Citrus Sinensis ID: 021631

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK
cccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHcccEEEEcccccccccccEEEEcEEEcccccEEEEEccccHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEEEEEEcccHHccccccccHHHHHHccccccccccccHHHccccccHHHHHHHHHHHcccccccEEEEEEcccccEEEEEEcccEEEEEEcccccccccc
ccccccccccEccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHEEcccccccccccEEEEcccccccccEEEEcHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEEEccccHHHHHHHHHHHHcccHcEEcccccEEEEEEEEEEEEEcccEEEEEccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEcccccEEEEEEcccccccccc
mktleapwpislfsrihvdktphsspmlrfchsttrlssftplsftlrrqlpmasfsaqavstgdvksdANVFELIQKHQEAaarlppleEIRTVLDRSVRGMLSTFsqkyegypsgsmvdfacdadgtpilAVSSLAVHtkdllanpkcsllvardpedrtDLVITLhgdatsvaEKDKAAIRAVYLakhpnafwvdfgdfqfmriepkAVRYVSGVATALlgsgefskeeyqaanvdpiaqfskpvashmnrdhaedTRIIVQHSTSIPVASAYMLDldslgfnvkagyqgntfklripfprraedrk
mktleapwpislFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHqeaaarlppleeIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITlhgdatsvaeKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAgyqgntfklripfprraedrk
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK
*******WPISLFSRIHVDK******MLRFCHSTTRLSSFTPLSFTLRRQLPMASF************DANVFELIQKHQ*AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSK*EYQAANV**I******************TRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPF********
******PWPISLFSRIHVDKTP********************************************************************EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAE***
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK
*****APWPISLFSRIHVDKTPHSSPMLRF**S*T*LSSFTPL*FT***********************ANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRR*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
224144803279 predicted protein [Populus trichocarpa] 0.819 0.910 0.850 1e-126
224125854289 predicted protein [Populus trichocarpa] 0.880 0.944 0.786 1e-125
297739764341 unnamed protein product [Vitis vinifera] 0.990 0.900 0.727 1e-124
225441609327 PREDICTED: uncharacterized protein LOC10 0.990 0.938 0.727 1e-124
255568904281 conserved hypothetical protein [Ricinus 0.825 0.911 0.832 1e-122
359806372326 uncharacterized protein LOC100793739 [Gl 0.874 0.831 0.769 1e-119
18396698321 FMN binding protein [Arabidopsis thalian 0.806 0.778 0.808 1e-117
30678976305 FMN binding protein [Arabidopsis thalian 0.806 0.819 0.808 1e-116
356560932329 PREDICTED: uncharacterized protein LOC10 0.819 0.772 0.785 1e-115
388518979328 unknown [Medicago truncatula] 0.970 0.917 0.683 1e-115
>gi|224144803|ref|XP_002325420.1| predicted protein [Populus trichocarpa] gi|222862295|gb|EEE99801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/254 (85%), Positives = 235/254 (92%)

Query: 57  SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPS 116
           S QAVSTGDV +DA+VF+LI+ HQE AARLPP+EEIRT+L++S RGMLSTFSQK+EGYPS
Sbjct: 8   SNQAVSTGDVNTDADVFQLIRTHQENAARLPPVEEIRTLLNQSTRGMLSTFSQKHEGYPS 67

Query: 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVA 176
           GSMVDFACDADG+PILAVSSLAVHTKDLLANPKCSLLVA+DPEDRTDLVITLHGDA  V+
Sbjct: 68  GSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLVAKDPEDRTDLVITLHGDAIPVS 127

Query: 177 EKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAA 236
           EKD  A+R  YLAKHP++FWVDFGDFQFMRIEPK VRYVSGVATALLGSGEFSKEEYQ A
Sbjct: 128 EKDITAVRTAYLAKHPDSFWVDFGDFQFMRIEPKVVRYVSGVATALLGSGEFSKEEYQTA 187

Query: 237 NVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTF 296
            VD IAQF+KPVASHMNRDHAEDTR+IVQHSTSI V SAYMLD+DSLGFNVKA YQG T+
Sbjct: 188 KVDLIAQFAKPVASHMNRDHAEDTRLIVQHSTSILVDSAYMLDMDSLGFNVKAAYQGKTY 247

