0.0068  Score=52.40  Aligned_cols=53  Identities=15%  Similarity=0.061  Sum_probs=40.4

Q ss_pred             HHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       154 ~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      +.++...--+|+|+|||+|+++..+.+.....      =+++-||+||.+.+.-+++..
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~------G~V~aVD~s~~~l~~a~~~a~  119 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWE------GKIFGIEFSPRVLRELVPIVE  119 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTT------SEEEEEESCHHHHHHHHHHHS
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCC------CEEEEEeCcHHHHHHHHHHHH
Confidence            33444444699999999999999998875321      368999999999887776654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.49  E-value=0.039  Score=47.14  Aligned_cols=84  Identities=17%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCC
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTP  235 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~  235 (310)
                      ......-+|+|+|||+|.++..+++.   +|+    ++++.+|.++ +.+.-++++....                ....
T Consensus        76 ~d~~~~~~VLDvGcG~G~~~~~la~~---~p~----~~~~~~D~~~-~~~~a~~~~~~~~----------------~~~r  131 (253)
T d1tw3a2          76 YDWTNVRHVLDVGGGKGGFAAAIARR---APH----VSATVLEMAG-TVDTARSYLKDEG----------------LSDR  131 (253)
T ss_dssp             SCCTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEECTT-HHHHHHHHHHHTT----------------CTTT
T ss_pred             cCCccCCEEEEeCCCCCHHHHHHHHh---cce----eEEEEccCHH-HHHHHHHHHHHhh----------------cccc
Confidence            34444458999999999999988764   454    5788899854 4444444443211                1224


Q ss_pred             eEEecc--cccCCCCCCEEEEEecccccccc
Q 021589          236 VSWHAA--LEQVPSGFPTIIVAHEFYDALPV  264 (310)
Q Consensus       236 v~W~~s--leelp~~~~~vIiANE~fDALPv  264 (310)
                      +.+...  ++..|.+ .-+|+.+.+|-.+|-
T Consensus       132 v~~~~~D~~~~~~~~-~D~v~~~~vlh~~~d  161 (253)
T d1tw3a2         132 VDVVEGDFFEPLPRK-ADAIILSFVLLNWPD  161 (253)
T ss_dssp             EEEEECCTTSCCSSC-EEEEEEESCGGGSCH
T ss_pred             hhhccccchhhcccc-hhheeeccccccCCc
Confidence            555321  2333443 246677777777763

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.33  E-value=0.011  Score=48.55  Aligned_cols=48  Identities=17%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      +....-+|+|+|||+|.++..+++.   .+      +++-||+||.+.+.-++++..
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~---~~------~V~avD~~~~~l~~a~~n~~~   77 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGR---VR------RVYAIDRNPEAISTTEMNLQR   77 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTT---SS------EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCeEccccccccc---ce------EEEEecCCHHHHHHHHHHHHH
Confidence            3333458999999999998765432   21      688999999999988887754

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.28  E-value=0.01  Score=50.36  Aligned_cols=49  Identities=18%  Similarity=0.092  Sum_probs=37.0

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ++....-+|+|+|||+|+++..+.+..   |+    -+++-||+||.+.+.-+++.
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v---~~----g~V~gvDis~~~i~~a~~~a  100 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIV---DE----GIIYAVEYSAKPFEKLLELV  100 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHT---TT----SEEEEECCCHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhc---cC----CeEEEEeCCHHHHHHHHHHh
Confidence            443344699999999999999887653   32    37999999999887665554

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.03  Score=47.73  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=35.8

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|||+|.++.-+.+....      .-+++-||+++.+.+.-++++..
T Consensus        78 ~~VLdiG~GsGy~ta~la~l~~~------~g~V~~ie~~~~l~~~a~~~l~~  123 (224)
T d1i1na_          78 AKALDVGSGSGILTACFARMVGC------TGKVIGIDHIKELVDDSVNNVRK  123 (224)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCT------TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCCCHHHHHHHHHhCC------CceEEEEcCCHHHHHHHHHhccc
Confidence            59999999999998765554321      13689999999999988877754