Query: 297 KLRIPFPRRAEDRK 310
           KLRIPFPRRAEDRK
Sbjct: 248 KLRIPFPRRAEDRK 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125854|ref|XP_002319691.1| predicted protein [Populus trichocarpa] gi|222858067|gb|EEE95614.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739764|emb|CBI29946.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441609|ref|XP_002276799.1| PREDICTED: uncharacterized protein LOC100243555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568904|ref|XP_002525422.1| conserved hypothetical protein [Ricinus communis] gi|223535235|gb|EEF36912.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359806372|ref|NP_001240978.1| uncharacterized protein LOC100793739 [Glycine max] gi|255638932|gb|ACU19768.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18396698|ref|NP_566216.1| FMN binding protein [Arabidopsis thaliana] gi|21553937|gb|AAM63018.1| unknown [Arabidopsis thaliana] gi|222422814|dbj|BAH19395.1| AT3G03890 [Arabidopsis thaliana] gi|332640487|gb|AEE74008.1| FMN binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30678976|ref|NP_850509.1| FMN binding protein [Arabidopsis thaliana] gi|14190433|gb|AAK55697.1|AF378894_1 AT3g03890/F20H23_6 [Arabidopsis thaliana] gi|15450555|gb|AAK96455.1| AT3g03890/F20H23_6 [Arabidopsis thaliana] gi|332640488|gb|AEE74009.1| FMN binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356560932|ref|XP_003548740.1| PREDICTED: uncharacterized protein LOC100792427 [Glycine max] Back     alignment and taxonomy information
>gi|388518979|gb|AFK47551.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2079394321 AT3G03890 [Arabidopsis thalian 0.880 0.850 0.767 2.4e-108
TAIR|locus:2093005387 AT3G21140 [Arabidopsis thalian 0.687 0.550 0.307 1.2e-18
UNIPROTKB|Q60C03238 MCA0309 "Putative uncharacteri 0.683 0.890 0.293 4.6e-18
TAIR|locus:2017637392 AT1G51560 [Arabidopsis thalian 0.687 0.543 0.281 6.2e-15
TIGR_CMR|SPO_0465160 SPO_0465 "pyridoxamine 5'-phos 0.367 0.712 0.373 6.2e-12
TAIR|locus:2094741317 PGR7 "AT3G21200" [Arabidopsis 0.670 0.656 0.255 1e-07
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 215/280 (76%), Positives = 240/280 (85%)

Query:    38 SSFTPLSF-TLRRQ---LPMASF---SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLE 90
             +S + +SF T+RR+   L MAS    S+QAVS G   SD +VF+LIQ H+E AARL P+E
Sbjct:    26 ASISAVSFSTVRRRFSPLTMASAAQSSSQAVSYGSGNSDTDVFKLIQAHEEKAARLSPVE 85

Query:    91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKC 150
             EIRTVL+ S+ GMLSTFSQKYEGYPSGSMVDFACDADG+PILAVSSLAVHTKDLLANPKC
Sbjct:    86 EIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKC 145

Query:   151 SLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPK 210
             SLL+ARDPEDRT L ITLHGDA  V+EKD+AA+R+ YLAKHP AFWVDFGDF FMRIEPK
Sbjct:   146 SLLIARDPEDRTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRIEPK 205

Query:   211 AVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSI 270
              VRYVSGVATA LGSGEFSKEEYQAA VDPIAQ++KPV SHMN+DH EDT+ IV + TSI
Sbjct:   206 VVRYVSGVATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSI 265

Query:   271 PVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK 310
             PV SA MLDLDSLGFNVKA  QGNTFKLR+PFPRRA+DRK
Sbjct:   266 PVESALMLDLDSLGFNVKATLQGNTFKLRVPFPRRAQDRK 305
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2093005 AT3G21140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q60C03 MCA0309 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TAIR|locus:2017637 AT1G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0465 SPO_0465 "pyridoxamine 5'-phosphate oxidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIX1074
hypothetical protein (279 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 5e-20
pfam1061581 pfam10615, DUF2470, Protein of unknown function (D 8e-15
COG0748245 COG0748, HugZ, Putative heme iron utilization prot 3e-13
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 4e-10
TIGR04110168 TIGR04110, heme_HutZ, heme utilization protein Hut 4e-06
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 87  PPLEEI----RTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPILAVSS 136
           P  EE     RT++ R+  G LST S  +   G P G++V  +     D+ G P   ++ 
Sbjct: 1   PTREEAAKVARTLVHRADWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTD 60

Query: 137 LAVHTKDLLANPKCSLLVA-----------RDPEDRTDLVITLHGDATSVAEKDKAAIRA 185
           L    ++L  NP+ SL ++            DPED T   ITL G    V  +++   + 
Sbjct: 61  LDSTVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLKKVPSEERDFAKK 120

Query: 186 VYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217
            + ++HP+A  W+   +F F ++E + +  + G
Sbjct: 121 AFFSRHPDAKDWLPGHNFHFYKLEIENIYLLGG 153

Length = 167
>gnl|CDD|204534 pfam10615, DUF2470, Protein of unknown function (DUF2470) Back     alignment and domain information
>gnl|CDD|223819 COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|200361 TIGR04110, heme_HutZ, heme utilization protein HutZ Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 99.97
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.81
PF1061583 DUF2470: Protein of unknown function (DUF2470); In 99.73
KOG3374210 consensus Cellular repressor of transcription [Tra 99.7
PRK03467144 hypothetical protein; Provisional 99.68
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.52
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.47
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.43
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.43
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.32
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 99.14
COG3787145 Uncharacterized protein conserved in bacteria [Fun 98.98
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 98.94
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 98.92
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.74
COG3871145 Uncharacterized stress protein (general stress pro 98.5
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.49
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 98.27
PRK06733151 hypothetical protein; Provisional 98.23
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 98.18
COG5015132 Uncharacterized conserved protein [Function unknow 97.77
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.66
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 97.66
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 97.09
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 97.06
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 96.65
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 96.38
COG2808209 PaiB Transcriptional regulator [Transcription] 93.09
COG3576173 Predicted flavin-nucleotide-binding protein struct 89.37
PF04289177 DUF447: Protein of unknown function (DUF447); Inte 82.49
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=99.97  E-value=1.4e-31  Score=233.41  Aligned_cols=145  Identities=44%  Similarity=0.702  Sum_probs=112.0

Q ss_pred             CCCHHHHHHHHhcCCeEEEEeecC--CCCCceeEEEeeEE----EcCCCCEEEEecCCchHhhhhhcCCceEEEEeeC--
Q 021631           86 LPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARD--  157 (310)
Q Consensus        86 ~s~ae~aRtlL~~~~~~~LaTv~~--~~dG~P~~S~V~ya----~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~d--  157 (310)
                      ...|+.||+||+..++|+|+|++.  +.+|+|+++++.|+    .+.+|.|||+++.++.|++||++||||||+|...  
T Consensus         4 ~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~~   83 (170)
T PF13883_consen    4 EEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQG   83 (170)
T ss_dssp             T-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGGS
T ss_pred             HHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCCC
Confidence            445789999999999999999987  57899999999999    8889999999999999999999999999999863  


Q ss_pred             ---------CCCCcceEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-ccccc---CCeeEEEEEeeEEEEEecccccccC
Q 021631          158 ---------PEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALLG  224 (310)
Q Consensus       158 ---------p~~~~~~Rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a-~~~~~---~df~~~rL~p~~v~~v~GfG~a~~~  224 (310)
                               |.+++++||||.|++++|++++.+.++++|+++||++ .|.++   +||.||||+|++|+||||||++   
T Consensus        84 ~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~---  160 (170)
T PF13883_consen   84 GDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA---  160 (170)
T ss_dssp             SHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS----
T ss_pred             CcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc---
Confidence                     2334689999999999999888888999999999999 89999   9999999999999999999997   


Q ss_pred             CCCCCHHHHh
Q 021631          225 SGEFSKEEYQ  234 (310)
Q Consensus       225 ~~~v~~~dy~  234 (310)
                       +||+++||.
T Consensus       161 -~~i~~~~Y~  169 (170)
T PF13883_consen  161 -AWISAEEYY  169 (170)
T ss_dssp             -EEE-HHHHH
T ss_pred             -eEeCHHHhc
Confidence             589999996