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0094  Score=53.74  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       142 Ge~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      ||+-...+.++.+.++....-.|+|+|||.|.++..+...   .+    ..+++=||+|+.+.+..++.+
T Consensus       133 ~e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~---~~----~~~~~Gid~s~~~~~~a~~~~  195 (328)
T d1nw3a_         133 GETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA---TN----CKHHYGVEKADIPAKYAETMD  195 (328)
T ss_dssp             CCCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHH---CC----CSEEEEEECSHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHH---hC----CCeEEEEeCCHHHHHHHHHHH
Confidence            3333344455666677655569999999999998877543   22    136889999999987665544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.029  Score=50.86  Aligned_cols=52  Identities=19%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             cCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       156 ~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ++....-+|+|+|+|+|.|+..+.+.+...      -+++-+|+++.+.+.-++++..
T Consensus        94 l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~------G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          94 MDINPGDTVLEAGSGSGGMSLFLSKAVGSQ------GRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HTCCTTCEEEEECCTTSHHHHHHHHHHCTT------CEEEEEESSHHHHHHHHHHHHH
T ss_pred             hCCCCCCEEEEecccccHHHHHHHHHhCCC------cEEEEecCCHHHHHHHHHHHHH
Confidence            454444699999999999999999887321      3688999999999888877754

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.03  Score=45.62  Aligned_cols=66  Identities=18%  Similarity=0.092  Sum_probs=42.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s  241 (310)
                      -+|+|+|||+|.++..+    .         +.+-||+||.+.+.-+++=.                      .+. ...
T Consensus        38 ~~vLDiGcG~G~~~~~~----~---------~~~giD~s~~~~~~a~~~~~----------------------~~~-~~d   81 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPL----K---------IKIGVEPSERMAEIARKRGV----------------------FVL-KGT   81 (208)
T ss_dssp             SCEEEETCTTSTTHHHH----T---------CCEEEESCHHHHHHHHHTTC----------------------EEE-ECB
T ss_pred             CeEEEECCCCccccccc----c---------eEEEEeCChhhccccccccc----------------------ccc-ccc
Confidence            37999999999876543    1         23678999999886555310                      010 111


Q ss_pred             cccCC--CCCCEEEEEeccccccc
Q 021589          242 LEQVP--SGFPTIIVAHEFYDALP  263 (310)
Q Consensus       242 leelp--~~~~~vIiANE~fDALP  263 (310)
                      .++++  .+..-+|+++.+|..+|
T Consensus        82 ~~~l~~~~~~fD~I~~~~~l~h~~  105 (208)
T d1vlma_          82 AENLPLKDESFDFALMVTTICFVD  105 (208)
T ss_dssp             TTBCCSCTTCEEEEEEESCGGGSS
T ss_pred             cccccccccccccccccccccccc
Confidence            22332  23346889999999987

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0074  Score=52.32  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=34.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      |.....+|+|+|||+|.+..  +..   .+.+   -+++.+|.|+.+.+.-++.+..
T Consensus        51 g~~~g~~vLDiGcG~g~~~~--~~~---~~~~---~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQL--LSA---CSHF---EDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGG--TTG---GGGC---SEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEeccCCCHHHH--HHh---cccC---CeEEEEeCCHHHHHHHHHHHhc
Confidence            55556799999999996532  111   1111   2699999999999988877754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=94.50  E-value=0.028  Score=47.77  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=32.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+|+|||+|..+..+.+.   ..     -+|+-||+|+.+.+.-+++..
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~---~~-----~~v~GiD~S~~~l~~A~~r~~   68 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERA---GI-----GEYYGVDIAEVSINDARVRAR   68 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHH---TC-----SEEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEecccCcHHHHHHHHc---CC-----CeEEEecCCHHHHHHHHHHHH
Confidence            58999999999865554432   11     269999999999887776654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.21  E-value=0.057  Score=45.65  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          136 EVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       136 eIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|+|--|+.|...+.     ...|  -+|+|+|+|.|.-+.-+++++..      .-+++.||++|...+..++.+..
T Consensus        39 ~i~~~~G~lL~~lv~-----~~kp--k~ILEiGt~~G~Sti~la~al~~------~g~v~sid~~~~~~~~a~~~~~~  103 (214)
T d2cl5a1          39 NVGDAKGQIMDAVIR-----EYSP--SLVLELGAYCGYSAVRMARLLQP------GARLLTMEMNPDYAAITQQMLNF  103 (214)
T ss_dssp             SCHHHHHHHHHHHHH-----HHCC--SEEEEECCTTSHHHHHHHTTCCT------TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH-----hhCC--CEEEEEccCchhHHHHHHHhCCC------ccEEEEEeccHHHHHHHHHHHHH
Confidence            567888887655442     2233  49999999999988877655421      24799999999999988877743