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known Back     alignment and domain information
>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information
>PF04289 DUF447: Protein of unknown function (DUF447); InterPro: IPR007386 This entry contains archaeal and bacterial proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2arz_A247 Crystal Structure Of Protein Of Unknown Function Fr 2e-18
1vl7_A157 Crystal Structure Of A Putative Heme Oxygenase (Alr 7e-05
3dnh_A258 The Crystal Structure Of The Protein Atu2129 (Unkno 5e-04
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure 
Iteration: 1

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 115/219 (52%), Gaps = 22/219 (10%)
Query: 93  RTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSL 152
           R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+CS+
Sbjct: 13  RELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSM 72
Query: 153 LVA-RDPEDRTDLV-ITLHGDATSVAEKDKAAIRAVYLAKHP-NAFWVDFGDFQFMRIEP 209
           LV  R  ED   +  +TL  +A  +AE++ AA    Y    P +A +    DF F  ++P
Sbjct: 73  LVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQP 132
Query: 210 KAVRYVSGVATALLGSGEFSKEEYQAANVDPIA-----QFSKPVASHMNRDHAEDTRIIV 264
              R++ G          F    + AA   P+A     +  + +  HMN DHA      V
Sbjct: 133 VQWRFIGG----------FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYV 182
Query: 265 QHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFP 303
           + +     A+A +  +D+ GF+++ G QG  +   +PFP
Sbjct: 183 ELAGLPAHAAAQLAGIDTEGFHLRIG-QGLHW---LPFP 217
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027) From Nostoc Sp. Pcc 7120 At 1.50 A Resolution Length = 157 Back     alignment and structure
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown Function) From Agrobacterium Tumefaciens Str. C58 Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 1e-40
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 1e-36
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 7e-35
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 1e-27
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 4e-26
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 1e-12
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 2e-21
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 2e-11
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 1e-09
3ec6_A139 General stress protein 26; alpha-beta structure, s 3e-08
2hq7_A146 Protein, related to general stress protein 26(GS2 5e-06
1rfe_A162 Hypothetical protein RV2991; structural genomics, 1e-05
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 1e-05
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 1e-04
2fhq_A141 Putative general stress protein; alpha-beta struct 3e-04
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 9e-04
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
 Score =  141 bits (356), Expect = 1e-40
 Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 11/232 (4%)

Query: 82  AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHT 141
           A A    +   R VL  S    L+T      GYP  +  +   + DGTP    + L +H 
Sbjct: 22  AGAPFEAVRVARDVLHTSRTAALATLDPV-SGYPYTTATNIGIEPDGTPFFFAAGLTLHA 80

Query: 142 KDLLANPKCSLLVARDPED--RTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVD 198
           +++  + + S+ +A   +    T   +TL G A  +   +     A Y+A++P A  ++ 
Sbjct: 81  RNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 140

Query: 199 FGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAE 258
             D +  R+  + V+   G A     +   +      +  + +   ++  A+ +N    E
Sbjct: 141 LPDTRLYRLRTEGVQINGGPARN-ASNITPADLRTDLSGAEELMAAAESEATRLNAIKGE 199

Query: 259 DTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK 310
            +R+ V            +  +D  G ++ +     +   R+ F  R E  K
Sbjct: 200 ASRLAVLA--GAKTGRWKITSIDPDGIDLASA----SDLARLWFAERVETLK 245
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} Length = 139 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Length = 128 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.96
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.95
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.94
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.94
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.9
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.65
2hq7_A146 Protein, related to general stress protein 26(GS2 99.64
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.63
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.61
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.59
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.58
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.58
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.57
2fhq_A141 Putative general stress protein; alpha-beta struct 99.56
2re7_A134 Uncharacterized protein; general stress protein CO 99.54
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.51
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.48
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.48
2hti_A185 BH0577 protein; structural genomics, joint center 99.47
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.47
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.41
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 99.41
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.41
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.4
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 99.38
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.37
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.37
2qea_A160 Putative general stress protein 26; structural gen 99.36
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.31
2fur_A209 Hypothetical protein; structural genomics, joint c 99.3
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.29
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.25
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.17
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 99.15
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.04
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 99.02
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 98.99
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 98.97
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.82
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 98.82
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.79
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.73
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 98.24
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.13
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.01
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 97.71
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 97.58
3r5z_A145 Putative uncharacterized protein; split barrel-lik 97.55
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=1.1e-47  Score=353.90  Aligned_cols=205  Identities=20%  Similarity=0.329  Sum_probs=186.7

Q ss_pred             CCHHHHHHHHhcCCeEEEEeec-CCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCC-C-Ccc
Q 021631           87 PPLEEIRTVLDRSVRGMLSTFS-QKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPE-D-RTD  163 (310)
Q Consensus        87 s~ae~aRtlL~~~~~~~LaTv~-~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~-~-~~~  163 (310)
                      ..++.+|+||+++++|+|||++ .  +|.|++|+|+|++|++|.+||+++..++|++||++||||||+|.+++. + ...
T Consensus        27 ~~~~~ar~lL~~~~~g~LaTv~~~--dG~P~~s~v~y~~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~~~  104 (258)
T 3dnh_A           27 EAVRVARDVLHTSRTAALATLDPV--SGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTL  104 (258)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEECTT--TCCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGGGS
T ss_pred             HHHHHHHHHHHhCCEEEEEeccCC--CCceEEEEEEEEECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChhhC
Confidence            3478999999999999999998 6  999999999999998999999999999999999999999999987532 3 356


Q ss_pred             eEEEEEEEEEEeChhHHHHHHHHHHHhCCCC-cccccCCeeEEEEEeeEEEEEecccc-cccCCCCCCHHHHhh--cCCC
Q 021631          164 LVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVAT-ALLGSGEFSKEEYQA--ANVD  239 (310)
Q Consensus       164 ~Rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a-~~~~~~df~~~rL~p~~v~~v~GfG~-a~~~~~~v~~~dy~~--A~pD  239 (310)
                      +||+|.|+++.+++++.+.++++|+++||++ .|.+.+||.||||+|++++|++|||+ +    .||+++||.+  |+||
T Consensus       105 ~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~~df~l~rl~~~~v~~v~GFG~~a----~~v~~~d~~~~~a~~d  180 (258)
T 3dnh_A          105 PRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNA----SNITPADLRTDLSGAE  180 (258)
T ss_dssp             CEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHHTSSTTEEEEEEEEEEEEEEC----------CCCCHHHHSCCCTTCH
T ss_pred             CeEEEEEEEEEcCchHHHHHHHHHHHHCcChHHcccCCCeEEEEEEEeEEEEEcccCccc----ccCCHHHhcccCCCCc
Confidence            8999999999999888889999999999998 88899999999999999999999998 7    4899999999  8899


Q ss_pred             ccccccchhhhhhhccCHHHHHHHHHHhCCCCCCcEEEEeecCCCcEEEEeecCCcEEEEecCC
Q 021631          240 PIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFP  303 (310)
Q Consensus       240 pl~~~~~~il~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~vD~~G~dlr~~~~~~~~~~Ri~F~  303 (310)
                      ||+..+++||+|||+|| |++.+||+ +++.++++|+|++||++||+|+++    +.++||+|+
T Consensus       181 ~l~~~~~~ii~hmN~dH-d~l~~~~~-~~~~~~~~a~~~~vD~~G~dl~~~----~~~~Ri~F~  238 (258)
T 3dnh_A          181 ELMAAAESEATRLNAIK-GEASRLAV-LAGAKTGRWKITSIDPDGIDLASA----SDLARLWFA  238 (258)
T ss_dssp             HHHHHHHHHHHHHHTST-THHHHHHH-HTTCCCSSCEEEEEETTEEEEECS----SCEEEEECS
T ss_pred             hhHHHHHHHHHHHHhhH-HHHHHHHH-hCCCCCCcEEEEEEccCcCEEEEC----CEEEEeeCC
Confidence            99999999999999999 99999999 988888899999999999999983    479999999
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 4e-47
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 6e-34
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 5e-22
d2i02a1143 b.45.1.1 (A:5-147) General stress protein 26 {Nost 7e-05
d1rfea_160 b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobac 2e-04
d2hq9a1148 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {M 0.001
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  156 bits (395), Expect = 4e-47
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 12/224 (5%)

Query: 90  EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149
           +  R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+
Sbjct: 6   KNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPR 65

Query: 150 CSLLVARDPEDRTD--LVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMR 206
           CS+LV     +       +TL  +A  +AE++ AA    Y    P +  +    DF F  
Sbjct: 66  CSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWV 125