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.016  Score=48.72  Aligned_cols=59  Identities=14%  Similarity=0.122  Sum_probs=38.3

Q ss_pred             HHHHHHHHHc---CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          147 VWAMCLWEQM---GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       147 ~~~~~~w~~~---g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .|+.+.+.++   +.....+|+|+|||+|.++.-+.   .  +.   .-+++-||+|+.+.+.-++++..
T Consensus        35 ~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~---~--~~---~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          35 KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAA---C--DS---FQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             HHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTG---G--GT---EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHh---c--cc---cCcEEEecCCHHHHHHHHHHHhh
Confidence            3444444432   33345689999999997653111   1  11   12699999999999988877654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.78  E-value=0.049  Score=45.84  Aligned_cols=47  Identities=15%  Similarity=0.316  Sum_probs=34.7

Q ss_pred             CCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       157 g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      |.+.| .|+|||||+|..+..+..   .+|+    ..|+-||+++.....-.++.
T Consensus        27 ~~~~P-lvLeIGcG~G~~~~~lA~---~~p~----~~~iGiD~~~~~i~~a~~~~   73 (204)
T d2fcaa1          27 GNDNP-IHIEVGTGKGQFISGMAK---QNPD----INYIGIELFKSVIVTAVQKV   73 (204)
T ss_dssp             TSCCC-EEEEECCTTSHHHHHHHH---HCTT----SEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCc-eEEEEEecCcHHHHHHHH---hCCC----CcEEEeecchHHHHHHHHHH
Confidence            34444 699999999998887644   3565    47999999998876555444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.64  E-value=0.11  Score=47.72  Aligned_cols=109  Identities=17%  Similarity=0.226  Sum_probs=68.6

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhc-CcCc-----cccceEEEEecC
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK-FKNF-----TESLHIHLVECS  200 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~-~p~~-----~~~l~y~iVE~S  200 (310)
                      ..|-|+|+.+|..+.-+++           +.....+|+|-.||+|.|...++++++. ..+.     .....++-+|++
T Consensus       140 ~~G~f~TP~~Iv~~mv~ll-----------~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~  208 (425)
T d2okca1         140 GAGQYFTPRPLIQAMVDCI-----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  208 (425)
T ss_dssp             CCGGGCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             cchhhccchhhhHhhheec-----------cCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc
Confidence            3699999999876554432           2223468999999999999999999864 2211     122468999999


Q ss_pred             hhhHHHHHHhccccccCCcCccchhhhhcccCCCCeEEecccccCCCCCCEEEEEeccc
Q 021589          201 PTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFY  259 (310)
Q Consensus       201 P~Lr~~Q~e~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~f  259 (310)
                      +.....-+-.+.-....             .....+.+.++++.-+....-+||+|=.|
T Consensus       209 ~~~~~la~~n~~l~g~~-------------~~~~~i~~~d~l~~~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         209 PLVVTLASMNLYLHGIG-------------TDRSPIVCEDSLEKEPSTLVDVILANPPF  254 (425)
T ss_dssp             HHHHHHHHHHHHHTTCC-------------SSCCSEEECCTTTSCCSSCEEEEEECCCS
T ss_pred             HHHHHHHHhhhhhcCCc-------------cccceeecCchhhhhcccccceEEecCCC
Confidence            99988776554321100             01123445445544333334689998655

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=93.50  E-value=0.047  Score=44.41  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=43.3

Q ss_pred             cCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          133 TSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       133 TSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      |=|..+- -=|+|..|+...   .  +..-+|+|+|||+|.++...+..    .     .+.+.||.||...+..++++.
T Consensus        20 ~Rpt~~~-v~e~lf~~l~~~---~--~~g~~vLDl~~G~G~~~i~a~~~----g-----a~vv~vD~~~~a~~~~~~N~~   84 (171)
T d1ws6a1          20 ARPSPVR-LRKALFDYLRLR---Y--PRRGRFLDPFAGSGAVGLEAASE----G-----WEAVLVEKDPEAVRLLKENVR   84 (171)
T ss_dssp             CCCCCHH-HHHHHHHHHHHH---C--TTCCEEEEETCSSCHHHHHHHHT----T-----CEEEEECCCHHHHHHHHHHHH
T ss_pred             CCCCcHH-HHHHHHHHhhcc---c--cCCCeEEEeccccchhhhhhhhc----c-----chhhhcccCHHHHhhhhHHHH
Confidence            3444333 356666666432   2  22348999999999987544332    1     256789999999998887775


Q ss_pred             c
Q 021589          213 C  213 (310)
Q Consensus       213 ~  213 (310)
                      .
T Consensus        85 ~   85 (171)
T d1ws6a1          85 R   85 (171)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.37  E-value=0.068  Score=44.94  Aligned_cols=42  Identities=12%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             eEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhc
Q 021589          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL  211 (310)
Q Consensus       163 ~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L  211 (310)
                      .|||||||+|.++..+..   .+|+    ..++-||+++.....-.++.
T Consensus        34 lvLdIGcG~G~~~~~lA~---~~p~----~~~iGid~~~~~v~~a~~~~   75 (204)
T d1yzha1          34 IHVEVGSGKGAFVSGMAK---QNPD----INYIGIDIQKSVLSYALDKV   75 (204)
T ss_dssp             EEEEESCTTSHHHHHHHH---HCTT----SEEEEEESCHHHHHHHHHHH
T ss_pred             eEEEEeccCCHHHHHHHH---HCCC----CceEEEeccHHHHHHHHHhh
Confidence            689999999998776643   4565    47999999998665444433

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.13  E-value=0.36  Score=42.33  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccccccCCcCcc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDN  222 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~~~~~~~~~~  222 (310)
                      ++--+-+-.+.++++...--+|+|||||.|.+|..+.+..   +     ++++-|.+|+.-.+.-+++.....  +.+  
T Consensus        45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~---g-----~~v~git~s~~Q~~~a~~~~~~~g--~~~--  112 (285)
T d1kpga_          45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY---D-----VNVVGLTLSKNQANHVQQLVANSE--NLR--  112 (285)
T ss_dssp             HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH---C-----CEEEEEESCHHHHHHHHHHHHTCC--CCS--
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC---C-----cceEEEeccHHHHHHHHHHHHhhh--hhh--
Confidence            4433444445556665555699999999999998876642   2     479999999998776666554311  000  


Q ss_pred             chhhhhcccCCCCeEEecccccCCCCCCEEEEEecccccccce
Q 021589          223 VEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH  265 (310)
Q Consensus       223 ~~~~~~~~~~~~~v~W~~sleelp~~~~~vIiANE~fDALPvh  265 (310)
                                ...+.. .+..+++.. .-.|+|-|.|..++..
T Consensus       113 ----------~v~~~~-~d~~~~~~~-fD~i~si~~~eh~~~~  143 (285)
T d1kpga_         113 ----------SKRVLL-AGWEQFDEP-VDRIVSIGAFEHFGHE  143 (285)
T ss_dssp             ----------CEEEEE-SCGGGCCCC-CSEEEEESCGGGTCTT
T ss_pred             ----------hhHHHH-hhhhccccc-ccceeeehhhhhcCch
Confidence                      112222 223344443 3578999999999754

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.01  E-value=0.073  Score=43.38  Aligned_cols=43  Identities=16%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       159 p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      +..-+|+|.|||+|.|+..+++...      ....++.+|+.+.....+
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~------~~~~i~g~ei~~~~~~~~   60 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHG------TAYRFVGVEIDPKALDLP   60 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHC------SCSEEEEEESCTTTCCCC
T ss_pred             CCcCEEEECCCchHHHHHHHHHhcc------ccceEEeeecCHHHHhhc
Confidence            3445999999999999887766542      124689999998876543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.00  E-value=0.05  Score=43.22  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|+|||+|.++...+..-        +-+++.||.++...+.-++.+..
T Consensus        15 g~~vlDl~~GtG~~~iea~~rg--------a~~v~~ve~~~~a~~~~~~n~~~   59 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRG--------MSAAVLVEKNRKAQAIIQDNIIM   59 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTT--------CCEEEEECCCHHHHHHHHHHHHT
T ss_pred             CCeEEEcCCccCHHHHHHHHhC--------cceeeeehhchhhhhhhhhhhhh
Confidence            3599999999999987554321        12799999999999877776653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.089  Score=44.76  Aligned_cols=64  Identities=13%  Similarity=0.069  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       137 Is~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ++|.-|..|+.-+     ++-.|  -+|+|+|.|+|.=+.-+++++.      +.-+++.||.+|...+..++.+..
T Consensus        43 i~~~~g~lL~~L~-----~~~~~--k~vLEiGt~~GyStl~~a~al~------~~g~i~tie~~~~~~~~A~~~~~~  106 (219)
T d2avda1          43 MTCEQAQLLANLA-----RLIQA--KKALDLGTFTGYSALALALALP------ADGRVVTCEVDAQPPELGRPLWRQ  106 (219)
T ss_dssp             CCHHHHHHHHHHH-----HHTTC--CEEEEECCTTSHHHHHHHTTSC------TTCEEEEEESCSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH-----HccCC--CeEEEEechhhHHHHHHHHhCC------CCceEEEEeechhHHHHHHHHHHh
Confidence            3455455544322     33344  3999999999999988877652      224799999999999998888753

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.15  Score=43.98  Aligned_cols=47  Identities=11%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             CcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       160 ~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ...+++|+|+|+|..+.-+....   |+    .+++.+|+|+...+.-++.+..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~---~~----~~~~~~Di~~~al~~A~~N~~~  107 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL---NG----WYFLATEVDDMCFNYAKKNVEQ  107 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH---HC----CEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhC---CC----ccccceecCHHHHHHHHHHHHH
Confidence            45799999999999998776654   32    4799999999998887777653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.069  Score=46.86  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      -+|+|+|||+|.|+.-..+..        +-+++.||.|+.+...++
T Consensus        37 ~~VLDiGcG~G~lsl~aa~~G--------a~~V~aid~s~~~~~a~~   75 (311)
T d2fyta1          37 KVVLDVGCGTGILSMFAAKAG--------AKKVLGVDQSEILYQAMD   75 (311)
T ss_dssp             CEEEEETCTTSHHHHHHHHTT--------CSEEEEEESSTHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHcC--------CCEEEEEeCHHHHHHHHH
Confidence            489999999999877555431        126899999998765443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.74  E-value=0.22  Score=43.95  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=25.1

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhh
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL  203 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~L  203 (310)
                      -+|+|+|||+|.|+.-..+..        +-+++.||.|+.+
T Consensus        40 ~~VLDlGcGtG~ls~~aa~~G--------a~~V~avd~s~~~   73 (328)
T d1g6q1_          40 KIVLDVGCGTGILSMFAAKHG--------AKHVIGVDMSSII   73 (328)
T ss_dssp             CEEEEETCTTSHHHHHHHHTC--------CSEEEEEESSTHH
T ss_pred             CEEEEeCCCCCHHHHHHHHhC--------CCEEEEEeCCHHH
Confidence            389999999999976443321        1268999999854

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=90.85  E-value=0.25  Score=43.39  Aligned_cols=59  Identities=17%  Similarity=0.325  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      |+|..++...+...+.   ..++|+|+|+|..+..+..    +|+    .+++.+|+||.-.+.-+++..
T Consensus        96 E~lv~~~~~~~~~~~~---~~vld~g~GsG~i~~~la~----~~~----~~v~a~Dis~~Al~~A~~Na~  154 (271)
T d1nv8a_          96 EELVELALELIRKYGI---KTVADIGTGSGAIGVSVAK----FSD----AIVFATDVSSKAVEIARKNAE  154 (271)
T ss_dssp             HHHHHHHHHHHHHHTC---CEEEEESCTTSHHHHHHHH----HSS----CEEEEEESCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccc---cEEEEeeeeeehhhhhhhh----ccc----ceeeechhhhhHHHHHHHHHH
Confidence            6777777777766653   4899999999998876543    233    479999999998887776654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.2  Score=40.78  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       143 e~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      |+|..++....+      ..++++++||+|.++...|..-.        -+++.||.++...+.-++++..
T Consensus        32 e~lfn~l~~~~~------~~~vLDlfaGsG~~giealsrGa--------~~v~~VE~~~~a~~~~k~N~~~   88 (183)
T d2fpoa1          32 ETLFNWLAPVIV------DAQCLDCFAGSGALGLEALSRYA--------AGATLIEMDRAVSQQLIKNLAT   88 (183)
T ss_dssp             HHHHHHHHHHHT------TCEEEETTCTTCHHHHHHHHTTC--------SEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhcccc------hhhhhhhhccccceeeeEEecCc--------ceeEEEEEeechhhHHHHHHhh
Confidence            555566544321      24899999999999987654321        2689999999999877776643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.12  E-value=0.14  Score=45.04  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=27.0

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      -+|+|+|||+|.|+.-..+..        +-+++-||.|+.+...+
T Consensus        35 ~~VLDiGcG~G~ls~~aa~~G--------a~~V~avd~s~~~~~a~   72 (316)
T d1oria_          35 KVVLDVGSGTGILCMFAAKAG--------ARKVIGIECSSISDYAV   72 (316)
T ss_dssp             CEEEEETCTTSHHHHHHHHTT--------CSEEEEEECSTTHHHHH
T ss_pred             CEEEEEecCCcHHHHHHHHhC--------CCEEEEEcCcHHHhhhh
Confidence            389999999999876544321        12688999999764433

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=88.77  E-value=0.16  Score=45.46  Aligned_cols=62  Identities=16%  Similarity=0.292  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|=|+++.--+.     -.|.+-+|+.+|+|.|.+++.+|++.   +    ..++.+||+.|.+.+.-++.+.
T Consensus        61 ~~Yhe~l~h~~l~-----~~~~pk~VLiiG~G~G~~~~~ll~~~---~----~~~v~~VEiD~~Vi~~a~~~f~  122 (312)
T d1uira_          61 YIYHETLVHPAML-----THPEPKRVLIVGGGEGATLREVLKHP---T----VEKAVMVDIDGELVEVAKRHMP  122 (312)
T ss_dssp             HHHHHHHHHHHHH-----HSSCCCEEEEEECTTSHHHHHHTTST---T----CCEEEEEESCHHHHHHHHHHCH
T ss_pred             HHHHHHHhhhhhh-----hCCCcceEEEeCCCchHHHHHHHhcC---C----cceEEEecCCHHHHHHHHhcCc
Confidence            4577777643211     13445699999999999998887542   2    1479999999999998887774

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.18  E-value=0.63  Score=39.67  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             CChhHHHHHHHHHHH---H-HHHHHcC-CCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecC
Q 021589          135 PEVSQMFGEMVGVWA---M-CLWEQMG-QPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS  200 (310)
Q Consensus       135 peIs~~FGe~Ia~~~---~-~~w~~~g-~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S  200 (310)
                      |+....|....+.+-   . .+.+... .+..-+||++|+|+|+++..|++.   +|+    ++.++.|..
T Consensus        51 p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~---~P~----l~~~v~Dlp  114 (244)
T d1fp1d2          51 KKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISK---YPL----IKGINFDLP  114 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHH---CTT----CEEEEEECH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHH---CCC----CeEEEecch
Confidence            667777776554322   2 2333343 345568999999999999999875   565    478888864

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=87.42  E-value=0.52  Score=44.42  Aligned_cols=74  Identities=12%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CCCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcC-cCc----------cccceEE
Q 021589          127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKF-KNF----------TESLHIH  195 (310)
Q Consensus       127 ~~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~-p~~----------~~~l~y~  195 (310)
                      ..|-|||+.+|..+.-+++           ......+|++-.||+|.|.....+++... ...          .....++
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll-----------~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  210 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLL-----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  210 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHH-----------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             ccchhccccchhHhhhhcc-----------cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhh
Confidence            4599999999987655442           22223589999999999999999988642 211          1123688


Q ss_pred             EEecChhhHHHHHHhc
Q 021589          196 LVECSPTLQKLQHHNL  211 (310)
Q Consensus       196 iVE~SP~Lr~~Q~e~L  211 (310)
                      -+|+.+.+...-+-.+
T Consensus       211 G~E~~~~~~~la~~nl  226 (524)
T d2ar0a1         211 GLELVPGTRRLALMNC  226 (524)
T ss_dssp             EEESCHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHH
Confidence            9999999887666444

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.31  E-value=0.69  Score=39.23  Aligned_cols=46  Identities=15%  Similarity=0.063  Sum_probs=38.4

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      -+|+|+|.+.|.=+.-+.+++..      .-+++.+|.+|...+..++.+..
T Consensus        61 k~iLEiGT~~GyStl~la~al~~------~g~v~tie~~~~~~~~A~~~~~~  106 (227)
T d1susa1          61 KNTMEIGVYTGYSLLATALAIPE------DGKILAMDINKENYELGLPVIKK  106 (227)
T ss_dssp             CEEEEECCGGGHHHHHHHHHSCT------TCEEEEEESCCHHHHHHHHHHHH
T ss_pred             CcEEEecchhhhhHHHHHhhCCC------CcEEEEEeccchhHHHHHHHHHH
Confidence            49999999999999988887632      14799999999999998887753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=85.77  E-value=0.98  Score=38.06  Aligned_cols=61  Identities=13%  Similarity=0.278  Sum_probs=40.5

Q ss_pred             CChhHHHHHHHHHHHH----HHHHHcCC-CCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChh
Q 021589          135 PEVSQMFGEMVGVWAM----CLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT  202 (310)
Q Consensus       135 peIs~~FGe~Ia~~~~----~~w~~~g~-p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~  202 (310)
                      |+....|....+.+-.    .++..... ...-+||++|+|+|.++..|++.   +|+    ++.+++|..+.
T Consensus        51 p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~---~P~----l~~~v~Dlp~v  116 (243)
T d1kyza2          51 PRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSK---YPT----IKGINFDLPHV  116 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHH---CTT----SEEEEEECTTT
T ss_pred             HHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHH---CCC----CeEEEcccHHh
Confidence            5666777765544322    23333332 23358999999999999999875   565    57888887654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.64  E-value=1.3  Score=36.45  Aligned_cols=46  Identities=13%  Similarity=0.202  Sum_probs=39.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      .-.+|++++|+|..+..||..+   |+    .+++-+|.+|.+.+.-+++|..
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~---~~----~~vi~~D~d~~~l~~a~~~l~~   69 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHC---PG----CRIIGIDVDSEVLRIAEEKLKE   69 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHC---TT----CEEEEEESCHHHHHHHHHHTGG
T ss_pred             CCEEEEecCCCcHHHHHHHhcC---CC----CeEEEeechHHHHHHHHHhhcc
Confidence            3589999999999999999864   32    4799999999999988888865

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.21  E-value=0.4  Score=39.04  Aligned_cols=45  Identities=16%  Similarity=0.090  Sum_probs=36.3

Q ss_pred             cceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhccc
Q 021589          161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC  213 (310)
Q Consensus       161 ~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~~  213 (310)
                      ..+|+|++||+|.++...|..-        +-+++.||.++...+..++++..
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srG--------a~~v~~ve~~~~a~~~~~~N~~~   86 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRG--------MDKSICIEKNFAALKVIKENIAI   86 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTT--------CSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEcccccccccceeeecc--------hhHHHHHHHHHHHHHHHHHHhhh
Confidence            3599999999999998776542        13689999999999988877753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.81  E-value=0.75  Score=40.65  Aligned_cols=62  Identities=24%  Similarity=0.358  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -.|=|+++.--+..     .|.+-+|+-+|+|.|..++.+|++.   +    ..++.+||+.|...+.-++.+.
T Consensus        73 ~~YhE~l~h~pl~~-----~~~pk~VLiiGgG~G~~~r~~l~~~---~----~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          73 FMYHEMLAHVPMFL-----HPNPKKVLIIGGGDGGTLREVLKHD---S----VEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             HHHHHHHHHHHHHH-----SSSCCEEEEEECTTCHHHHHHTTST---T----CSEEEEEESCHHHHHHHHHHCH
T ss_pred             hhhhhhhcchhHhh-----CCCCceEEEecCCchHHHHHHHhcC---C----CceEEEecCCHHHHHHHHHHHH
Confidence            46777776543221     3455699999999999888887532   1    1379999999999998888764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=84.41  E-value=0.92  Score=39.45  Aligned_cols=73  Identities=21%  Similarity=0.352  Sum_probs=52.8

Q ss_pred             CCCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 021589          128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ  207 (310)
Q Consensus       128 ~GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q  207 (310)
                      .|++-++-.-...|-|+++.-.+..     .+.+-+|+-+|.|.|..++.+|++.    .   ..++.+||+.|...+.-
T Consensus        48 Dg~~q~~~~de~~Yhe~l~h~~l~~-----~~~p~~vLiiGgG~G~~~~~~l~~~----~---~~~i~~VEID~~Vi~~a  115 (274)
T d1iy9a_          48 DGMVMTSEKDEFVYHEMVAHVPLFT-----HPNPEHVLVVGGGDGGVIREILKHP----S---VKKATLVDIDGKVIEYS  115 (274)
T ss_dssp             TTEEEEETTTHHHHHHHHHHHHHHH-----SSSCCEEEEESCTTCHHHHHHTTCT----T---CSEEEEEESCHHHHHHH
T ss_pred             CCceeeecCchhhchhhhccchhhc-----cCCcceEEecCCCCcHHHHHHHhcC----C---cceEEEecCCHHHHHHH
Confidence            4666555444567888876654322     3445699999999999999887542    1   14799999999999988


Q ss_pred             HHhcc
Q 021589          208 HHNLK  212 (310)
Q Consensus       208 ~e~L~  212 (310)
                      ++.+.
T Consensus       116 ~~~~~  120 (274)
T d1iy9a_         116 KKFLP  120 (274)
T ss_dssp             HHHCH
T ss_pred             HHhCh
Confidence            88774

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.12  E-value=0.54  Score=40.94  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             CCeecCCChhHHHHHHHHHHHHHHHHHcCCCCcceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 021589          129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH  208 (310)
Q Consensus       129 GDFiTSpeIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~  208 (310)
                      |++-.+..---.|-|+++.-.+.     -.|.+-+|+-+|+|.|..+..+|++    +.    .++.+||+.|.+.+.-+
T Consensus        46 g~~q~~~~de~~Yhe~l~~~~l~-----~~~~p~~vLiiG~G~G~~~~~~l~~----~~----~~v~~VEiD~~Vi~~a~  112 (276)
T d1mjfa_          46 GTVQLVTLGERSYHEPLVHPAML-----AHPKPKRVLVIGGGDGGTVREVLQH----DV----DEVIMVEIDEDVIMVSK  112 (276)
T ss_dssp             TEEEEETTTTHHHHHHHHHHHHH-----HSSCCCEEEEEECTTSHHHHHHTTS----CC----SEEEEEESCHHHHHHHH
T ss_pred             CceeeeccchhHHHHHhhcchhh-----cCCCCceEEEecCCchHHHHHHHHh----CC----ceEEEecCCHHHHHHHH
Confidence            44443322234677776543221     1345569999999999988888642    21    36899999999999888


Q ss_pred             Hhcc
Q 021589          209 HNLK  212 (310)
Q Consensus       209 e~L~  212 (310)
                      +.+.
T Consensus       113 ~~f~  116 (276)
T d1mjfa_         113 DLIK  116 (276)
T ss_dssp             HHTC
T ss_pred             Hhhh
Confidence            7663

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.75  E-value=0.47  Score=40.99  Aligned_cols=43  Identities=19%  Similarity=0.179  Sum_probs=34.3

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      -+|+++|||.|.++..+++.-        +.+++-||+||...+.-++++.
T Consensus       109 ~~VlD~~aG~G~~~l~~a~~~--------~~~V~avd~n~~a~~~~~~N~~  151 (260)
T d2frna1         109 ELVVDMFAGIGHLSLPIAVYG--------KAKVIAIEKDPYTFKFLVENIH  151 (260)
T ss_dssp             CEEEETTCTTTTTHHHHHHHT--------CCEEEEECCCHHHHHHHHHHHH
T ss_pred             cEEEECcceEcHHHHHHHHhC--------CcEEEEecCCHHHHHHHHHHHH
Confidence            489999999999998776531        1368999999998887776664

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=81.44  E-value=1  Score=36.28  Aligned_cols=43  Identities=19%  Similarity=0.240  Sum_probs=34.7

Q ss_pred             ceEEEecCCchHHHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcc
Q 021589          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK  212 (310)
Q Consensus       162 l~IvElGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~SP~Lr~~Q~e~L~  212 (310)
                      .+++++-||+|.|+...|..-.        -+.++||.++...+.-++++.
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA--------~~v~fVE~~~~a~~~ik~Ni~   87 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQA--------KKVTFLELDKTVANQLKKNLQ   87 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--------SEEEEECSCHHHHHHHHHHHH
T ss_pred             ceEeecccCccceeeeeeeecc--------eeeEEeecccchhhhHhhHHh
Confidence            4899999999999988875431        268999999999887776654