Query: 207 IEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQH 266
           ++P   R++ G      G+  +   E          +  + +  HMN DHA      V+ 
Sbjct: 126 LQPVQWRFIGG-----FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL 180

Query: 267 STSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRK 310
           +     A+A +  +D+ GF+++ G         +PFP    +  
Sbjct: 181 AGLPAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACGNPG 220
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143 Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160 Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 100.0
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.94
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.66
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.62
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.59
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.58
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.57
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.53
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.52
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.52
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.37
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.16
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.12
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.07
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 98.11
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 98.11
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 98.1
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 98.09
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 97.96
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 88.83
d2imla1189 Hypothetical protein AF1834 {Archaeoglobus fulgidu 84.98
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=5e-50  Score=363.03  Aligned_cols=213  Identities=30%  Similarity=0.479  Sum_probs=195.3

Q ss_pred             CHHHHHHHHhcCCeEEEEeecCCCCCceeEEEeeEEEcCCCCEEEEecCCchHhhhhhcCCceEEEEeeCCC-C-CcceE
Q 021631           88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPE-D-RTDLV  165 (310)
Q Consensus        88 ~ae~aRtlL~~~~~~~LaTv~~~~dG~P~~S~V~ya~d~dG~~~l~vs~~s~h~rNL~~dprvSl~V~~dp~-~-~~~~R  165 (310)
                      .++.||+||+++++|+|||++.+.+|+|++|+|+|++|++|.|||++|.++.|++||..||||||+|.+++. + ....|
T Consensus         4 ~a~~aR~ll~~~~~~~LsT~~~~~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~~~~~R   83 (238)
T d2arza1           4 AAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGR   83 (238)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECSSSTTCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCE
T ss_pred             HHHHHHHHHhhCCeEEEEecCCCCCCCceEEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCccccccccc
Confidence            378999999999999999998755699999999999999999999999999999999999999999987543 2 45679


Q ss_pred             EEEEEEEEEeChhHHHHHHHHHHHhCCCC-cccccCCeeEEEEEeeEEEEEecccccccCCCCCCHHHHhhcCCCccccc
Q 021631          166 ITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQF  244 (310)
Q Consensus       166 vtl~G~a~~v~~~e~~~l~~~y~~rhP~a-~~~~~~df~~~rL~p~~v~~v~GfG~a~~~~~~v~~~dy~~A~pDpl~~~  244 (310)
                      +++.|.++++++++.+.++++|+++||++ .|.+++||.||||+|++++|++|||+++    ||++++|..+.|++ ...
T Consensus        84 ~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~~~~~Df~~~~l~~~~~~~V~GFG~a~----~i~~~~~~~~~~~~-~~~  158 (238)
T d2arza1          84 LTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAIH----WLAAERVPLANPFA-GEA  158 (238)
T ss_dssp             EEEEEEEEECCHHHHHHHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTTCCEE----EEETTTSCCCCTTT-THH
T ss_pred             eeeeeeeEecCchHHHHHHHHHHHhccchhhhcccCcEEEEEEeeeEEEEEcCCCccc----cccHHHhhhccchh-hhh
Confidence            99999999999988889999999999999 8999999999999999999999999985    79999997766654 567


Q ss_pred             cchhhhhhhccCHHHHHHHHHHhCCCCCCcEEEEeecCCCcEEEEeecCCcEEEEecCCCCCCCC
Q 021631          245 SKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDR  309 (310)
Q Consensus       245 ~~~il~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~vD~~G~dlr~~~~~~~~~~Ri~F~~pv~d~  309 (310)
                      +++||+|||+||.|++..||+++++...++|+|++||++||+|+++    ...+||||++|++|+
T Consensus       159 ~~~ii~hmN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~l~~~----~~~~ri~F~~~~~~~  219 (238)
T d2arza1         159 ERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACGNP  219 (238)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHCCCCSSCCEEEEECSSEEEEEET----TEEEEEECSSCCCSH
T ss_pred             hHHHHhhcchhhHHHHHHHHHHhCCCCCCceEEEEEccCcCEEEEC----CEEEEEeCCCcCCCH
Confidence            8899999999999999999999998888899999999999999984    368999999999985
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure