Citrus Sinensis ID: 021643
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIZ3 | 589 | Probable methyltransferas | yes | no | 0.857 | 0.449 | 0.639 | 1e-100 | |
| Q9LYN3 | 610 | Probable methyltransferas | no | no | 0.851 | 0.431 | 0.588 | 2e-91 | |
| Q6NPR7 | 770 | Probable methyltransferas | no | no | 0.877 | 0.351 | 0.473 | 1e-76 | |
| Q0WT31 | 770 | Probable methyltransferas | no | no | 0.870 | 0.349 | 0.466 | 1e-74 | |
| Q8L7V3 | 829 | Probable methyltransferas | no | no | 0.877 | 0.326 | 0.461 | 5e-73 | |
| Q9SD39 | 895 | Probable methyltransferas | no | no | 0.844 | 0.291 | 0.460 | 4e-72 | |
| Q9LN50 | 724 | Probable methyltransferas | no | no | 0.893 | 0.381 | 0.452 | 3e-70 | |
| O22285 | 694 | Probable methyltransferas | no | no | 0.786 | 0.350 | 0.418 | 1e-53 | |
| Q93YV7 | 608 | Probable methyltransferas | no | no | 0.779 | 0.396 | 0.450 | 2e-53 | |
| Q9FG39 | 682 | Probable methyltransferas | no | no | 0.773 | 0.350 | 0.416 | 3e-53 |
| >sp|Q9SIZ3|PMTN_ARATH Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/269 (63%), Positives = 206/269 (76%), Gaps = 4/269 (1%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVP 99
MV+LT+S+CWK V ++VDS+ IG VIYQKP S SCY R PPLCD K N SW+VP
Sbjct: 323 MVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCD-KKEANGSWYVP 381
Query: 100 LSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGG 159
L+ C+S+LP+ GN+ SWP WP+RL S P E KDT W A VSDVY+
Sbjct: 382 LAKCLSKLPS---GNVQSWPELWPKRLVSVKPQSISVKAETLKKDTEKWSASVSDVYLKH 438
Query: 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWC 219
LA+NWS+VRNVMDMNA +GGFAAALI+ PLWVMNVVP+D PDTLS+++DRGLIG+YHDWC
Sbjct: 439 LAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWC 498
Query: 220 ESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 279
ES NTYPRTYDLLHSSFLL D+TQRC+I V E+DRI+RPGGY++VQD +E I KL+ +
Sbjct: 499 ESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESI 558
Query: 280 LHSLQWSTNIYHDQFLVGKKGFWRPTGGE 308
L SL WST IY D+FLVG+KGFWRP E
Sbjct: 559 LGSLHWSTKIYEDRFLVGRKGFWRPAKPE 587
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9LYN3|PMTM_ARATH Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/270 (58%), Positives = 205/270 (75%), Gaps = 7/270 (2%)
Query: 38 AAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLC-DGKNNLNSSW 96
M +LT SMCWK VAR+ ++GFVIYQKP S SCY++R+ PPLC + + NSSW
Sbjct: 345 KTMESLTTSMCWKVVART-RFTKVGFVIYQKPDSDSCYESRKNKDPPLCIEEETKKNSSW 403
Query: 97 HVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSL--PPDSEEAFNKDTTHWYALVSD 154
+ PL C+ +LP G WP+ WP+RL+ P SL SEE+F +D+ W ++S+
Sbjct: 404 YTPLLTCLPKLPVSPIGK---WPSGWPERLTETPVSLFREQRSEESFREDSKLWSGVMSN 460
Query: 155 VYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGM 214
+Y+ LAINW+ + NVMDMNA YGGFAAALI++PLWVMNV+P++ DTLS IFDRGLIG+
Sbjct: 461 IYLYSLAINWTRIHNVMDMNAGYGGFAAALINKPLWVMNVIPVEGEDTLSTIFDRGLIGI 520
Query: 215 YHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMIN 274
YHDWCESFNTYPR+YDLLHSSFL ++++QRCD+ +V VE+DRILRPGGY+ VQDT+EM+
Sbjct: 521 YHDWCESFNTYPRSYDLLHSSFLFTNLSQRCDLMEVVVEIDRILRPGGYLAVQDTVEMLK 580
Query: 275 KLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 304
KL P+L SL+WSTN+Y +FLVG K WRP
Sbjct: 581 KLNPILLSLRWSTNLYRGKFLVGLKSSWRP 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NPR7|PMTO_ARATH Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 134/283 (47%), Positives = 183/283 (64%), Gaps = 12/283 (4%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM LT++MCW+ + D N +G IYQKP+S CY R +N PPLC ++ N++W+
Sbjct: 482 AMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWN 541
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPD-------SEEAFNKDTTHWYA 150
VPL CI ++ DS WP WP+R+ + P L ++E F D W
Sbjct: 542 VPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKT 601
Query: 151 LVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG 210
+VS Y+ G+ I+WS VRNVMDM A YGGFAAAL D LWVMNVVPID+PDTL II++RG
Sbjct: 602 IVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERG 661
Query: 211 LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270
L G+YHDWCESF+TYPRTYDLLH+ L S + +RC++ V E+DRILRP G +V+D +
Sbjct: 662 LFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDM 721
Query: 271 EMINKLKPVLHSLQWSTNIYHDQ----FLVGKKGFWRPTGGET 309
E I +++ ++ S++W+ + H + L +K +WRPT ET
Sbjct: 722 ETIGEIEKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAET 764
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana GN=At2g34300 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 133/285 (46%), Positives = 180/285 (63%), Gaps = 16/285 (5%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM LT++MCWK V D N +G IYQKP S CY R +N PPLC ++ N++W+
Sbjct: 482 AMSELTKAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWN 541
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEA---------FNKDTTHW 148
VPL C+ ++ DS WP WP+R+ + P L DS+E F D W
Sbjct: 542 VPLEACMHKVTEDSSKRGAVWPNMWPERVETAPEWL--DSQEGVYGKPAPEDFTADQEKW 599
Query: 149 YALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD 208
+VS Y+ + I+WS+VRNVMDM A YGGFAAAL D LWVMNVVP+DAPDTL II++
Sbjct: 600 KTIVSKAYLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYE 659
Query: 209 RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268
RGL G+YHDWCESFNTYPRTYDLLH+ L S + +RC++ V E+DRILRP G +++D
Sbjct: 660 RGLFGIYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRD 719
Query: 269 TLEMINKLKPVLHSLQWSTNIYHDQ----FLVGKKGFWRPTGGET 309
+E + +++ ++ S++W + + L +K +WRP ET
Sbjct: 720 DMETLGEVEKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETET 764
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 131/284 (46%), Positives = 179/284 (63%), Gaps = 13/284 (4%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM L + MCW+ V+ + D+ N +G Y+KP S CYKNR E PP+C ++ N+SW
Sbjct: 540 AMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNASWK 599
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPD--------SEEAFNKDTTHWY 149
VPL C+ P D WP WP RL P L + E F+ D HW
Sbjct: 600 VPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWK 659
Query: 150 ALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR 209
+V+ Y+ GL INW+SVRNVMDM A YGGFAAAL D +WVMNVVPID+PDTL+II++R
Sbjct: 660 RVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYER 719
Query: 210 GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269
GL G+YHDWCESF+TYPR+YDLLH+ L S + QRC++ V E+DR+LRP G ++V+D
Sbjct: 720 GLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDD 779
Query: 270 LEMINKLKPVLHSLQWSTNIYHDQFLVG----KKGFWRPTGGET 309
E I +++ ++ +++W + + + G +K WRP+ ET
Sbjct: 780 AETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVET 823
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SD39|PMTR_ARATH Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 180/282 (63%), Gaps = 21/282 (7%)
Query: 40 MVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
M LT+S+CW+ V + D N IG IYQKP + CY+ R+ N PPLC ++ N++W+V
Sbjct: 614 MSALTKSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDANAAWYV 673
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKP------------PSLPPDSEEAFNKDTT 146
PL C+ ++PT+ WP WP+RL + P P D F D
Sbjct: 674 PLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRD----FTTDYE 729
Query: 147 HWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII 206
HW +VS VY+ + I+WS+VRNVMDM A YGGFAAAL D +WVMNVV I++PDTL II
Sbjct: 730 HWKHVVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPII 789
Query: 207 FDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266
++RGL G+YHDWCESF+TYPR+YDLLH+ L S + RC++ V E+DRI+RPGG ++V
Sbjct: 790 YERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIV 849
Query: 267 QDTLEMINKLKPVLHSLQWSTNI----YHDQFLVGKKGFWRP 304
+D +I +++ +L SL W ++ + + L +KGFWRP
Sbjct: 850 RDESNVIREVENMLKSLHWDVHLTFSKHQEGILSAQKGFWRP 891
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LN50|PMTS_ARATH Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 183/285 (64%), Gaps = 9/285 (3%)
Query: 26 LSSFNVHIRFSLAAMVNLTESMCWKAVA-RSVDSNRIGFVIYQKPVSYSCYKNREENTPP 84
LSS N I AM LT S+CW +A ++ +++ +G IYQKP S Y+ R + PP
Sbjct: 443 LSSNNDKIEDD-EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPP 501
Query: 85 LCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKD 144
LC+ N +++W+VP+ CI +P+ + + WP WP+RL + P L S+E +D
Sbjct: 502 LCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLT--SKEKAMED 559
Query: 145 TTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLS 204
T HW A+V+ Y+ GL I+W +RNVMDM A YGGF A+L+ Q +WVMNVVP+ +PDTL
Sbjct: 560 TNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLP 619
Query: 205 IIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGY 263
I++RGL+G+YHDWCE F TYPR+YDLLH+ L S + RC A + VEMDR+ RPGG+
Sbjct: 620 FIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGW 679
Query: 264 VLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----FLVGKKGFWRP 304
V+V+D +E++ L+ +L SL W + + Q L +K WRP
Sbjct: 680 VVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/258 (41%), Positives = 164/258 (63%), Gaps = 15/258 (5%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFV-IYQKPVSYSCYKNREENT-PPLCDGKNNLNSSWH 97
M+NLT S+CWK V + G+V I+QKP + CY +RE T PPLCD ++ ++ W+
Sbjct: 421 MLNLTISLCWKLVKKE------GYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWY 474
Query: 98 VPLSNCISRLPTDS-KGNLHSWPAPW---PQRLSSKPPSLPPDSEEAFNKDTTHWYALVS 153
L CISR+P GN+ WPA P RL + +E F ++ +W ++
Sbjct: 475 TNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG 534
Query: 154 DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAPDTLSIIFDRGL 211
YV L +RNV+DM A +GGFAAAL D L WV++VVP+ P+TL +I+DRGL
Sbjct: 535 G-YVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 212 IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271
+G+ HDWCE F+TYPRTYD LH+S L S +RC+++ + +EMDRILRPGG ++D+++
Sbjct: 594 LGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSID 653
Query: 272 MINKLKPVLHSLQWSTNI 289
++++++ + ++ W T++
Sbjct: 654 VMDEIQEITKAMGWHTSL 671
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/253 (45%), Positives = 154/253 (60%), Gaps = 12/253 (4%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHV 98
M L E MCWK A+ R VI+QKP++ CY RE T PPLC N+ ++ W V
Sbjct: 326 MSALVERMCWKIAAK-----RNQTVIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGV 380
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPP--DSEEAFNKDTTHWYALVSDVY 156
+ CI+ S APWP RL+S PP L S F KDT W V D Y
Sbjct: 381 NMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRV-DTY 439
Query: 157 VGGLA--INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGM 214
L+ I +VRN+MDM AS G FAAAL ++ +WVMNVVP D P+TL +I+DRGL+G
Sbjct: 440 WDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGA 499
Query: 215 YHDWCESFNTYPRTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTLEMI 273
H WCE+F+TYPRTYDLLH+ ++SD+ ++ C D+ +EMDRILRP G+++++D ++
Sbjct: 500 VHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVV 559
Query: 274 NKLKPVLHSLQWS 286
+ +K L +L W
Sbjct: 560 DFVKKYLKALHWE 572
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FG39|PMTC_ARATH Probable methyltransferase PMT12 OS=Arabidopsis thaliana GN=At5g06050 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 172/262 (65%), Gaps = 23/262 (8%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFV-IYQKPVSYSCYKNREEN-TPPLCDGKNNLNSSWH 97
M+NLT +CW V + G++ I+QKPV+ +CY +R +PPLC+ +++ ++ W+
Sbjct: 393 MLNLTTRLCWVLVKKE------GYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWY 446
Query: 98 VPLSNCISRLPTDSKG-NLHSWPAPWPQRLSSKPPSLPP---DS----EEAFNKDTTHWY 149
V L CI+R+ + G NL APWP RL + P L DS +E F ++ +W
Sbjct: 447 VDLKACITRIEENGYGANL----APWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWK 502
Query: 150 ALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAPDTLSIIF 207
++S+ YV L +RNV+DM A +GGFAAAL + + WV+NV+P+ P+TL +I+
Sbjct: 503 EIISN-YVNALHWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIY 561
Query: 208 DRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267
DRGL+G+ HDWCE F+TYPRTYDLLH++ L S +RC++ + +EMDRILRPGG V ++
Sbjct: 562 DRGLLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIR 621
Query: 268 DTLEMINKLKPVLHSLQWSTNI 289
DT+ + ++L+ + ++++W T++
Sbjct: 622 DTINVTSELQEIGNAMRWHTSL 643
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| 225448534 | 606 | PREDICTED: probable methyltransferase PM | 0.864 | 0.440 | 0.743 | 1e-116 | |
| 356501216 | 595 | PREDICTED: probable methyltransferase PM | 0.864 | 0.448 | 0.691 | 1e-110 | |
| 224109268 | 514 | predicted protein [Populus trichocarpa] | 0.860 | 0.517 | 0.705 | 1e-109 | |
| 449460888 | 590 | PREDICTED: probable methyltransferase PM | 0.860 | 0.450 | 0.671 | 1e-108 | |
| 356553765 | 595 | PREDICTED: probable methyltransferase PM | 0.867 | 0.450 | 0.670 | 1e-106 | |
| 357492789 | 617 | hypothetical protein MTR_5g083150 [Medic | 0.864 | 0.432 | 0.661 | 1e-105 | |
| 255559511 | 603 | ATP binding protein, putative [Ricinus c | 0.864 | 0.442 | 0.665 | 1e-105 | |
| 356538003 | 594 | PREDICTED: probable methyltransferase PM | 0.860 | 0.447 | 0.657 | 1e-103 | |
| 297827657 | 593 | dehydration-responsive family protein [A | 0.860 | 0.448 | 0.636 | 2e-99 | |
| 18405331 | 589 | putative methyltransferase PMT23 [Arabid | 0.857 | 0.449 | 0.639 | 7e-99 |
| >gi|225448534|ref|XP_002273466.1| PREDICTED: probable methyltransferase PMT23 [Vitis vinifera] gi|297736564|emb|CBI25435.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 200/269 (74%), Positives = 228/269 (84%), Gaps = 2/269 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMVN+T+S+CWK VA++VD N IG VIYQKPVS SCY+ R+EN PP+CD K+ N SW+V
Sbjct: 338 AMVNVTKSICWKVVAKTVDLNGIGLVIYQKPVSSSCYEKRKENNPPMCDIKDKKNISWYV 397
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLP--PDSEEAFNKDTTHWYALVSDVY 156
PL CI +LP DS GN +WP WPQRLSSKP SLP PD+E+ F +DT HW ALVSDVY
Sbjct: 398 PLDGCIPQLPADSMGNSQNWPVSWPQRLSSKPLSLPTEPDAEQMFYEDTKHWSALVSDVY 457
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ GLA+NWSS+RNVMDMNA YGGFAAALIDQP+WVMNVVPI PDTLS+IFDRGLIG YH
Sbjct: 458 LEGLAVNWSSIRNVMDMNAGYGGFAAALIDQPVWVMNVVPIHVPDTLSVIFDRGLIGTYH 517
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCES NTYPRTYDLLHSSFLL ++TQRCDI DVAVEMDRILRPGG++LVQDT+E+I+KL
Sbjct: 518 DWCESSNTYPRTYDLLHSSFLLGNLTQRCDIIDVAVEMDRILRPGGWLLVQDTIEIIDKL 577
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPT 305
PVLHSL WST +Y QFLVGKK FWRPT
Sbjct: 578 SPVLHSLHWSTTLYQGQFLVGKKDFWRPT 606
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501216|ref|XP_003519422.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/269 (69%), Positives = 220/269 (81%), Gaps = 2/269 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV++T++MCWK VA+ DS+ IG VIYQKP S SCY+ REEN PPLC+ K+ N SW+
Sbjct: 325 AMVDITKAMCWKVVAKGHDSSGIGLVIYQKPTSSSCYEKREENNPPLCENKDGKNISWYA 384
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSE--EAFNKDTTHWYALVSDVY 156
L +C++ LP D KGNL SWP PWPQRL+SKPPSLP DS+ + F KD+ W LVSDVY
Sbjct: 385 RLDSCLTPLPVDGKGNLQSWPKPWPQRLTSKPPSLPTDSDAKDKFFKDSKRWSELVSDVY 444
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ GL+I WSSVRNVMDMNA Y GFAAALID P+WVMNVVPID PDTLSII DRGLIGMYH
Sbjct: 445 MNGLSIKWSSVRNVMDMNAGYAGFAAALIDLPVWVMNVVPIDVPDTLSIIMDRGLIGMYH 504
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCESFNTYPRTYDLLH+SFL + QRCDI DVAVE+DRILRP GY++VQD++E++NKL
Sbjct: 505 DWCESFNTYPRTYDLLHASFLFKYLEQRCDIVDVAVEIDRILRPNGYLVVQDSVEILNKL 564
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPT 305
P+L SL WS ++ +QFLVG+KGFWRPT
Sbjct: 565 NPILRSLNWSVTLHQNQFLVGRKGFWRPT 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109268|ref|XP_002315142.1| predicted protein [Populus trichocarpa] gi|222864182|gb|EEF01313.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 189/268 (70%), Positives = 220/268 (82%), Gaps = 2/268 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
+MV LT+S+CWK VA++VDS+ IG VIYQKPVS SCY+ R+E+ PPLC+ ++ N+ W+V
Sbjct: 246 SMVALTKSICWKVVAKTVDSSGIGLVIYQKPVSSSCYEKRQESNPPLCEQQDEKNAPWYV 305
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLP--PDSEEAFNKDTTHWYALVSDVY 156
PLS C+ RLP DS GNL WP WP R+SSKPPSL D+EE F +DT HW +LVSDVY
Sbjct: 306 PLSGCLPRLPVDSMGNLVGWPTQWPDRISSKPPSLTTLSDAEEMFIEDTKHWASLVSDVY 365
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ G AINWSSVRN+MDMNA YGGFAAALID P WVMNVVP DTL IIFDRGLIG+YH
Sbjct: 366 LDGPAINWSSVRNIMDMNAGYGGFAAALIDLPYWVMNVVPTHTEDTLPIIFDRGLIGIYH 425
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCES NTYPRTYDLLH+SFL ++TQRCDI DVAVEMDRILRPGGY+LVQDT+EM+NKL
Sbjct: 426 DWCESLNTYPRTYDLLHASFLFRNLTQRCDIIDVAVEMDRILRPGGYILVQDTMEMVNKL 485
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRP 304
VL S+QWST++Y QFLVG KGFWRP
Sbjct: 486 NSVLRSMQWSTSLYQGQFLVGNKGFWRP 513
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460888|ref|XP_004148176.1| PREDICTED: probable methyltransferase PMT23-like [Cucumis sativus] gi|449507782|ref|XP_004163128.1| PREDICTED: probable methyltransferase PMT23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 180/268 (67%), Positives = 215/268 (80%), Gaps = 2/268 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV LT+SMCWK V ++ DS+ +G VIYQKP S SCY+ R EN PP+CD KN N+SW+
Sbjct: 323 AMVLLTKSMCWKVVKKTSDSSGVGLVIYQKPTSTSCYEERSENDPPICDEKNKRNNSWYA 382
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPP--SLPPDSEEAFNKDTTHWYALVSDVY 156
PL+ CIS+LP D+KG +WP+PWPQRL+SKPP S+ P +EE F +DT W +VSDVY
Sbjct: 383 PLTRCISQLPVDNKGQYFNWPSPWPQRLTSKPPRLSVEPSAEEKFLEDTKQWSTVVSDVY 442
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ + +NWS+VRNV+DMNA YGGFAAALID PLWVMNVVPID PDTLSIIFDRGLIG+YH
Sbjct: 443 LDKIGVNWSTVRNVLDMNAGYGGFAAALIDLPLWVMNVVPIDEPDTLSIIFDRGLIGLYH 502
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCESFNTYPRTYDLLHSSFL + + +RCD+ VEMDRILRPGGYVL++D +E I L
Sbjct: 503 DWCESFNTYPRTYDLLHSSFLFTSLKKRCDVVATVVEMDRILRPGGYVLIRDNMEAIKVL 562
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRP 304
+ HSLQWS ++Y DQ LVGKKGFWRP
Sbjct: 563 GSIFHSLQWSVSVYQDQLLVGKKGFWRP 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553765|ref|XP_003545223.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 214/270 (79%), Gaps = 2/270 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV++T++MCWK VA+ DS+ IG VIYQKP S SCY+ RE N PPLC+ K+ NSSW+
Sbjct: 325 AMVDITKAMCWKVVAKGHDSSGIGLVIYQKPTSSSCYEKREGNNPPLCENKDGKNSSWYA 384
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSE--EAFNKDTTHWYALVSDVY 156
L +C++ LP D GNL SWP PWPQRL+SKPPSLP DS+ + F KD+ W LVSD Y
Sbjct: 385 RLDSCLTPLPVDGMGNLQSWPKPWPQRLTSKPPSLPTDSDAKDKFFKDSKRWSELVSDFY 444
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ GL+I WSSVRNVMDMNA Y GFA ALID P+WVMNVVPID PDTLSII DRG IGMYH
Sbjct: 445 MNGLSIKWSSVRNVMDMNAGYAGFATALIDLPVWVMNVVPIDVPDTLSIIMDRGFIGMYH 504
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCESFNTYPRTYDLLHSSFL + QRCDI DVAVE+DRILRP GY++VQD++E++NKL
Sbjct: 505 DWCESFNTYPRTYDLLHSSFLFKYLEQRCDIVDVAVEIDRILRPNGYLVVQDSMEILNKL 564
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPTG 306
+L SL WS ++ +QFLVG+KG WRP G
Sbjct: 565 ISILRSLHWSVTLHQNQFLVGRKGLWRPKG 594
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357492789|ref|XP_003616683.1| hypothetical protein MTR_5g083150 [Medicago truncatula] gi|355518018|gb|AES99641.1| hypothetical protein MTR_5g083150 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/269 (66%), Positives = 215/269 (79%), Gaps = 2/269 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV +T++MCWK VA++ DS+ IG VIYQKP S SCY+ R EN PPLC+ + NSSW+
Sbjct: 345 AMVAITKAMCWKVVAKADDSSGIGLVIYQKPTSSSCYEKRTENNPPLCENADGKNSSWYA 404
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSE--EAFNKDTTHWYALVSDVY 156
L++C++ LP D KG SWP PWPQRL+SKPPSLP DS+ + FNKD+ W LVS+VY
Sbjct: 405 RLNSCLTPLPVDGKGKPQSWPMPWPQRLTSKPPSLPNDSDATDEFNKDSNRWSQLVSNVY 464
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
GL+INWSSVRNVMDMNA Y GFAA+LID+P+WVMNVVPID PDTLSII DRGLIGMYH
Sbjct: 465 ADGLSINWSSVRNVMDMNAGYAGFAASLIDRPIWVMNVVPIDVPDTLSIILDRGLIGMYH 524
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCESFNTYPRTYDLLH+SFL + QRC + DV VE+DRILRP GY+++ D++EM+NKL
Sbjct: 525 DWCESFNTYPRTYDLLHASFLFKYLEQRCGLVDVIVEIDRILRPDGYLVIHDSMEMLNKL 584
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPT 305
P L SL WS ++ +QFLVG+K FWRPT
Sbjct: 585 SPTLRSLHWSVKLHQNQFLVGRKSFWRPT 613
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559511|ref|XP_002520775.1| ATP binding protein, putative [Ricinus communis] gi|223539906|gb|EEF41484.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/269 (66%), Positives = 217/269 (80%), Gaps = 2/269 (0%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV LT SMCWK V +++DS+ IG VIYQKPV SCY+ R+EN PPLCD K+ N SW+V
Sbjct: 335 AMVALTNSMCWKNVTKTMDSSGIGLVIYQKPVLPSCYEKRQENDPPLCDQKDTQNVSWYV 394
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSL--PPDSEEAFNKDTTHWYALVSDVY 156
P++ C+SRLP DS+GN SWPA WP RL++ PPSL D+ E F +DT HW LVSDVY
Sbjct: 395 PINRCLSRLPMDSQGNAMSWPAGWPYRLNTVPPSLLTGSDAVEIFYEDTRHWSVLVSDVY 454
Query: 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYH 216
+ AINW+SVRN+MDMNA YGGFAAAL+D P WVMNVVP D+ DTL +I DRGLIG+YH
Sbjct: 455 LNAPAINWTSVRNIMDMNAGYGGFAAALVDLPYWVMNVVPFDSQDTLPVILDRGLIGIYH 514
Query: 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
DWCESFNTYPRTYDLLHSSFL ++TQRCDI +V E+DRI+RPGGYV++QDT+EMI KL
Sbjct: 515 DWCESFNTYPRTYDLLHSSFLFKNLTQRCDIIEVVAEIDRIVRPGGYVVIQDTMEMIQKL 574
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPT 305
+L SL+WST++Y QFL+G+KGFWRP+
Sbjct: 575 SSMLSSLRWSTSLYQGQFLIGRKGFWRPS 603
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538003|ref|XP_003537495.1| PREDICTED: probable methyltransferase PMT23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/269 (65%), Positives = 214/269 (79%), Gaps = 3/269 (1%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLN-SSWH 97
AMV +T++MCW VA+++DS+ IG VIYQKP S CY+ R+E TPPLC+ + + SSW+
Sbjct: 324 AMVTVTKAMCWTVVAKTLDSSGIGLVIYQKPTSTFCYQERKERTPPLCETSDRKSISSWY 383
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSL--PPDSEEAFNKDTTHWYALVSDV 155
LS+C+ LP D++GNL SWP PWP+RL+S PPSL D+ E F KDT HW LVSDV
Sbjct: 384 TKLSSCLIPLPVDAEGNLQSWPMPWPERLTSIPPSLSIESDASEMFLKDTKHWSELVSDV 443
Query: 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMY 215
Y GL++NWSSVRN+MDMNA Y GFAAALID P+WVMNVVPID PDTL+ IFDRGLIGMY
Sbjct: 444 YRDGLSMNWSSVRNIMDMNAGYAGFAAALIDLPVWVMNVVPIDMPDTLTTIFDRGLIGMY 503
Query: 216 HDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINK 275
HDWCES NTYPRTYDL+H+SFL + QRCDI VAVE+DRI+RP GY+LVQD++E+INK
Sbjct: 504 HDWCESLNTYPRTYDLVHASFLFKHLMQRCDIVVVAVEIDRIMRPDGYLLVQDSMEIINK 563
Query: 276 LKPVLHSLQWSTNIYHDQFLVGKKGFWRP 304
L PVL SL WS +Y +QFLVG+K FWRP
Sbjct: 564 LGPVLRSLHWSVTLYQNQFLVGRKSFWRP 592
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827657|ref|XP_002881711.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297327550|gb|EFH57970.1| dehydration-responsive family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/272 (63%), Positives = 212/272 (77%), Gaps = 6/272 (2%)
Query: 39 AMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
AMV+LT+S+CWK V ++VDS+ IG VIYQKP+S SCY R PPLCD K N+SW+V
Sbjct: 325 AMVSLTKSICWKVVTKTVDSSGIGLVIYQKPISESCYNKRSTQDPPLCD-KKEANASWYV 383
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVG 158
PL+ CIS+LP+ GN+ SWP WP+RL S P E KDT W A+VSDVY+
Sbjct: 384 PLAKCISKLPS---GNVQSWPELWPKRLVSVKPQSISVEAETLKKDTEKWSAIVSDVYLE 440
Query: 159 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDW 218
LA+NWS+VRNVMDMNA +GGFAAALI++PLWVMNVVP++ PDTLS+++DRGLIG+YHDW
Sbjct: 441 HLAVNWSTVRNVMDMNAGFGGFAAALINRPLWVMNVVPVNKPDTLSVVYDRGLIGIYHDW 500
Query: 219 CESFNTYPRTYDLLHSSFLL--SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276
CES NTYPRTYDLLHSSFLL +D+TQRC+I V E+DRI+RPGGY++VQDT+E I KL
Sbjct: 501 CESLNTYPRTYDLLHSSFLLGDTDLTQRCEIVQVVAEIDRIVRPGGYLVVQDTMETIKKL 560
Query: 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPTGGE 308
+ +L SL WST IY D+F VG+KGFWRP E
Sbjct: 561 EYILGSLHWSTKIYQDRFFVGRKGFWRPAKPE 592
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405331|ref|NP_565926.1| putative methyltransferase PMT23 [Arabidopsis thaliana] gi|75265917|sp|Q9SIZ3.2|PMTN_ARATH RecName: Full=Probable methyltransferase PMT23 gi|4588002|gb|AAD25943.1|AF085279_16 hypothetical ankyrin-like protein [Arabidopsis thaliana] gi|16649003|gb|AAL24353.1| Unknown protein [Arabidopsis thaliana] gi|20198017|gb|AAD25663.2| expressed protein [Arabidopsis thaliana] gi|20259948|gb|AAM13321.1| unknown protein [Arabidopsis thaliana] gi|330254712|gb|AEC09806.1| putative methyltransferase PMT23 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 172/269 (63%), Positives = 206/269 (76%), Gaps = 4/269 (1%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVP 99
MV+LT+S+CWK V ++VDS+ IG VIYQKP S SCY R PPLCD K N SW+VP
Sbjct: 323 MVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCD-KKEANGSWYVP 381
Query: 100 LSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPPDSEEAFNKDTTHWYALVSDVYVGG 159
L+ C+S+LP+ GN+ SWP WP+RL S P E KDT W A VSDVY+
Sbjct: 382 LAKCLSKLPS---GNVQSWPELWPKRLVSVKPQSISVKAETLKKDTEKWSASVSDVYLKH 438
Query: 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWC 219
LA+NWS+VRNVMDMNA +GGFAAALI+ PLWVMNVVP+D PDTLS+++DRGLIG+YHDWC
Sbjct: 439 LAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWC 498
Query: 220 ESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 279
ES NTYPRTYDLLHSSFLL D+TQRC+I V E+DRI+RPGGY++VQD +E I KL+ +
Sbjct: 499 ESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESI 558
Query: 280 LHSLQWSTNIYHDQFLVGKKGFWRPTGGE 308
L SL WST IY D+FLVG+KGFWRP E
Sbjct: 559 LGSLHWSTKIYEDRFLVGRKGFWRPAKPE 587
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| TAIR|locus:2063078 | 589 | AT2G40280 [Arabidopsis thalian | 0.857 | 0.449 | 0.628 | 3e-94 | |
| TAIR|locus:2013628 | 770 | AT1G29470 [Arabidopsis thalian | 0.877 | 0.351 | 0.466 | 3e-69 | |
| TAIR|locus:2040864 | 770 | AT2G34300 [Arabidopsis thalian | 0.877 | 0.351 | 0.455 | 3.1e-67 | |
| TAIR|locus:2160806 | 829 | AT5G64030 [Arabidopsis thalian | 0.877 | 0.326 | 0.450 | 1.1e-66 | |
| TAIR|locus:2080823 | 895 | AT3G51070 [Arabidopsis thalian | 0.857 | 0.296 | 0.456 | 5.8e-66 | |
| TAIR|locus:2016392 | 724 | AT1G19430 [Arabidopsis thalian | 0.893 | 0.381 | 0.442 | 1.1e-64 | |
| TAIR|locus:2063947 | 694 | AT2G39750 [Arabidopsis thalian | 0.786 | 0.350 | 0.414 | 3.8e-53 | |
| TAIR|locus:2153704 | 682 | AT5G06050 [Arabidopsis thalian | 0.779 | 0.353 | 0.403 | 3.5e-52 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.786 | 0.370 | 0.399 | 4e-51 | |
| TAIR|locus:2129660 | 608 | AT4G14360 [Arabidopsis thalian | 0.776 | 0.394 | 0.428 | 8.5e-49 |
| TAIR|locus:2063078 AT2G40280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 169/269 (62%), Positives = 203/269 (75%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHVP 99
MV+LT+S+CWK V ++VDS+ IG VIYQKP S SCY R PPLCD K N SW+VP
Sbjct: 323 MVSLTKSICWKVVTKTVDSSGIGLVIYQKPTSESCYNKRSTQDPPLCD-KKEANGSWYVP 381
Query: 100 LSNCISRLPTDSKGNLHSWPAPWPQRXXXXXXXXXXXXEEAFNKDTTHWYALVSDVYVGG 159
L+ C+S+LP+ GN+ SWP WP+R E KDT W A VSDVY+
Sbjct: 382 LAKCLSKLPS---GNVQSWPELWPKRLVSVKPQSISVKAETLKKDTEKWSASVSDVYLKH 438
Query: 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWC 219
LA+NWS+VRNVMDMNA +GGFAAALI+ PLWVMNVVP+D PDTLS+++DRGLIG+YHDWC
Sbjct: 439 LAVNWSTVRNVMDMNAGFGGFAAALINLPLWVMNVVPVDKPDTLSVVYDRGLIGVYHDWC 498
Query: 220 ESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 279
ES NTYPRTYDLLHSSFLL D+TQRC+I V E+DRI+RPGGY++VQD +E I KL+ +
Sbjct: 499 ESVNTYPRTYDLLHSSFLLGDLTQRCEIVQVVAEIDRIVRPGGYLVVQDNMETIMKLESI 558
Query: 280 LHSLQWSTNIYHDQFLVGKKGFWRPTGGE 308
L SL WST IY D+FLVG+KGFWRP E
Sbjct: 559 LGSLHWSTKIYEDRFLVGRKGFWRPAKPE 587
|
|
| TAIR|locus:2013628 AT1G29470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 132/283 (46%), Positives = 178/283 (62%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM LT++MCW+ + D N +G IYQKP+S CY R +N PPLC ++ N++W+
Sbjct: 482 AMSKLTKAMCWELMTIKKDELNEVGAAIYQKPMSNKCYNERSQNEPPLCKDSDDQNAAWN 541
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRXXXXXXXXXXX-------XEEAFNKDTTHWYA 150
VPL CI ++ DS WP WP+R +E F D W
Sbjct: 542 VPLEACIHKVTEDSSKRGAVWPESWPERVETVPQWLDSQEGVYGKPAQEDFTADHERWKT 601
Query: 151 LVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG 210
+VS Y+ G+ I+WS VRNVMDM A YGGFAAAL D LWVMNVVPID+PDTL II++RG
Sbjct: 602 IVSKSYLNGMGIDWSYVRNVMDMRAVYGGFAAALKDLKLWVMNVVPIDSPDTLPIIYERG 661
Query: 211 LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270
L G+YHDWCESF+TYPRTYDLLH+ L S + +RC++ V E+DRILRP G +V+D +
Sbjct: 662 LFGIYHDWCESFSTYPRTYDLLHADHLFSSLKKRCNLVGVMAEVDRILRPQGTFIVRDDM 721
Query: 271 EMINKLKPVLHSLQWSTNIYHDQ----FLVGKKGFWRPTGGET 309
E I +++ ++ S++W+ + H + L +K +WRPT ET
Sbjct: 722 ETIGEIEKMVKSMKWNVRMTHSKDGEGLLSVQKSWWRPTEAET 764
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| TAIR|locus:2040864 AT2G34300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 129/283 (45%), Positives = 173/283 (61%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM LT++MCWK V D N +G IYQKP S CY R +N PPLC ++ N++W+
Sbjct: 482 AMSELTKAMCWKLVTIKKDKLNEVGAAIYQKPTSNKCYNKRPQNEPPLCKDSDDQNAAWN 541
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQRXXXXXXXXXXX-------XEEAFNKDTTHWYA 150
VPL C+ ++ DS WP WP+R E F D W
Sbjct: 542 VPLEACMHKVTEDSSKRGAVWPNMWPERVETAPEWLDSQEGVYGKPAPEDFTADQEKWKT 601
Query: 151 LVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG 210
+VS Y+ + I+WS+VRNVMDM A YGGFAAAL D LWVMNVVP+DAPDTL II++RG
Sbjct: 602 IVSKAYLNDMGIDWSNVRNVMDMRAVYGGFAAALKDLKLWVMNVVPVDAPDTLPIIYERG 661
Query: 211 LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270
L G+YHDWCESFNTYPRTYDLLH+ L S + +RC++ V E+DRILRP G +++D +
Sbjct: 662 LFGIYHDWCESFNTYPRTYDLLHADHLFSTLRKRCNLVSVMAEIDRILRPQGTFIIRDDM 721
Query: 271 EMINKLKPVLHSLQWSTNIYHDQFLVG----KKGFWRPTGGET 309
E + +++ ++ S++W + + G +K +WRP ET
Sbjct: 722 ETLGEVEKMVKSMKWKVKMTQSKDNEGLLSIEKSWWRPEETET 764
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| TAIR|locus:2160806 AT5G64030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 128/284 (45%), Positives = 175/284 (61%)
Query: 39 AMVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWH 97
AM L + MCW+ V+ + D+ N +G Y+KP S CYKNR E PP+C ++ N+SW
Sbjct: 540 AMSELIKKMCWELVSINKDTINGVGVATYRKPTSNECYKNRSEPVPPICADSDDPNASWK 599
Query: 98 VPLSNCISRLPTDSKGNLHSWPAPWPQR--------XXXXXXXXXXXXEEAFNKDTTHWY 149
VPL C+ P D WP WP R E F+ D HW
Sbjct: 600 VPLQACMHTAPEDKTQRGSQWPEQWPARLEKAPFWLSSSQTGVYGKAAPEDFSADYEHWK 659
Query: 150 ALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR 209
+V+ Y+ GL INW+SVRNVMDM A YGGFAAAL D +WVMNVVPID+PDTL+II++R
Sbjct: 660 RVVTKSYLNGLGINWASVRNVMDMRAVYGGFAAALRDLKVWVMNVVPIDSPDTLAIIYER 719
Query: 210 GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269
GL G+YHDWCESF+TYPR+YDLLH+ L S + QRC++ V E+DR+LRP G ++V+D
Sbjct: 720 GLFGIYHDWCESFSTYPRSYDLLHADHLFSKLKQRCNLTAVIAEVDRVLRPEGKLIVRDD 779
Query: 270 LEMINKLKPVLHSLQWSTNIYHDQFLVG----KKGFWRPTGGET 309
E I +++ ++ +++W + + + G +K WRP+ ET
Sbjct: 780 AETIQQVEGMVKAMKWEVRMTYSKEKEGLLSVQKSIWRPSEVET 823
|
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| TAIR|locus:2080823 AT3G51070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 127/278 (45%), Positives = 177/278 (63%)
Query: 40 MVNLTESMCWKAVARSVDS-NRIGFVIYQKPVSYSCYKNREENTPPLCDGKNNLNSSWHV 98
M LT+S+CW+ V + D N IG IYQKP + CY+ R+ N PPLC ++ N++W+V
Sbjct: 614 MSALTKSLCWELVTINKDKLNGIGAAIYQKPATNECYEKRKHNKPPLCKNNDDANAAWYV 673
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRXXX-----XXXXXXXXXEEA---FNKDTTHWYA 150
PL C+ ++PT+ WP WP+R + A F D HW
Sbjct: 674 PLQACMHKVPTNVVERGSKWPVNWPRRLQTPPYWLNSSQMGIYGKPAPRDFTTDYEHWKH 733
Query: 151 LVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG 210
+VS VY+ + I+WS+VRNVMDM A YGGFAAAL D +WVMNVV I++PDTL II++RG
Sbjct: 734 VVSKVYMNEIGISWSNVRNVMDMRAVYGGFAAALKDLQVWVMNVVNINSPDTLPIIYERG 793
Query: 211 LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270
L G+YHDWCESF+TYPR+YDLLH+ L S + RC++ V E+DRI+RPGG ++V+D
Sbjct: 794 LFGIYHDWCESFSTYPRSYDLLHADHLFSKLRTRCNLVPVMAEVDRIVRPGGKLIVRDES 853
Query: 271 EMINKLKPVLHSLQWSTNI----YHDQFLVGKKGFWRP 304
+I +++ +L SL W ++ + + L +KGFWRP
Sbjct: 854 NVIREVENMLKSLHWDVHLTFSKHQEGILSAQKGFWRP 891
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| TAIR|locus:2016392 AT1G19430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 126/285 (44%), Positives = 179/285 (62%)
Query: 26 LSSFNVHIRFSLAAMVNLTESMCWKAVA-RSVDSNRIGFVIYQKPVSYSCYKNREENTPP 84
LSS N I AM LT S+CW +A ++ +++ +G IYQKP S Y+ R + PP
Sbjct: 443 LSSNNDKIEDD-EAMTALTASICWNILAHKTEEASEMGVRIYQKPESNDIYELRRKKNPP 501
Query: 85 LCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRXXXXXXXXXXXXEEAFNKD 144
LC+ N +++W+VP+ CI +P+ + + WP WP+R E+A +D
Sbjct: 502 LCEDNENPDAAWYVPMKTCIYEIPSAIEQHGAEWPEEWPKRLETYPEWLTSK-EKAM-ED 559
Query: 145 TTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLS 204
T HW A+V+ Y+ GL I+W +RNVMDM A YGGF A+L+ Q +WVMNVVP+ +PDTL
Sbjct: 560 TNHWNAMVNKSYLTGLGIDWLHIRNVMDMTAIYGGFGASLVKQNVWVMNVVPVHSPDTLP 619
Query: 205 IIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC-DIADVAVEMDRILRPGGY 263
I++RGL+G+YHDWCE F TYPR+YDLLH+ L S + RC A + VEMDR+ RPGG+
Sbjct: 620 FIYERGLLGIYHDWCEPFGTYPRSYDLLHADHLFSRLKNRCKQPASIVVEMDRLTRPGGW 679
Query: 264 VLVQDTLEMINKLKPVLHSLQWSTNIYHDQ----FLVGKKGFWRP 304
V+V+D +E++ L+ +L SL W + + Q L +K WRP
Sbjct: 680 VVVRDKVEILEPLEEILRSLHWEIRMTYAQDKEGMLCAQKTLWRP 724
|
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| TAIR|locus:2063947 AT2G39750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 107/258 (41%), Positives = 162/258 (62%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFV-IYQKPVSYSCYKNREENT-PPLCDGKNNLNSSWH 97
M+NLT S+CWK V + G+V I+QKP + CY +RE T PPLCD ++ ++ W+
Sbjct: 421 MLNLTISLCWKLVKKE------GYVAIWQKPFNNDCYLSREAGTKPPLCDESDDPDNVWY 474
Query: 98 VPLSNCISRLPTDSKG-NLHSWPAPW---PQRXXXXXXXXXXXXEEAFNKDTTHWYALVS 153
L CISR+P G N+ WPA P R +E F ++ +W ++
Sbjct: 475 TNLKPCISRIPEKGYGGNVPLWPARLHTPPDRLQTIKFDSYIARKELFKAESKYWNEIIG 534
Query: 154 DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAPDTLSIIFDRGL 211
YV L +RNV+DM A +GGFAAAL D L WV++VVP+ P+TL +I+DRGL
Sbjct: 535 G-YVRALKWKKMKLRNVLDMRAGFGGFAAALNDHKLDCWVLSVVPVSGPNTLPVIYDRGL 593
Query: 212 IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271
+G+ HDWCE F+TYPRTYD LH+S L S +RC+++ + +EMDRILRPGG ++D+++
Sbjct: 594 LGVMHDWCEPFDTYPRTYDFLHASGLFSIERKRCEMSTILLEMDRILRPGGRAYIRDSID 653
Query: 272 MINKLKPVLHSLQWSTNI 289
++++++ + ++ W T++
Sbjct: 654 VMDEIQEITKAMGWHTSL 671
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| TAIR|locus:2153704 AT5G06050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 105/260 (40%), Positives = 169/260 (65%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFV-IYQKPVSYSCYKNREEN-TPPLCDGKNNLNSSWH 97
M+NLT +CW V + G++ I+QKPV+ +CY +R +PPLC+ +++ ++ W+
Sbjct: 393 MLNLTTRLCWVLVKKE------GYIAIWQKPVNNTCYLSRGAGVSPPLCNSEDDPDNVWY 446
Query: 98 VPLSNCISRLPTDSKG-NLHSWPAPW---PQRXXXXXXXXXXXXEEAFNKDTTHWYALVS 153
V L CI+R+ + G NL WPA P R +E F ++ +W ++S
Sbjct: 447 VDLKACITRIEENGYGANLAPWPARLLTPPDRLQTIQIDSYIARKELFVAESKYWKEIIS 506
Query: 154 DVYVGGLAINWSSV--RNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAPDTLSIIFDR 209
+ YV A++W + RNV+DM A +GGFAAAL + + WV+NV+P+ P+TL +I+DR
Sbjct: 507 N-YVN--ALHWKQIGLRNVLDMRAGFGGFAAALAELKVDCWVLNVIPVSGPNTLPVIYDR 563
Query: 210 GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269
GL+G+ HDWCE F+TYPRTYDLLH++ L S +RC++ + +EMDRILRPGG V ++DT
Sbjct: 564 GLLGVMHDWCEPFDTYPRTYDLLHAAGLFSIERKRCNMTTMMLEMDRILRPGGRVYIRDT 623
Query: 270 LEMINKLKPVLHSLQWSTNI 289
+ + ++L+ + ++++W T++
Sbjct: 624 INVTSELQEIGNAMRWHTSL 643
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| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 105/263 (39%), Positives = 164/263 (62%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFV-IYQKPVSYSCYKNREENT-PPLCDGKNNLNSSWH 97
M++LT +CW+ + + G++ +++KP++ SCY +RE T PPLC ++ + W+
Sbjct: 385 MLDLTNRICWELIKKE------GYIAVWRKPLNNSCYVSREAGTKPPLCRPDDDPDDVWY 438
Query: 98 VPLSNCISRLPTDSKG-NLHSWPAPW---PQRXXXXXXXXXXXXEEAFNKDTTHWYALVS 153
V + CI+RLP + G N+ +WPA P+R +E ++ W +V
Sbjct: 439 VDMKPCITRLPDNGYGANVSTWPARLHDPPERLQSIQMDAYISRKEIMKAESRFWLEVVE 498
Query: 154 DVYVGGLAINWSS--VRNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAPDTLSIIFDR 209
YV W +RNV+DM A +GGFAAAL D L WVMN+VP+ +TL +I+DR
Sbjct: 499 S-YVR--VFRWKEFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPVSGFNTLPVIYDR 555
Query: 210 GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269
GL G HDWCE F+TYPRTYDL+H++FL S +RC+I ++ +EMDR+LRPGG+V ++D+
Sbjct: 556 GLQGAMHDWCEPFDTYPRTYDLIHAAFLFSVEKKRCNITNIMLEMDRMLRPGGHVYIRDS 615
Query: 270 LEMINKLKPVLHSLQWSTNIYHD 292
L ++++L+ V ++ W+ + HD
Sbjct: 616 LSLMDQLQQVAKAIGWTAGV-HD 637
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| TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 108/252 (42%), Positives = 148/252 (58%)
Query: 40 MVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREENT-PPLCDGKNNLNSSWHV 98
M L E MCWK A+ N+ VI+QKP++ CY RE T PPLC N+ ++ W V
Sbjct: 326 MSALVERMCWKIAAKR---NQT--VIWQKPLTNDCYLEREPGTQPPLCRSDNDPDAVWGV 380
Query: 99 PLSNCISRLPTDSKGNLHSWPAPWPQRXXXX--XXXXXXXXEEAFNKDTTHWYALVSDVY 156
+ CI+ S APWP R F KDT W V D Y
Sbjct: 381 NMEACITSYSDHDHKTKGSGLAPWPARLTSPPPRLADFGYSTGMFEKDTELWRQRV-DTY 439
Query: 157 VGGLA--INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGM 214
L+ I +VRN+MDM AS G FAAAL ++ +WVMNVVP D P+TL +I+DRGL+G
Sbjct: 440 WDLLSPRIESDTVRNIMDMKASMGSFAAALKEKDVWVMNVVPEDGPNTLKLIYDRGLMGA 499
Query: 215 YHDWCESFNTYPRTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTLEMI 273
H WCE+F+TYPRTYDLLH+ ++SD+ ++ C D+ +EMDRILRP G+++++D ++
Sbjct: 500 VHSWCEAFSTYPRTYDLLHAWDIISDIKKKGCSEVDLLLEMDRILRPSGFIIIRDKQRVV 559
Query: 274 NKLKPVLHSLQW 285
+ +K L +L W
Sbjct: 560 DFVKKYLKALHW 571
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029349001 | SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (606 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 309 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-122 | |
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 3e-04 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-122
Identities = 127/260 (48%), Positives = 172/260 (66%), Gaps = 12/260 (4%)
Query: 38 AAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNRE-ENTPPLCDGKNNLNSSW 96
AM L +S+CWK VA+ D I+QKPV+ SCY RE PPLC ++ +++W
Sbjct: 235 KAMEALAKSLCWKLVAKKGD-----IAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAW 289
Query: 97 HVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSL-----PPDSEEAFNKDTTHWYAL 151
+VP+ CI+ LP S W WP+RL++ PP L S EAF DT W
Sbjct: 290 YVPMEACITPLPEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRR 349
Query: 152 VSDVY-VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG 210
VS + L I+ VRNVMDMNA +GGFAAALID P+WVMNVVP+D+PDTL +I+DRG
Sbjct: 350 VSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRG 409
Query: 211 LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270
LIG+YHDWCE F+TYPRTYDLLH+ L S +RC++ D+ +EMDRILRPGG V+++D +
Sbjct: 410 LIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDDV 469
Query: 271 EMINKLKPVLHSLQWSTNIY 290
++++K+K + +++W I
Sbjct: 470 DVLDKVKKIAKAMRWEVRIT 489
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This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 29/119 (24%)
Query: 162 INWS-SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDA-------------PDTLSIIF 207
I W VR +D+ F A L+ + + M+ P D P L ++
Sbjct: 112 IAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLG 171
Query: 208 DRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265
R L YP R++D+ H S L I + +E+DR+LRPGGY +
Sbjct: 172 TRRL------------PYPSRSFDMAHCSRCLIPWHANDGI--LLLEVDRVLRPGGYFV 216
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This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.69 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.64 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.55 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.44 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.42 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.4 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.38 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.38 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.37 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.35 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.34 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.33 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.31 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.3 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.27 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.26 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.25 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.25 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.23 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.23 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.23 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.23 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.22 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.22 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.22 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.22 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.21 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.21 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.19 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.17 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.16 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.14 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.13 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.13 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.12 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.11 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.09 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.07 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.07 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.07 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.05 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.05 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.03 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.02 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.02 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.01 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.0 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.0 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.99 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.99 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.98 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.97 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.95 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.95 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.94 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.93 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.92 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.91 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.9 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.88 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.87 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.87 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.86 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.84 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.83 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.82 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.82 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.8 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.76 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.76 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.74 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.73 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.73 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.72 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.71 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.71 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.7 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.69 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.69 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.68 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.68 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.67 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.66 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.64 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.62 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.61 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.6 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.58 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.58 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.58 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.56 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.53 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.53 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.52 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.5 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.48 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.47 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.45 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.43 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.4 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.39 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.37 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.32 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.3 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.27 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.27 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.27 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.25 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.22 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.21 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.21 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.2 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.19 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.19 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.19 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.15 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.13 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.1 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.09 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.08 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.07 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.06 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.05 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.04 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.04 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.01 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.01 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.0 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.97 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.96 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.96 | |
| PLN02366 | 308 | spermidine synthase | 97.95 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.94 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.88 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.88 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.87 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 97.83 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.81 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.8 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.77 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.71 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.68 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.68 | |
| PLN02476 | 278 | O-methyltransferase | 97.66 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.6 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.6 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.57 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.57 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.48 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.48 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.46 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.41 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.41 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.4 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.39 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.38 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.34 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.27 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.25 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.2 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.15 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.15 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.11 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.07 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.06 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.0 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.92 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 96.84 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.81 | |
| PLN02823 | 336 | spermine synthase | 96.77 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.77 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.7 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.68 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 96.5 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.43 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.36 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 96.28 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.03 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.01 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.96 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.94 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 95.93 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.93 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.92 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 95.9 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.88 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 95.73 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.54 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.52 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 95.41 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.23 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.2 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.19 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 95.03 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 94.98 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 94.89 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 94.86 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.64 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 94.64 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.59 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 94.52 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 94.43 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 94.4 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 94.23 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.19 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 94.16 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 94.08 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 94.05 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 93.73 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 93.65 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 93.58 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 93.21 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.14 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 93.01 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 92.6 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 92.54 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 92.04 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 91.79 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 91.75 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 91.57 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 91.24 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 91.11 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 90.9 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 90.75 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 89.86 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 89.44 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 89.02 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.02 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 88.53 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 88.36 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 88.26 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 88.1 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 86.21 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 86.07 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 85.94 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 85.77 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 85.54 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 85.49 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 82.8 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 81.57 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-85 Score=646.00 Aligned_cols=278 Identities=48% Similarity=0.933 Sum_probs=261.7
Q ss_pred cceeeeeecccCCCc---------------hhhHHHHHHHHHHHHhcchhhhhhhcCCCceeEEEEEcCCCCchhccccC
Q 021643 16 NLSYGLECCNLSSFN---------------VHIRFSLAAMVNLTESMCWKAVARSVDSNRIGFVIYQKPVSYSCYKNREE 80 (309)
Q Consensus 16 ~~~~~~~~~~~~~~~---------------~~~~~~w~~~~~l~~~~Cw~~~~~~~~~~~~~~~iw~Kp~~~~C~~~r~~ 80 (309)
.++||+|+||+|||+ .+..++|++|++||++|||++|++++| +||||||.+|+||.+|+.
T Consensus 198 ~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~~~~-----~aIwqKp~~~~Cy~~r~~ 272 (506)
T PF03141_consen 198 DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAEKGD-----TAIWQKPTNNSCYQKRKP 272 (506)
T ss_pred ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHheeeCC-----EEEEeccCCchhhhhccC
Confidence 589999999999993 246789999999999999999999998 999999999999999986
Q ss_pred -CCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CchhhhcccchhHHHHHHH
Q 021643 81 -NTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRLSSKPPSLPP-----DSEEAFNKDTTHWYALVSD 154 (309)
Q Consensus 81 -~~p~~C~~~~~~~~~wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl~~~p~~l~~-----~~~e~F~~d~~~W~~~v~~ 154 (309)
..||+|++++|||++||+||++||+|+|+......++++.+||+||+++|+||+. .+.|.|.+|+++|+++|.+
T Consensus 273 ~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~ 352 (506)
T PF03141_consen 273 GKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSH 352 (506)
T ss_pred CCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999888999999999999999999975555567899999999999999987 5889999999999999997
Q ss_pred HHHhc--cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCccee
Q 021643 155 VYVGG--LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLL 232 (309)
Q Consensus 155 ~y~~~--l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlV 232 (309)
|... +.+.++++||||||++|+|||||+|.+++||||||+|+..+++|+++++|||+|+||||||++++||||||||
T Consensus 353 -Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLl 431 (506)
T PF03141_consen 353 -YKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLL 431 (506)
T ss_pred -HHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhhe
Confidence 5543 4588899999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee--------cceEEEEEe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY--------HDQFLVGKK 299 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~--------~e~~li~~K 299 (309)
|++++|+++.++|+++++|.||||||||||++||+|..+++++|++|+++|||++.+. +|++|||||
T Consensus 432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999887 699999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=338.09 Aligned_cols=212 Identities=22% Similarity=0.361 Sum_probs=182.1
Q ss_pred CCchhccccCCCCCCCCCCCCCCCcccccCCCccccCCCCCCCCCCCCCCCCCCCC------CCCCCCCCC-------C-
Q 021643 71 SYSCYKNREENTPPLCDGKNNLNSSWHVPLSNCISRLPTDSKGNLHSWPAPWPQRL------SSKPPSLPP-------D- 136 (309)
Q Consensus 71 ~~~C~~~r~~~~p~~C~~~~~~~~~wy~~~~~Cl~p~P~~~~~~~~~~p~~WP~rl------~~~p~~l~~-------~- 136 (309)
+.+-+++||++ |+..++ ...|++|+|.+| + .|++||+|+ |+|++.|+. +
T Consensus 17 ~~~~~~~rERh----CP~~~~--------~~~CLVp~P~gY---k--~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~ 79 (506)
T PF03141_consen 17 SRERMEHRERH----CPPPEE--------RLRCLVPPPKGY---K--TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVR 79 (506)
T ss_pred CcccccEeecc----CcCCCC--------CCccccCCCccC---C--CCCCCCcccceeeecccCchHHhhhccccccee
Confidence 45567788888 988654 899999999954 6 799999999 889998876 1
Q ss_pred ---chhhhcccchhHHHHHHHHHHhccC----C--CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH
Q 021643 137 ---SEEAFNKDTTHWYALVSDVYVGGLA----I--NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII 206 (309)
Q Consensus 137 ---~~e~F~~d~~~W~~~v~~~y~~~l~----i--~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a 206 (309)
..-.|++.+..|.+.+.+ |+++++ + ..+.+|++||+|||+|+||++|.+++|.+|+++|.|.+ .++++|
T Consensus 80 ~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 80 VEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred ecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhh
Confidence 122799999999999986 887553 3 45789999999999999999999999999999999998 689999
Q ss_pred HhcCcchhhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC----------HHHHHH
Q 021643 207 FDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINK 275 (309)
Q Consensus 207 ~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~ 275 (309)
.|||+...+.-....+|||| ++||+|||+.|+..|....++ +|.|+||||||||||+++.. .+.+++
T Consensus 159 leRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~ 236 (506)
T PF03141_consen 159 LERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNA 236 (506)
T ss_pred hhcCcchhhhhhccccccCCccchhhhhcccccccchhcccc--eeehhhhhhccCceEEecCCcccccchHHHHHHHHH
Confidence 99998544433334689999 999999999999999876666 99999999999999999743 468999
Q ss_pred HHHHHHcCCCeeeeecceEEEEEeCcC
Q 021643 276 LKPVLHSLQWSTNIYHDQFLVGKKGFW 302 (309)
Q Consensus 276 i~~l~~~l~W~~~~~~e~~li~~K~~w 302 (309)
|++++++|||+...++++++||||+.-
T Consensus 237 ~~~l~~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 237 MEDLAKSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred HHHHHHHHHHHHheeeCCEEEEeccCC
Confidence 999999999999999999999999864
|
; GO: 0008168 methyltransferase activity |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-17 Score=150.63 Aligned_cols=115 Identities=29% Similarity=0.389 Sum_probs=91.4
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h------h
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G------M 214 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g------~ 214 (309)
+.++.|++.... .+++. +..+|||+|||||-+|..+++... ...|+.+|.+ +||..+.+|-.- + +
T Consensus 34 g~~~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv 106 (238)
T COG2226 34 GLHRLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFV 106 (238)
T ss_pred cchHHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEE
Confidence 566888886654 33333 346899999999999999998532 3468889998 799999998542 1 2
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..| +| .|||| +|||+|.+++.|+++. +++.+|.||+|||||||.+++.|.
T Consensus 107 ~~d-Ae-~LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 107 VGD-AE-NLPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred Eec-hh-hCCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 333 33 69999 9999999999999887 488999999999999999999874
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-16 Score=146.11 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=73.2
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc------ch-h
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IG-M 214 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl------ig-~ 214 (309)
+-++.|++.+.+ .. ... +..+|||+|||||.++..|+++-.....|+++|.+ +||..+.+|.. +. +
T Consensus 30 g~~~~wr~~~~~-~~---~~~--~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v 103 (233)
T PF01209_consen 30 GQDRRWRRKLIK-LL---GLR--PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFV 103 (233)
T ss_dssp -------SHHHH-HH---T----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEE
T ss_pred cHHHHHHHHHHh-cc---CCC--CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEE
Confidence 567889987765 32 222 23589999999999999998752222367888998 79999987632 11 1
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..| ++ .+||| ++||.|.|++.++++++ ..++|.||+|||||||.++|.|.
T Consensus 104 ~~d-a~-~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 104 QGD-AE-DLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp E-B-TT-B--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EcC-HH-HhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeec
Confidence 222 22 69999 99999999999997764 78899999999999999999874
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-16 Score=120.09 Aligned_cols=89 Identities=27% Similarity=0.381 Sum_probs=68.1
Q ss_pred EEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch----hhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 171 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG----MYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig----~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
||+|||+|.++..|++++. .++.++|.+ .+++.+.++.... ...+. ..+||| ++||+|++..+++|+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~--~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDA--EDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBT--TSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehH--HhCccccccccccccccceeecc--
Confidence 8999999999999999822 356777777 5788888775421 22232 357999 9999999999999983
Q ss_pred CCHHHHHHHHhhcccCCeEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii 266 (309)
+..+++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 478999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=135.64 Aligned_cols=97 Identities=24% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc---------ch-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---------IG-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl---------ig-~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|+++ +.. ..|+++|.+ +|++.|.+|.. +. ...| + ..+||+ ++||+|+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d-~-~~lp~~~~sfD~V~ 150 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD-A-TDLPFDDCYFDAIT 150 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcc-c-ccCCCCCCCEeEEE
Confidence 458999999999999888864 211 257788888 69998876531 11 1122 2 258999 9999999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++.+++|++ ++..+|.|+.|+|||||++++.|-
T Consensus 151 ~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 151 MGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999886 478899999999999999999874
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.5e-14 Score=116.54 Aligned_cols=94 Identities=23% Similarity=0.474 Sum_probs=72.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...+|||+|||+|.++..|++.+. .++++|.+ .+++. +.......+ ....+++ ++||+|+|+.+|+|+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence 356899999999999999988876 56677776 45554 222111111 1234556 99999999999999984
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+..+|.++.|+|||||++++.+..
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcC
Confidence 788999999999999999999865
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.6e-13 Score=121.92 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=78.6
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccC
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESF 222 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~ 222 (309)
.+..|++.+.. .+.... . ...+|||+|||||.++..|++.. ...|+++|.+ +|++.+.++.-. ...+ ++ .
T Consensus 33 ~~~~wr~~~~~-~l~~~~-~--~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~~~-~~~d-~~-~ 103 (226)
T PRK05785 33 QDVRWRAELVK-TILKYC-G--RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVADDK-VVGS-FE-A 103 (226)
T ss_pred CcHHHHHHHHH-HHHHhc-C--CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhccce-EEec-hh-h
Confidence 34678776654 322211 1 13589999999999999998863 1367888988 799999887421 1222 22 5
Q ss_pred CCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCe
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGG 262 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG 262 (309)
+||+ ++||+|+++++++|+. +++.+|.||+|||||.+
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 8999 9999999999998765 47889999999999954
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-13 Score=128.91 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcch----hhhhccccCCCCC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLIG----MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rglig----~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
...+|||+|||+|.++..|+++ +. .|+++|.+ .+++.+.+ +|+.. ...|. ..+||+ ++||+|++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~--~~~~~~~~~FD~V~s 192 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA--LNQPFEDGQFDLVWS 192 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc--ccCCCCCCCccEEEE
Confidence 3468999999999999999885 33 45666666 46655544 34411 12232 247899 99999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..+++|+.+ ...+|.|+.|+|||||.++|.+
T Consensus 193 ~~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 999999874 6789999999999999999975
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=120.08 Aligned_cols=95 Identities=20% Similarity=0.266 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h-hhhhccccCCCCC-CCcceeEeccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
...+|||+|||+|.++..|.+.+. .+..+|.+ .+++.+.++... . ...|. + .+||+ ++||+|+++.++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~-~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-E-SLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-c-cCcCCCCcEEEEEECchhhhc
Confidence 356899999999999999987653 46677877 688888887531 1 12232 2 47888 899999999888765
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ++..+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 4 47889999999999999999985
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-13 Score=122.85 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...+|||+|||+|.++..|+++.. ...|+++|.+ .|++.+.++++.-...|. + .++ + ++||+|+|+.+|+|+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~-~~~-~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGDV-R-DWK-PKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcCh-h-hCC-CCCCceEEEEehhhhhCCC
Confidence 346899999999999999987621 1256777887 699999888753223332 2 233 5 89999999999998864
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...++.++.|+|||||++++..
T Consensus 105 ---~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 105 ---HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ---HHHHHHHHHHhCCCCcEEEEEc
Confidence 6789999999999999999863
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=122.01 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=81.6
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcCCC-----EEEEecccCCc-ccHHHHHhcC----cc------hhhhhccccCCCCC-
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQPL-----WVMNVVPIDAP-DTLSIIFDRG----LI------GMYHDWCESFNTYP- 226 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~~v-----~v~~V~p~d~s-~~l~~a~eRg----li------g~~~d~ce~~lpfP- 226 (309)
++..-++|||+||||-.|-.+.+.-- ...+|+-.|.+ +||..+.+|. +- -+.+| + +.||||
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d-A-E~LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD-A-EDLPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC-c-ccCCCCC
Confidence 33447899999999998877765311 11345556665 6888777665 31 11122 2 379999
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHH-HHHHHHHHc
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMI-NKLKPVLHS 282 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~-~~i~~l~~~ 282 (309)
++||+...++.+..+.| ++++|.|++|||||||+|.+-+...+- +-++.+.+.
T Consensus 176 ~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ 229 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ 229 (296)
T ss_pred CcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh
Confidence 99999999999987765 789999999999999999998876543 455555443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=116.87 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=89.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++++. +|.++|.+ .+++.+.+ +++. ....|.. ..+++++||+|+|+.++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLN--NLTFDGEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChh--hCCcCCCcCEEEEecch
Confidence 35899999999999999999864 56667777 56665543 3331 1223321 24556789999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------H---HHHHHHHHHHcCCCeeeeecceEEEEEeCcCCC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------E---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWRP 304 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~---~~~~i~~l~~~l~W~~~~~~e~~li~~K~~w~~ 304 (309)
+|+. ..+...++.++.|+|||||++++.+.. . ..+++.+... .|+.....+.+....|+.|..
T Consensus 106 ~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~~~~~~~~g 182 (197)
T PRK11207 106 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGELHRTDANG 182 (197)
T ss_pred hhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHhhcccccCC
Confidence 8765 345788999999999999996553211 0 1234445444 587766666677777766654
Q ss_pred CC
Q 021643 305 TG 306 (309)
Q Consensus 305 ~~ 306 (309)
+.
T Consensus 183 ~~ 184 (197)
T PRK11207 183 NR 184 (197)
T ss_pred CE
Confidence 43
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-13 Score=128.25 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=74.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c---chhhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..|+..+. .|.++|.+ ++++.|.++. + +...+.-++ .++++ ++||+|+|..++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae-~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAE-KLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHH-HhhhccCCCCEEEEhhHH
Confidence 5899999999999999988764 56777887 6888887652 1 111111112 46777 899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.+ ...+|.|+.|+|||||.+++.+.
T Consensus 209 eHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 99875 67899999999999999999864
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-12 Score=121.93 Aligned_cols=98 Identities=20% Similarity=0.274 Sum_probs=74.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----ch-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IG-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|+... ...++.+|.+ +++..+.++.. +. ...|. . ..||| ++||+|++..++.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~-~-~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI-L-KKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc-c-cCCCCCCCeEEEEEhhhHH
Confidence 4689999999999999887642 1256777777 68888877632 11 12222 1 46898 9999999998888
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.. .+...+|.++.|+|||||++++.|.
T Consensus 129 h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8752 3478899999999999999999874
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=114.57 Aligned_cols=98 Identities=22% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.-.-...++.+|.+ ++++.+.++ ++ +... .| .+ .++++ ++||+|+++.+
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~~-~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN-AM-ELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec-hh-cCCCCCCCccEEEEecc
Confidence 3589999999999999998641011245666776 577666654 22 1111 22 12 46788 99999999998
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|..+ ...+|.|+.|+|||||++++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 124 LRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 887753 67899999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-12 Score=103.10 Aligned_cols=98 Identities=26% Similarity=0.344 Sum_probs=69.4
Q ss_pred CeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccHHHHHhcC----c---ch-hhhhccccCCCCCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRG----L---IG-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+|||+|||+|.++.+|++ .+. .++++|.+ .+++.+.++- . +. ...|+ .....++..||+|++..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 5899999999999999998 554 35666776 5777776654 2 11 11222 11244457799999998
Q ss_pred -ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 -LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 -v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++++.+..+..++|.++.+.|||||+++|+++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 455443334567899999999999999999863
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=117.71 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch---hh-hhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG---MY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig---~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.+. .|+.+|.+ ++++.|.++ |+.. .. .+. +...+++ ++||+|+|+.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~-~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA-QDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-HHHhhhcCCCCCEEEehh
Confidence 46899999999999999999864 56677887 688777654 3311 11 121 1123566 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|+.+ ...+|.++.|+|||||++++..
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9998864 5789999999999999998763
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=110.76 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=86.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--hhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++.+|++++. .|.++|.+ .+++.+.+ .|+. ....|. ...+++++||+|+++.+|+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~--~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDI--NAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc--hhccccCCCCEEEEecccc
Confidence 35899999999999999998763 56677776 56665543 3431 111221 1245567899999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HH---HHHHHHHHHHcCCCeeeeecceEEEEEeCcCC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LE---MINKLKPVLHSLQWSTNIYHDQFLVGKKGFWR 303 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~---~~~~i~~l~~~l~W~~~~~~e~~li~~K~~w~ 303 (309)
|++. .+...++.++.|+|||||++++.+. .. ..+++.++... |+.....|.+.-+.|+-|.
T Consensus 106 ~~~~-~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~~--~~~~~~~e~~~~~~~~~~~ 180 (195)
T TIGR00477 106 FLQA-GRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYAD--WELLKYNEAVGELHATDAN 180 (195)
T ss_pred cCCH-HHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhCC--CeEEEeecccccccccccC
Confidence 8753 3577899999999999999655421 11 13445555543 8777766666555665543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.2e-12 Score=125.16 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--c---ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--L---IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--l---ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..|++.. ...++++|.+ .++..|.++. . +. ...|.. ..++| ++||+|+|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCT--KKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcc--cCCCCCCCEEEEEECCc
Confidence 34689999999999999888752 1256777887 6888876652 2 11 123322 36788 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.|+.+ .+.+|.|+.|+|||||.+++.|
T Consensus 342 l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 342 ILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 999874 6789999999999999999986
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-11 Score=106.54 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--chhhhhc
Q 021643 146 THWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDW 218 (309)
Q Consensus 146 ~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig~~~d~ 218 (309)
..|.+.+.+.-.-.-.++. ..+|||+|||+|.++..++...- ...|+.+|.+ .+++.+.+ .|+ +......
T Consensus 27 ~~~~~~~~d~l~l~~~l~~--g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d 103 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG--GERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR 103 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC--CCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 4777766431110011222 46899999999999888875211 1256677776 56655543 343 1112211
Q ss_pred cccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 219 CESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 219 ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
.+. ++..++||+|+|+.. .+++.++.++.|+|||||++++.+......++..++..+.|+...
T Consensus 104 ~~~-~~~~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 104 AEE-FGQEEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEE 166 (187)
T ss_pred Hhh-CCCCCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEee
Confidence 221 222579999998742 246789999999999999999999888899999999999998644
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=116.85 Aligned_cols=106 Identities=20% Similarity=0.348 Sum_probs=68.6
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHH----HHhcCcchhhhhccccCCCCCCCc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSI----IFDRGLIGMYHDWCESFNTYPRTY 229 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~----a~eRglig~~~d~ce~~lpfP~sF 229 (309)
+++.+++.+| .+|||+|||.|+++.+++++ ++.| +++..| ++.+. +.++|+.....-.+.....++.+|
T Consensus 54 ~~~~~~l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v---~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 54 LCEKLGLKPG--DRVLDIGCGWGGLAIYAAERYGCHV---TGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EE---EEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHhCCCCC--CEEEEeCCCccHHHHHHHHHcCcEE---EEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 5667777765 59999999999999999987 7654 444445 44444 455676321111111123445699
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|.|++..+|+|+.. .+...++..++|+|||||.+++.
T Consensus 129 D~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 129 DRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred CEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999999963 45788999999999999999875
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=116.99 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=66.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH---Hhc-C---cchhh-hhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII---FDR-G---LIGMY-HDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a---~eR-g---lig~~-~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.++|||+|||+|.++..++..+.. .|+++|.+ .++..+ ... + .+... .+ . ..+|++.+||+|+|..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~-i-e~lp~~~~FD~V~s~gv 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLG-I-EQLHELYAFDTVFSMGV 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECC-H-HHCCCCCCcCEEEEcch
Confidence 368999999999999888876542 35566666 354321 111 1 11101 11 1 13565578999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|.. ++.++|.|++|+|||||.+++.+
T Consensus 198 L~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 99876 46889999999999999999863
|
Known examples to date are restricted to the proteobacteria. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.3e-12 Score=115.54 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=77.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
-.+|||+|||-|.++..|+..|. +|+++|.+ .+++.|..+.+ ...|....-..+-.. ++||+|.|..+++|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35799999999999999999984 67888998 68888875543 211211111235555 89999999999999
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+++ ++.++++..+.+||||.+++++-.
T Consensus 137 v~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 137 VPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred cCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 986 677999999999999999999754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-11 Score=111.90 Aligned_cols=97 Identities=21% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCCCCcceeEecccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
+..+|||+|||+|.++..|++... ...+.++|.+ .+++.+.++.- +. ...|. + .++.+++||+|+++.+|+|+.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~-~-~~~~~~~fD~v~~~~~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADI-A-SWQPPQALDLIFANASLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECch-h-ccCCCCCccEEEEccChhhCC
Confidence 346899999999999999987521 1256777777 68888877632 11 11221 1 122238999999999998876
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+ ...+|.++.|+|||||.+++..
T Consensus 108 d---~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 108 D---HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred C---HHHHHHHHHHhcCCCcEEEEEC
Confidence 4 6789999999999999999963
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-12 Score=102.82 Aligned_cols=90 Identities=24% Similarity=0.367 Sum_probs=51.7
Q ss_pred EEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c--hhhh-hccccCCCCC-CCcceeEeccccccc
Q 021643 171 MDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I--GMYH-DWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i--g~~~-d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
||+|||+|.++..|.++. ....++.+|.+ .+++.+++|-- . .... +-.+...+.+ ++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998763 23456777777 56654444421 0 0000 0001122333 699999999999999
Q ss_pred cccCCHHHHHHHHhhcccCCeEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYV 264 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~l 264 (309)
. ++..+|..+.++|||||.|
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 5889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=107.55 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---chhhhhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|++.... ..+..+|.+ .++..+.++.. .....|. + ..+++ ++||+|+++.+++|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~-~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICGDA-E-KLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEecch-h-hCCCCCCceeEEEEhhhhhhc
Confidence 368999999999999999886421 235666766 57777766532 1122232 2 46778 999999999999887
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. +...+|.++.|+|||||++++.+
T Consensus 112 ~---~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D---DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 5 36789999999999999999975
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=116.98 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHH--HHhcCc-----ch-hhhhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSI--IFDRGL-----IG-MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~--a~eRgl-----ig-~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.++|||+|||+|.++..++..+.. .|+++|.+ .++.. +..+.. +. ...+. ..+|++++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~lp~~~~FD~V~s~~v 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI--EQLPALKAFDTVFSMGV 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH--HHCCCcCCcCEEEECCh
Confidence 368999999999999999886532 25566666 34432 111111 11 11121 14677889999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|.. ++..+|.++.|+|||||.+++.+
T Consensus 199 l~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 199 LYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred hhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 99875 47789999999999999999863
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-11 Score=110.79 Aligned_cols=95 Identities=23% Similarity=0.431 Sum_probs=69.2
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCCCCcceeEeccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
+|||+|||+|+++..+++..- ..++.++|.+ +++..+.++ |+.. ...|.. ..|++++||+|++..+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~--~~~~~~~fD~I~~~~~l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA--KDPFPDTYDLVFGFEVIH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc--cCCCCCCCCEeehHHHHH
Confidence 699999999999999887421 0235556666 566666553 3321 112321 246678999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.+ ...++.++.|+|||||++++.+.
T Consensus 79 ~~~~---~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 79 HIKD---KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hCCC---HHHHHHHHHHHcCCCCEEEEEEc
Confidence 8864 67899999999999999999864
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=107.52 Aligned_cols=97 Identities=30% Similarity=0.389 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc--Cc---ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--GL---IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR--gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++...-...+..+|.+ .+++.+.++ +. +. ...|. ...+++ ++||+|++..++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccCCCCCCCceEEEEechh
Confidence 4689999999999999988742111256677776 577777776 11 11 11221 136788 999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|+.+ ...++.++.|+|||||++++.+
T Consensus 98 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLED---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccCC---HHHHHHHHHHHhcCCcEEEEEe
Confidence 98864 6789999999999999999875
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-11 Score=113.85 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|+.. +. ..++++|.+ +|++.+.++- +.....-.+.....+| ..||+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 358999999999998888752 21 256778887 6888887652 2110000011122344 56999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+.+ .+...++.++.|+|||||.+++.|.
T Consensus 135 l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998864 3467899999999999999999873
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-11 Score=114.13 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=87.2
Q ss_pred chhhhcccchhHHHHHHHHHHhcc-C-CCCCCCCeEEEeCCcchH----HHHHhhcCC----CEEEEecccCCc-ccHHH
Q 021643 137 SEEAFNKDTTHWYALVSDVYVGGL-A-INWSSVRNVMDMNASYGG----FAAALIDQP----LWVMNVVPIDAP-DTLSI 205 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~~y~~~l-~-i~~~~~r~VLD~GCG~G~----faa~L~~~~----v~v~~V~p~d~s-~~l~~ 205 (309)
....|-.+...|...... .+..+ . ...++..+|+|+|||+|. +|..|++.. .+...|.++|.+ .+++.
T Consensus 69 ~~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 69 NETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred CCCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 334677777788775542 22211 1 112334689999999995 565665531 123578899998 68988
Q ss_pred HHhcCc----------------------------------chhhhhccccCCCCC-CCcceeEeccccccccccCCHHHH
Q 021643 206 IFDRGL----------------------------------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADV 250 (309)
Q Consensus 206 a~eRgl----------------------------------ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~ 250 (309)
|.+.-. .-..+|.. ..++| ++||+|+|..+|+|+.+ .+...+
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~--~~~~~~~~fD~I~crnvl~yf~~-~~~~~~ 224 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLL--AESPPLGDFDLIFCRNVLIYFDE-PTQRKL 224 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCC--CCCCccCCCCEEEechhHHhCCH-HHHHHH
Confidence 875310 00123322 35667 99999999999999863 346789
Q ss_pred HHHHhhcccCCeEEEEEeCH
Q 021643 251 AVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 251 L~Em~RVLRPGG~lii~D~~ 270 (309)
+.+++|+|||||++++....
T Consensus 225 l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 225 LNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHhCCCeEEEEECcc
Confidence 99999999999999997543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-11 Score=104.51 Aligned_cols=98 Identities=19% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC--CCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT--YPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp--fP~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++ .+. ...+.++|.+ ++++.|.++ ++. . ...|. + .++ |++.||+|+++
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~-~-~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI-E-DLPQELEEKFDIIISN 80 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT-T-CGCGCSSTTEEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeeh-h-ccccccCCCeeEEEEc
Confidence 46899999999999999994 211 1246777877 688877763 441 1 11222 1 144 56899999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.+++|+.+ ...+|.++.|.|+|||.+++.+..
T Consensus 81 ~~l~~~~~---~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD---PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH---HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC---HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99987764 577999999999999999999865
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-11 Score=111.95 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=71.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCCCCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+++. .-...++++|.+ +|+..+.++ +. +. ...|.. .+++ ..||+|+++.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~--~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR--HVEI-KNASMVILNF 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChh--hCCC-CCCCEEeeec
Confidence 4589999999999998887641 011356777877 688887665 11 11 122221 1333 5699999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++|+++ .+...+|.+++|+|||||.++++|.
T Consensus 131 ~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 9998864 3467899999999999999999974
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-11 Score=112.54 Aligned_cols=96 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|..+..++.. +.. ..|..+|.+ .+++.+.++ |+. . ...+. ..+|++ ++||+|+++.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EALPVADNSVDVIISNC 154 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hhCCCCCCceeEEEEcC
Confidence 459999999999876655542 211 145667776 578777764 221 0 11222 247888 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|.++ ...++.|+.|+|||||++++.|
T Consensus 155 v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9987653 6789999999999999999975
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-11 Score=120.40 Aligned_cols=99 Identities=20% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c---c-hhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L---I-GMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l---i-g~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|++... .|+++|.+ .+++.+.++. . + ....|.....+|+| ++||+|+|+.+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 35899999999999999998643 45677777 5777665432 1 1 11122211246888 9999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+.+ .++..+|.+++|+|||||++++.|.
T Consensus 115 ~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 115 YLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9875 3467899999999999999999863
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.9e-11 Score=114.48 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=82.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc---ch-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL---IG-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++. +. ..++.+|.+ ++++.+.++.- +. ...|. ..+||+ ++||+|+++.+++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~--e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDA--EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccH--HhCCCCCCceeEEEEcChhh
Confidence 358999999999998888763 21 256677777 68888877531 11 11222 247898 9999999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCHH-----------------HHHHHHHHHHcCCCee
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-----------------MINKLKPVLHSLQWST 287 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-----------------~~~~i~~l~~~l~W~~ 287 (309)
|+.+ ...+|.|+.|+|||||.+++.+... ..+++.+++++..++.
T Consensus 190 ~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 190 YWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred hCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 8764 5679999999999999998865310 1355666777767764
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-11 Score=111.18 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCC--CEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.. .....+.++|.+ +++..|.++.. +. ...|. ..+||+ ++||+|++...
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~--~~lp~~~~sfD~I~~~~~--- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS--HRLPFADQSLDAIIRIYA--- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec--ccCCCcCCceeEEEEecC---
Confidence 4679999999999999987642 111257788888 68998887753 11 12221 258999 99999997532
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+ ..+.|+.|+|||||++++...
T Consensus 161 -~------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 161 -P------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred -C------CCHHHHHhhccCCCEEEEEeC
Confidence 1 147899999999999999864
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.8e-11 Score=106.84 Aligned_cols=106 Identities=17% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCC--CCC-CCcceeEeccc
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN--TYP-RTYDLLHSSFL 237 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~l--pfP-~sFDlVh~~~v 237 (309)
+...+++++||+|||.|.|+..|+.+- -.++.+|.+ ..++.+++|---.....|-...+ .+| ++||+|+++.+
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred cCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 566789999999999999999999862 457777887 58899988743111112222222 357 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+.++.+..++..++..+.+.|+|||.+|+-...
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999976667889999999999999999997543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.7e-11 Score=110.71 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=78.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH----hcCcc--hhhhhccccCCCCCCCcceeEecccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGLI--GMYHDWCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~----eRgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
.+|||+|||+|.++.+|++++. .|+++|.+ .+++.+. +.++. ....|.- ..+++++||+|+++.+|+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~--~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDIN--SASIQEEYDFILSTVVLMF 196 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechh--cccccCCccEEEEcchhhh
Confidence 4899999999999999998764 56677777 5666544 33441 1112211 1234589999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC---H-----------HHHHHHHHHHHcCCCeeeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT---L-----------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~-----------~~~~~i~~l~~~l~W~~~~~ 290 (309)
+. ..++..++.+|.|+|||||++++... . ---++++.+.+. |+....
T Consensus 197 l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LN-RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 75 34578899999999999999665321 0 113456666655 876654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.3e-10 Score=97.82 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=80.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++..+. .+..+|.+ .+++.+.++ ++. . ...|+ ...+ ++||+|+++-.++
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~----~~~~~~~fD~Vi~n~p~~ 93 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDL----FKGVRGKFDVILFNPPYL 93 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccc----ccccCCcccEEEECCCCC
Confidence 5799999999999999998764 46667776 566665543 221 1 11222 2233 8999999997776
Q ss_pred cccccC------------------CHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeeeee
Q 021643 240 DVTQRC------------------DIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ~~~~~~------------------~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~~~ 290 (309)
+..+.. -++++|.++.|+|||||.+++.+.... ..++.++++...++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 94 PLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 553210 156789999999999999999876554 667777777777776554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=105.99 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCcchHHHHHhhc----CCCEEEEecccCCc-ccHHHHHhcCcc-h---hhhhccccCCCCC-CCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDRGLI-G---MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~----~~v~v~~V~p~d~s-~~l~~a~eRgli-g---~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|++ .+. ...++++|.+ ++++.+.++... + ...+ + ..++++ ++||+|+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~-~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQAV-S-DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEEe-c-ccccccCCCccEEEE
Confidence 3456899999999999888864 222 2367888988 799988876321 1 1111 1 245667 89999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.+|+|+.+. ++..+|.||.|++| |.+++.|
T Consensus 136 ~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 136 NHFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 9999999753 46789999999999 5666665
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-10 Score=105.23 Aligned_cols=94 Identities=16% Similarity=0.269 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc-chhh-hhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-IGMY-HDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~-~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|.+. +. ..+.++|.+ ++++.|.++.. +... .+ ...||+ ++||+|+++.+++|+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d---~~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGS---LFDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEee---ccCCCCCCCEEEEEECChhhhC
Confidence 457999999999999999875 21 357788888 68998887532 1111 22 123888 999999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ..++..++.|+.|++ +|+++|.+
T Consensus 119 ~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 N-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred C-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 5 456889999999998 57888865
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-11 Score=97.36 Aligned_cols=90 Identities=22% Similarity=0.321 Sum_probs=63.8
Q ss_pred EEEeCCcchHHHHHhhcCC--CEEEEecccCCc-ccHHHHHhcCc-----ch-hhhhccccCCCCC-CCcceeEeccc-c
Q 021643 170 VMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFDRGL-----IG-MYHDWCESFNTYP-RTYDLLHSSFL-L 238 (309)
Q Consensus 170 VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s-~~l~~a~eRgl-----ig-~~~d~ce~~lpfP-~sFDlVh~~~v-~ 238 (309)
|||+|||+|..+..|.+.. ..-..+.++|.+ +++..+.++.- +. ...|. ..++++ ++||+|+|+.. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~--~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA--RDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT--TCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH--hHCcccCCCeeEEEEcCCcc
Confidence 7999999999999998742 011467788888 69998888762 11 22232 136677 89999999655 8
Q ss_pred ccccccCCHHHHHHHHhhcccCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGG 262 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG 262 (309)
+|+. +.+.+.++.++.++|||||
T Consensus 79 ~~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred CCCC-HHHHHHHHHHHHHHhCCCC
Confidence 8865 4568899999999999998
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-10 Score=102.45 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=81.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC--CC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT--YP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp--fP-~sFDlVh~ 234 (309)
...+|||+|||+|.++..|++..- ...+.++|.+ ++++.+.++ ++ +. ...|..+ .++ ++ ++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVE-VLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHH-HHHHHcCccccceEEE
Confidence 346899999999999999877421 1246677776 566666543 32 11 1122102 244 77 99999998
Q ss_pred cccccccc-----ccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCCeeeee
Q 021643 235 SFLLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 235 ~~v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
+....... .......+|.++.|+|||||.+++. +.......+.+.+..-.|.+...
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 75432111 1112467999999999999999986 55667777777777777776643
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=113.17 Aligned_cols=94 Identities=19% Similarity=0.307 Sum_probs=71.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC--cc--hhhhhccccCCCCCCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG--LI--GMYHDWCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg--li--g~~~d~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|+++..+++. +. .|+++|.+ ++++.+.++. +. -...| ....+++||.|++..+|+|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D----~~~l~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQD----YRDLNGQFDRIVSVGMFEH 240 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECc----hhhcCCCCCEEEEeCchhh
Confidence 358999999999999999874 43 56777877 6888887764 21 11112 1222589999999999998
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.. .+...++.++.|+|||||++++.+
T Consensus 241 vg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 241 VGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 853 346789999999999999999964
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-10 Score=120.33 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=73.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-ch-hhhhccccCCC--CC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IG-MYHDWCESFNT--YP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-ig-~~~d~ce~~lp--fP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+... -..+++++|.+ .|++.+.++. . +. ...| +. .+| |+ ++||+|+++.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD-a~-dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD-AI-NLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc-hH-hCccccCCCCEEEEEEch
Confidence 4689999999999998887642 12367788888 6888877652 1 11 1122 11 255 77 9999999999
Q ss_pred ccccccc----------cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQ----------RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~----------~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++++.+ ..++..+|.++.|+|||||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8886521 23578999999999999999999974
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=96.21 Aligned_cols=119 Identities=18% Similarity=0.189 Sum_probs=79.8
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--hhhhhccccCCCCCCCcc
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GMYHDWCESFNTYPRTYD 230 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g~~~d~ce~~lpfP~sFD 230 (309)
+.+.+. ...+|||+|||+|.++..++.+.. ...+..+|.+ .+++.+.++ ++. ..... ....+++++||
T Consensus 25 ~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D 99 (187)
T PRK08287 25 SKLELH--RAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKAD 99 (187)
T ss_pred HhcCCC--CCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCC
Confidence 344443 346899999999999998887421 1245666765 466665442 221 11111 11234558899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCee
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~ 287 (309)
+|+++.... .+..++.++.|+|+|||++++.. ..+..+++.+++++..++.
T Consensus 100 ~v~~~~~~~------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 100 AIFIGGSGG------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred EEEECCCcc------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 999876543 25668999999999999999976 4556778888888888853
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-10 Score=101.27 Aligned_cols=109 Identities=15% Similarity=0.227 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH----hcCc--chhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~----eRgl--ig~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|+..... ..|+.+|.+ ++++.+. +.|+ +.....-.+ .++..++||+|+|+. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~-~~~~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE-DFQHEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh-hccccCCccEEEehh-hh
Confidence 368999999999988887653211 235666766 4554443 2344 111111112 133348999999875 33
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 284 (309)
++.+++.++.|+|||||.+++........++..+.++++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 356689999999999999999987777777777776644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=98.39 Aligned_cols=99 Identities=24% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+..+|||+|||+|.++..+++....-..+..+|.+ .++..+.++.- + -...+.. ..+++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~--~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE--ALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh--cCCCCCCcEEEEEEeeee
Confidence 34689999999999999988753211245666665 46666665531 1 1122221 35677 899999999998
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|.. ++..++.++.++|||||++++.+.
T Consensus 117 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCcc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8765 477899999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=101.21 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC---CCcceeEecccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP---RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP---~sFDlVh~~~v~~~~~ 242 (309)
..+|||+|||+|.++.+++..+.. .+.++|.+ .+++.+.++.-.....+ ...++ .+||+|+|+....
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vvani~~~--- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVANILAN--- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEEcCcHH---
Confidence 468999999999999888776542 36677776 57777665421110111 12223 2799999874332
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
.+..++.++.|+|||||++++++... ..+.+...++...++....
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 24568999999999999999997543 4667777778877876543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-10 Score=106.03 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=73.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----ch----hhhhccccCCCCCCCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG----MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig----~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
++|||+|||+|-++..|++.+. +|+++|.+ +++++|.++-- .+ .+.--|..---.-..||.|+|+.+
T Consensus 91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 6799999999999999999885 56788888 68888887621 11 010001111112245999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
++|+.+ +..++.-+.+.|||||.++|++-..
T Consensus 168 leHV~d---p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 168 LEHVKD---PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHhC---HHHHHHHHHHHhCCCCceEeeehhh
Confidence 999975 7789999999999999999997543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.9e-10 Score=100.91 Aligned_cols=91 Identities=25% Similarity=0.357 Sum_probs=70.4
Q ss_pred CeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 168 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.+|||+|||.|.+.++|.+ +++.+..| +.. +.+..+.+||+....+|.-+....|| ++||.|+.+..+.++.+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 5899999999999999998 56655443 444 46888899999655555433334599 99999999999998864
Q ss_pred CCHHHHHHHHhhcccCCeEEEEE
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++.+|.||-|| |...|++
T Consensus 91 --P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 91 --PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred --HHHHHHHHHHh---cCeEEEE
Confidence 67899999777 5566665
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-10 Score=102.02 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhcccc------CCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCES------FNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~------~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++...-.-.|+++|.+.+... .++.-...|..+. .-+++ .+||+|+|+.+..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~---~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~ 128 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI---VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN 128 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC---CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence 358999999999999988875211113444444432211 1221112222110 01366 8999999986554
Q ss_pred cccccC-C-------HHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeeee-----cceEEEEE
Q 021643 240 DVTQRC-D-------IADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY-----HDQFLVGK 298 (309)
Q Consensus 240 ~~~~~~-~-------~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~-----~e~~li~~ 298 (309)
...+.. + .+.+|.++.|+|||||.|++... .+.+..++........-.... .|..+||+
T Consensus 129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 322110 1 25689999999999999999643 234444443333333221111 56677765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.7e-10 Score=103.93 Aligned_cols=136 Identities=16% Similarity=0.219 Sum_probs=85.0
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchh
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM 214 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~ 214 (309)
.|.....-..+.+.+ .+..+.. . ..+|||+|||+|.++.+++..+. ..+.++|.+ .+++.+.++. +...
T Consensus 137 aFgtG~h~tt~l~l~-~l~~~~~-~--g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 137 AFGTGTHPTTSLCLE-WLEDLDL-K--DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred cccCCCCHHHHHHHH-HHHhhcC-C--CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 454444444444443 3433221 2 26899999999999988877653 256677776 5777766542 2111
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeee
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~ 288 (309)
.........+++ +.||+|+++.+.. .+..++.++.|+|||||+++++... +-.+++.+.+++- |+..
T Consensus 211 ~~~~~~~~~~~~~~~fDlVvan~~~~------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 211 LQVKLIYLEQPIEGKADVIVANILAE------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred eEEEecccccccCCCceEEEEecCHH------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 111111134555 8999999986543 2456899999999999999998643 3455666665554 6543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.7e-10 Score=99.13 Aligned_cols=127 Identities=19% Similarity=0.250 Sum_probs=80.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcc--hhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLI--GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRgli--g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..++||+|||.|.-|.+|+++|.. |+++|.+ ...++|.++++. ....|.- ...+++.||+|++..+|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~--~~~~~~~yD~I~st~v~~ 105 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLN--DFDFPEEYDFIVSTVVFM 105 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC--CBS-TTTEEEEEEESSGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecch--hccccCCcCEEEEEEEec
Confidence 458999999999999999999864 4555555 234566667762 2223321 234568999999998998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HHHHHHHHHHHHc-CCCeeeeecceEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHS-LQWSTNIYHDQFLVGKK 299 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~-l~W~~~~~~e~~li~~K 299 (309)
|++ +..+.+++..|..-++|||++++... .+..-+-.+|... -.|+.....|.+--..|
T Consensus 106 fL~-~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~E~~g~~h~ 176 (192)
T PF03848_consen 106 FLQ-RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYNEDVGELHR 176 (192)
T ss_dssp GS--GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEEEEEEEEEE
T ss_pred cCC-HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEEccccceee
Confidence 886 45688999999999999999888421 1222222333322 24988776666544443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-10 Score=105.94 Aligned_cols=132 Identities=16% Similarity=0.257 Sum_probs=98.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch-hhhhccccCCC-CC-CCcceeEecccc
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFNT-YP-RTYDLLHSSFLL 238 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig-~~~d~ce~~lp-fP-~sFDlVh~~~v~ 238 (309)
..+..+++||+|||||-++.+|.+.- -.++++|.| ||+..|.+||+-. .++.-...|++ .. +.||+|.+..||
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 34568999999999999999998853 357889999 8999999999832 22211122554 33 899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-------------H---HHHHHHHHHHcCCCeeeee------------
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------E---MINKLKPVLHSLQWSTNIY------------ 290 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~---~~~~i~~l~~~l~W~~~~~------------ 290 (309)
.++.+ ++.++.-..+.|.|||.|.++-.. . -...++.++.+-..++...
T Consensus 199 ~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~p 275 (287)
T COG4976 199 PYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEP 275 (287)
T ss_pred Hhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCC
Confidence 98864 788999999999999999998321 0 1345677777777766543
Q ss_pred -cceEEEEEeC
Q 021643 291 -HDQFLVGKKG 300 (309)
Q Consensus 291 -~e~~li~~K~ 300 (309)
.+.+.|++|+
T Consensus 276 v~G~L~iark~ 286 (287)
T COG4976 276 VPGILVIARKK 286 (287)
T ss_pred CCCceEEEecC
Confidence 4556777664
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-10 Score=98.32 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=64.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCC-CCC-CCcceeEecccccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~l-pfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.+|||+|||+|.++.+|++... .++.++|.+ +++..+.++++.-...+. +..+ +++ ++||+|+|+.+++|+.+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~-~~~l~~~~~~sfD~Vi~~~~l~~~~d- 90 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDL-DEGLEAFPDKSFDYVILSQTLQATRN- 90 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEh-hhcccccCCCCcCEEEEhhHhHcCcC-
Confidence 4899999999999999976421 134566766 578888777753222332 2223 587 89999999999998864
Q ss_pred CCHHHHHHHHhhcccCC
Q 021643 245 CDIADVAVEMDRILRPG 261 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPG 261 (309)
...+|.||.|+++++
T Consensus 91 --~~~~l~e~~r~~~~~ 105 (194)
T TIGR02081 91 --PEEILDEMLRVGRHA 105 (194)
T ss_pred --HHHHHHHHHHhCCeE
Confidence 678999999987753
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-09 Score=103.65 Aligned_cols=100 Identities=17% Similarity=0.317 Sum_probs=68.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHh----cCcch----hhhhccccCCCCCCCcceeEecc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGLIG----MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~e----Rglig----~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+.++|||+|||+|.++..++++.-. ..++.+|.+.+++.+.+ .|+.. ..+|.. ..++| .+|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~--~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPE-LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY--KESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCC-CEEEEEecHHHHHHHHHHHHhCCccceEEEEecCcc--CCCCC-CCCEEEeEh
Confidence 34579999999999999999875311 23455565555655543 35422 222311 13455 479999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++++.+ .....+|.++.|.|||||+++|.|.
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9987753 3356799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-09 Score=96.49 Aligned_cols=97 Identities=27% Similarity=0.394 Sum_probs=69.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c---ch-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L---IG-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l---ig-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..++........+..+|.+ .+++.+.++. + +. ...|. ...+++ ++||+|+++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCCCCccEEEEec
Confidence 3589999999999998887753111356667776 5666666542 1 11 11222 135677 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++++.. +...+|.++.++|+|||.+++.+
T Consensus 130 ~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 888765 46789999999999999999865
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=85.40 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=61.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--hhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--GMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++...- ..+.++|.+ .+++.+.+ .++. ... .+. +...++. .+||.|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA-PEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc-cccChhhcCCCCEEEECCc
Confidence 358999999999999999875211 346667766 45555443 2221 111 111 1113444 79999998764
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+ ....++.++.|.|||||++++.
T Consensus 98 ~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 98 GG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 43 2457999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=95.98 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccC------CCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESF------NTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~------lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|+++..++++..-...|..+|.+.+. ...++.-...|..+.. -.++ ++||+|+++...+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~ 109 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPN 109 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCC
Confidence 3589999999999988887642111124444544322 1122211112221110 1256 7899999865321
Q ss_pred --------cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 --------DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 --------~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|.......+.+|.++.|+|||||.+++.
T Consensus 110 ~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 110 ISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1111112467999999999999999994
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=94.40 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhh---hhccccCC-CCCCCcceeEecccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMY---HDWCESFN-TYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~---~d~ce~~l-pfP~sFDlVh~~~v~~~ 240 (309)
+..+|||+|||+|.++..|++.+. .+.++|.+ +++..+.++...... ..+..... ..+++||+|++..+++|
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 356899999999999999998754 46777877 688887765321000 01111111 12389999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++. .++..++.++.|+++||+++.+...
T Consensus 132 ~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 753 3577899999999999988887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.6e-09 Score=91.57 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=85.4
Q ss_pred hhhcc--cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc
Q 021643 139 EAFNK--DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL 211 (309)
Q Consensus 139 e~F~~--d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl 211 (309)
..|.. +...++..+...-+..+.+.. ..+|||+|||+|.++..++..-.....|..+|.+ .+++.+.++ |+
T Consensus 13 ~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~ 90 (198)
T PRK00377 13 EEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV 90 (198)
T ss_pred HHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 34543 334665555431223344433 3589999999999988776521011245666776 466655443 32
Q ss_pred c---hh-hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCC
Q 021643 212 I---GM-YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 212 i---g~-~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W 285 (309)
. .. ..|.. ..++.. ..||.|++... ..++..++.++.|+|||||++++. -..+.+.++...++...+
T Consensus 91 ~~~v~~~~~d~~-~~l~~~~~~~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 91 LNNIVLIKGEAP-EILFTINEKFDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred CCCeEEEEechh-hhHhhcCCCCCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 1 11 11211 123333 78999988532 134678999999999999999884 245566777777777777
Q ss_pred eeee
Q 021643 286 STNI 289 (309)
Q Consensus 286 ~~~~ 289 (309)
+..+
T Consensus 164 ~~~~ 167 (198)
T PRK00377 164 NLEI 167 (198)
T ss_pred CeEE
Confidence 5443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-09 Score=100.03 Aligned_cols=100 Identities=22% Similarity=0.394 Sum_probs=74.6
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHH----HHHhcCcc----hhhhhccccCCCCCC
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLS----IIFDRGLI----GMYHDWCESFNTYPR 227 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~----~a~eRgli----g~~~d~ce~~lpfP~ 227 (309)
+.+++++| .+|||+|||-|+++.+++++ ++.| ++++.| ++.. .+.++|+. -.++|| -.+..
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V---~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e 136 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTV---VGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEE 136 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEE---EEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----ccccc
Confidence 35667665 58999999999999999985 6654 445555 4444 35566774 223443 23345
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.||-|++...|+|+.. ....+++.-++++|+|||.+++-
T Consensus 137 ~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 137 PFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 6999999999999874 56789999999999999998885
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=94.17 Aligned_cols=99 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH----Hhc-Ccchhhhhcccc--CCCCCCCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDR-GLIGMYHDWCES--FNTYPRTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a----~eR-glig~~~d~ce~--~lpfP~sFDl 231 (309)
+.+.++ .+|||+|||+|.++..|++.-- ...|.++|.+ .|++.+ .++ ++.....|..+. ..+++.+||+
T Consensus 68 l~i~~g--~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 68 FPIKKG--SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred CCCCCC--CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 445444 5899999999999999987521 1246666776 455533 333 222222232111 1233467999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
|++.. .+......+|.|+.|+|||||+++|
T Consensus 145 i~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 145 IYQDV-----AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEECC-----CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 97542 2211234568999999999999999
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=88.31 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=77.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-----chhhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-----IGMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-----ig~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+.++ .++..+|.+ +++..+.++ ++ .....|+ ..+++ ++||+|.++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FEPFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cccccccCceEEEEC
Confidence 3589999999999999998874 356667776 566665432 22 1122332 34566 789999987
Q ss_pred cccccccc------------------cCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~ 289 (309)
.-+.+..+ ...+..++.++.|+|||||.+++.... ...+.+..++....++...
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 54432110 112567899999999999998876432 2345677777777776543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-09 Score=94.04 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCC-CCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTY-PRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpf-P~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++.+. .++.+|.+ .++..+.++ +. +. ...+. +..... +++||+|+++.+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV-EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhcCCCCCccEEEehhH
Confidence 45899999999999998887653 35566666 466665543 22 11 11111 111222 389999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|.. +...+|.++.++|+|||.+++.+.
T Consensus 122 l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 122 LEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 98876 467899999999999999998753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.7e-09 Score=93.61 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+. .+..+|.+ ++++.+.++- +.... .+-...++++ ++||+|++..+++|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNI-TFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCc-EEEEcCchhccCCcCEEEEcchhhc
Confidence 46899999999999999988764 36777877 6888777652 11111 1111235566 89999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++ .++..++.++.|++++|+.+.+..
T Consensus 140 ~~~-~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 140 YPQ-EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred CCH-HHHHHHHHHHHhhcCCeEEEEECC
Confidence 764 357789999999887666555443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-09 Score=92.73 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--chhhhhccccC--CCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMYHDWCESF--NTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig~~~d~ce~~--lpfP-~sFDlVh~~~ 236 (309)
...|||+|||+|.++..|+.+... .++.++|.+ .++..+.+ .|+ +...+.-.... ..++ ++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 358999999999999999875311 256666666 46655543 333 11111101111 1256 7999998874
Q ss_pred ccccc-----cccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHH
Q 021643 237 LLSDV-----TQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLH 281 (309)
Q Consensus 237 v~~~~-----~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~ 281 (309)
-..+. ..+...+.++.++.|+|||||.+++. |.....+.+.+.+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~ 146 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLS 146 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 33211 11122357899999999999999886 55555555544443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.2e-09 Score=94.81 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=98.5
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc-----chhhhhccccCCCCC-CCcceeE
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl-----ig~~~d~ce~~lpfP-~sFDlVh 233 (309)
+...+.++|.|+|||+|.....|.++ +. -.|+++|.| +|++.|.+|.. .+.+++|| | +.+|+++
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~~~dllf 97 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQPTDLLF 97 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCCccchhh
Confidence 44466889999999999999999986 32 247899999 79999999986 35666665 5 8899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC--HH--HHHHHHHHHHcCCCeeeee-------------------
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--LE--MINKLKPVLHSLQWSTNIY------------------- 290 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--~~--~~~~i~~l~~~l~W~~~~~------------------- 290 (309)
++-+|+-+++ ..++|.-.---|.|||.+.+.-. .+ .=.-|++.++..-|.....
T Consensus 98 aNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 98 ANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 9999987764 45688888899999999999722 11 2234556666556653322
Q ss_pred ---cceEEEEEeCcCCCC
Q 021643 291 ---HDQFLVGKKGFWRPT 305 (309)
Q Consensus 291 ---~e~~li~~K~~w~~~ 305 (309)
..++=||.+.|-.+-
T Consensus 175 a~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 175 APLACRVDIWHTTYYHQL 192 (257)
T ss_pred CcccceeeeeeeeccccC
Confidence 456777877776543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.3e-09 Score=93.33 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..+.+.+. .++.+|.+ .++..+.++ ++.. ...+.. .....+ ++||+|+++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAE-ELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHH-HhhhhcCCCccEEEEhhH
Confidence 346799999999999999988754 45666766 466666554 2211 111211 122234 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|..+ ...+|.++.|+|+|||.+++.+.
T Consensus 124 l~~~~~---~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 124 LEHVPD---PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhccCC---HHHHHHHHHHHcCCCcEEEEEec
Confidence 998764 67799999999999999999753
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.7e-09 Score=94.23 Aligned_cols=95 Identities=16% Similarity=0.102 Sum_probs=66.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH-HhcCcch------------------hhhhccccCCCCC-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIG------------------MYHDWCESFNTYP- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a-~eRglig------------------~~~d~ce~~lpfP- 226 (309)
.+|||+|||.|..+.+|+++|. +|+++|.+ .+++.+ .+.|+.. ...|..+ ..+..
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~~~~ 111 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTAADL 111 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCcccC
Confidence 5899999999999999999875 56777777 456553 3334310 1222111 11112
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+||.|+-..+++|++. .....++..|.|.|||||++++.
T Consensus 112 ~~fD~i~D~~~~~~l~~-~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 GPVDAVYDRAALIALPE-EMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCcCEEEechhhccCCH-HHHHHHHHHHHHHcCCCCeEEEE
Confidence 67999999999998863 45678999999999999975443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=93.61 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=68.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH-HhcCcchh--------------hhhccccCCCC---C-C
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII-FDRGLIGM--------------YHDWCESFNTY---P-R 227 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a-~eRglig~--------------~~d~ce~~lpf---P-~ 227 (309)
.+|||+|||.|..+.+|+++|. +|+++|.+ .+++.+ .++|+... +.-++.....+ . .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 5899999999999999999885 56777877 456644 45565211 00011122322 4 6
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
+||+|+-..+|+|++. ....+++..+.++|||||.+++
T Consensus 116 ~fd~v~D~~~~~~l~~-~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPE-EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCH-HHHHHHHHHHHHHcCCCCeEEE
Confidence 8999999999999863 4567899999999999986444
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=96.43 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=66.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCcccHHHHHhcCcch------hhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSIIFDRGLIG------MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s~~l~~a~eRglig------~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.++|||+|||.|.++-.++.++. .|+.|.|.... ..++..-+.+++ .+-.--| .+|..++||+|+|-+||.
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE-~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVE-DLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchh-hccccCCcCEEEEeeehh
Confidence 47999999999999988888765 45555554332 223322222211 0000001 355569999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|..+ +...|.++...|||||.+|+-
T Consensus 194 Hrr~---Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 194 HRRS---PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred ccCC---HHHHHHHHHHhhCCCCEEEEE
Confidence 8764 678999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-08 Score=98.00 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=73.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-----chhhhhccccCCCCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-----IGMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-----ig~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
.+|||+|||+|..+..++++... ..|+.+|.+ .+++.+.+. +. +..+.+ .....++ .+||+|+|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~--D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN--NALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEc--cccccCCCCCEEEEEECc
Confidence 58999999999999999875311 256777877 577776643 11 111111 1123345 7999999987
Q ss_pred cccccc--ccCCHHHHHHHHhhcccCCeEEEEEe--CHHHHHHHHHHHH
Q 021643 237 LLSDVT--QRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLH 281 (309)
Q Consensus 237 v~~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~ 281 (309)
-|+... ......+++.+..|+|||||.+++.- ..++..+++++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg 355 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 355 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC
Confidence 775322 11124678999999999999988874 3455666666543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-09 Score=96.24 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=75.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhc---cc-cCCCC---CCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDW---CE-SFNTY---PRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~---ce-~~lpf---P~sFDlVh~~~v~ 238 (309)
-+.++|+|||+|-.+..+++.. -+|+++|.+ .||+++.+.-.+...|.- .+ ...++ ++|.|||.|..++
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 4589999999994444445543 357788888 699988765433212110 00 01222 4999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCe-EEEE---EeCHHHHHHHHHHHHcCCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGG-YVLV---QDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG-~lii---~D~~~~~~~i~~l~~~l~W~ 286 (309)
| ++++++++.+++|||||.| .+.+ +|..-...++.++..+++|+
T Consensus 111 H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 111 H----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred H----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 6 5678999999999999977 4333 44433455566666666665
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-08 Score=89.10 Aligned_cols=129 Identities=21% Similarity=0.407 Sum_probs=81.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc---Cc---ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GL---IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR---gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..++.... ...+..+|.+ .+++.+.++ +. +. ...|+ ..+++ ++||+|+++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 45799999999999999987531 1246667776 566666654 21 11 11222 34555 89999998622
Q ss_pred ccc------ccc-----------------cCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe-eeee---
Q 021643 238 LSD------VTQ-----------------RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS-TNIY--- 290 (309)
Q Consensus 238 ~~~------~~~-----------------~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~-~~~~--- 290 (309)
+.. ... ......++.++.++|||||++++.-....-+.++.++....+. +...
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 110 000 0114578899999999999999976555556677777766654 2221
Q ss_pred --cceEEEEEe
Q 021643 291 --HDQFLVGKK 299 (309)
Q Consensus 291 --~e~~li~~K 299 (309)
.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 566666654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=89.75 Aligned_cols=115 Identities=20% Similarity=0.352 Sum_probs=76.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--hh-hhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GM-YHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g~-~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..++.... ...+.++|.+ .+++.+.+. |+. .. ..| ...+++ ++||+|+|+--+
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d---~~~~~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSD---WFEPLPGGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc---hhccCcCCceeEEEECCCC
Confidence 4799999999999999987521 1245666765 466555432 331 11 122 123577 899999996332
Q ss_pred cc------cccc-----------------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 239 SD------VTQR-----------------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~------~~~~-----------------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
.. +... .....++.++.|+|+|||.+++.......+.++++++...++
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFA 235 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCC
Confidence 21 1100 012467899999999999999987666667788888777775
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-08 Score=74.91 Aligned_cols=94 Identities=24% Similarity=0.360 Sum_probs=62.6
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH---hcCc---chhh-hhccccCCCCC-CCcceeEeccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF---DRGL---IGMY-HDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~---eRgl---ig~~-~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
+|+|+|||+|.++..+...+ ...+..+|.+ +.+..+. +.+. +..+ .+.. ...+.+ ++||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAE-ELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChh-hhccccCCceEEEEEcccee
Confidence 48999999999999888732 1345556655 3444443 1111 1111 2221 122234 8999999999988
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+. ......++..+.+.|||||.+++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 63 234678999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=96.00 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=64.3
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhc-Ccchhhhhcccc-CCCCC-CCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDR-GLIGMYHDWCES-FNTYP-RTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eR-glig~~~d~ce~-~lpfP-~sFDl 231 (309)
+.|.++ .+|||+|||+|.|+..+++.--..-.|.++|.+ +++..+.+| ++.....|.... ....+ .+||+
T Consensus 128 l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 345444 589999999999999998852000123444544 356666654 444444443211 12234 78999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|+++... ..+...++.|++|+|||||+|+|.
T Consensus 206 V~~Dva~-----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-----cchHHHHHHHHHHhccCCCEEEEE
Confidence 9987632 223445778999999999999994
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-08 Score=90.27 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhh-hhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.+++.|++.-.-.-.|..+|.+ ++++.+.++ |+. ... .|. . ....+ ++||.|++..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-K-RGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc-c-cCCccCCCccEEEEcc
Confidence 3589999999999998887631000135556665 455555432 331 111 221 1 12223 8999999987
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+.++ ..|+.|+|+|||++++..
T Consensus 151 ~~~~~---------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTI---------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchh---------hHHHHHhcCcCcEEEEEE
Confidence 77544 347889999999998864
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-08 Score=92.27 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=67.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----c--c-hhhhhccccCCC-CC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L--I-GMYHDWCESFNT-YP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----l--i-g~~~d~ce~~lp-fP-~sFDlVh~~ 235 (309)
...||.+|||||.--.++-..+. -+|+.+|.+ +|-+++..+- + . -++++ .| .+| .+ .|||.|+|.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~--~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~-ge-~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPI--NSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD-GE-NLPQLADGSYDTVVCT 152 (252)
T ss_pred ccceEEecccCCCCcccccCCCC--ceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec-hh-cCcccccCCeeeEEEE
Confidence 34689999999976555543332 245556665 4555544331 1 1 12222 23 566 78 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.++-... +.++.|.|+.|+|||||.+++-++.
T Consensus 153 lvLCSve---~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 153 LVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEEeccC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 9997544 4789999999999999999999875
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.7e-08 Score=87.68 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=70.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++..+. ..++.+|.+ .++..+.++ |+. . ...|+ ...++ ++||+|+++--+.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---ARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hhhccCCCeeEEEECCCCC
Confidence 5899999999999999887653 246667776 466655442 331 1 11232 12356 8999999974322
Q ss_pred cccc------------------cCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCe
Q 021643 240 DVTQ------------------RCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS 286 (309)
Q Consensus 240 ~~~~------------------~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~ 286 (309)
+-.. ...+.+++.++.|+|||||.+++..... ...++.+++++-.++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~ 178 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLD 178 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCC
Confidence 1110 0015678899999999999999843221 233444444444554
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-08 Score=87.75 Aligned_cols=70 Identities=23% Similarity=0.278 Sum_probs=53.0
Q ss_pred ccCCc-ccHHHHHhcCc---------chhhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEE
Q 021643 196 PIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV 264 (309)
Q Consensus 196 p~d~s-~~l~~a~eRgl---------ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~l 264 (309)
++|.+ +|++.|.+|.- +.....-++ .+||+ ++||+|.+..+++++. +...+|+|++|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~-~lp~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAI-DLPFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechh-hCCCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 46777 69998865521 111111122 58999 8999999999998876 4688999999999999999
Q ss_pred EEEeC
Q 021643 265 LVQDT 269 (309)
Q Consensus 265 ii~D~ 269 (309)
+|.|-
T Consensus 78 ~i~d~ 82 (160)
T PLN02232 78 SILDF 82 (160)
T ss_pred EEEEC
Confidence 99874
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.70 E-value=7e-08 Score=90.98 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=84.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC-CCcceeEec--
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
.+|||+|||+|.++..|+...- ...+.++|.+ .++..+.+. |+. -...|+ ..+++ +.||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hccCcCCCccEEEECCC
Confidence 4799999999999999987421 1246677777 577666653 331 112343 23556 589999986
Q ss_pred -----------ccccccccc---------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHH-cCCCee-eee---
Q 021643 236 -----------FLLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH-SLQWST-NIY--- 290 (309)
Q Consensus 236 -----------~v~~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~-~l~W~~-~~~--- 290 (309)
.++.|.+.. .....++.+..+.|+|||++++......-+.+..+.. ...|.. ...
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~ 271 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDL 271 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCC
Confidence 122222210 1256789999999999999999877666677787776 456643 233
Q ss_pred --cceEEEEEeC
Q 021643 291 --HDQFLVGKKG 300 (309)
Q Consensus 291 --~e~~li~~K~ 300 (309)
.++++++++.
T Consensus 272 ~g~~R~~~~~~~ 283 (284)
T TIGR00536 272 NGKERVVLGFYH 283 (284)
T ss_pred CCCceEEEEEec
Confidence 5777777653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=95.68 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=68.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------Cc--chhhhhccccCCCCCCC-----ccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL--IGMYHDWCESFNTYPRT-----YDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------gl--ig~~~d~ce~~lpfP~s-----FDlV 232 (309)
..+|||+|||+|.++..|++.......++++|.| +||+.+.++ ++ .+...|..+ .++++.. ..++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~-~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ-PLALPPEPAAGRRLGF 142 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc-hhhhhcccccCCeEEE
Confidence 3589999999999999998753112467899999 688888765 12 123344322 2445522 3345
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++...+.++. ..+...+|+++.++|+|||.|+|.
T Consensus 143 ~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5556677765 345678999999999999999984
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.1e-08 Score=94.35 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=76.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
.+|||+|||+|.++..++++.-. ..++.+|.+ .++..+.+ .++.+.... .......++.||+|+|+--||+..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~-~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEVFA-SNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEE-cccccccCCCccEEEECCCccCCc
Confidence 47999999999999999875311 246677776 56666543 233221111 111122248999999998887532
Q ss_pred c--cCCHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHHcCCCeeeeecceEEE
Q 021643 243 Q--RCDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLHSLQWSTNIYHDQFLV 296 (309)
Q Consensus 243 ~--~~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~~l~W~~~~~~e~~li 296 (309)
. ....++++.++.|.|||||.++|..+ ..+-..+++.... .+......++-|
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~--~~~la~~~~f~v 331 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS--HEVLAQTGRFKV 331 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC--eEEEEeCCCEEE
Confidence 1 22367899999999999999977643 2333444444332 244444444433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-07 Score=82.42 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=69.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|..+..++.+... ..|..+|.+ ++++.+.+. ++. . ..+|+ ..+.+ ..||+|+|+-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEALPDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTCCTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccccccceeEEEEccc
Confidence 458999999999999999986432 236667776 566665442 332 1 22232 34556 99999999844
Q ss_pred cccccc--cCCHHHHHHHHhhcccCCeEEEEE--eCHHHHHHHHHHHH
Q 021643 238 LSDVTQ--RCDIADVAVEMDRILRPGGYVLVQ--DTLEMINKLKPVLH 281 (309)
Q Consensus 238 ~~~~~~--~~~~~~~L~Em~RVLRPGG~lii~--D~~~~~~~i~~l~~ 281 (309)
++.-.+ ..-..+++.+..+.|||||.+++. .....-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 332111 112578999999999999988543 33334444555544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-08 Score=95.52 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=69.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccH----HHHHhcCcc--h-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL----SIIFDRGLI--G-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l----~~a~eRgli--g-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+||+|||+|.++..++...-. .++.++|.+ .++ ..+.++|+. . +..|.-+-...+| ++||.|++++-.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 47999999999999999975311 245566665 344 344445551 1 1222111123578 999999986432
Q ss_pred ccccccC----CHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHH
Q 021643 239 SDVTQRC----DIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL 280 (309)
Q Consensus 239 ~~~~~~~----~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~ 280 (309)
. |+... -...+|.|+.|+|||||.+.++ |..++.+.+.+..
T Consensus 203 P-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~ 248 (390)
T PRK14121 203 P-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELF 248 (390)
T ss_pred C-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHH
Confidence 2 22111 1257999999999999998886 5555555544444
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=89.93 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=76.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC--CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP--RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP--~sFDlVh~~~v~ 238 (309)
+.++|||+|||+|-++.+.++.|.. .+.++|.- .+++.+++. |+....+.-.-..+..+ +.||+|+||- +
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 3579999999999999888887642 24455553 355555543 33210111011135566 5999999985 4
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
.+. +..+..++.|.|||||+++++--.+ ..+.+.+.+.+-.|++.-.
T Consensus 239 A~v-----l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 AEV-----LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HHH-----HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 322 4568999999999999999995432 3556666666667776543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-08 Score=90.37 Aligned_cols=101 Identities=17% Similarity=0.294 Sum_probs=74.2
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc------chhhhhccccCC--CCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFN--TYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl------ig~~~d~ce~~l--pfP-~sFDlVh~~~ 236 (309)
.+||.+|||.|...--|.+. +---+.|-+.|.+ +++.+..++-- .....|.+...+ |.+ +++|+|.+.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 38999999999987666652 2112456777887 67777665532 223345444433 334 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.++. ..+..++..+.|+|||||.++++|-
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeec
Confidence 9998863 5688999999999999999999983
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-08 Score=89.16 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=82.0
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhh--hhccccCCCCC-CCcceeEe
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--HDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~d~ce~~lpfP-~sFDlVh~ 234 (309)
.++++.+..+-|||||||+|--+..|.+.+- -.+++|.| .||++|.+|-+.|.+ .|-. .-+||+ +|||-+++
T Consensus 43 LLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 43 LLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EGLPFRPGTFDGVIS 118 (270)
T ss_pred HhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CCCCCCCCccceEEE
Confidence 4555555568899999999999999988762 23566777 699999987654322 2322 369998 99999998
Q ss_pred cccccccc--------ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHH
Q 021643 235 SFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLH 281 (309)
Q Consensus 235 ~~v~~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~ 281 (309)
...+.-+- ....+..++.-++..|++|+..++.=-.+..+.++.|.+
T Consensus 119 ISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~ 173 (270)
T KOG1541|consen 119 ISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQ 173 (270)
T ss_pred eeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHH
Confidence 65553111 011255678889999999999999854443344444443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=86.34 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
.-.|-|+|||-+.+|..+... .|...++++.... ++ .-|. +..|.+ ++.|++++...| ..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~----------Vt--acdi--a~vPL~~~svDv~VfcLSL--MG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR----------VT--ACDI--ANVPLEDESVDVAVFCLSL--MG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT----------EE--ES-T--TS-S--TT-EEEEEEES-----S--
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC----------EE--EecC--ccCcCCCCceeEEEEEhhh--hC--
Confidence 458999999999999887542 3444444443211 11 1121 368999 999999875444 32
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeeeee
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~ 290 (309)
.++.++|.|.+|||||||.+.|.+-.. -++..-+..+++..+....
T Consensus 135 Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 135 TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEE
T ss_pred CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEec
Confidence 357889999999999999999997544 3445556667888887765
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.4e-08 Score=93.31 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=64.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-------hhhhhccccCCCC-CCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-------GMYHDWCESFNTY-PRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-------g~~~d~ce~~lpf-P~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++++. +|+++|.+ +|++.+.++.-. ....++....++. +++||+|+|..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 35899999999999999998764 57788888 689888776321 0111111112333 489999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++|+++. ....++..+.+ +.+||.++.
T Consensus 222 L~H~p~~-~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred EEecCHH-HHHHHHHHHHh-hcCCEEEEE
Confidence 9998642 34456677765 456666443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8e-08 Score=87.02 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=57.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.+++.|+....-...|+.+|.+ ++++.+.++ |+ +. ...|- . ..+.+ +.||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~-~-~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG-T-LGYEENAPYDRIYVTAA 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc-c-cCCCcCCCcCEEEECCC
Confidence 4689999999999998887641101134555655 466666543 32 11 11221 1 12334 89999998766
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.++ ..++.+.|||||.+++--
T Consensus 155 ~~~~---------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 155 GPDI---------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cccc---------hHHHHHhhCCCcEEEEEE
Confidence 5432 346677899999998853
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-07 Score=90.43 Aligned_cols=148 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCC---EEEEecccCCcccHHHHHhcCcchhhh
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAPDTLSIIFDRGLIGMYH 216 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v---~v~~V~p~d~s~~l~~a~eRglig~~~ 216 (309)
.|-..+.---+.+.+ ++..+. .. ..+|||+|||+|-+|.+-++.|. ...++.|.....+.+.+...|+...+.
T Consensus 139 AFGTG~H~TT~lcl~-~l~~~~-~~--g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLE-LLEKYV-KP--GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHHH-HHHHHS-ST--TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHHH-HHHHhc-cC--CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 565554444455553 554432 12 35999999999998776666553 333333332222334444445422111
Q ss_pred hccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeeeee----
Q 021643 217 DWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY---- 290 (309)
Q Consensus 217 d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~---- 290 (309)
. ......+ ..||+|.|+-... -+..++.++.+.|+|||+++++--. +..+.+.+..+. .++..-.
T Consensus 215 -v-~~~~~~~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 215 -V-SLSEDLVEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG 285 (295)
T ss_dssp -E-SCTSCTCCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET
T ss_pred -E-EEecccccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC
Confidence 0 0124456 9999999985443 1456888999999999999998432 233455555555 6665433
Q ss_pred cceEEEEEeC
Q 021643 291 HDQFLVGKKG 300 (309)
Q Consensus 291 ~e~~li~~K~ 300 (309)
.--.++++|+
T Consensus 286 ~W~~l~~~Kk 295 (295)
T PF06325_consen 286 EWVALVFKKK 295 (295)
T ss_dssp TEEEEEEEE-
T ss_pred CEEEEEEEeC
Confidence 2224555553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-07 Score=92.41 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..|+.. +. ..+.++|.+ .+++.+.++ |. + -...|+.+...+-.++||+|+|+-=+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 48999999999999988763 21 246677777 577776654 32 1 122333221122126899999963111
Q ss_pred -------------ccc------ccCC---HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee-e-----c
Q 021643 240 -------------DVT------QRCD---IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI-Y-----H 291 (309)
Q Consensus 240 -------------~~~------~~~~---~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~-~-----~ 291 (309)
|.+ ...+ ...++.+..+.|+|||++++.-..+.-+.+++++++..|+... . .
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~ 410 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGL 410 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCC
Confidence 000 0011 3477888889999999998876666677888888888776432 2 6
Q ss_pred ceEEEEEeC
Q 021643 292 DQFLVGKKG 300 (309)
Q Consensus 292 e~~li~~K~ 300 (309)
++++++++.
T Consensus 411 dR~v~~~~~ 419 (423)
T PRK14966 411 DRVTLGKYM 419 (423)
T ss_pred cEEEEEEEh
Confidence 788887753
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=86.02 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=57.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.+++.|++..-....|..+|.+ ++++.+.++ |+ +. ...|.. ..... ..||+|+++..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~--~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGT--QGWEPLAPYDRIYVTAA 155 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcc--cCCcccCCCCEEEEcCC
Confidence 4589999999999999998752111124555655 466655543 43 11 122321 11223 78999998765
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
..+ +..++.+.|+|||++++.
T Consensus 156 ~~~---------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 156 GPK---------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ccc---------ccHHHHHhcCcCcEEEEE
Confidence 443 345678999999999885
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.5e-08 Score=87.91 Aligned_cols=101 Identities=23% Similarity=0.389 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEeccccc
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
+...+.++|+|+|+|+|.++.+++++ +-. .++-.|.+..++.+.+.. +.-.-+|+ +-|+|. +|+++.+++||
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 34556789999999999999999873 311 233345554444444421 22223342 467788 99999999999
Q ss_pred cccccCCHHHHHHHHhhcccCC--eEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPG--GYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPG--G~lii~D~ 269 (309)
+|.+ .+...+|+.+.+.|+|| |.++|.|.
T Consensus 170 ~~~d-~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 170 DWSD-EDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp GS-H-HHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hcch-HHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 9975 45678999999999999 99999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.4e-07 Score=80.55 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..++...- ...|..+|.+ .+++.+.++ |+ +.....-++..++.. ..+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 46899999999999988875310 1245666665 466655442 33 111111011112222 4467665421
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQ 284 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~ 284 (309)
...+..++.++.|+|+|||++++.... +.+..+.+..+.+.
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 134678999999999999999988643 34455556665543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-07 Score=87.82 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=73.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++.+|+.... ...+.++|.+ .+++.+.++ |+. . ...|. ..+++ ++||+|+++=
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 35899999999999999987521 1246677777 577666554 431 1 11221 23456 7899999861
Q ss_pred ------cc-------ccccc------c---CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 237 ------LL-------SDVTQ------R---CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 237 ------v~-------~~~~~------~---~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
.+ .|.+. . .....++.++.++|+|||++++.-.... +.++++.....|
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 11 11110 0 0135789999999999999998655433 677777765433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=89.23 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=71.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--h-hhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--M-YHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~-~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||.|||+|+++...+..+. .+.++|.+ .++..+..+ |+.. . ..|. ..+|++ ++||+|+++-=
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~--~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA--TKLPLSSESVDAIATDPP 257 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch--hcCCcccCCCCEEEECCC
Confidence 35899999999999877665543 45666776 466654432 3321 1 2232 247787 89999999622
Q ss_pred cc---cccc--c-CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 238 LS---DVTQ--R-CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 238 ~~---~~~~--~-~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
+. .... . .-..++|.++.|+|||||++++....+ ..++++++.-.|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 11 1110 0 114789999999999999988876543 244556666666
|
This family is found exclusively in the Archaea. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.2e-07 Score=85.05 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=83.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---chhhh-hccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYH-DWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~-d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|..+..|+++ +- ..|++++.. .+.+.|.+. ++ +.+++ |.-+-.-..+ .+||+|+|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 678999999999999999987 31 234555554 233333321 12 22222 2111122344 689999997
Q ss_pred ccc---------------ccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 236 FLL---------------SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~---------------~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
==+ .++.-.++++++++=..++|||||++.+.-..+-+.++-.++++++|....
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 111 122334679999999999999999999999999999999999999999754
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-07 Score=86.89 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=70.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEecc-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSSF- 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~- 236 (309)
.+|||+|||+|.++.+|+.... ...++++|.+ .+++.|.+. |+ +. ...|+ ..++| ++||+|+|+=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FAALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hhhCCCCCccEEEECCC
Confidence 5799999999999999987421 1356777877 567666544 43 11 11232 22456 7999999861
Q ss_pred -----c-------cccccc------cC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcC
Q 021643 237 -----L-------LSDVTQ------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSL 283 (309)
Q Consensus 237 -----v-------~~~~~~------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l 283 (309)
- +.|.+. .. ....++.++.+.|+|||++++....+ ..++.++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 0 112111 01 13578999999999999999864433 34576666543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-07 Score=76.56 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=60.8
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+|||+|.++.++++.+ ...+..+|.. ..++.+..+ ++ +. ...|..+...+++ ++||+|+++--+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 79999999999999988765 2355666665 345555443 22 11 1112211112467 999999998655
Q ss_pred cccc-----ccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVT-----QRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.... .......++.++.|+|||||.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4321 1123567899999999999998875
|
... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-07 Score=86.69 Aligned_cols=132 Identities=10% Similarity=0.095 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHh-----cCcc----hhhhhccccCCCCC-CCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFD-----RGLI----GMYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~e-----Rgli----g~~~d~ce~~lpfP-~sFDlVh 233 (309)
..++|+|+|||.|++.+.+.. .-.-...+..+|.+ ++++.|++ .|+- -..+|..+ .+-+ +.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~--~~~~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD--VTESLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh--cccccCCcCEEE
Confidence 568999999998876555432 11111235556665 45554443 2331 11123211 2223 8899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeeeee-------cceEEEEEeCc
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY-------HDQFLVGKKGF 301 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~-------~e~~li~~K~~ 301 (309)
+. +++++. ..+..++|..+.|.|||||+++++-... .+-..-....--.|+.... -.-+.|++|.-
T Consensus 201 ~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 201 LA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred Ee-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 99 887773 3467899999999999999999985211 1111000001116765443 34578888865
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.3e-07 Score=80.91 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chh-hhhccccCCCCC--CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGM-YHDWCESFNTYP--RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~-~~d~ce~~lpfP--~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+.... .+..+|.+ ++++.+.++ |+ +.. ..| ...+++ ++||+|++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD---GWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC---cccCCCcCCCcCEEEEcc
Confidence 46899999999999988877532 35555655 466655543 33 111 112 122333 7999999876
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+.+ +..++.+.|+|||.+++.-.
T Consensus 153 ~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 153 AAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred Cchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 5543 34567899999999998644
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.8e-07 Score=89.49 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred cchhHHHHHH-HHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----------
Q 021643 144 DTTHWYALVS-DVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----------- 210 (309)
Q Consensus 144 d~~~W~~~v~-~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----------- 210 (309)
.=.+|.+.+. ..|...+. ...+..+|||+|||-||=..-....++ -.++++|.+ ..++.|.+|-
T Consensus 40 ~fNNwvKs~LI~~~~~~~~-~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVK-QNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCC-CTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred HHhHHHHHHHHHHHHHhhh-ccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 3356766443 23544322 112457999999999883333333332 345666776 4677776664
Q ss_pred ----cch--hhhhccc----cCCCCC-CCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHH
Q 021643 211 ----LIG--MYHDWCE----SFNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKL 276 (309)
Q Consensus 211 ----lig--~~~d~ce----~~lpfP-~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i 276 (309)
... ...|-.. ..++.+ ..||+|-|.++||+.- .......+|.-+.+.|||||+||.+... .++.++
T Consensus 117 ~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l 196 (331)
T PF03291_consen 117 YRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRL 196 (331)
T ss_dssp SEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCH
T ss_pred ccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHH
Confidence 110 1111000 123333 5999999999998743 3334667999999999999999998543 344555
Q ss_pred HH
Q 021643 277 KP 278 (309)
Q Consensus 277 ~~ 278 (309)
++
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 54
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=82.90 Aligned_cols=113 Identities=21% Similarity=0.364 Sum_probs=79.2
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhhhhccccCCCCCCCcceeEec--ccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMYHDWCESFNTYPRTYDLLHSS--FLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~~d~ce~~lpfP~sFDlVh~~--~v~ 238 (309)
+|||+|||+|-.|.+|+..... .+|.++|.+ +++..|.+ .|+. .+..|| +.+.+++||+|+|| ++=
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl---f~~~~~~fDlIVsNPPYip 188 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVRVLVVQSDL---FEPLRGKFDLIVSNPPYIP 188 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec---ccccCCceeEEEeCCCCCC
Confidence 7999999999999999986421 367788887 56666644 3531 112233 45566799999987 111
Q ss_pred c-----------ccc------ccC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCC
Q 021643 239 S-----------DVT------QRC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQW 285 (309)
Q Consensus 239 ~-----------~~~------~~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W 285 (309)
. |.+ ..+ -..+++.+..++|+|||.+++.-.....+.++++.....+
T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~ 255 (280)
T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF 255 (280)
T ss_pred CcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC
Confidence 1 110 111 2567899999999999999998777777888888888884
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-06 Score=87.33 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=68.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccchhh--hhccccCCCC--C-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMY--HDWCESFNTY--P-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~--~d~ce~~lpf--P-~sFDlVh~~- 235 (309)
..+|||+|||+|+.+..+++.-- ...|+++|.+ +++..+.++ |+.... .+-.....++ + ++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 46899999999999988887421 1246777776 466555433 442101 1100111233 5 889999853
Q ss_pred -----ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 236 -----FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 236 -----~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
+++++.++- .+ -.++|.++.|+|||||++++++. .+.-..|+.+++
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 345433210 00 25699999999999999999853 233344455543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=82.06 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=77.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCC--CCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNT--YPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lp--fP~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..++.. +. ..++.+|.+ .+++.+.+. |..-...|+.+ .++ +.+.||+|+++-=+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~-~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYD-ALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechh-hcchhcCCCEeEEEECCCCC
Confidence 47999999999999988763 21 245667776 566665543 22111223211 122 236799999872111
Q ss_pred ------cccc--------------cC---CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 240 ------DVTQ--------------RC---DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ------~~~~--------------~~---~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
..++ .. -+.+++....++|+|||.+++.-..+....+..+++..+|+..+.
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceee
Confidence 0000 00 035788888899999999999877666778888888877876655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=89.11 Aligned_cols=116 Identities=15% Similarity=0.339 Sum_probs=76.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..++.. +- ..++++|.+ .+++.|.+. |+.. ...|+ ..+++ ++||+|+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 357999999999999888753 21 246677776 577776654 3311 11232 23455 789999995
Q ss_pred c--------------cccccc------ccCC---HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 236 F--------------LLSDVT------QRCD---IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~--------------v~~~~~------~~~~---~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
- +..|.+ ...+ ...++.++.++|+|||.+++.-....-+.+..++....|+.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~ 288 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNI 288 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCc
Confidence 1 111111 0111 34578899999999999998765556677888887777764
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-07 Score=83.68 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=71.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccccC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~ 245 (309)
...|-|+|||-|-+|.. ....|..+++++++.. -. .-|. +..|.+ +|.|++++ ||+.+. .
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~---------V~---~cDm--~~vPl~d~svDvaV~--CLSLMg--t 241 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAVNER---------VI---ACDM--RNVPLEDESVDVAVF--CLSLMG--T 241 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecCCCc---------ee---eccc--cCCcCccCcccEEEe--eHhhhc--c
Confidence 35799999999987751 1245677777766432 01 0111 258999 99999875 455443 4
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCHHHHH---HHHHHHHcCCCeeeee
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDTLEMIN---KLKPVLHSLQWSTNIY 290 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~~~~~~---~i~~l~~~l~W~~~~~ 290 (309)
++.+++.|.+|||||||.++|.+-..-.. ...+-+.+|.++....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 68899999999999999999987654333 3444457788877655
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=79.44 Aligned_cols=131 Identities=8% Similarity=0.052 Sum_probs=75.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-cc------hhh-hhccccCC-CCCCCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-LI------GMY-HDWCESFN-TYPRTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-li------g~~-~d~ce~~l-pfP~sFDlVh~~ 235 (309)
..++|||+|||+|.++.+++.... ...++.+|.. .+++.+.+.. +. .+. .|. ..++ ..+++||+|+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da-~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG-AEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH-HHHHHhCCCCCCEEEEe
Confidence 357899999999999998876421 1345666665 5777776652 11 111 221 1122 234789999986
Q ss_pred ccccc--ccccCCHHHHHHHHhhcccCCeEEEEE---eCHHHHHHHHHHHHcCC---Ceeeee--cceEEEEEe
Q 021643 236 FLLSD--VTQRCDIADVAVEMDRILRPGGYVLVQ---DTLEMINKLKPVLHSLQ---WSTNIY--HDQFLVGKK 299 (309)
Q Consensus 236 ~v~~~--~~~~~~~~~~L~Em~RVLRPGG~lii~---D~~~~~~~i~~l~~~l~---W~~~~~--~e~~li~~K 299 (309)
. +.. .+.......++.++.++|+|||.+++. ........++.+.+.+. +..... ...++++.|
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFK 216 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEEC
Confidence 3 321 111112368999999999999999984 22222333444444333 222221 235677766
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=85.51 Aligned_cols=113 Identities=20% Similarity=0.287 Sum_probs=67.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCC-CC-CCcceeEecc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNT-YP-RTYDLLHSSF- 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lp-fP-~sFDlVh~~~- 236 (309)
..+|||+|||+|+.+..+++...- ..|+.+|.+ .+++.+.++ |+ +. ..+|..+ ..+ ++ ++||.|+++-
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~-~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARD-PAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCccc-chhhcccCCCCEEEECCC
Confidence 468999999999999998875311 246677776 466655443 33 11 1223211 122 45 7899999432
Q ss_pred -----cccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 237 -----LLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 237 -----v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
++.+-+ ...+ ..++|.+..++|||||++++++. .+..+.++..++
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLA 389 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHH
Confidence 121110 0011 23689999999999999999864 333445555553
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.2e-06 Score=80.47 Aligned_cols=121 Identities=16% Similarity=0.276 Sum_probs=71.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEe-cccCCcccHHHHHh-----cCcch-hhhhccccCCCCCCCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNV-VPIDAPDTLSIIFD-----RGLIG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V-~p~d~s~~l~~a~e-----Rglig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
...++||.|||.|..+..|+-.-...+++ .|+ +.-++.|.+ .+-++ .+..--+.+-|-++.||+|++..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 46789999999999998886654333343 232 134555552 22111 1111011234555899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHH----------------HHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~~ 289 (309)
.|+.+ .++.++|.-....|+|+|.+++-|+.. .-+.+++|.+.=..++..
T Consensus 133 ghLTD-~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 133 GHLTD-EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GGS-H-HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred ccCCH-HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99986 578999999999999999999975421 245566666655555443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=83.08 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC------c-----ch-hhhhccccCCCCC-CCc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L-----IG-MYHDWCESFNTYP-RTY 229 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg------l-----ig-~~~d~ce~~lpfP-~sF 229 (309)
...++|||+|||.|+++..++++ ++ ..|+.++.. .+++.+.+.- . +. ...| +...+..+ ++|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D-a~~~l~~~~~~y 151 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD-GIKFVAETENSF 151 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc-hHHHHhhCCCcc
Confidence 34679999999999999999886 33 245556665 4666665431 1 00 1122 11234445 899
Q ss_pred ceeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 267 (309)
|+|++...-. ...... -+.++.++.|.|+|||.+++.
T Consensus 152 DvIi~D~~dp-~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDSTDP-VGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECCCCC-CCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999864322 211111 256889999999999999985
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-06 Score=84.87 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=67.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCCCCcceeEecc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYPRTYDLLHSSF-- 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP~sFDlVh~~~-- 236 (309)
..+|||+|||+|+++..+++.-.....|+.+|.+ ++++.+.+ .|+. . ...|..+...+++++||+|+++-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 4689999999999998888641001246677776 45555543 2431 1 12232111113458999998752
Q ss_pred ----ccccccc------cCC-------HHHHHHHHhhcccCCeEEEEEeCH----HHHHHHHHHHHc
Q 021643 237 ----LLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDTL----EMINKLKPVLHS 282 (309)
Q Consensus 237 ----v~~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~~----~~~~~i~~l~~~ 282 (309)
.+.+-++ ..+ -..+|.++.|+|||||.++.+... +.-..++.+++.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHh
Confidence 2222110 011 135799999999999999987532 334455555544
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=78.27 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=65.9
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcc--hhhhhccccC--CCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLI--GMYHDWCESF--NTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRgli--g~~~d~ce~~--lpfP-~sFDlVh~~~v~ 238 (309)
.+||+|||.|.|...++...-. .++.+++.. .....+.++|+. ..+..-+... .-++ +++|.|+..+-=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 7999999999999999873211 234444443 245556666661 1111101111 1244 999999876322
Q ss_pred c-----cccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHc
Q 021643 239 S-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS 282 (309)
Q Consensus 239 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~ 282 (309)
- |.+.+---..+|.++.|+|+|||.+.+. |..++.+.+.+.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1 2222222357999999999999999886 555566666655544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-06 Score=80.48 Aligned_cols=91 Identities=20% Similarity=0.366 Sum_probs=68.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-hhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
+..++||+|+|-|+-...|+..- -.|.....| .|...-.+||.. -...+|-+. +..||+|.|-+++ |
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 45789999999999999997731 235555666 577777789972 223344221 3679999999988 4
Q ss_pred cCC-HHHHHHHHhhcccCCeEEEEE
Q 021643 244 RCD-IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 244 ~~~-~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+ +..+|.+|++.|+|+|.+++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 553 778999999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.8e-06 Score=62.64 Aligned_cols=94 Identities=26% Similarity=0.390 Sum_probs=57.7
Q ss_pred EEEeCCcchHH--HHHhhcCCCEEEEecccCCc-ccHHHHHhcC-------cchhhhhccccCCCCCC--CcceeEeccc
Q 021643 170 VMDMNASYGGF--AAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LIGMYHDWCESFNTYPR--TYDLLHSSFL 237 (309)
Q Consensus 170 VLD~GCG~G~f--aa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-------lig~~~d~ce~~lpfP~--sFDlVh~~~v 237 (309)
++|+|||+|.. ...+...+..+ .++|.+ .++..+..+. ......+......+++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYV---VGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 99999999984 44444433223 335555 3444433332 11122221111266663 89999 6655
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
..++.. ....+.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 554433 678999999999999999998654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.8e-06 Score=76.25 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcc---hhh-hhccccCCC-----CC-CCc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLI---GMY-HDWCESFNT-----YP-RTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~-~d~ce~~lp-----fP-~sF 229 (309)
+.++|||+|||+|.-+.+|+.. +.. ..++.+|.. ++++.|.+ .|+. ... +|..+ .++ .+ .+|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~-~L~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS-ALDQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH-HHHHHHhCCCCCCC
Confidence 3578999999999866666542 110 134444544 34444433 3431 111 11111 111 23 789
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------------HHHHHHHHH----HHcCCCeee
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------EMINKLKPV----LHSLQWSTN 288 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------~~~~~i~~l----~~~l~W~~~ 288 (309)
|+|++..- ......++.++.|.|||||.+++.+.. .....++++ ...=+++..
T Consensus 146 D~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~ 219 (234)
T PLN02781 146 DFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEIS 219 (234)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEE
Confidence 99987532 234567899999999999998874310 122344443 344455554
Q ss_pred ee--cceEEEEEeC
Q 021643 289 IY--HDQFLVGKKG 300 (309)
Q Consensus 289 ~~--~e~~li~~K~ 300 (309)
+. .+.+++++|.
T Consensus 220 ~lp~gdG~~i~~k~ 233 (234)
T PLN02781 220 QISIGDGVTLCRRL 233 (234)
T ss_pred EEEeCCccEEEEEe
Confidence 44 7888888885
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5e-06 Score=83.08 Aligned_cols=114 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC----CC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT----YP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp----fP-~sFDlVh 233 (309)
..+|||+|||+|+.+.+|++.--....|+++|.+ .+++.+.++ |+. . ...|. . .++ ++ ++||.|+
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~-~-~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS-R-NLLELKPQWRGYFDRIL 330 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh-h-hcccccccccccCCEEE
Confidence 3589999999999998887641001246677776 466555433 431 1 11221 1 122 44 8999999
Q ss_pred ec------ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc
Q 021643 234 SS------FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 282 (309)
Q Consensus 234 ~~------~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 282 (309)
+. .++.+-++. .+ ..++|.++.|+|||||+++.++. .+..+.++..+++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 63 344332210 01 25789999999999999998763 2445666666654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-06 Score=79.90 Aligned_cols=103 Identities=14% Similarity=0.189 Sum_probs=65.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc--------C-c----ch-hhhhccccCCCCC-CC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR--------G-L----IG-MYHDWCESFNTYP-RT 228 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR--------g-l----ig-~~~d~ce~~lpfP-~s 228 (309)
...++||++|||+|+.++.+.+.+ .+..|+.+|.. .++++|.+. + + +. ...|- ..++.-. +.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da-~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA-KEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH-HHHHHhcCCC
Confidence 446799999999999998888764 12356666766 578888751 1 1 00 11221 1234444 78
Q ss_pred cceeEeccccccc--cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 229 YDLLHSSFLLSDV--TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 229 FDlVh~~~v~~~~--~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
||+|++...-..- ...---..++..+.|.|+|||.+++...
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999987321100 0011125689999999999999988744
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=5e-06 Score=83.34 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEec--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
..+|||+|||+|+.+..+++.---...|+++|.+ .+++.+.++ |+. . ..+|. . .. .+ ++||.|++.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da-~-~~-~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA-R-SF-SPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc-c-cc-ccCCCCCEEEEcCC
Confidence 4689999999999887777521001246677777 466555433 441 1 12221 1 12 25 889999953
Q ss_pred ----ccccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc
Q 021643 236 ----FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 282 (309)
Q Consensus 236 ----~v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 282 (309)
..+...+ ...+ -..+|.++.|.|||||++++++. .+....++.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222111 0011 13589999999999999999873 2335556666654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-06 Score=74.68 Aligned_cols=128 Identities=17% Similarity=0.271 Sum_probs=85.6
Q ss_pred eEEEeCCcchHHHHHhhcC-CCEEEEecccCCcc-cH----HHHHhcCcc----hhhhhccccCC------CCC-CCcce
Q 021643 169 NVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD-TL----SIIFDRGLI----GMYHDWCESFN------TYP-RTYDL 231 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~-~l----~~a~eRgli----g~~~d~ce~~l------pfP-~sFDl 231 (309)
+||.+|||||--+++++.. +- +.-.|.|... .+ ..+.+.|+. ....|.+.... ++. ++||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 6999999999998888874 31 2356777652 22 223344541 11222222111 223 79999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEE-----------eC----------------HHHHHHHHHHHHcCC
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-----------DT----------------LEMINKLKPVLHSLQ 284 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-----------D~----------------~~~~~~i~~l~~~l~ 284 (309)
|+|..++|-. .+...+.++.+..|+|+|||.|++= +. ..-++.+..+|.+-.
T Consensus 106 i~~~N~lHI~-p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHIS-PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhc-CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999988644 3445688999999999999999992 11 123778999998877
Q ss_pred Ceeeee-----cceEEEEEe
Q 021643 285 WSTNIY-----HDQFLVGKK 299 (309)
Q Consensus 285 W~~~~~-----~e~~li~~K 299 (309)
.+.... ...+||++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 765433 789999997
|
The function of this family is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-06 Score=85.81 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC-CC-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT-YP-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp-fP-~sFDlVh~~- 235 (309)
..+|||+|||+|+.+.+++..---...|+++|.+ ++++.+.++ |+. . ...|.. .++ +. ++||.|++.
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~--~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE--RLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh--hhhhhhhccCCEEEECC
Confidence 4689999999999988887631001246777877 566665443 441 1 122321 233 44 889999863
Q ss_pred -----cccccccc------cC-------CHHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 236 -----FLLSDVTQ------RC-------DIADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 236 -----~v~~~~~~------~~-------~~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
+.+.+-++ .. .-.++|.+..+.|||||+++.+.. .+..+.|+.++.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 22221110 00 114679999999999999999864 233444555543
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-06 Score=75.41 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=71.1
Q ss_pred hhcccchhHHHHHHHHHHh-ccC-CCCCCCCeEEEeCCcchH----HHHHhhc--C--CCEEEEecccCCc-ccHHHHHh
Q 021643 140 AFNKDTTHWYALVSDVYVG-GLA-INWSSVRNVMDMNASYGG----FAAALID--Q--PLWVMNVVPIDAP-DTLSIIFD 208 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~-~l~-i~~~~~r~VLD~GCG~G~----faa~L~~--~--~v~v~~V~p~d~s-~~l~~a~e 208 (309)
.|--+...|...... .+. .+. ...++.-+|..+||++|. .|..|.+ . ..+-..|.+.|.+ .+++.|.+
T Consensus 4 ~FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 4 YFFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred cccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 455666777665543 331 221 122345789999999994 5655555 1 2234678888988 57776642
Q ss_pred cCc----------ch--------------------------hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHH
Q 021643 209 RGL----------IG--------------------------MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAV 252 (309)
Q Consensus 209 Rgl----------ig--------------------------~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~ 252 (309)
|. .. ..|+..+ ..|.++.||+|+|.+||.++.. ....+++.
T Consensus 83 -G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~vl~ 159 (196)
T PF01739_consen 83 -GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQRVLR 159 (196)
T ss_dssp -TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHHHHH
T ss_pred -CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHHHHH
Confidence 21 00 1123222 1222399999999999999864 34578999
Q ss_pred HHhhcccCCeEEEEEeCH
Q 021643 253 EMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 253 Em~RVLRPGG~lii~D~~ 270 (309)
-+++.|+|||++++-...
T Consensus 160 ~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 160 RLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHGGGEEEEEEEEE-TT-
T ss_pred HHHHHcCCCCEEEEecCc
Confidence 999999999999997543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-06 Score=87.80 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=75.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h----hhhhccccCCC-CCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G----MYHDWCESFNT-YPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g----~~~d~ce~~lp-fP~sFDlVh~~~ 236 (309)
++|||+|||+|+|+.+++..+.. .|+.+|.+ .+++.+.+. |+. . ...|.. ..+. +.++||+|+++=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~-~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL-AWLKEAREQFDLIFIDP 616 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH-HHHHHcCCCcCEEEECC
Confidence 68999999999999999987642 46777887 567666543 331 0 111211 1121 247899999861
Q ss_pred -cccc-------ccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 237 -LLSD-------VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 237 -v~~~-------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
.|.. +....+..+++....|+|+|||.+++.....-+....+.+..-.++...
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 1110 0001135678889999999999999876655444445556555666544
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.9e-06 Score=76.86 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhh-hhccccCCCCC-CCcceeEec--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMY-HDWCESFNTYP-RTYDLLHSS-- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~-~d~ce~~lpfP-~sFDlVh~~-- 235 (309)
..+|||+|||+|+.+..|++.--....|..+|.+ .+++.+.++ |+ +... .|. . ..+.+ +.||.|++.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~-~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-R-VFGAAVPKFDAILLDAP 149 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-H-HhhhhccCCCEEEEcCC
Confidence 3589999999999998887631000146677776 455554432 43 1112 221 1 23444 779999863
Q ss_pred ----ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 ----FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ----~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++.+-++. .+ -.++|.++.+.|||||+++.+..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 222221110 01 13589999999999999999854
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-06 Score=81.21 Aligned_cols=96 Identities=21% Similarity=0.326 Sum_probs=73.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc---CcchhhhhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR---GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR---glig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
.-.++|+|||.|..+..|...+| -.+.-.|.| .|++-+.+- ++...+-.--|++++|. ++||+|+++..+| |
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence 45799999999999999999874 345566777 677776554 44333322236799999 9999999997765 4
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+ ++...+..++-+|||.|.|+-+
T Consensus 150 ~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 150 TN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hc--cCchHHHHHHHhcCCCccchhH
Confidence 43 4677899999999999999875
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.7e-06 Score=79.62 Aligned_cols=118 Identities=14% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-cHHHHHhcC---------cc--hh-hhhccc-----cCCCCC-
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-TLSIIFDRG---------LI--GM-YHDWCE-----SFNTYP- 226 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-~l~~a~eRg---------li--g~-~~d~ce-----~~lpfP- 226 (309)
+...++|+|||-||=+...-+.++ -.++++|..+ .++.|..|- .+ .. +..-|. ..++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 356799999999984333222221 1233444432 344443331 10 00 000011 257777
Q ss_pred CCcceeEecccccc-ccccCCHHHHHHHHhhcccCCeEEEEEe--CHHHHHHHHHHHHcCCCe
Q 021643 227 RTYDLLHSSFLLSD-VTQRCDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 227 ~sFDlVh~~~v~~~-~~~~~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~l~W~ 286 (309)
..||+|-|.++||+ +........+|.-+.+-|||||+||-+- ...++.+++.. ...+|-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~-e~~~~g 256 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG-EVERFG 256 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc-cchhhc
Confidence 56999999999986 3333345668999999999999999884 44577777766 333443
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.8e-05 Score=69.25 Aligned_cols=138 Identities=17% Similarity=0.193 Sum_probs=66.6
Q ss_pred ccC-CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccc--------cCCCCC-CC
Q 021643 159 GLA-INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCE--------SFNTYP-RT 228 (309)
Q Consensus 159 ~l~-i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce--------~~lpfP-~s 228 (309)
... ++.+...+|||+||++|||+..+.++......|.++|...+-+. ++......|..+ ..++=. +.
T Consensus 15 ~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 15 KFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred HCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence 344 44556689999999999999999987611122333333211000 111000011000 112212 68
Q ss_pred cceeEecccccccc--cc------CCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeeeee-----
Q 021643 229 YDLLHSSFLLSDVT--QR------CDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY----- 290 (309)
Q Consensus 229 FDlVh~~~v~~~~~--~~------~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~----- 290 (309)
||+|+|.....--. +. .-....|.=+.+.|||||.+++.- ..+.+..++..-+..++-.-..
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s 171 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSES 171 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTC
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCc
Confidence 99999987332110 00 012233444457799999888842 2356666666555544322111
Q ss_pred cceEEEEEe
Q 021643 291 HDQFLVGKK 299 (309)
Q Consensus 291 ~e~~li~~K 299 (309)
.|..+||++
T Consensus 172 ~E~Ylv~~~ 180 (181)
T PF01728_consen 172 SEEYLVCRG 180 (181)
T ss_dssp BEEEEESEE
T ss_pred cEEEEEEcC
Confidence 566666653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00011 Score=66.26 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=79.8
Q ss_pred hhhccc--chhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc----ccHHHHHhc-Cc
Q 021643 139 EAFNKD--TTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTLSIIFDR-GL 211 (309)
Q Consensus 139 e~F~~d--~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s----~~l~~a~eR-gl 211 (309)
+.|..+ ...-|+-+..--+..|.+.+ ...++|+|||||+.+..++..+- ...+.+++.. +..+...+| |+
T Consensus 7 ~~F~~~~~~p~TK~EIRal~ls~L~~~~--g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~ 83 (187)
T COG2242 7 ELFERDEGGPMTKEEIRALTLSKLRPRP--GDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV 83 (187)
T ss_pred hhhccCCCCCCcHHHHHHHHHHhhCCCC--CCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC
Confidence 344444 33333433321234555544 45899999999999888773211 1234444543 233333333 32
Q ss_pred --chhhhhccccCC-CCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCC
Q 021643 212 --IGMYHDWCESFN-TYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQW 285 (309)
Q Consensus 212 --ig~~~d~ce~~l-pfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W 285 (309)
+.+...++-..+ .. .+||.|+.... . +++.+|.-....|||||.+++.- ..+....+-+..+.+.+
T Consensus 84 ~n~~vv~g~Ap~~L~~~-~~~daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 84 DNLEVVEGDAPEALPDL-PSPDAIFIGGG-G------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CcEEEEeccchHhhcCC-CCCCEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 112222111122 23 38999987755 2 36779999999999999999974 56667777777777777
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=75.27 Aligned_cols=110 Identities=17% Similarity=0.300 Sum_probs=70.6
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEeccccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
+|||+|||+|-.++.|++..- -..++-+|.+ .+++.+++. ++.+ ++++ .-..+-.+.||+|+|+==||.-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998643 2356666776 456655432 3322 2222 1123333799999998666532
Q ss_pred cccC--CHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHH
Q 021643 242 TQRC--DIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLH 281 (309)
Q Consensus 242 ~~~~--~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~ 281 (309)
.+-. --++++.+..+-|++||.+.|--+ ..+-.+++++-.
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg 281 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG 281 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence 2110 124789999999999998777544 445566666544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=78.46 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=59.1
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCC-CC
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYP-RT 228 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP-~s 228 (309)
+.+.+.. ..+|||+|||+|.+++.+++.....-.|+.+|.+ ++++.+.+ .|+. . ...|.. ..+.+ ..
T Consensus 74 ~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~--~~~~~~~~ 149 (322)
T PRK13943 74 EWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGY--YGVPEFAP 149 (322)
T ss_pred HhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChh--hcccccCC
Confidence 3444443 3589999999999999988632100124555665 46665554 2431 1 122211 12333 78
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||+|++...+.+ +...+.|.|||||.+++..
T Consensus 150 fD~Ii~~~g~~~---------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDE---------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHH---------hHHHHHHhcCCCCEEEEEe
Confidence 999998754432 3345678999999988853
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.5e-06 Score=76.40 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=62.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----chh-hhhccccCCCC-CCCcce
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGM-YHDWCESFNTY-PRTYDL 231 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig~-~~d~ce~~lpf-P~sFDl 231 (309)
.+.++|||+|||+|+++..+.+... +..++.+|.. ++++.+.+.- + +.. ..|. ...+.. +++||+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-~~~l~~~~~~yDv 148 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-FKFLADTENTFDV 148 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-HHHHHhCCCCccE
Confidence 3456999999999999988877641 2345555555 4556555431 0 000 1111 112222 489999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D 268 (309)
|++..... ...... ...++..+.|+|+|||.+++..
T Consensus 149 Ii~D~~~~-~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDP-VGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCC-CCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 99875422 111112 3578899999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-06 Score=77.15 Aligned_cols=96 Identities=13% Similarity=0.156 Sum_probs=64.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-c-hhhhhccccCCCC-C-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-I-GMYHDWCESFNTY-P-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-i-g~~~d~ce~~lpf-P-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..++.+.. ...|+.+|.+ .+++.+.++-. + -...| ...+ . ++||+|+++--|.|.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D----~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD----VFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc----hhhhcccCCCcEEEEcCCcccc
Confidence 35899999999999888866421 1356777777 68888876521 1 11122 2222 3 789999998777664
Q ss_pred ccc--CC---------------HHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQR--CD---------------IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~--~~---------------~~~~L~Em~RVLRPGG~lii~ 267 (309)
... .+ +.+.+....++|+|+|.+++.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 311 01 357889999999999987665
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-05 Score=80.55 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c------------ch-hhhhccccCCC-CCCCc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L------------IG-MYHDWCESFNT-YPRTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l------------ig-~~~d~ce~~lp-fP~sF 229 (309)
+.++|||+|||+|..+..+.+++. +..++.+|.. ++++.+++.. + +. ...| ....+. .+++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D-a~~~l~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD-AFNWLRKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh-HHHHHHhCCCCC
Confidence 457899999999999999887642 2345666665 5777777621 1 00 1112 111233 24899
Q ss_pred ceeEeccccccccc--cCCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCee
Q 021643 230 DLLHSSFLLSDVTQ--RCDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 230 DlVh~~~v~~~~~~--~~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~ 287 (309)
|+|+++......+. .---++++.++.|.|||||.+++.. ..+...++.+.+++....+
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 99999743221110 0012458899999999999999853 2444555556566654543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-05 Score=72.76 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=67.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc-Ccc--------------hhhhhccccCCCCC-----
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-GLI--------------GMYHDWCESFNTYP----- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR-gli--------------g~~~d~ce~~lpfP----- 226 (309)
.+||+.|||.|.=+.+|+++|. +|+++|.| ..++.++++ ++. +.+.-+|..+..++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5899999999999999999985 46677777 355554442 110 01111122233332
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+.||+|.=..+|.+++. ....++..-|.++|||||.+++.
T Consensus 122 ~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999999999999864 44678999999999999987664
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=71.84 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=72.9
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHH----HHHhcCcch----hhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS----IIFDRGLIG----MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~----~a~eRglig----~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+|||.|++...|++.+... .++++|.+ .++. +|..+|+.. ...|... ..|- +.||+|+=-..+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~--~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD--PDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC--CcccccceeEEeecCce
Confidence 89999999999999999987532 37888888 3443 344455521 1223211 1343 888888754433
Q ss_pred cc-----ccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCC
Q 021643 239 SD-----VTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 239 ~~-----~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 284 (309)
-. -.....+.-++--+.++|+|||+|+|+...-..+++.+....-.
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 21 11112234578889999999999999987766666655554443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=71.68 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc----h--h--hhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI----G--M--YHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli----g--~--~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||||+|+..|+++++ -.|.++|.+ +|+.....+..- + . +.+|.+ .+.. ..||+++++.
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~--~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPAD--IFPDFATFDVSFISL 151 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhH--cCCCceeeeEEEeeh
Confidence 46899999999999999999864 346777887 466553333210 0 1 112211 2223 4667666553
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEE-------------------e---CHHHHHHHHHHHHcCCCeee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ-------------------D---TLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------D---~~~~~~~i~~l~~~l~W~~~ 288 (309)
.. +|..+.+.|+| |.+++- | ....++++...+....|+..
T Consensus 152 ~~-----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 152 IS-----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred Hh-----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 22 57788888888 776653 2 12356777777777777653
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=77.10 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=79.0
Q ss_pred chhhhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchH----HHHHhhcC-CC--EEEEecccCCc-ccHHHHHh
Q 021643 137 SEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ-PL--WVMNVVPIDAP-DTLSIIFD 208 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~----faa~L~~~-~v--~v~~V~p~d~s-~~l~~a~e 208 (309)
....|=-|...|..... .+.. ..+.-+|...||.||. .|..|.+. +. .-..|.+.|.+ ++++.|.+
T Consensus 92 neT~FFRd~~~f~~L~~--~~~~----~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~ 165 (287)
T PRK10611 92 NLTAFFREAHHFPILAE--HARR----RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS 165 (287)
T ss_pred CCCCccCCcHHHHHHHH--HHHh----cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh
Confidence 33456667777765543 2211 1123589999999994 55555552 11 12468888887 56666543
Q ss_pred c--------Cc-------------------------c-----hhhhhccccCCCCC--CCcceeEeccccccccccCCHH
Q 021643 209 R--------GL-------------------------I-----GMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIA 248 (309)
Q Consensus 209 R--------gl-------------------------i-----g~~~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~ 248 (309)
- ++ + -..|+.. ..+|| +.||+|+|.++|.|+.. ....
T Consensus 166 G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~--~~~~~~~~~fD~I~cRNvliyF~~-~~~~ 242 (287)
T PRK10611 166 GIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLL--AKQWAVPGPFDAIFCRNVMIYFDK-TTQE 242 (287)
T ss_pred CCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCC--CCCCccCCCcceeeHhhHHhcCCH-HHHH
Confidence 1 10 0 0112221 12454 89999999999999853 4567
Q ss_pred HHHHHHhhcccCCeEEEEEeC
Q 021643 249 DVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 249 ~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++..+.+.|+|||++++-..
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeCc
Confidence 899999999999999887653
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.6e-05 Score=76.53 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------Cc----ch-hhhhccccCC-CCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL----IG-MYHDWCESFN-TYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------gl----ig-~~~d~ce~~l-pfP-~sFD 230 (309)
.+.++|||+|||.|+++..+++.+ .+..|+-++.. .+++.+++. ++ +. ...| +...+ ..+ +.||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D-a~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD-GVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh-HHHHHhhccCCCCC
Confidence 346799999999999999998864 12334444444 355555443 11 00 1112 10111 234 7899
Q ss_pred eeEecccccccccc-CCHHHHHHHHhhcccCCeEEEEE
Q 021643 231 LLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 231 lVh~~~v~~~~~~~-~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|++...-.+-+.. ---..++..+.|.|+|||.+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 99986432211100 01246899999999999999873
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.9e-06 Score=74.57 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=54.7
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC--C-CEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCC
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ--P-LWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT 224 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~--~-v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lp 224 (309)
.++.+.+.++ .+|||+|||+|.+++.|+.. . ..|.+ ++.. ...+.|.++ |+ .-..+| ....
T Consensus 64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~---vE~~~~l~~~A~~~l~~~~~~nv~~~~gd---g~~g 135 (209)
T PF01135_consen 64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVS---VERDPELAERARRNLARLGIDNVEVVVGD---GSEG 135 (209)
T ss_dssp HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEE---EESBHHHHHHHHHHHHHHTTHSEEEEES----GGGT
T ss_pred HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEE---ECccHHHHHHHHHHHHHhccCceeEEEcc---hhhc
Confidence 3444555554 58999999999999988863 2 22333 3333 233444333 33 112223 2345
Q ss_pred CC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 225 YP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 225 fP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+| ..||.||+.......+ .++.+-|||||++++--
T Consensus 136 ~~~~apfD~I~v~~a~~~ip---------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP---------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TGGG-SEEEEEESSBBSS-----------HHHHHTEEEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccchHH---------HHHHHhcCCCcEEEEEE
Confidence 55 7899999987775332 33556699999999843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.1e-05 Score=77.54 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=62.7
Q ss_pred eEEEeCCcchHHHHHhhcC---CCEEEEecccCCcccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 169 NVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAPDTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
.++|+|||+|+...++... ++...+..+......-......++ .-+.++. ...||+ ++||.+-+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~--~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF--GKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh--hcCCCCccccCcEEEEeeccc
Confidence 7899999999998888763 222222222211110111111111 1133332 258999 99999999999988
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.++ ...++.|++||++|||+++.-+
T Consensus 191 ~~~---~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 191 APD---LEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CCc---HHHHHHHHhcccCCCceEEeHH
Confidence 874 7889999999999999999853
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.1e-06 Score=78.47 Aligned_cols=93 Identities=23% Similarity=0.185 Sum_probs=66.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
...++|+|||.|- ++...+. ..+.+.|.+ ..+..+...|- .-...|. ..+||+ .+||.+.+..++||+..
T Consensus 46 gsv~~d~gCGngk---y~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~~ad~--l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGK---YLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVCRADA--LKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cceeeecccCCcc---cCcCCCc--ceeeecchhhhhccccccCCCceeehhhh--hcCCCCCCccccchhhhhhhhhhh
Confidence 3579999999986 3333331 134556666 34555555554 2222231 268999 99999999999999988
Q ss_pred cCCHHHHHHHHhhcccCCeEEEE
Q 021643 244 RCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++.-+.++.|+-|+|||||...|
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEE
Confidence 88788999999999999998555
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.87 E-value=2e-05 Score=68.39 Aligned_cols=94 Identities=12% Similarity=0.086 Sum_probs=57.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++++. .++++|.+ .+++.+.++. +.-...|.. ..+++ ..||.|+++--++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~--~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDAL--KFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchh--cCCccccCCCEEEECCCcc
Confidence 35899999999999999998743 45666666 4666665542 111222321 35667 6799998874443
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.. ...+..++.+. -+.++|.+++...
T Consensus 89 -~~-~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 89 -IS-TPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred -cH-HHHHHHHHhcC--CCcceEEEEEEHH
Confidence 21 12233444332 2568888888643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.9e-05 Score=76.14 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccc--cCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCE--SFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce--~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++... .|.++|.+ .+++.|.+. |+. -...|+.+ ...+++ ++||+|+++
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 35899999999999999998753 56677777 577766643 331 11122211 124566 789999765
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~ 287 (309)
+.+.++...+..+.+ ++|++.++++=.+. .-..++.+.+ -.|++
T Consensus 375 ------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l 419 (443)
T PRK13168 375 ------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRL 419 (443)
T ss_pred ------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEE
Confidence 223344556666655 69999999995554 3334555532 23554
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.8e-05 Score=72.01 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=69.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCC--EEEEecccCCc--ccHHHHHhcCc-c-hhhhhccccCCC--CC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPL--WVMNVVPIDAP--DTLSIIFDRGL-I-GMYHDWCESFNT--YP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v--~v~~V~p~d~s--~~l~~a~eRgl-i-g~~~d~ce~~lp--fP-~sFDlVh~~~v~ 238 (309)
..+|+||||.|.|...++.++- ..++|...... ..+..+.+.|+ . .++..-+...+. +| +|.|-|+.++-=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 3799999999999999998532 22233332222 46777888887 2 222211222232 34 599999876222
Q ss_pred c-----cccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHH-HHHHH
Q 021643 239 S-----DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINK-LKPVL 280 (309)
Q Consensus 239 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~-i~~l~ 280 (309)
- |.+.+---..+|.++.|+|+|||.+.+..+ .++.+. +...+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 1 222221235689999999999999998754 444444 44444
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=71.21 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=58.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-C-CEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCCCCcceeEeccccccc-
Q 021643 168 RNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSFLLSDV- 241 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~-v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP~sFDlVh~~~v~~~~- 241 (309)
.+|||+|||+|.++.+++.+ . .....|..+|.. .+++.|.+... +. ...|.. ..+++.+||+|+++==|...
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~--~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADAL--TTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchh--cccccCCccEEEECCCCCCcc
Confidence 58999999999999988753 1 011357777776 57777775432 11 112211 12234799999998222111
Q ss_pred -cc------cCC-HHHHHHHHhhcccCCeEEEE
Q 021643 242 -TQ------RCD-IADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 242 -~~------~~~-~~~~L~Em~RVLRPGG~lii 266 (309)
.+ ... ...++....|.++||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 11 111 44588888998888886 44
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.3e-05 Score=76.06 Aligned_cols=114 Identities=9% Similarity=0.104 Sum_probs=69.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-----ccHHHHHhcCcch--hh-hhccccCCCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-----DTLSIIFDRGLIG--MY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-----~~l~~a~eRglig--~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
....+||+|||.|.|...++...-. .++.+++.. ..+..+.++|+.. .+ .+...-..-|| +++|-|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3578999999999999999975311 133333333 3555666666521 11 11100112378 9999998763
Q ss_pred ccc-----cccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHH
Q 021643 237 LLS-----DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVL 280 (309)
Q Consensus 237 v~~-----~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~ 280 (309)
-=- |.+.+---..+|.++.|+|||||.+.+. |..++.+.+....
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~ 475 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELI 475 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 222 2222222357999999999999988876 5555555544443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=72.06 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=68.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h---h-hhhccccCC-CC--C-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G---M-YHDWCESFN-TY--P-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g---~-~~d~ce~~l-pf--P-~sFDlV 232 (309)
..+|||+|||+|+|+.+.+..+. ..|+.+|.+ .+++.+.+. |+. . . ..|..+ .+ .+ . ++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~-~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK-LLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHH-HHHHHHhcCCCCCEE
Confidence 36899999999999877555442 245667776 466555432 331 0 1 112111 11 12 2 589999
Q ss_pred Eeccc-ccccc-----ccCCHHHHHHHHhhcccCCeEEEEEeC------HHHHHHHHHHHHcCCCeeee
Q 021643 233 HSSFL-LSDVT-----QRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 233 h~~~v-~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~~ 289 (309)
+++== |..-. ...+..+++.-..++|+|||.++.... .+..+.+.+-+..-.-+.++
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 98711 11000 001345566678899999999998543 33556666666555554443
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=65.05 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=74.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c-cHHHHHhcCcch---hh-hhccccCCC-----C-CCCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D-TLSIIFDRGLIG---MY-HDWCESFNT-----Y-PRTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~-~l~~a~eRglig---~~-~d~ce~~lp-----f-P~sFD 230 (309)
+.++||++|+++|..+.+|+.. +..+..+...... + +.+....-|+.. .. .+..+ .++ . +++||
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~-~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE-VLPELANDGEEGQFD 123 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH-HHHHHHHTTTTTSEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh-hHHHHHhccCCCcee
Confidence 4579999999999999888852 3444444432221 1 223334445411 11 11111 111 2 36899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH----------------HHHHHHHHHHHcCCCeeeee--cc
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTNIY--HD 292 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~~~--~e 292 (309)
+|+...- ..+...++..+.+.|||||.+++.+.. .+.+-.+.+.+.=+.++.+. .+
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigd 197 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGD 197 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTT
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCC
Confidence 9987642 234567888899999999999997521 12223334445556666555 78
Q ss_pred eEEEEEeC
Q 021643 293 QFLVGKKG 300 (309)
Q Consensus 293 ~~li~~K~ 300 (309)
.+++++|+
T Consensus 198 Gl~l~~K~ 205 (205)
T PF01596_consen 198 GLTLARKR 205 (205)
T ss_dssp EEEEEEE-
T ss_pred eeEEEEEC
Confidence 89999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.6e-05 Score=68.48 Aligned_cols=126 Identities=19% Similarity=0.305 Sum_probs=81.3
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh-cCcc------hhh--------hhcc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD-RGLI------GMY--------HDWC 219 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e-Rgli------g~~--------~d~c 219 (309)
|++.++.. ...+||+-|||.|.-+.+|+++|. +|+++|.+ ..++.+++ +++. +.+ .-+|
T Consensus 29 ~~~~l~~~--~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 29 YLDSLALK--PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHTTS--TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHhcCCC--CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 55554332 235899999999999999999984 67888888 46766643 4431 100 0122
Q ss_pred ccCCCCC----CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEE--EEEeCH----------HHHHHHHHHHHcC
Q 021643 220 ESFNTYP----RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYV--LVQDTL----------EMINKLKPVLHSL 283 (309)
Q Consensus 220 e~~lpfP----~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~l--ii~D~~----------~~~~~i~~l~~~l 283 (309)
..+..++ +.||+|+=..+|.-++ ...-.++..-|.++|||||.+ +..+.. -..++|+++.. -
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~ 181 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-P 181 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-T
T ss_pred cccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-C
Confidence 2344433 5699999888887775 356789999999999999993 332210 13566777776 5
Q ss_pred CCeee
Q 021643 284 QWSTN 288 (309)
Q Consensus 284 ~W~~~ 288 (309)
.|++.
T Consensus 182 ~f~i~ 186 (218)
T PF05724_consen 182 GFEIE 186 (218)
T ss_dssp TEEEE
T ss_pred CcEEE
Confidence 66654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00052 Score=65.40 Aligned_cols=126 Identities=14% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHH----HHhcCcc-------hhhhhccccC--CCCCCC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSI----IFDRGLI-------GMYHDWCESF--NTYPRT 228 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~----a~eRgli-------g~~~d~ce~~--lpfP~s 228 (309)
+.++||++|+|+|..+.+++.. +.. |+.++.. +..++ ..+-|+. |...+.-... ....++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3579999999999999888762 222 3333333 23333 3334541 2221110000 011368
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHH----HHHcCCCeeeee--
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY-- 290 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~-- 290 (309)
||+|+... +..+...++....+.|||||.+++.+-. .-...+++ +.+.=+++..+.
T Consensus 195 FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 195 YDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred CCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 99997652 2335677899999999999999886320 11123333 445556776655
Q ss_pred cceEEEEEeC
Q 021643 291 HDQFLVGKKG 300 (309)
Q Consensus 291 ~e~~li~~K~ 300 (309)
.+.+++++|.
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 6888888874
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00025 Score=70.64 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--ch-hhhhccc--cCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IG-MYHDWCE--SFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig-~~~d~ce--~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++... .|+++|.+ ++++.|.+ .|+ +. ...|..+ ...++. ++||+|+.+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 35899999999999999987643 35566665 46655554 233 11 1122211 012344 689999864
Q ss_pred cccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 236 FLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
- .+.+ ...++.++.+ |+|+|.++++-+...+.+--+++..-.|+.
T Consensus 370 P------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 370 P------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGI 415 (431)
T ss_pred c------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeE
Confidence 2 1222 3456666665 899999999877666555444444445654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=66.45 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHH----hcCcc---hhh--hhccccCCCCC-CCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF----DRGLI---GMY--HDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~----eRgli---g~~--~d~ce~~lpfP-~sFDlVh 233 (309)
+.++||.+|.+.|..+..|+.. +--. .++-++.. ++.+.|+ +-|+. ..+ .|.-+...-.. ++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4679999999999988888752 2000 23444443 3444443 33441 111 23333222244 9999997
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC--------------HHHHHHHHHHHHcCCC----eeeee--cce
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--------------LEMINKLKPVLHSLQW----STNIY--HDQ 293 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--------------~~~~~~i~~l~~~l~W----~~~~~--~e~ 293 (309)
... ++.+..+++.+.-+.|||||.+++.+- .....+++....-+.+ +.... .+.
T Consensus 138 IDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG 211 (219)
T COG4122 138 IDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG 211 (219)
T ss_pred EeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence 653 233456799999999999999998641 1344445555554444 44444 488
Q ss_pred EEEEEeC
Q 021643 294 FLVGKKG 300 (309)
Q Consensus 294 ~li~~K~ 300 (309)
++++.|.
T Consensus 212 l~v~~k~ 218 (219)
T COG4122 212 LLLSRKR 218 (219)
T ss_pred eEEEeec
Confidence 9999885
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00026 Score=78.15 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------------------ch-hhhhccccCC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------------------IG-MYHDWCESFN 223 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------------------ig-~~~d~ce~~l 223 (309)
.+|||+|||+|..+..|+.+.-. ..++++|.+ ++++.|.+. ++ +. ...|+. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~---~ 195 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL---G 195 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh---h
Confidence 47999999999999999874211 246677777 566655322 11 01 122332 2
Q ss_pred CCC---CCcceeEec--cccc------------ccc--------c----------cCC---HHHHHHHHhhcccCCeEEE
Q 021643 224 TYP---RTYDLLHSS--FLLS------------DVT--------Q----------RCD---IADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 224 pfP---~sFDlVh~~--~v~~------------~~~--------~----------~~~---~~~~L~Em~RVLRPGG~li 265 (309)
+++ ..||+|+++ ++-. |.+ + ..+ ..+++.+..++|||||+++
T Consensus 196 ~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 196 YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 233 269999987 2111 100 0 111 3678999999999999999
Q ss_pred EEeCHHHHHHHH-HHHHcCCCee
Q 021643 266 VQDTLEMINKLK-PVLHSLQWST 287 (309)
Q Consensus 266 i~D~~~~~~~i~-~l~~~l~W~~ 287 (309)
+--..+.-+.+. ++..+..|+.
T Consensus 276 lEiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 276 FNMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred EEECccHHHHHHHHHHHHCCCCe
Confidence 987666666777 5777666653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00057 Score=61.33 Aligned_cols=135 Identities=18% Similarity=0.259 Sum_probs=73.7
Q ss_pred cchhHHHHHHHHHHhccC-CCCCCCCeEEEeCCcchH--HHHHhhcCCCEEEEecccCCc-ccH-HHHHhcCc--chhhh
Q 021643 144 DTTHWYALVSDVYVGGLA-INWSSVRNVMDMNASYGG--FAAALIDQPLWVMNVVPIDAP-DTL-SIIFDRGL--IGMYH 216 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~-i~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~~V~p~d~s-~~l-~~a~eRgl--ig~~~ 216 (309)
..+.|.+++.+.-. .+. +... ..+++|+|+|-|- .-.++......+.=+.+..-. .-+ .++.+=|| +.+++
T Consensus 27 ~~~~~~~Hi~DSL~-~~~~~~~~-~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~ 104 (184)
T PF02527_consen 27 PEEIWERHILDSLA-LLPFLPDF-GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVIN 104 (184)
T ss_dssp HHHHHHHHHHHHHG-GGGCS-CC-CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEE
T ss_pred HHHHHHHHHHHHHH-hhhhhccC-CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEE
Confidence 34667666654211 111 2222 2279999999883 333333333332223232111 223 33444466 33555
Q ss_pred hccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---HHHHHHHHHHHcCCCeee
Q 021643 217 DWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 217 d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---~~~~~i~~l~~~l~W~~~ 288 (309)
.-.|. ..++.+||+|.|.-+- .+..++.-+.+.|+|||.+++---. +.+++.++-.+.+.++..
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv~-------~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAVA-------PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESSS-------SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred eeecc-cccCCCccEEEeehhc-------CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 55554 3445999999987543 2566888889999999999887543 445555555566666543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=68.51 Aligned_cols=102 Identities=17% Similarity=0.199 Sum_probs=62.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..|++++. .|.++|.+ .+++.+.+ .|+. . ...|. +...+-+ +.||+|+++
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~-~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDS-TQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH-HHHHHhcCCCCeEEEEC---
Confidence 6899999999999999998753 46667776 56665543 3431 1 11121 1112213 679999876
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPV 279 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l 279 (309)
+++.++...+.++-.-++|++.++++-.... ...++.+
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc
Confidence 3344444445555566889999999865553 3334444
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00021 Score=67.70 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCeEEEeCCcch----HHHHHhhcCCC----EEEEecccCCc-ccHHHHH----h-----cCcc-------------h-
Q 021643 166 SVRNVMDMNASYG----GFAAALIDQPL----WVMNVVPIDAP-DTLSIIF----D-----RGLI-------------G- 213 (309)
Q Consensus 166 ~~r~VLD~GCG~G----~faa~L~~~~v----~v~~V~p~d~s-~~l~~a~----e-----Rgli-------------g- 213 (309)
+.-+|.-+||+|| +.|..|.+... +.+.|.+.|.+ ..|+.|. . +|+. +
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3567999999999 46666666432 35678888887 4565543 1 3321 1
Q ss_pred -------------hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 214 -------------MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 214 -------------~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
..|+-- ...++++-||+|+|.+|+.++.. ..-.+++..++..|+|||++++-.+..
T Consensus 176 y~v~~~ir~~V~F~~~NLl-~~~~~~~~fD~IfCRNVLIYFd~-~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLL-DDSPFLGKFDLIFCRNVLIYFDE-ETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEEChHHhcccEEeecCCC-CCccccCCCCEEEEcceEEeeCH-HHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 112211 12236699999999999998753 345789999999999999999965543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00047 Score=64.55 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=78.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCcccHHHH----HhcCc----ch-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAPDTLSII----FDRGL----IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s~~l~~a----~eRgl----ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
-.+|||.+.|.|.+|..-.+++. .|..|.-. . +.|+.| ..|++ +. .++|..+.--.|+ .|||+|+-.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd-p-~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKD-P-NVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeC-C-CeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 46899999999999999888876 55443211 1 111111 12222 11 2233223345688 899998642
Q ss_pred -cccccccccCCHHHHHHHHhhcccCCeEEEEEe--------CHHHHHHHHHHHHcCCCeeeee-cceE-EEEEeC
Q 021643 236 -FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD--------TLEMINKLKPVLHSLQWSTNIY-HDQF-LVGKKG 300 (309)
Q Consensus 236 -~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D--------~~~~~~~i~~l~~~l~W~~~~~-~e~~-li~~K~ 300 (309)
==|++-. .---+.+-.|++|||||||.++--. -.+....+.+.+++..+.+... .+.. ++++|+
T Consensus 213 PPRfS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~k~ 287 (287)
T COG2521 213 PPRFSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAVKP 287 (287)
T ss_pred CCccchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEecC
Confidence 1122111 0113678999999999999877532 1356778888888888884433 4444 667764
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00023 Score=62.66 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcc---cHHHHHhcCc-------chhhhhccccC--CCCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD---TLSIIFDRGL-------IGMYHDWCESF--NTYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~---~l~~a~eRgl-------ig~~~d~ce~~--lpfP-~sFD 230 (309)
.+..+||++|||+|-.+..++.. +. ..|+-.|.++ .++...++.. .....+|.+.. .... +.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~--~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGA--ARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T---SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhccCC--ceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34579999999999666666554 21 1233344432 2222222211 12334675421 1123 7899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+++.|+..- ...+.++.=+.++|+|+|.+++...
T Consensus 122 ~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999999743 3467788889999999999887643
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=61.83 Aligned_cols=114 Identities=22% Similarity=0.229 Sum_probs=67.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCCCC
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRT 228 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP~s 228 (309)
.+++.++ .+|||.|.|+|.++++|+.. +-+ -.|...+.. +..+.|.+. |+.. ...|.++ .-++..
T Consensus 89 ~~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~-G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~--~~~~~~ 163 (256)
T COG2519 89 RLGISPG--SRVLEAGTGSGALTAYLARAVGPE-GHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE--GIDEED 163 (256)
T ss_pred HcCCCCC--CEEEEcccCchHHHHHHHHhhCCC-ceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc--cccccc
Confidence 4556554 58999999999999999951 111 123333333 334444332 4421 1234433 334479
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCC
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQW 285 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W 285 (309)
||.|+.. ++ ++.++|.-++.+|+|||.+++-- ..+.+++.-.-++..+|
T Consensus 164 vDav~LD-----mp---~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 164 VDAVFLD-----LP---DPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cCEEEEc-----CC---ChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 9998653 33 46779999999999999888753 34434443333333344
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00042 Score=65.09 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=35.5
Q ss_pred CCCCC-CCcceeEecccc--cccc-ccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 222 FNTYP-RTYDLLHSSFLL--SDVT-QRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 222 ~lpfP-~sFDlVh~~~v~--~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++-+- +-||+|.|-.+- .|+. .+.++..++.-+.|.|+|||++|+--+
T Consensus 159 fl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 159 FLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred hhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 34455 789999985432 2332 335699999999999999999999643
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0015 Score=62.53 Aligned_cols=121 Identities=21% Similarity=0.376 Sum_probs=73.1
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---ch
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IG 213 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig 213 (309)
-+++.|...|.+ -+++.. ......+||+|||+|-.+..|+.. + . ..++++|.+ .++..|.+. ++ ++
T Consensus 128 pETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 128 PETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred ccHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 356778888876 333321 122237999999999998888763 2 1 135566666 344444433 22 44
Q ss_pred hhhhcc--ccCCCCC---CCcceeEec--cccc------------ccc-------cc--CCHHHHHHHHhhcccCCeEEE
Q 021643 214 MYHDWC--ESFNTYP---RTYDLLHSS--FLLS------------DVT-------QR--CDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 214 ~~~d~c--e~~lpfP---~sFDlVh~~--~v~~------------~~~-------~~--~~~~~~L~Em~RVLRPGG~li 265 (309)
+.|..- +...|+| +.+|+++|+ ++.+ |.+ .. ..+..++.=.-|.|+|||.+.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 443311 2345665 999999987 3332 110 00 114456777889999999999
Q ss_pred EEe
Q 021643 266 VQD 268 (309)
Q Consensus 266 i~D 268 (309)
+.-
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 974
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00056 Score=62.72 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=61.1
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc--chhhhhccccCCCCC--C
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL--IGMYHDWCESFNTYP--R 227 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl--ig~~~d~ce~~lpfP--~ 227 (309)
.++.|.++++ .+||++|||+|..+|-|++..-.|.+|.-.. ...+.|.++ |+ +.+.+. ....-|| .
T Consensus 64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~--~L~~~A~~~L~~lg~~nV~v~~g--DG~~G~~~~a 137 (209)
T COG2518 64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIE--ELAEQARRNLETLGYENVTVRHG--DGSKGWPEEA 137 (209)
T ss_pred HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcH--HHHHHHHHHHHHcCCCceEEEEC--CcccCCCCCC
Confidence 3444555544 6899999999999999988543443332221 122333322 33 222221 1346677 8
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.||.|+.......++. .| .+-|||||.+++-.-
T Consensus 138 PyD~I~Vtaaa~~vP~------~L---l~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE------AL---LDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH------HH---HHhcccCCEEEEEEc
Confidence 9999999888876552 23 346999999998543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00049 Score=69.56 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=66.4
Q ss_pred CchhhhcccchhHHHHHHH--HHHhccCCCCC----CCCeEEEeCCcchHHHHHhhcC------CCEEEEecccCCc-cc
Q 021643 136 DSEEAFNKDTTHWYALVSD--VYVGGLAINWS----SVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DT 202 (309)
Q Consensus 136 ~~~e~F~~d~~~W~~~v~~--~y~~~l~i~~~----~~r~VLD~GCG~G~faa~L~~~------~v~v~~V~p~d~s-~~ 202 (309)
.+-|.|+.|.-.-...-.. ..+.... ... +...|||+|||+|-++..-++. .+.|..|...... .+
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~-~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRV-RKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHH-TTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhh-hhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 4567899888766543321 1222111 111 2357999999999886443322 2344444433222 23
Q ss_pred HH-HHHhcCc---chhhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 203 LS-IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 203 l~-~a~eRgl---ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
++ .+.+.|. +.+++.-.+ ....|...|+|++-.+=+ +-+.+-+...|.-.+|.|||||.+|
T Consensus 230 l~~~v~~n~w~~~V~vi~~d~r-~v~lpekvDIIVSElLGs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIHGDMR-EVELPEKVDIIVSELLGS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHTTTTTTEEEEES-TT-TSCHSS-EEEEEE---BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCccc-CCCCCCceeEEEEeccCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 32 2244454 333332111 344467999999864333 3344456778999999999999865
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00028 Score=68.86 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=61.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc----cHHHHHhcCc---chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD----TLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~----~l~~a~eRgl---ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
-+.|||+|||||-++..-++.|. ..|.+++.++ ..+++.+.|+ +.++..--| ..-.| ...|+|++-..=
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvE-di~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVE-DIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceE-EEecCccceeEEeehhhh
Confidence 46899999999998887777663 2344555553 4556666676 222222122 13445 999999986322
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
..+-....+..+|.-=+|=|+|||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2211112355678888999999998653
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=7.2e-05 Score=65.98 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=40.3
Q ss_pred CCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 222 FNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 222 ~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.++|. +|.|+|.|.++++|+.-+ +-..++.|.+|+|||||++-|+
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 58898 999999999999998753 4578999999999999999997
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=65.37 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=63.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||++||+|.|+..++.++. .|+++|.+ .+++.+.+. |+ +. ...|. +..++-. +.||+|+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~-~~~~~~~~~~~D~vi~D--- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS-AKFATAQMSAPELVLVN--- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHHhcCCCCCEEEEC---
Confidence 5899999999999999997653 45566665 455555432 32 11 11111 1122212 569999876
Q ss_pred ccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeee
Q 021643 239 SDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTN 288 (309)
Q Consensus 239 ~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~ 288 (309)
+++.++ ..++..+. -++|++.++++-.... ...++.+ -.|+..
T Consensus 308 ---PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 ---PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ---CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 233332 34444443 4899999999977664 3445555 246544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0017 Score=61.70 Aligned_cols=118 Identities=17% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccH---HHHHhc----C----------------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTL---SIIFDR----G---------------------------- 210 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l---~~a~eR----g---------------------------- 210 (309)
.-+||==|||.|.++-.++.+|..+ .+.+.| -|+ .+++.. +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~---~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAV---QGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceE---EEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999987643 333333 221 222221 0
Q ss_pred ------------cchhhhhccccCCCC--CCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE--------e
Q 021643 211 ------------LIGMYHDWCESFNTY--PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------D 268 (309)
Q Consensus 211 ------------lig~~~d~ce~~lpf--P~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D 268 (309)
+.-..+|+++-..+- -++||.|.+.+++--. .++.++|..|.++|||||++|=. +
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 011223333321111 1599998887544322 35889999999999999976642 2
Q ss_pred C-------HH-HHHHHHHHHHcCCCeeeee
Q 021643 269 T-------LE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 269 ~-------~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
. .+ ..++|..+++++.|+...+
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 2 22 4899999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0033 Score=59.45 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh--cCcchhh-----hhccccCCCCCCCcceeEec
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD--RGLIGMY-----HDWCESFNTYPRTYDLLHSS 235 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e--Rglig~~-----~d~ce~~lpfP~sFDlVh~~ 235 (309)
...++|||+|||+|...-+..+. + ....+..+|.+ .|++++.. +...... ...-....+++ ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP-PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC-CCcEEEEe
Confidence 34578999999999766555441 2 23456777877 46655432 1111100 00001123333 33999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~ 289 (309)
++|..+.+ ....+++..+.+-+.+ ++||.|. -+.+.++++.+....+.+.+
T Consensus 110 ~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceEC
Confidence 99998887 6677888888887766 8888875 34678888887655555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00097 Score=65.17 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=65.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCCCCcceeEeccccccccccC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~ 245 (309)
.....+|+|.|.|..+..+..+--+ +..+..|.+..++.+..-+ .|+-|-.+.-+-.-| .=|+|+...+++||.| .
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD-e 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLPFVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD-E 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHHHHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCCh-H
Confidence 4678999999999999888873212 2333344442222222211 222222122222234 3359999999999986 5
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+..++|.-++.-|+|||.+++-|.
T Consensus 253 dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Confidence 688999999999999999999875
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=59.27 Aligned_cols=95 Identities=8% Similarity=0.099 Sum_probs=51.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..++.++. ..|+.++.+ ..++.+.+ .|+ +. ...|. ...++.+ ++||+|+++==+
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~-~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA-LSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH-HHHHhhcCCCceEEEECCCC
Confidence 4899999999999975444432 234555554 34433332 222 11 11222 1223334 679999876222
Q ss_pred ccccccCC-HHHHHHHHh--hcccCCeEEEEEeCH
Q 021643 239 SDVTQRCD-IADVAVEMD--RILRPGGYVLVQDTL 270 (309)
Q Consensus 239 ~~~~~~~~-~~~~L~Em~--RVLRPGG~lii~D~~ 270 (309)
. .+ .+.++.-+. .+|+|+|.+++.-..
T Consensus 132 ~-----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 R-----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C-----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 12 233444333 348999999988544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.001 Score=57.10 Aligned_cols=89 Identities=13% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCeEEEeCCcchH-HHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC--CCcceeEeccccccc
Q 021643 166 SVRNVMDMNASYGG-FAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP--RTYDLLHSSFLLSDV 241 (309)
Q Consensus 166 ~~r~VLD~GCG~G~-faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP--~sFDlVh~~~v~~~~ 241 (309)
+..+|||+|||+|. +|..|.+.+. +|+++|.+ +.++.+.++++..+..|.-+ .++. +.+|+|.+.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~--p~~~~y~~a~liysirp---- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFN--PNLEIYKNAKLIYSIRP---- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCC--CCHHHHhcCCEEEEeCC----
Confidence 34689999999995 9999998775 56667777 57888888887666666432 2233 88999876432
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
..++...+.++.+-+ |.-++|.
T Consensus 87 --p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 87 --PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred --CHHHHHHHHHHHHHc--CCCEEEE
Confidence 224555666666543 3444443
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0018 Score=62.34 Aligned_cols=127 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCCCCeEEEeCCcchHHHHHh-hcCCCEEEEecccCCc--c---cHHHHHhcCcchh--hh-hccccCCCCC---CCcce
Q 021643 164 WSSVRNVMDMNASYGGFAAAL-IDQPLWVMNVVPIDAP--D---TLSIIFDRGLIGM--YH-DWCESFNTYP---RTYDL 231 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L-~~~~v~v~~V~p~d~s--~---~l~~a~eRglig~--~~-d~ce~~lpfP---~sFDl 231 (309)
.+..-+||||.||.|...-.. .+.+....+|.-.|.+ + .-+.+.+||+..+ ++ .-|-..-.|. -..++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 355678999999999864333 3333323355555665 2 3467888998443 11 0011111232 45699
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHHc----CCCeeeee
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHS----LQWSTNIY 290 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~----l~W~~~~~ 290 (309)
++.+.+++.+++..-+...|.-+.+.|.|||++|.+.++ .-++.|...+.+ .-|-++-.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEec
Confidence 999999999987666777899999999999999999753 345566666654 35765543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0019 Score=59.56 Aligned_cols=112 Identities=18% Similarity=0.255 Sum_probs=75.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCC-C-CCcceeEeccccccccccC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTY-P-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpf-P-~sFDlVh~~~v~~~~~~~~ 245 (309)
-++|||||=....+ +...+ ..+|+++|...+-+-+. ..|+-+..+|- + +.||+|.++.|+..+++..
T Consensus 53 lrlLEVGals~~N~--~s~~~--~fdvt~IDLns~~~~I~-------qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNA--CSTSG--WFDVTRIDLNSQHPGIL-------QQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCc--ccccC--ceeeEEeecCCCCCCce-------eeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 57999998744322 22222 24677777763222222 22444433443 3 8999999999999998766
Q ss_pred CHHHHHHHHhhcccCCeE-----EEEEeCH------H--HHHHHHHHHHcCCCeeeee
Q 021643 246 DIADVAVEMDRILRPGGY-----VLVQDTL------E--MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~-----lii~D~~------~--~~~~i~~l~~~l~W~~~~~ 290 (309)
+--+.+.-+++.|||+|. ++|.-+. . ..++++.|..+|.......
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 666789999999999999 6665321 1 2567889999999886554
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0073 Score=56.61 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=72.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c-cHHHHHhcCcc-------hhhhhccccC---CCCCCCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D-TLSIIFDRGLI-------GMYHDWCESF---NTYPRTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~-~l~~a~eRgli-------g~~~d~ce~~---lpfP~sFD 230 (309)
+.++||++|+++|..+.+|+.. +..+..+...... . ..+...+-|+. |...+.-... ..+.++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 3578999999999888777652 2334444432211 1 22233334541 2111110000 11347999
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---------H-----HHHH----HH----HHHHHcCCCeee
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---------L-----EMIN----KL----KPVLHSLQWSTN 288 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---------~-----~~~~----~i----~~l~~~l~W~~~ 288 (309)
+|+...- +.....++....+.|||||.+++.+. . .... .+ +.+...=+++..
T Consensus 159 ~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~ 232 (247)
T PLN02589 159 FIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEIC 232 (247)
T ss_pred EEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9986532 23355677788899999999887531 0 1111 12 233455567665
Q ss_pred ee--cceEEEEEeC
Q 021643 289 IY--HDQFLVGKKG 300 (309)
Q Consensus 289 ~~--~e~~li~~K~ 300 (309)
+. .+.+++++|.
T Consensus 233 llPigDGl~l~~k~ 246 (247)
T PLN02589 233 MLPVGDGITLCRRI 246 (247)
T ss_pred EEEeCCccEEEEEe
Confidence 54 6788888885
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=63.45 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-c---cHHHHHhc-Ccch--h-hhhccccCCCCCCCcceeE---
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-D---TLSIIFDR-GLIG--M-YHDWCESFNTYPRTYDLLH--- 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~---~l~~a~eR-glig--~-~~d~ce~~lpfP~sFDlVh--- 233 (309)
...+|||++||.|+=+.+|++. +-. ..|+++|.+ . .+....+| |+.. + ..|-......+|.+||.|.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 3468999999999977776652 100 135666665 2 23322333 5421 1 1221110124568899999
Q ss_pred -ec--ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 234 -SS--FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 234 -~~--~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+ .+|..-++. .+ =.++|....+.|||||+++.+..
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55 333321110 00 04678889999999999999864
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0024 Score=62.43 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcCc-c---------h-hhhhccccCCCCC-CCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRGL-I---------G-MYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRgl-i---------g-~~~d~ce~~lpfP-~sFDl 231 (309)
..++||-+|+|.|+.+..+.+.+ + ..|+-++.. ..++++.+.-. . . ...| +-.++.-. ++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D-a~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND-ARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh-hHHHHhhCCCCccE
Confidence 46799999999999999888753 3 234444444 35666654321 0 0 1111 11133334 78999
Q ss_pred eEeccccccccc-cC---CHHHHHH-HHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQ-RC---DIADVAV-EMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~-~~---~~~~~L~-Em~RVLRPGG~lii~ 267 (309)
|++.. ...... .+ --..++. .+.|.|+|||.+++.
T Consensus 180 Ii~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 99873 221100 00 0135676 899999999999875
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0021 Score=60.37 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=42.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchhhhhccccCCCCCC-CcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGMYHDWCESFNTYPR-TYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~~~d~ce~~lpfP~-sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++++. .++++|.+ ++++.+.++. +.-..+|.. ..+++. .+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~--~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL--KVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh--cCCHHHcCcceEEEe
Confidence 35899999999999999998753 45666766 5777776642 222233432 245552 26888877
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0034 Score=58.54 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++++. .++.+|.. .+++.+.++- +.-...| .+.++ ..||.|+++--+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D----~~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGD----ALKVDLPEFNKVVSNLPY 101 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEec----cccCCchhceEEEEcCCc
Confidence 46899999999999999998753 45566665 4666665542 1112223 33344 468999887443
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0084 Score=56.14 Aligned_cols=113 Identities=17% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCC----CCCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNT----YPRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lp----fP~sFDlVh~~~v~~~ 240 (309)
.+.+||+|+-||||.--+.+++. --|.++|.. +++.--.+... +-++.. +..+.- |....|++.|.-.|..
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~-tN~r~l~~~~~~~~~d~~v~DvSFIS 156 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLER-TNVRYLTPEDFTEKPDLIVIDVSFIS 156 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEec-CChhhCCHHHcccCCCeEEEEeehhh
Confidence 57999999999999999999875 235566665 45544443333 101100 011111 1145689999877763
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEE-------------------e---CHHHHHHHHHHHHcCCCeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQ-------------------D---TLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~-------------------D---~~~~~~~i~~l~~~l~W~~~ 288 (309)
+..+|-.+..+|.|+|.++.. | +..+++++.+.+....|.+.
T Consensus 157 ------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 157 ------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 456899999999999988874 2 24578999999999999864
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=55.58 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=64.8
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHH----HhcCcc----hhhhhccccCCC--
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGLI----GMYHDWCESFNT-- 224 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a----~eRgli----g~~~d~ce~~lp-- 224 (309)
.+++.+| .+||+.|.|+|+++.+|+.. ...+ .-.+.+ +..+.| .+.|+. ....|.|+.-.+
T Consensus 35 ~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v---~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 35 RLDIRPG--SRVLEAGTGSGSLTHALARAVGPTGHV---YTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEE---EEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCeEE---EccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4556665 58999999999999999852 1233 233444 333333 334552 234566643221
Q ss_pred CCCCcceeEeccccccccccCCHHHHHHHHhhcc-cCCeEEEEE-eCHHHHHHHHHHHHcCCCee
Q 021643 225 YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRIL-RPGGYVLVQ-DTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 225 fP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVL-RPGG~lii~-D~~~~~~~i~~l~~~l~W~~ 287 (309)
..+.||.|+.. +++ +-.++.-+.++| ||||++.+- -..+.+.+.-.-++...|.-
T Consensus 110 ~~~~~DavfLD-----lp~---Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFLD-----LPD---PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEEE-----SSS---GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEEe-----CCC---HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 23789988643 332 344899999999 999987765 44554445444445556653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0097 Score=56.34 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=60.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhc-c---ccCCC-CCCCcceeEe
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDW-C---ESFNT-YPRTYDLLHS 234 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~-c---e~~lp-fP~sFDlVh~ 234 (309)
..+..++||=+|-|-|+.++.+.+.+- .|+-++.- ..++.+++--. .+.+.|- . ..... ..++||+|+.
T Consensus 69 ~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIv 145 (262)
T PRK00536 69 TKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred hCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEE
Confidence 345679999999999999999999863 34444443 34444443111 0001110 0 00111 1378999998
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...+. +.+...+.|.|+|||.++..-
T Consensus 146 Ds~~~--------~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 146 LQEPD--------IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred cCCCC--------hHHHHHHHHhcCCCcEEEECC
Confidence 85432 347789999999999999964
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.01 Score=58.22 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=67.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhh--hhcc-ccCCCCC-CCcceeEec--c
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMY--HDWC-ESFNTYP-RTYDLLHSS--F 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~--~d~c-e~~lpfP-~sFDlVh~~--~ 236 (309)
.+|||==||||+|+....=.| .++.+.|.. .|++-|.. ++ +..+ ...| -..+|++ ++||.|.+. +
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~-Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKI-NLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhh-hhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 489999999999875543333 466777887 56655432 22 1111 1111 1368999 889999986 1
Q ss_pred ccccccccCC----HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHH
Q 021643 237 LLSDVTQRCD----IADVAVEMDRILRPGGYVLVQDTLEMINKLKP 278 (309)
Q Consensus 237 v~~~~~~~~~----~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~ 278 (309)
.-+.-..... ..++|.++.++|++||++++.-+.....+..+
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~ 320 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE 320 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence 1111111112 66899999999999999999876444444443
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.015 Score=56.66 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=27.3
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHH
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~ 207 (309)
.+...+|||+|||+|..+..|+.+ ..| .++++|.. .+++.|.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~ 155 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQ 155 (321)
T ss_pred CCCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHH
Confidence 344578999999999888887653 222 45666665 3444443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.043 Score=51.06 Aligned_cols=93 Identities=20% Similarity=0.361 Sum_probs=61.5
Q ss_pred CCeEEEeCCcchHHHHHhhc----CC-CEEEEecccCCcccHHHHHhcC-cchhhhhccccCCC--CC---CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALID----QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT--YP---RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~----~~-v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lp--fP---~sFDlVh~~ 235 (309)
..+||-+|+.+|.+..++++ .| |..+...|....+.+..|.+|- ++..+.| ++.| |. ...|+|++.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~D---Ar~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILED---ARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES----TTSGGGGTTTS--EEEEEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeecc---CCChHHhhcccccccEEEec
Confidence 45899999999999888876 22 3333444443346788888885 5566666 2333 22 678888765
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+.+..+.+-++.-+..-||+||.++|.
T Consensus 151 -----VaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 151 -----VAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp ------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 233445566888888999999999986
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=53.65 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|+++... ++.+|.. ++++.+.++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~ 70 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKL 70 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHH
Confidence 468999999999999999987543 4444554 455555443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.1 Score=51.43 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhh-hhccccCCCCCCCcceeEeccccccccccC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMY-HDWCESFNTYPRTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~-~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~ 245 (309)
..++||+||++|||+-.|.+++.. |+++|...+-+...+.+-+..+ .+-. ...|-++.+|+++|..+-.
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~~---V~AVD~g~l~~~L~~~~~V~h~~~d~f-r~~p~~~~vDwvVcDmve~------ 281 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGMF---VTAVDNGPMAQSLMDTGQVEHLRADGF-KFRPPRKNVDWLVCDMVEK------ 281 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCE---EEEEechhcCHhhhCCCCEEEEeccCc-ccCCCCCCCCEEEEecccC------
Confidence 468999999999999999999864 5555644433333333332111 1111 1233248899999986543
Q ss_pred CHHHHHHHHhhcccCC--eEEEEE
Q 021643 246 DIADVAVEMDRILRPG--GYVLVQ 267 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPG--G~lii~ 267 (309)
+.+++.=|.+-|..| ..+|+.
T Consensus 282 -P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 282 -PARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -HHHHHHHHHHHHhcCcccEEEEE
Confidence 455666666777665 456665
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0084 Score=59.87 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=81.3
Q ss_pred hhcccchhHHHHHHH-HHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch
Q 021643 140 AFNKDTTHWYALVSD-VYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG 213 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~-~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig 213 (309)
.+..++..|-..-.. .++..+ +. -++|||+=|-||+|+.+-+..|. -.++.+|.| ..|+.+.+. |+..
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~-~~---GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~ 267 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGEL-AA---GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDG 267 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhh-cc---CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCc
Confidence 344566666553322 133222 11 35899999999999998888775 245667887 467776654 3322
Q ss_pred hhhhccc----cCCCCC-C---CcceeEec---ccccc---ccccCCHHHHHHHHhhcccCCeEEEEEeCH------HHH
Q 021643 214 MYHDWCE----SFNTYP-R---TYDLLHSS---FLLSD---VTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMI 273 (309)
Q Consensus 214 ~~~d~ce----~~lpfP-~---sFDlVh~~---~v~~~---~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~ 273 (309)
.-|.|-. ..+.+- + +||+|+.. +.=+- +.-..+..+++.+..++|+|||.++++... ..+
T Consensus 268 ~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~ 347 (393)
T COG1092 268 DRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFL 347 (393)
T ss_pred cceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHH
Confidence 1122211 123333 3 99999874 11110 111124667899999999999999998653 345
Q ss_pred HHHHHHHHcC
Q 021643 274 NKLKPVLHSL 283 (309)
Q Consensus 274 ~~i~~l~~~l 283 (309)
+.+.+-+...
T Consensus 348 ~~i~~a~~~~ 357 (393)
T COG1092 348 EIIARAAAAA 357 (393)
T ss_pred HHHHHHHHhc
Confidence 5555554444
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.015 Score=52.87 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=54.6
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccH-HHHHhcCcch--
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTL-SIIFDRGLIG-- 213 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l-~~a~eRglig-- 213 (309)
+|......-+.++.+ . +.. ..+|+||-||.|.|+..+++ ++..|..+.-...+ +.+ +.+...++.+
T Consensus 83 yfs~rl~~Er~Ri~~-~-----v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i 154 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN-L-----VKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI 154 (200)
T ss_dssp ---GGGHHHHHHHHT-C-------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE
T ss_pred EEccccHHHHHHHHh-c-----CCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE
Confidence 455554555555543 1 222 46899999999999999887 44444333222112 222 3333334422
Q ss_pred --hhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 214 --MYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 214 --~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
...| |...++ ...||-|+++. +.. ...+|.+..+.+|+||.+-
T Consensus 155 ~~~~~D-~~~~~~-~~~~drvim~l-----p~~--~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 155 EVINGD-AREFLP-EGKFDRVIMNL-----PES--SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEES--GGG----TT-EEEEEE-------TSS--GGGGHHHHHHHEEEEEEEE
T ss_pred EEEcCC-HHHhcC-ccccCEEEECC-----hHH--HHHHHHHHHHHhcCCcEEE
Confidence 2233 332333 58999887753 211 1237899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.011 Score=58.54 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=66.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEE--EEecccCCcccHHH---HHhcCcchh-----hhhccccCCCCC--CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWV--MNVVPIDAPDTLSI---IFDRGLIGM-----YHDWCESFNTYP--RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v--~~V~p~d~s~~l~~---a~eRglig~-----~~d~ce~~lpfP--~sFDlVh~ 234 (309)
...|||+|.|.|.-+.++.+ +|- -+++-+..+..+.. -.++..... ..+..+.++++| ..|++|+.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~--i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALND--IWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcc--cCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 45699999999986655543 220 11122222322211 112222111 112223467887 99999988
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----HHHHHHHHHH
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVL 280 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~ 280 (309)
.+=+-|....-.+...+.-...+++|||.++|.+.- +.|.+.+.++
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~l 242 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQIL 242 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHH
Confidence 766665554444666888899999999999998753 3455555554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.0099 Score=59.01 Aligned_cols=91 Identities=18% Similarity=0.197 Sum_probs=55.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcch--hhhhccccCCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLIG--MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rglig--~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.+|||++||+|.++..++.. ++ ..|..+|.. ++++.+.+ .|+.. .+..-++..+.-.+.||+|..+= +
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 47999999999999998753 32 235556665 34444432 23311 11111111121145699998752 1
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.....++....+.+||||++.++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 12345777767889999999997
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.013 Score=56.07 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++.+. .+..+|.. ++++.+.++ ++ +. ...| .+.++ ..||.|+++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D----al~~~~~~~d~VvaN 108 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD----ALKTEFPYFDVCVAN 108 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC----HhhhcccccCEEEec
Confidence 35899999999999999988653 34555665 466655543 21 11 2223 34455 679999887
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.12 Score=47.66 Aligned_cols=136 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHH--hhcCCCEEEEecccCCc----ccHH-HHHhcCc--ch
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAA--LIDQPLWVMNVVPIDAP----DTLS-IIFDRGL--IG 213 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~--L~~~~v~v~~V~p~d~s----~~l~-~a~eRgl--ig 213 (309)
...+.|.+++.+.-.-...+... ..+++|+|+|.|-=+.- +...... ++-+|.. .-|+ .+.+=|+ +.
T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~-~~~~~DIGSGaGfPGipLAI~~p~~~---vtLles~~Kk~~FL~~~~~eL~L~nv~ 120 (215)
T COG0357 45 DPEELWQRHILDSLVLLPYLDGK-AKRVLDIGSGAGFPGIPLAIAFPDLK---VTLLESLGKKIAFLREVKKELGLENVE 120 (215)
T ss_pred CHHHHHHHHHHHHhhhhhccccc-CCEEEEeCCCCCCchhhHHHhccCCc---EEEEccCchHHHHHHHHHHHhCCCCeE
Confidence 34577877665421100011111 36899999999843333 3333332 3444443 2233 3344466 34
Q ss_pred hhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE---EeCHHHHHHHHHHHHcCCCeeee
Q 021643 214 MYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV---QDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 214 ~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii---~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
+++.-.|.+-+-+ . ||+|.|..+-+ +..++.=....||+||.++. .-..+.+.+++.......+.+..
T Consensus 121 i~~~RaE~~~~~~~~-~D~vtsRAva~-------L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 121 IVHGRAEEFGQEKKQ-YDVVTSRAVAS-------LNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred EehhhHhhccccccc-CcEEEeehccc-------hHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 4555444333222 2 99998864332 44456666789999998753 34456677777777777777654
Q ss_pred e
Q 021643 290 Y 290 (309)
Q Consensus 290 ~ 290 (309)
+
T Consensus 193 ~ 193 (215)
T COG0357 193 V 193 (215)
T ss_pred E
Confidence 4
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.03 Score=54.41 Aligned_cols=97 Identities=12% Similarity=0.118 Sum_probs=58.3
Q ss_pred CeEEEeCCcchHHHHH----hhcCCCEEEEecccCCc-ccHHHHHhcC------------cchhhhhccccCCCC---CC
Q 021643 168 RNVMDMNASYGGFAAA----LIDQPLWVMNVVPIDAP-DTLSIIFDRG------------LIGMYHDWCESFNTY---PR 227 (309)
Q Consensus 168 r~VLD~GCG~G~faa~----L~~~~v~v~~V~p~d~s-~~l~~a~eRg------------lig~~~d~ce~~lpf---P~ 227 (309)
..++|+|||.|.=... |...+. ...-+|+|.| +.|+.+.++- +.|.|.+- -..++= +.
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~-l~~l~~~~~~~ 155 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG-LAWLKRPENRS 155 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH-HhhcccccccC
Confidence 4799999999975443 332221 1356899998 5676655431 12333220 011221 23
Q ss_pred CcceeEe-ccccccccccCCHHHHHHHHhh-cccCCeEEEEE
Q 021643 228 TYDLLHS-SFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~-~~v~~~~~~~~~~~~~L~Em~R-VLRPGG~lii~ 267 (309)
...++.. ...+.++.. .+...+|.++.+ .|+|||.++|.
T Consensus 156 ~~r~~~flGSsiGNf~~-~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSR-PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CccEEEEeCccccCCCH-HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 4555544 335555543 346689999999 99999999994
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.033 Score=51.38 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCC-CCcceeEec--ccc--cccccc--------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 224 TYP-RTYDLLHSS--FLL--SDVTQR--------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 224 pfP-~sFDlVh~~--~v~--~~~~~~--------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
.+| +|+|+|+++ +.. .+...+ +-++.++.|++|||||||.+++.-....+..+....+...|.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 567 888888876 111 110000 114578999999999999988743322223333344444443
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.026 Score=51.77 Aligned_cols=129 Identities=14% Similarity=0.288 Sum_probs=71.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC---C--CEEEEecccCCcccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEecccc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---P--LWVMNVVPIDAPDTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL- 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~--v~v~~V~p~d~s~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~- 238 (309)
...|+|+||-.|||+..++++ + +.+.++.|.+....+.++...-. .....+. .--++ ..+|+|.+...=
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l---~~~l~~~~~DvV~sD~ap~ 122 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKL---LEALGGAPVDVVLSDMAPN 122 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHH---HHHcCCCCcceEEecCCCC
Confidence 458999999999999888763 2 56667777776532221110000 0001110 11233 447888865222
Q ss_pred -------ccccccCCHHHHHHHHh-hcccCCeEEEEEe-----CHHHHHHHHHHHHcCC----Ceeeee-cceEEEEEe
Q 021643 239 -------SDVTQRCDIADVAVEMD-RILRPGGYVLVQD-----TLEMINKLKPVLHSLQ----WSTNIY-HDQFLVGKK 299 (309)
Q Consensus 239 -------~~~~~~~~~~~~L~Em~-RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~----W~~~~~-~e~~li~~K 299 (309)
.|... -.+.....|+. ++|+|||-|++-+ ..+.+..++.+.+.++ |..+.. .|-.+++.+
T Consensus 123 ~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 123 TSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAKG 200 (205)
T ss_pred cCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEec
Confidence 12111 12344555555 5999999999974 4567777777766554 222222 455555543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=52.16 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCeEEEeCCcchHHH--HHhhcCCCE------EEEecccCCc-ccHHHHHhc----Ccchh--hhhccccCCCCC-CCcc
Q 021643 167 VRNVMDMNASYGGFA--AALIDQPLW------VMNVVPIDAP-DTLSIIFDR----GLIGM--YHDWCESFNTYP-RTYD 230 (309)
Q Consensus 167 ~r~VLD~GCG~G~fa--a~L~~~~v~------v~~V~p~d~s-~~l~~a~eR----glig~--~~d~ce~~lpfP-~sFD 230 (309)
...|||-=||+|++. +++...++. -..+.+.|.. ++++.+.+. |+... +..+--..++++ ++||
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 458999999999987 333333322 1113455555 455544432 33211 111111247766 9999
Q ss_pred eeEecccc--cccc---ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 231 LLHSSFLL--SDVT---QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 231 lVh~~~v~--~~~~---~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
.|+++-=+ ..-. ...-..+++.|+.|+|+|...+++....+. ++.+....|+..
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 99997211 1000 001134678999999999666666665544 333333356543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.027 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=18.8
Q ss_pred HHHHHHhhcccCCeEEEEEeCHH
Q 021643 249 DVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 249 ~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
.++.|..=+||+||.++....+.
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeHH
Confidence 47889999999999988775543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.041 Score=54.01 Aligned_cols=107 Identities=8% Similarity=0.185 Sum_probs=60.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------chhhhhccccC---CCC--------
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------IGMYHDWCESF---NTY-------- 225 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------ig~~~d~ce~~---lpf-------- 225 (309)
.+|||++||+|.|+.+|++..- .|.++|.+ .+++.+.+. |+ .+...++.... ..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 3599999999999999987532 35556665 466555543 33 11111111100 011
Q ss_pred -CCCcceeEeccccccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHHHHH-HHHHHHcCCCeee
Q 021643 226 -PRTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMINK-LKPVLHSLQWSTN 288 (309)
Q Consensus 226 -P~sFDlVh~~~v~~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~~~-i~~l~~~l~W~~~ 288 (309)
...||+|+.. +++.++ +.++.-+ ++|++.++++=+...+.+ ++.+.+ .|+..
T Consensus 285 ~~~~~D~v~lD------PPR~G~~~~~l~~l---~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 285 KSYNFSTIFVD------PPRAGLDDETLKLV---QAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred cCCCCCEEEEC------CCCCCCcHHHHHHH---HccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 1258998764 223332 3344444 448999999977665444 666654 46543
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.076 Score=48.82 Aligned_cols=107 Identities=19% Similarity=0.183 Sum_probs=66.2
Q ss_pred CCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc--------ccHHHHHhcCc--chhhhhccccCCCCCC
Q 021643 161 AINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--------DTLSIIFDRGL--IGMYHDWCESFNTYPR 227 (309)
Q Consensus 161 ~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s--------~~l~~a~eRgl--ig~~~d~ce~~lpfP~ 227 (309)
+++++ .+|.|+=-|.|.|.+-|+.. ...|-+++|.+.. .+-..++|.+. ...+..- .-.++-|+
T Consensus 45 Glkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~-~~A~~~pq 121 (238)
T COG4798 45 GLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP-LVALGAPQ 121 (238)
T ss_pred ccCCC--CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc-ccccCCCC
Confidence 35544 58999999999999888763 1256778887662 12223333333 1122110 01244237
Q ss_pred CcceeEecccccccc----ccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 228 TYDLLHSSFLLSDVT----QRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 228 sFDlVh~~~v~~~~~----~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
-.|++..+...+.++ +.....++-.++++.|||||.+.+.|+.
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 778777654443222 2345778999999999999999998753
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.049 Score=48.95 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-chhhhhccccCCCCC-CCcceeEe
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+.+.+...||.+|.|||-|..++.++++---++..+..+ +-...-.++ .+ .|..-+.-...--++ .-||.|+|
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEe
Confidence 444555689999999999999999987644445555444 222221111 11 222222100123467 88999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-=+-.++-. .-.++|.+..--|++||-++-.
T Consensus 124 ~lPll~~P~~-~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 124 GLPLLNFPMH-RRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccccCcHH-HHHHHHHHHHHhcCCCCeEEEE
Confidence 7555544422 2356899999999999988764
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.0076 Score=55.84 Aligned_cols=89 Identities=19% Similarity=0.327 Sum_probs=58.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
..++||+|+|-|.....++..- -.|-+...| .|...-..++. ++ ..+|.+. .=.||+|.|-.++ +
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~ynVl~-~~ew~~t----~~k~dli~clNlL----D 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNYNVLT-EIEWLQT----DVKLDLILCLNLL----D 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCCceee-ehhhhhc----CceeehHHHHHHH----H
Confidence 4789999999999877765421 123344445 35555555554 22 2233210 0239999998777 3
Q ss_pred cC-CHHHHHHHHhhcccC-CeEEEEE
Q 021643 244 RC-DIADVAVEMDRILRP-GGYVLVQ 267 (309)
Q Consensus 244 ~~-~~~~~L~Em~RVLRP-GG~lii~ 267 (309)
+| +.-.+|.+++-||+| .|.+|+.
T Consensus 181 Rc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred hhcChHHHHHHHHHHhccCCCcEEEE
Confidence 44 356799999999999 9998885
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.038 Score=51.18 Aligned_cols=89 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHH----------------HhcCcc-hhhhhccccCCCCC--
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII----------------FDRGLI-GMYHDWCESFNTYP-- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a----------------~eRgli-g~~~d~ce~~lpfP-- 226 (309)
.+.||+|.|+|.+.+.++.. +....+..+++.. +.++.+ +++|-. -+..| | +.-|+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD-g--r~g~~e~ 160 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD-G--RKGYAEQ 160 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC-c--cccCCcc
Confidence 47999999999877665521 1111223445443 223222 223311 11222 2 45565
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..||.||+.-.- .+..+++--.|+|||.++|--
T Consensus 161 a~YDaIhvGAaa---------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 161 APYDAIHVGAAA---------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CCcceEEEccCc---------cccHHHHHHhhccCCeEEEee
Confidence 899999997322 235778888899999988853
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.038 Score=50.24 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhhhhccccCCC-CCCCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNT-YPRTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~~d~ce~~lp-fP~sFDlVh~~ 235 (309)
+.|+|+|||||.++...+-.+.. .|.++|.- ++++++++.- +.+... +-++... |..-||.++.|
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~-f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVE-FVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceE-EEEcchhhcCCccceEEEC
Confidence 57999999999887555544421 12333332 3444443321 222111 1122333 44889988876
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.023 Score=50.51 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCCcceeEecccccccc--------ccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 224 TYPRTYDLLHSSFLLSDVT--------QRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 224 pfP~sFDlVh~~~v~~~~~--------~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
-|+++||.+.|-+.++|.. +...-.+.+.++.|+|||||.+++.-+
T Consensus 59 ~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 59 KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 5678899999998898742 223346789999999999999999754
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.025 Score=54.26 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=62.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h----hhhhccccCCC-C--CCCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G----MYHDWCESFNT-Y--PRTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g----~~~d~ce~~lp-f--P~sFDlVh~ 234 (309)
++|||+=|-||+|+.+-+..|. ..|+.+|.| ..++.+.+. |+. . ...|.-+ .+. . .+.||+|++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~-~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFK-FLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHH-HHHHHHHTT-EEEEEE
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHH-HHHHHhcCCCCCEEEE
Confidence 5899999999999998777664 245666777 466666554 331 1 0111100 011 1 278999987
Q ss_pred c---cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHc
Q 021643 235 S---FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHS 282 (309)
Q Consensus 235 ~---~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~ 282 (309)
. +.=+...-..+..+++...-++|+|||.+++.... ..++.+..-+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~ 258 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAARE 258 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCcc
Confidence 4 11111111123567888899999999999887543 234445555543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.026 Score=54.35 Aligned_cols=52 Identities=25% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
.++.+.+.++ ..++|++||.|+.+.++++..--...|.++|.. .++..+.++
T Consensus 11 vl~~L~~~pg--~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 11 VVDALAIKPD--GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHhhCCCCC--CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 4444544433 489999999999999998752111246777877 688887765
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.11 Score=53.12 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=28.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-------CEEEEecccCCc-ccHHHHH
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-------LWVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-------v~v~~V~p~d~s-~~l~~a~ 207 (309)
..+|||-+||+|+|..++.++. ....++.+.|.. ..+..+.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4589999999999998887531 123567777776 3555444
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.62 Score=43.12 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=72.5
Q ss_pred HHHHHHHhccC-CCCCCCCeEEEeCCcchHHHHHhhc---CC-CEEEEecccCCcccHHHHHhcC-cchhhhhccccCCC
Q 021643 151 LVSDVYVGGLA-INWSSVRNVMDMNASYGGFAAALID---QP-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNT 224 (309)
Q Consensus 151 ~v~~~y~~~l~-i~~~~~r~VLD~GCG~G~faa~L~~---~~-v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lp 224 (309)
......+..|. +.-....+||=+|+-+|....+.++ .| +..+.++|....+.+..+.+|- ++..+.| +..|
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~D---A~~P 136 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILED---ARKP 136 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecc---cCCc
Confidence 33333444443 2223346899999999999888876 34 4555666766667888888885 5566666 2333
Q ss_pred --CC---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 225 --YP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 225 --fP---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|. ...|+|++. +.++.+.+-+..-++.-||+||++++.
T Consensus 137 ~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 137 EKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred HHhhhhcccccEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 22 556777543 445556666888899999999988875
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.053 Score=53.56 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=64.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chhhhhccccCCCCCCCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+.|||+|||.|.++-.-+..|. -.|-++.+++|.+.|..- .+ |.++-.=-| ....|...|+|++--.=
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiE-dieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIE-DIELPEKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccc-cccCchhccEEEeccch
Confidence 357899999999976544444332 234556667776665431 11 111111011 46778899999885222
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE-------eCHHHHHHHHHHHHcCCCe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ-------DTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~-------D~~~~~~~i~~l~~~l~W~ 286 (309)
..+-+. .+..--.-..|-|+|.|..+=+ -..+..--++...+++-|-
T Consensus 254 ~mL~NE-RMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWy 307 (517)
T KOG1500|consen 254 YMLVNE-RMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWY 307 (517)
T ss_pred hhhhhH-HHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhh
Confidence 222222 2223333456999999986532 2233344455555666664
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.11 Score=48.53 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCeEEEeCCcchHHHHHhh----cCC-CEEEEecccCCcccHHHHHhcCc---ch-hhhhcccc----CCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALI----DQP-LWVMNVVPIDAPDTLSIIFDRGL---IG-MYHDWCES----FNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~----~~~-v~v~~V~p~d~s~~l~~a~eRgl---ig-~~~d~ce~----~lpfP-~sFDlV 232 (309)
.++.||+|.-||..+.+.+ +.| +..+++.+....-..++....|. +. ....-|++ .--+. +|||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4689999987776443333 333 23333332222224555555554 11 11111221 12246 999999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+. -|+++ .-.....+.-|.|||||.+++..
T Consensus 154 Fv----DadK~--nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DADKD--NYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccchH--HHHHHHHHHHhhcccccEEEEec
Confidence 74 34443 34478999999999999999864
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.17 Score=47.85 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHH
Q 021643 247 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPV 279 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l 279 (309)
+..+|.|+.|+|||||.+++.-....+..+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~~~~ 91 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFIDLY 91 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHHHHH
Confidence 357999999999999999987554444434333
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.21 Score=48.90 Aligned_cols=106 Identities=9% Similarity=0.171 Sum_probs=60.0
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc------chhhhhccccCC---CCC--------
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL------IGMYHDWCESFN---TYP-------- 226 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl------ig~~~d~ce~~l---pfP-------- 226 (309)
+|||++||+|.|+..|++... .|+++|.+ ++++.+.+. |+ .+...++..... .++
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 599999999999999987642 45666666 566665543 32 111122111100 010
Q ss_pred -CCcceeEeccccccccccCCH-HHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCeee
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWSTN 288 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~~ 288 (309)
..||+|+.. +++.++ ..++.- +++|++.++++=.+.. -..++.+.++ |++.
T Consensus 277 ~~~~d~v~lD------PPR~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 277 SYNCSTIFVD------PPRAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred cCCCCEEEEC------CCCCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 127887653 234443 334444 4458999999966654 4446666544 6543
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.38 Score=43.83 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=64.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEE--EecccCCcccHHHHHhcCc-c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVM--NVVPIDAPDTLSIIFDRGL-I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~--~V~p~d~s~~l~~a~eRgl-i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
...+|++|||+|.-..+|++. ++..+ ++.|....-+++-|.-.+. + .+..|. ....- ++.|++.-+-=+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl---~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDL---LSGLRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhH---HhhhccCCccEEEECCCc
Confidence 457999999999999888874 22222 2333322224555544432 1 111111 11111 556655544111
Q ss_pred --------------cccc---c-cCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeeeee
Q 021643 239 --------------SDVT---Q-RCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 239 --------------~~~~---~-~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~~~ 290 (309)
+.|. + +.-+.++|..+.-+|-|-|.|++.-... -.++|=++.+.-.|.+++.
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 1111 0 1115567888888999999998864332 2334444666677766544
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.19 Score=48.08 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=67.2
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc---h--------hhhhccccCCC-CCCCc
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI---G--------MYHDWCESFNT-YPRTY 229 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli---g--------~~~d~ce~~lp-fP~sF 229 (309)
..+..++||=+|-|.|++++.+.+.+- +-.++-++.- ..++.+++.-.. + .+.|- -..+. ++++|
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-~~~v~~~~~~f 150 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-VEFLRDCEEKF 150 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-HHHHHhCCCcC
Confidence 345558999999999999999998752 1233333333 244554433210 0 01110 01232 44799
Q ss_pred ceeEeccccccccccC--CHHHHHHHHhhcccCCeEEEEEeCH-----HHHHHHHHHHHcC
Q 021643 230 DLLHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVLHSL 283 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~~~l 283 (309)
|+|++...=. ..... --..++..+.|.|+|+|.++..... +.+..+.+-.+++
T Consensus 151 DvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v 210 (282)
T COG0421 151 DVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV 210 (282)
T ss_pred CEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh
Confidence 9998763211 11000 0157899999999999999998221 2334444445555
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=52.02 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.0
Q ss_pred CCC-CCcceeEecccccccc
Q 021643 224 TYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 224 pfP-~sFDlVh~~~v~~~~~ 242 (309)
-|| +|.+++|++..+|-+.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred ccCCCceEEEEeeccceecc
Confidence 489 9999999999997543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.07 Score=52.95 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+-||+|.++...+.+ ++ -.|+.+|.. ++++.+.+. ++ +.+++.-+...+... +.||+|...= |
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 7999999999999998876 33 245556665 344444332 22 111211112223333 6799998753 3
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. ....++...-+.+++||++.++
T Consensus 124 G------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C------CcHHHHHHHHHhcccCCEEEEE
Confidence 1 2345899999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.24 Score=46.20 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=68.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcCc----------ch-hhhhccccCC-CCCC-Ccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRGL----------IG-MYHDWCESFN-TYPR-TYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRgl----------ig-~~~d~ce~~l-pfP~-sFD 230 (309)
+.++||=+|-|.|+.+..+.+.+ +. .|+.++.. ..++.+.+--. .. ...| +-.++ ..++ +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~--~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D-g~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVE--SITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD-GRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-S--EEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST-HHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcc--eEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh-hHHHHHhccCCccc
Confidence 56899999999999999999865 32 23333333 24444433110 00 1111 11112 2344 999
Q ss_pred eeEeccccccccc-cCCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeeeee
Q 021643 231 LLHSSFLLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 231 lVh~~~v~~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
+|+....-..... .---..+++.+.|.|+|||.+++.- ..+.+..+.+.+++..-.+...
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY 218 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence 9987533211100 0012568999999999999999863 3445666666666665555443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.21 Score=47.30 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC------CCEEEEecccCCc-ccHHHHHh----cCcchh-hhhccccCC---CC--CC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFD----RGLIGM-YHDWCESFN---TY--PR 227 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~------~v~v~~V~p~d~s-~~l~~a~e----Rglig~-~~d~ce~~l---pf--P~ 227 (309)
....+|+|-.||+|+|..+..++ ...-.++.+.|.. .+...+.- +|.... .+-.+...+ .+ .+
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 33457999999999998777651 0011345555554 34444332 232111 000011111 11 15
Q ss_pred CcceeEeccccccc--c---------------ccCCH-HHHHHHHhhcccCCeEEEEEeCHHH
Q 021643 228 TYDLLHSSFLLSDV--T---------------QRCDI-ADVAVEMDRILRPGGYVLVQDTLEM 272 (309)
Q Consensus 228 sFDlVh~~~v~~~~--~---------------~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~ 272 (309)
.||+|+++==|... . ..... ..++.-+.+.|++||++++.-+...
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~ 187 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF 187 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence 89999987222111 0 00011 2477889999999999776655443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.029 Score=46.68 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=35.2
Q ss_pred CcceeEeccccc--ccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH--------HHHHHHHHHHHcCCCe
Q 021643 228 TYDLLHSSFLLS--DVT-QRCDIADVAVEMDRILRPGGYVLVQDTL--------EMINKLKPVLHSLQWS 286 (309)
Q Consensus 228 sFDlVh~~~v~~--~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~--------~~~~~i~~l~~~l~W~ 286 (309)
.||+|.|-.+-- |+. -++++..++.-+++.|||||.||+--+. ...+++..-.+++++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 389999865542 443 2346889999999999999999997542 1233444444555554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.11 Score=46.62 Aligned_cols=117 Identities=15% Similarity=0.248 Sum_probs=68.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCC---c-ccHHHHHhcCcch--------hhhhccccCCCCC-CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDA---P-DTLSIIFDRGLIG--------MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~---s-~~l~~a~eRglig--------~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+.||.+|.|.-++|..|....+..-+|--.|. + ..++-+..+.-.. -.+-| .+.+.-. ++||.|.|
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~-~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW-GAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh-hhHHHHhhCcccEEEe
Confidence 68999999998888777654322222322333 2 3445554444210 11112 2345555 89999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHHcCCCeee
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~~l~W~~~ 288 (309)
+.|+-.-.. .+.++.-|++.|||.|..++..+. +.+++.-+.+......+.
T Consensus 110 ADClFfdE~---h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 110 ADCLFFDEH---HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred ccchhHHHH---HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEE
Confidence 987743222 356788999999999987776542 244444444444444433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.29 Score=50.13 Aligned_cols=97 Identities=13% Similarity=0.281 Sum_probs=66.7
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-cHHHHHhcCc-----c-hhhhhccccCCCCC-CCcceeEecccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-TLSIIFDRGL-----I-GMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-~l~~a~eRgl-----i-g~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
++|=+|||.-.+...+.+.+. -+|.-+|.|. .+.....++. . -...|. ..+.|+ .+||+|+.-..+.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~--~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM--DQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecc--hhccCCCcceeEEEecCcccc
Confidence 899999999999888888664 3556666663 4555555542 1 112221 258999 99999998777766
Q ss_pred ccccC-------CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRC-------DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~-------~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+-... ...+.+.|+.|+|+|||+++.-..
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 43211 234678999999999999776544
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.44 Score=44.63 Aligned_cols=97 Identities=21% Similarity=0.366 Sum_probs=64.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCC---EEEEecccCCcccHHHHHhcCc------chhhhhccccCCCCC-CCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPL---WVMNVVPIDAPDTLSIIFDRGL------IGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v---~v~~V~p~d~s~~l~~a~eRgl------ig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+.++||.+|-|.|-...++.+++. |+ |.+. ++.++.-++-|. +-....|-....+.| +.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEE--EecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 3457899999999998888877653 22 2221 134555555443 223334433356788 99999986
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...-.+.. ++..+.+-+-|.|||||.+-+..
T Consensus 176 DTy~e~yE---dl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 176 DTYSELYE---DLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred echhhHHH---HHHHHHHHHhhhcCCCceEEEec
Confidence 54434443 47778889999999999987753
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.061 Score=50.87 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=34.5
Q ss_pred CCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.||.|.+.+|++... +......++.-+-+.|||||.|++..
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699999999997643 33457789999999999999999963
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.4 Score=46.95 Aligned_cols=61 Identities=25% Similarity=0.441 Sum_probs=45.8
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE--------eC--------HH-HHHHHHHHHHcCCCeeee
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ--------DT--------LE-MINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~--------D~--------~~-~~~~i~~l~~~l~W~~~~ 289 (309)
++||+|...+++--- .++-++|.-|..+|+|||.+|=. |. .+ ..+.+..+++.+.|++..
T Consensus 258 ~~~d~VvTcfFIDTa---~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTA---HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeech---HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 369999877544322 24788999999999999998753 31 12 478899999999998765
Q ss_pred e
Q 021643 290 Y 290 (309)
Q Consensus 290 ~ 290 (309)
+
T Consensus 335 e 335 (369)
T KOG2798|consen 335 E 335 (369)
T ss_pred e
Confidence 5
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.65 Score=47.04 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc--ccHHHHHhcCcch-hhh-hccccCCCC--C-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLIG-MYH-DWCESFNTY--P-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--~~l~~a~eRglig-~~~-d~ce~~lpf--P-~sFDlVh~~~v~ 238 (309)
+..++||+=||.|+|+..|+++.-.|..+..+..+ .+-+.|...|+.. .+. .-.|.+.+= - ..||.|+..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD--- 369 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD--- 369 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC---
Confidence 34689999999999999999865444444443333 3444455555521 110 111222221 2 578998754
Q ss_pred ccccccCCHH-HHHHHHhhcccCCeEEEEEeCHHHHHH
Q 021643 239 SDVTQRCDIA-DVAVEMDRILRPGGYVLVQDTLEMINK 275 (309)
Q Consensus 239 ~~~~~~~~~~-~~L~Em~RVLRPGG~lii~D~~~~~~~ 275 (309)
+.+.+.. .++.++.+ ++|...++||=++..+.+
T Consensus 370 ---PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 370 ---PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLAR 403 (432)
T ss_pred ---CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHH
Confidence 4555555 55555554 678889999966664443
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.36 Score=47.44 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-c---cHHHHHhc-Ccc---hhhhhccccCCCCC--CCcce
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-D---TLSIIFDR-GLI---GMYHDWCESFNTYP--RTYDL 231 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~---~l~~a~eR-gli---g~~~d~ce~~lpfP--~sFDl 231 (309)
...+...||||.++.||=+.+|+..- ....-|+++|.+ + .+....+| |+. -..+|-......++ ..||.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcE
Confidence 33444799999999998666666531 111225777776 2 23322333 542 22223111011233 35999
Q ss_pred eEec------cccccccc------cCC-------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 232 LHSS------FLLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 232 Vh~~------~v~~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|... ++++.-++ ..+ -.++|....++|||||.++.+..
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9752 44421110 000 13578889999999999999854
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.23 Score=44.38 Aligned_cols=96 Identities=6% Similarity=-0.033 Sum_probs=52.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhh-hhccccCCC-C--C-CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMY-HDWCESFNT-Y--P-RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~-~d~ce~~lp-f--P-~sFDlVh~ 234 (309)
.+|||++||+|.++..++.++.. .++.+|.+ .+++.+.+ -++. ..+ .| ....+. + . ..||+|+.
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D-~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNS-ALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehh-HHHHHHHhhccCCCceEEEE
Confidence 57999999999999999998752 35555655 34443332 1221 111 11 111121 2 2 24788876
Q ss_pred ccccccccccCCHHHHHHHH--hhcccCCeEEEEEeCH
Q 021643 235 SFLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTL 270 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~ 270 (309)
.==+. ......++.-+ ..+|++||.+++....
T Consensus 128 DPPy~----~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFF----NGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCC----CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 42221 11123333322 4589999988886543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.13 Score=45.99 Aligned_cols=97 Identities=14% Similarity=0.229 Sum_probs=51.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch---hh-hhcccc--CCCCC-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG---MY-HDWCES--FNTYP-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig---~~-~d~ce~--~lpfP-~sFDlVh~~ 235 (309)
.++||+=||+|.++..-+++|.. .++-++.+ ..+..+.+. ++.. ++ .|.... .+... ..||+|++.
T Consensus 44 ~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 58999999999999887888742 34444554 233333221 2211 11 111000 11124 899999875
Q ss_pred cccccccccCC-HHHHHHHHh--hcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCD-IADVAVEMD--RILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~-~~~~L~Em~--RVLRPGG~lii~D~~ 270 (309)
-.+.. .. ...++.-+. .+|+++|.+++-...
T Consensus 122 ---PPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 122 ---PPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp ----STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred ---CCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 11211 11 255666665 899999999997544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.061 Score=42.64 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=32.1
Q ss_pred EEeCCcchHHHHHhhcC----C-CEEEEecccCCc-ccHHHHHhcCcchhh----hhccccCCCCC-CCcceeEeccccc
Q 021643 171 MDMNASYGGFAAALIDQ----P-LWVMNVVPIDAP-DTLSIIFDRGLIGMY----HDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 171 LD~GCG~G~faa~L~~~----~-v~v~~V~p~d~s-~~l~~a~eRglig~~----~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
|.+|+..|..+..+++. + ..+..|.+.... ...+.+.+.++...+ .+.-+....++ +.||+++...-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 57898899887777652 2 133445444421 122333333331111 11101112455 89999987642
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|- .......+..+.+.|+|||.+++-|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 21 1234567888999999999999876
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.29 Score=41.32 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhc
Q 021643 165 SSVRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~ 186 (309)
.+...|+|+|||-|.++..|+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHH
Confidence 4567999999999999999987
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.3 Score=40.37 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred eEEEeCCcchHHHHHhhcCCC--EEEEecccCC
Q 021643 169 NVMDMNASYGGFAAALIDQPL--WVMNVVPIDA 199 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v--~v~~V~p~d~ 199 (309)
++||+|||+|.++..++..+. .+..+.|...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 489999999999999887542 3555655543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=89.44 E-value=0.57 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=11.9
Q ss_pred CCCC-CCcceeEeccccccc
Q 021643 223 NTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~ 241 (309)
--|| +|.|++|++.++|.+
T Consensus 101 rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 101 RLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp --S-TT-EEEEEEES-TTB-
T ss_pred ccCCCCceEEEEEechhhhc
Confidence 3478 999999999999754
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.02 E-value=0.88 Score=46.57 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=60.3
Q ss_pred CCCeEEEeCCcch--HHHHHhhcCCCEEEEecccCCc-ccHHHHH--hcC-----c---ch-hhhhccccCCCCC--CCc
Q 021643 166 SVRNVMDMNASYG--GFAAALIDQPLWVMNVVPIDAP-DTLSIIF--DRG-----L---IG-MYHDWCESFNTYP--RTY 229 (309)
Q Consensus 166 ~~r~VLD~GCG~G--~faa~L~~~~v~v~~V~p~d~s-~~l~~a~--eRg-----l---ig-~~~d~ce~~lpfP--~sF 229 (309)
....++|+|.|.| ++++.+.-+. ..-.++-+|-+ .|+..+- -|+ - -. ..++ .++|-+ +.|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence 4467888887765 5666665443 11112233333 2322221 122 0 11 2333 478887 569
Q ss_pred ceeEeccccccccccCCHHHHHHHHhh-cccCCeEEEEEeC
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDT 269 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~ 269 (309)
|+|+|++.+++..+...-.++..+..| ..||||++++.+.
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 999999999998765555566666655 6899999999864
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.6 Score=44.22 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEeCCcchH---HHHHhhc-CCCEEEEecccCCc-ccH----HHHHhcCc---chhhhhcccc-CCCCCCC
Q 021643 162 INWSSVRNVMDMNASYGG---FAAALID-QPLWVMNVVPIDAP-DTL----SIIFDRGL---IGMYHDWCES-FNTYPRT 228 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~---faa~L~~-~~v~v~~V~p~d~s-~~l----~~a~eRgl---ig~~~d~ce~-~lpfP~s 228 (309)
+.+....+||||.|-.|| +.|+|.+ .|+ |.+.|.. +-+ +.+..-|. +...+|--|. .--||++
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~----I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~ 312 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGV----IFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGS 312 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCce----EEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcc
Confidence 556667899999999996 4455544 453 4555654 222 23333454 3333442110 0125679
Q ss_pred cceeE----ecc--ccccccccCC-------------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 229 YDLLH----SSF--LLSDVTQRCD-------------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 229 FDlVh----~~~--v~~~~~~~~~-------------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
||-|. |+. +.+--+..+. -.++|...-..+||||+++.+..
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 99986 554 4431111000 02456666778999999999864
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.92 Score=41.80 Aligned_cols=95 Identities=25% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHH-----HhcCc-chhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSII-----FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a-----~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+-++|||+|+|.|--+.+-+..+. ..++..|...-+..+ ...|. +...|. ..... ..||++.++.+|
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~----d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHA----DLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeec----cccCCCcceeEEEeecee
Confidence 347899999999965444333321 112233332111111 12232 222332 34446 999999999988
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
..- ..-.+++.=.+|+..-|-.+++-|.
T Consensus 153 y~~---~~a~~l~~~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 153 YNH---TEADRLIPWKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cCc---hHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 632 2233456644444445556666665
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.2 Score=42.14 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCCeEEEeCCcchH--HHHHhhcCCCEEEEecccCCc---ccHHHHHhcCc----------chhhhhcccc--CCCCCCC
Q 021643 166 SVRNVMDMNASYGG--FAAALIDQPLWVMNVVPIDAP---DTLSIIFDRGL----------IGMYHDWCES--FNTYPRT 228 (309)
Q Consensus 166 ~~r~VLD~GCG~G~--faa~L~~~~v~v~~V~p~d~s---~~l~~a~eRgl----------ig~~~d~ce~--~lpfP~s 228 (309)
...+||.+|+|+|- .++++.... +++-.|.+ ..++...+++. +....+|.++ ...++..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~----~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGA----EVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcc----eeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 45789999999983 344443221 22223333 23444433322 1122345442 1223333
Q ss_pred -cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 -YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 -FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||+|.++.++.+....+++ +.=|.-.|--+|.+++.-
T Consensus 162 ~~DlilasDvvy~~~~~e~L---v~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGL---VKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred cccEEEEeeeeecCCcchhH---HHHHHHHHhcCCeEEEEE
Confidence 9999999999876655554 444555677777655543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.71 Score=42.12 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=20.6
Q ss_pred CcceeEecc-ccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSF-LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~-v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-|+|+++. +|. .++...|.++.+-||||-++|-.
T Consensus 122 ~AdvVf~Nn~~F~-----~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 122 DADVVFVNNTCFD-----PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp C-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CCCEEEEeccccC-----HHHHHHHHHHHhcCCCCCEEEEC
Confidence 358888874 342 23566778888899998877653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.9 Score=42.23 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=53.3
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc--ccHHHHHhcCcch--hhhhccccCC---------------CCC-CC
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLIG--MYHDWCESFN---------------TYP-RT 228 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--~~l~~a~eRglig--~~~d~ce~~l---------------pfP-~s 228 (309)
+|||+-||+|.|+..|++..-.|+.|.....+ ++..-+...|+.. .+..-++... ... ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 278 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFK 278 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTT
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcC
Confidence 79999999999999999976555555433222 2333444445411 0100011110 112 25
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCeee
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~~~ 288 (309)
+|+|+.. |++.++...+.+.- .++.=.++++=.+. ....++.|.+ .|++.
T Consensus 279 ~d~vilD------PPR~G~~~~~~~~~--~~~~~ivYvSCnP~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 279 FDAVILD------PPRAGLDEKVIELI--KKLKRIVYVSCNPATLARDLKILKE--GYKLE 329 (352)
T ss_dssp ESEEEE---------TT-SCHHHHHHH--HHSSEEEEEES-HHHHHHHHHHHHC--CEEEE
T ss_pred CCEEEEc------CCCCCchHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHhh--cCEEE
Confidence 7777543 34444433333332 35666778874444 4455665544 46543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.2 Score=38.91 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=67.2
Q ss_pred EEEeCCcchHHHHHhhcCCCEEEEecccCCc-c----cHHHHHhcCcchhhhhcccc-CCCCC-C-CcceeEeccccccc
Q 021643 170 VMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D----TLSIIFDRGLIGMYHDWCES-FNTYP-R-TYDLLHSSFLLSDV 241 (309)
Q Consensus 170 VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~----~l~~a~eRglig~~~d~ce~-~lpfP-~-sFDlVh~~~v~~~~ 241 (309)
|.|+||--|.+..+|.+++. +-.+.+.|.. . ..+.+...|+.......+.. ..+++ + ..|.|+.+++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH-
Confidence 68999999999999999874 2234455554 2 33344445653322221221 33555 4 4788877654432
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
-+.++|.+....++..-.||+.-. .-...+++-+....|...-.
T Consensus 79 ----lI~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ----LIIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ----HHHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEE
T ss_pred ----HHHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEe
Confidence 256788888888887778888654 45678999999999976544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=86.07 E-value=0.48 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcccCCeEEEEE
Q 021643 247 IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~ 267 (309)
+...+.|+.|+|||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 577999999999999998886
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=85.94 E-value=0.32 Score=43.06 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.8
Q ss_pred CeEEEeCCcchHHHHHhhcCC
Q 021643 168 RNVMDMNASYGGFAAALIDQP 188 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~ 188 (309)
+.|+|+.||.||-+..++...
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT
T ss_pred CEEEEeccCcCHHHHHHHHhC
Confidence 379999999999999999875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.6 Score=46.69 Aligned_cols=79 Identities=10% Similarity=0.005 Sum_probs=39.7
Q ss_pred EecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEecccc-ccccccCCHHHHHHH---Hhhcc
Q 021643 193 NVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSSFLL-SDVTQRCDIADVAVE---MDRIL 258 (309)
Q Consensus 193 ~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~~v~-~~~~~~~~~~~~L~E---m~RVL 258 (309)
.+.++|.. .++..|.+. |+.. ...|+.+...+++ ++||+|+++==+ ..+.+..++..+..+ +.|.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~ 337 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ 337 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence 46777776 466555443 5421 1223332223444 689999998111 111111233334344 44444
Q ss_pred cCCeEEEEEeCHH
Q 021643 259 RPGGYVLVQDTLE 271 (309)
Q Consensus 259 RPGG~lii~D~~~ 271 (309)
.||+.+++-....
T Consensus 338 ~~g~~~~llt~~~ 350 (702)
T PRK11783 338 FGGWNAALFSSSP 350 (702)
T ss_pred CCCCeEEEEeCCH
Confidence 4998876665544
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.54 E-value=1.4 Score=40.00 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=55.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCC---CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP---RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP---~sFDlVh~~ 235 (309)
..++||+=||+|..+..-++++.- .++-++.+ .+.+++.+. ++ ...+..-....++-. ..||+|+..
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 358999999999999888888753 23334444 333333332 21 111221111233333 349999875
Q ss_pred cccccccccCCH--HHH--HHHHhhcccCCeEEEEEeCHH
Q 021643 236 FLLSDVTQRCDI--ADV--AVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 236 ~v~~~~~~~~~~--~~~--L~Em~RVLRPGG~lii~D~~~ 271 (309)
==|. .+-. +.. +.+-...|+|+|.+++-...+
T Consensus 122 PPy~----~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYA----KGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCc----cchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2222 1111 222 333678899999999976654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=85.49 E-value=0.29 Score=46.57 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=63.4
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c---cHHHHHhc-Cc--chhh-hhccccCCC-CC-CCcc
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D---TLSIIFDR-GL--IGMY-HDWCESFNT-YP-RTYD 230 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~---~l~~a~eR-gl--ig~~-~d~ce~~lp-fP-~sFD 230 (309)
......|||++||.||-+..|++. .. .|++.|.+ + .+....+| |+ +.+. +|... ..+ ++ ..||
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g---~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~-~~~~~~~~~fd 158 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKG---EIVANDISPKRLKRLKENLKRLGVFNVIVINADARK-LDPKKPESKFD 158 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTS---EEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHH-HHHHHHTTTEE
T ss_pred ccccccccccccCCCCceeeeeecccchh---HHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccc-ccccccccccc
Confidence 344567999999999977777652 22 35566665 3 22222223 44 1122 33211 122 23 4699
Q ss_pred eeEec------cccccccc------cCC-------HHHHHHHHhhcc----cCCeEEEEEeCH----HHHHHHHHHHHc
Q 021643 231 LLHSS------FLLSDVTQ------RCD-------IADVAVEMDRIL----RPGGYVLVQDTL----EMINKLKPVLHS 282 (309)
Q Consensus 231 lVh~~------~v~~~~~~------~~~-------~~~~L~Em~RVL----RPGG~lii~D~~----~~~~~i~~l~~~ 282 (309)
.|... +++..-++ ..+ -.++|....+.| ||||+++.+... +.-+.|+.++++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~ 237 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKR 237 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 99852 22322110 011 135788889999 999999999753 234455555544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.80 E-value=3 Score=39.85 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=62.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc--ccHHHHHhc-CcchhhhhccccCCCCC-----C
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP--DTLSIIFDR-GLIGMYHDWCESFNTYP-----R 227 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s--~~l~~a~eR-glig~~~d~ce~~lpfP-----~ 227 (309)
++-|+++ .+||=+|+++|..-....+- .-.|-.|.-..-+ +.+..|..| +++.++.| ++.|+. .
T Consensus 151 nihikpG--sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED---ArhP~KYRmlVg 225 (317)
T KOG1596|consen 151 NIHIKPG--SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED---ARHPAKYRMLVG 225 (317)
T ss_pred ceeecCC--ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc---CCCchheeeeee
Confidence 3335554 48999999999877776652 1122223222223 456667666 45666666 355544 3
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
-.|+|++ .+.+.++..-+.+-..--||+||-|+|+-
T Consensus 226 mVDvIFa-----Dvaqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 226 MVDVIFA-----DVAQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eEEEEec-----cCCCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 4566644 44444555557788888999999999974
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=81.57 E-value=0.31 Score=45.97 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=65.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CC--E-EE--EecccCCcccHHHHHhcCcchhhhhc-----cccCC-CCC-CCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PL--W-VM--NVVPIDAPDTLSIIFDRGLIGMYHDW-----CESFN-TYP-RTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v--~-v~--~V~p~d~s~~l~~a~eRglig~~~d~-----ce~~l-pfP-~sFD 230 (309)
.+.+|.|+.+..|+|+..|.++ +. - .- -|+++|...|.++ +|++....|. .|..+ -|. .--|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAd 117 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKAD 117 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCcc
Confidence 3788999999999999888763 10 0 00 1556666544443 2332111111 11112 344 5789
Q ss_pred eeEeccc-----ccccc---ccCCHHHHHHHHhhcccCCeEEEEE-----eCHHHHHHHHHHHHcC
Q 021643 231 LLHSSFL-----LSDVT---QRCDIADVAVEMDRILRPGGYVLVQ-----DTLEMINKLKPVLHSL 283 (309)
Q Consensus 231 lVh~~~v-----~~~~~---~~~~~~~~L~Em~RVLRPGG~lii~-----D~~~~~~~i~~l~~~l 283 (309)
+|+|... +|.+. +..-+..+|.=.-+||||||.|+-- |..-.-..++.+.+++
T Consensus 118 lVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 118 LVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred EEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHhhce
Confidence 9999743 22221 1112445666778999999999863 4444455666666544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.54 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.5 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.5 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.5 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.49 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.49 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.49 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.49 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.48 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.46 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.46 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.45 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.45 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.45 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.44 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.44 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.44 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.44 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.44 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.43 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.43 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.42 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.42 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.42 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.42 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.42 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.41 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.41 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.4 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.4 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.4 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.4 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.4 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.4 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.39 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.39 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.39 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.39 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.39 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.39 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.39 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.39 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.38 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.37 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.36 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.36 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.36 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.35 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.35 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.35 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.34 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.34 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.34 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.34 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.34 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.33 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.32 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.32 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.32 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.32 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.32 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.3 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.3 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.29 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.28 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.28 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.28 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.27 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.27 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.27 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.27 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.26 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.26 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.26 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.26 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.25 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.25 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.22 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.21 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.2 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.19 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.19 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.18 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.18 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.17 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.17 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.17 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.16 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.16 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.15 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.15 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.15 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.15 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.14 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.14 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.14 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.13 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.13 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.13 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.13 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.13 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.12 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.11 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.11 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.1 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.1 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.09 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.08 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.08 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.08 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.07 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.07 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.07 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.06 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.06 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.05 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.05 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.04 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.03 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.03 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.03 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.02 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.02 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.01 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.01 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.01 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.01 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.01 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.0 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.99 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.99 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.99 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.99 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.99 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.98 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.97 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.96 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.95 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.95 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.94 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.94 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.94 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.94 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.93 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.93 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.93 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.92 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.91 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.9 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.9 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.9 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.89 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.88 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.88 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.88 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.87 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.86 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.86 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.85 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.85 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.84 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.84 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.84 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.84 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.84 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.84 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.83 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.81 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.81 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.81 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.81 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.8 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.79 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.79 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.78 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.77 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.76 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.75 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.75 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.74 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.74 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.73 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.73 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.71 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.71 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.71 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.71 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.7 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.7 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.7 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.69 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.69 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.68 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.68 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.66 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.66 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.64 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.63 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.62 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.61 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.61 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.6 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.59 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.54 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.5 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.49 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.49 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.47 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.45 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.43 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.42 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.4 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.39 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.38 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.36 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.36 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.35 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.35 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.34 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.32 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.32 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.29 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.2 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.19 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.16 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.15 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.15 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.13 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.12 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.1 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.05 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.04 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.01 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.98 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.81 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.57 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.52 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.47 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.4 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.37 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.35 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.34 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.32 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.23 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.23 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.09 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.07 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.03 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.96 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.89 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.82 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.77 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 96.73 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.71 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.7 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 96.69 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 96.6 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.52 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 96.26 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.0 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 95.88 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 95.87 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 95.72 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.62 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 95.38 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 95.23 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 95.13 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 95.05 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 94.59 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.72 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.2 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 93.17 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 92.91 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 92.59 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 91.3 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 90.77 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.12 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 86.0 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 84.6 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 83.55 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 83.12 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 81.61 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 81.49 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-15 Score=137.72 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=72.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccccC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~ 245 (309)
.+|||+|||+|.++..|++++. +|+++|.+ .|++.+.++.-+...+.-.| .+||| ++||+|+|..++||..
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e-~~~~~~~sfD~v~~~~~~h~~~--- 113 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAE-DTGLPPASVDVAIAAQAMHWFD--- 113 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTT-CCCCCSSCEEEEEECSCCTTCC---
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhh-hhcccCCcccEEEEeeehhHhh---
Confidence 5899999999999999999875 45677777 68877765432221221122 58999 9999999999996653
Q ss_pred CHHHHHHHHhhcccCCeEEEEEe
Q 021643 246 DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+.++.|+.|||||||.|++.+
T Consensus 114 -~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 114 -LDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHcCCCCEEEEEE
Confidence 6789999999999999998864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=127.45 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCCCCcceeEecc-cccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSSF-LLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP~sFDlVh~~~-v~~~~~ 242 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++.. .-...|.. .++++++||+|+|.. +++|+.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR--DFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT--TCCCSCCEEEEEECTTGGGGSC
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH--HCCccCCcCEEEEcCchhhhcC
Confidence 46899999999999999999864 46777887 68888888742 11222321 355579999999998 999987
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+..+...+|.++.|+|||||++++.
T Consensus 126 ~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5556788999999999999999995
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=128.29 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
+..+|||+|||+|.++..|++... .++++|.+ .+++.+.++ |+ .-...|. ..+||| ++||+|+++.
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~--~~l~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA--EQMPFTDERFHIVTCRI 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC---CCCSCTTCEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH--HhCCCCCCCEEEEEEhh
Confidence 346899999999999999998754 56777877 688777665 32 1122332 247899 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|+.+ ...+|.|+.|+|||||++++.+
T Consensus 112 ~l~~~~d---~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFPN---PASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 9999864 6889999999999999999975
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=117.65 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=97.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
..+|||+|||+|.++..|++.. -.+.++|.+ .+++.+.++.- +... +.. ++++ ++||+|+++.+++|+.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~---~~d-~~~~~~~~D~v~~~~~l~~~~- 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITL---SDP-KEIPDNSVDFILFANSFHDMD- 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEE---SSG-GGSCTTCEEEEEEESCSTTCS-
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEE---eCC-CCCCCCceEEEEEccchhccc-
Confidence 4689999999999999999875 277888887 68888888722 1111 112 7888 9999999999999885
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCHH-------------HHHHHHHHHHcCCCeeeee-----cceEEEEEeCcCCCC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTLE-------------MINKLKPVLHSLQWSTNIY-----HDQFLVGKKGFWRPT 305 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~~-------------~~~~i~~l~~~l~W~~~~~-----~e~~li~~K~~w~~~ 305 (309)
+...+|.++.|+|||||++++.+... ..++++++++ .|+.... ..-.+++.|+-=++.
T Consensus 90 --~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (170)
T 3i9f_A 90 --DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGLVLKRKTSEGH 165 (170)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEEEEEECCCCSC
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEEEEecCCCCcc
Confidence 47889999999999999999986321 2456777776 7765433 355777777766555
Q ss_pred CCC
Q 021643 306 GGE 308 (309)
Q Consensus 306 ~~~ 308 (309)
++|
T Consensus 166 ~~~ 168 (170)
T 3i9f_A 166 HHH 168 (170)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=120.51 Aligned_cols=93 Identities=23% Similarity=0.235 Sum_probs=73.7
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+|||+|||+|.++..|++.+ ...++++|.+ .+++.+.++ |+ + -...|. ..++++ ++||+|+++.++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV--HNIPIEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT--TBCSSCTTCEEEEEEESCG
T ss_pred EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH--HHCCCCcccccEEEECchH
Confidence 89999999999999998862 2467778887 577777766 32 1 122232 247888 999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|+. +...+|.++.|+|||||++++.+
T Consensus 122 ~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 122 FFWE---DVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence 9985 47889999999999999999985
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.50 E-value=6.6e-14 Score=122.16 Aligned_cols=130 Identities=14% Similarity=0.202 Sum_probs=93.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------------CcchhhhhccccCCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------------GLIGMYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------------glig~~~d~ce~~lpfP-~sFDlV 232 (309)
..+|||+|||+|.++..|++.+.. ..++++|.+ .+++.+.++ .+.-...|. ...+++ ++||+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~V 106 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL--VYRDKRFSGYDAA 106 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS--SSCCGGGTTCSEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc--cccccccCCCCEE
Confidence 468999999999999999986421 256777777 578887765 221112232 246676 899999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHH----------------------HHHHH----HHHHcCCCe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM----------------------INKLK----PVLHSLQWS 286 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~----------------------~~~i~----~l~~~l~W~ 286 (309)
+|+.+++|+.+ .+...+|.++.|+|||||.+++....+. .++++ .++.+-.++
T Consensus 107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 107 TVIEVIEHLDE-NRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYS 185 (219)
T ss_dssp EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEE
T ss_pred EEHHHHHhCCH-HHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcE
Confidence 99999999864 2357899999999999998877643321 22333 777777777
Q ss_pred eeee-----------cceEEEEEeC
Q 021643 287 TNIY-----------HDQFLVGKKG 300 (309)
Q Consensus 287 ~~~~-----------~e~~li~~K~ 300 (309)
+... ..+++|++|+
T Consensus 186 v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 186 VRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEEecCCccccCCCCeEEEEEecc
Confidence 6654 5689999986
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-14 Score=119.41 Aligned_cols=116 Identities=21% Similarity=0.292 Sum_probs=83.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++.+. +++++|.+ .+++.+.++ ++ .-...|.. .++++++||+|+++.++
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~--~~~~~~~~D~v~~~~~l 107 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLN--NLTFDRQYDFILSTVVL 107 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGG--GCCCCCCEEEEEEESCG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchh--hCCCCCCceEEEEcchh
Confidence 45899999999999999998864 56667776 566666553 32 11222321 24557899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH--------------HHHHHHHHHHHcCCCeeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~~~~~i~~l~~~l~W~~~~~ 290 (309)
+|+. ..+...+|.++.|+|||||++++.+.. -..+++++++.. |+....
T Consensus 108 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 108 MFLE-AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp GGSC-GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhCC-HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 9886 345788999999999999998876421 024566777766 776543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-14 Score=126.94 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++ +.....|..+...||+ ++||+|+|..+++|+.+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~-~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~- 116 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK-FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP- 116 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT-SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG-
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh-cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc-
Confidence 46899999999999999998764 45677887 688888887 3111222111123888 99999999999999873
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++..+|.++.|+|||||++++...
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESP 141 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3578899999999999999999853
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=124.40 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=73.5
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC---cchhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---LIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg---lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
.+|||+|||+|.++..|++.+. +++++|.+ .+++.+.++. +.-...|. + .+ ++ ++||+|++..+++|+.
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~-~-~~-~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRF-E-DA-QLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCG-G-GC-CCSSCEEEEEEESCGGGCS
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccH-H-Hc-CcCCcccEEEEhhHHHhhc
Confidence 5799999999999999998764 46677777 6888888773 22222232 2 23 45 9999999999999986
Q ss_pred ccCCHHHHHHHHh-hcccCCeEEEEEeC
Q 021643 243 QRCDIADVAVEMD-RILRPGGYVLVQDT 269 (309)
Q Consensus 243 ~~~~~~~~L~Em~-RVLRPGG~lii~D~ 269 (309)
+ ...+|.|+. |+|||||++++.+.
T Consensus 118 ~---~~~~l~~~~~~~LkpgG~l~i~~~ 142 (250)
T 2p7i_A 118 D---PVALLKRINDDWLAEGGRLFLVCP 142 (250)
T ss_dssp S---HHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred C---HHHHHHHHHHHhcCCCCEEEEEcC
Confidence 4 678999999 99999999999863
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=122.25 Aligned_cols=118 Identities=10% Similarity=0.078 Sum_probs=91.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++.. .-...|.. .++++ ++||+|++..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTIT--DLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGG--GGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccc--ccccCCCCeEEEEehhhHhcCC
Confidence 35799999999999999999864 46677877 68888888742 11222321 36788 9999999999999986
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEeCH----------------HHHHHHHHHHHcCCCeeeee
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~~~ 290 (309)
..+...+|.++.|+|||||++++.+.. ...++++.+++...++....
T Consensus 117 -~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 117 -PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp -TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred -HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 346889999999999999999998632 12677888888888876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=120.06 Aligned_cols=96 Identities=17% Similarity=0.236 Sum_probs=74.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----C--cchhhhhccccCCCCCCCcceeEecc-cc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G--LIGMYHDWCESFNTYPRTYDLLHSSF-LL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----g--lig~~~d~ce~~lpfP~sFDlVh~~~-v~ 238 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++ + +.-...|.. .++++++||+|+++. ++
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~~fD~v~~~~~~l 112 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS--NLNINRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG--GCCCSCCEEEEEECTTGG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc--cCCccCCceEEEEcCccc
Confidence 46899999999999999998764 46777887 677777665 2 211222321 356668999999998 99
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+.+..+...+|.++.|+|||||++++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99854456789999999999999999984
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-14 Score=131.74 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=74.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|+++- .....|+++|.+ .|++.|.++ +....+.-.+.....+| ..||+|+++.+++
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~l~ 150 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 150 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeeeee
Confidence 3589999999999999998641 112356778888 699988876 32111111112234566 7899999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+++ .+...+|.|++|+|||||.|+++|.
T Consensus 151 ~~~~-~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLEP-SERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCc-hhHhHHHHHHHHHcCCCcEEEEEec
Confidence 8864 3456799999999999999999863
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-14 Score=126.01 Aligned_cols=124 Identities=12% Similarity=0.021 Sum_probs=85.2
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c-----------------c-hhh
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L-----------------I-GMY 215 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l-----------------i-g~~ 215 (309)
|+..+.+.. ..+|||+|||+|.++.+|++++. .|+++|.+ .|++.|.++. . + -..
T Consensus 14 ~~~~l~~~~--~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 14 YWSSLNVVP--GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHCCCT--TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHhcccCC--CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 455454433 35899999999999999998764 57788888 6899888761 1 1 111
Q ss_pred hhccccCCCCC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE-E-eCH----------HHHHHHHHHHH
Q 021643 216 HDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV-Q-DTL----------EMINKLKPVLH 281 (309)
Q Consensus 216 ~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii-~-D~~----------~~~~~i~~l~~ 281 (309)
.|. ..+|++ ++||+|++..+|+|++. .+...++.|+.|+|||||++++ . +.. -..++++.+..
T Consensus 89 ~d~--~~l~~~~~~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~ 165 (203)
T 1pjz_A 89 GDF--FALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMS 165 (203)
T ss_dssp ECC--SSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSC
T ss_pred Ccc--ccCCcccCCCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhc
Confidence 222 135554 69999999999998863 3456799999999999998333 2 211 02456777766
Q ss_pred cCCCeee
Q 021643 282 SLQWSTN 288 (309)
Q Consensus 282 ~l~W~~~ 288 (309)
. .|+..
T Consensus 166 ~-gf~i~ 171 (203)
T 1pjz_A 166 G-NWEVT 171 (203)
T ss_dssp S-SEEEE
T ss_pred C-CcEEE
Confidence 6 66643
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.2e-14 Score=121.47 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
+..+|||+|||+|.++..|++.+ ..++.+|.+ .+++.+.++.......|..+...+++ ++||+|+++.+++|+.+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~ 108 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD 108 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC
Confidence 45689999999999999999885 356777877 68888877653222223222247888 99999999999999864
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
...+|.++.|+|||||++++.+.
T Consensus 109 ---~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 109 ---PWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ---HHHHHHHTGGGEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHHHcCCCCEEEEEeC
Confidence 67899999999999999999863
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-14 Score=121.95 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=92.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++...-...++++|.+ .+++.+.++ |+ .-...|. ..++++ ++||+|+++.+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~ 115 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE--NKIPLPDNTVDFIFMAFT 115 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT--TBCSSCSSCEEEEEEESC
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc--ccCCCCCCCeeEEEeehh
Confidence 4589999999999999998753000145666776 577776655 22 1122232 246788 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH-------------HHHHHHHHHHHcCCCeeeee-----cceEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------------EMINKLKPVLHSLQWSTNIY-----HDQFLVGKK 299 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------------~~~~~i~~l~~~l~W~~~~~-----~e~~li~~K 299 (309)
++|+. +...+|.++.|+|||||++++.+.. ...+++..+++.-.++.... ...+++++|
T Consensus 116 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 116 FHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp GGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred hhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99885 4688999999999999999998621 12577888888888885433 445667777
Q ss_pred C
Q 021643 300 G 300 (309)
Q Consensus 300 ~ 300 (309)
+
T Consensus 193 ~ 193 (219)
T 3dh0_A 193 V 193 (219)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-14 Score=136.14 Aligned_cols=136 Identities=7% Similarity=0.086 Sum_probs=99.1
Q ss_pred ccchhHHHHHHHHHH----hccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchh---
Q 021643 143 KDTTHWYALVSDVYV----GGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGM--- 214 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~----~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~--- 214 (309)
..+..|...... +. +.+.+. +..+|||+|||+|.++..|++.+. .++++|.+ ++++.+.++|+...
T Consensus 83 ~~~~~~~~~~~~-~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~ 156 (416)
T 4e2x_A 83 SGSSVMREHFAM-LARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF 156 (416)
T ss_dssp GGCHHHHHHHHH-HHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred cCCHHHHHHHHH-HHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence 444556655443 33 233333 346899999999999999999875 56778888 69999999976221
Q ss_pred h-hhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH--------------------H
Q 021643 215 Y-HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE--------------------M 272 (309)
Q Consensus 215 ~-~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~--------------------~ 272 (309)
+ .+.. ..+|++ ++||+|++..+|+|++ ++..+|.|+.|+|||||++++.+... .
T Consensus 157 ~~~~~~-~~l~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 157 FEKATA-DDVRRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp CSHHHH-HHHHHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred echhhH-hhcccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 1 1111 246788 9999999999999996 47889999999999999999975320 1
Q ss_pred HHHHHHHHHcCCCeee
Q 021643 273 INKLKPVLHSLQWSTN 288 (309)
Q Consensus 273 ~~~i~~l~~~l~W~~~ 288 (309)
.+.++.++++-.++..
T Consensus 233 ~~~l~~ll~~aGf~~~ 248 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELV 248 (416)
T ss_dssp HHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 3567777777777654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-13 Score=118.69 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=74.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC---cchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg---lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. +.-...|.. .++++++||+|+++.+++|+.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~--~~~~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFL--SFEVPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSS--SCCCCSCCSEEEEESCGGGSC
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChh--hcCCCCCeEEEEECcchhcCC
Confidence 46899999999999999998864 56777887 6888888773 222222321 356669999999999999987
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+. +...+|.++.|+|||||++++.+
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 121 DD-EKNVAIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp HH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 52 22349999999999999999986
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-13 Score=122.70 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=78.2
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--c-hhhhhccccCCCCC-
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--I-GMYHDWCESFNTYP- 226 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--i-g~~~d~ce~~lpfP- 226 (309)
+++.+.+.. ..+|||+|||+|.++..|++... .++++|.+ .+++.+.++ |+ + -...|. + .+|++
T Consensus 13 ~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~-~~~~~~ 85 (239)
T 1xxl_A 13 MIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-E-SLPFPD 85 (239)
T ss_dssp HHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-T-BCCSCT
T ss_pred HHHHhCcCC--CCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-c-cCCCCC
Confidence 444554443 46899999999999999998764 56677776 577776654 32 1 122232 2 47898
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|+|+.+++|+. +...+|.|+.|+|||||++++.+
T Consensus 86 ~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp TCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999999999886 47889999999999999999975
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=122.31 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEeccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
+..+|||+|||+|.++..|++.+.. .++++|.+ .+++.+.++.- .-...|. ..+|++ ++||+|+|+.+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI--EDIAIEPDAYNVVLSSLALH 119 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG--GGCCCCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch--hhCCCCCCCeEEEEEchhhh
Confidence 4568999999999999999987642 56777887 68888887742 1122232 247888 9999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+. ++..+|.++.|+|||||.+++...
T Consensus 120 ~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 120 YIA---SFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhh---hHHHHHHHHHHHcCCCcEEEEEeC
Confidence 885 478899999999999999999753
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=123.55 Aligned_cols=102 Identities=25% Similarity=0.321 Sum_probs=76.5
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP 226 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP 226 (309)
++.+.+. +..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++ |+. -...|. ..+||+
T Consensus 54 ~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~ 126 (273)
T 3bus_A 54 IALLDVR--SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADA--MDLPFE 126 (273)
T ss_dssp HHHSCCC--TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSCCSC
T ss_pred HHhcCCC--CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc--ccCCCC
Confidence 3344443 3468999999999999999874 43 56677776 577776654 431 112232 247898
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|++..+++|+.+ ...+|.|+.|+|||||++++.+
T Consensus 127 ~~~fD~v~~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 127 DASFDAVWALESLHHMPD---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp TTCEEEEEEESCTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCccEEEEechhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999999999864 6889999999999999999986
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=117.44 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=73.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhhhhccccCCCCC-CCcceeEeccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
+..+|||+|||+|.++..| +. ..++++|.+ .+++.+.++. +.-...|. ..+|++ ++||+|++..+++|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~l~~~ 108 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWG--EALPFPGESFDVVLLFTTLEFV 108 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCT--TSCCSCSSCEEEEEEESCTTTC
T ss_pred CCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEccc--ccCCCCCCcEEEEEEcChhhhc
Confidence 3468999999999999988 32 146677877 6888888873 22222232 247888 899999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
. +...+|.|+.|+|||||.+++.+.
T Consensus 109 ~---~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 109 E---DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---CHHHHHHHHHHHcCCCCEEEEEec
Confidence 6 478899999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-14 Score=123.64 Aligned_cols=97 Identities=19% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCc----c-hhhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGL----I-GMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgl----i-g~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++.- + -...|.. .+|++ ++||+|++..+
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~--~~~~~~~~fD~v~~~~~ 129 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL--TKEFPENNFDLIYSRDA 129 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT--TCCCCTTCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc--cCCCCCCcEEEEeHHHH
Confidence 3468999999999999999886 43 56777877 68888888752 1 1223321 36888 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|++. .+...+|.++.|+|||||++++.+
T Consensus 130 l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 130 ILALSL-ENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhcCh-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999842 347889999999999999999986
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-13 Score=120.44 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=86.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++.. .-...|. ..++++ ++||+|++..+++|
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDL--SSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBT--TBCSSCTTCEEEEEEESCTTS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcch--hcCCCCCCCccEEEEcChHhh
Confidence 35899999999999999999865 46677777 68888888742 1122232 147888 99999999999999
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeCH----------------------HHHHHHHHHHHcCCCeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------------EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~l~~~l~W~~~ 288 (309)
+. +...+|.++.|+|||||++++.+.. .....++.+++.-.++..
T Consensus 129 ~~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 129 TE---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp SS---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred cc---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 85 4678999999999999999998621 112457777777777654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=124.70 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---c-hhhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---I-GMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---i-g~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++ |+ + -...|. ..+||+ ++||+|++.
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSCSSCTTCEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc--ccCCCCCCCEeEEEec
Confidence 468999999999999999885 53 56677777 577777654 33 1 122232 247898 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+++|+.+ ...+|.|+.|+|||||++++.+
T Consensus 158 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHSPD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 99999875 7889999999999999999986
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-13 Score=125.30 Aligned_cols=99 Identities=14% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cch-------hhhhccccCCC---CC-CCcc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIG-------MYHDWCESFNT---YP-RTYD 230 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig-------~~~d~ce~~lp---fP-~sFD 230 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. ... ...++. .++ ++ ++||
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~fD 132 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL--TLDKDVPAGDGFD 132 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG--GHHHHSCCTTCEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh--hCccccccCCCeE
Confidence 46899999999999999999875 67778887 6888887642 100 111221 244 77 9999
Q ss_pred eeEec-cccccccc----cCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 231 LLHSS-FLLSDVTQ----RCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 231 lVh~~-~v~~~~~~----~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+|+|. .+++|+.+ ..+...+|.++.|+|||||++++....
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99998 89999875 344788999999999999999998643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=6e-14 Score=124.36 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=87.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c-hhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I-GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i-g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+..+|||+|||+|.++..|++.+. ..++++|.+ .+++.+.++.- + -...|. + .++++ ++||+|+++.++
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~-~~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASM-E-TATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG-G-GCCCCSSCEEEEEEESCG
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccH-H-HCCCCCCCeEEEEEcchh
Confidence 457899999999999999987642 246677776 68888887642 1 122232 1 36888 999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH----------------HHHHHHHHHHHcCCCeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------EMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------~~~~~i~~l~~~l~W~~~ 288 (309)
+|+++ .+...+|.++.|+|||||++++.+.. ...+.+++++++-.++..
T Consensus 169 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 169 IYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp GGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEE
Confidence 99864 34788999999999999999998741 023567777766666543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=127.64 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=92.7
Q ss_pred CCeEEEeCCcchHHHHHhh--cCCCEEEEecccCCc-ccHHHHHhcC----cc---h-hhhhccccCCCCCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALI--DQPLWVMNVVPIDAP-DTLSIIFDRG----LI---G-MYHDWCESFNTYPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~--~~~v~v~~V~p~d~s-~~l~~a~eRg----li---g-~~~d~ce~~lpfP~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+ ..+. ..++++|.+ .+++.+.++. +. . ...|.. .+|++++||+|+++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~v~~~ 194 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW--KLDTREGYDLLTSN 194 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG--GCCCCSCEEEEECC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh--cCCccCCeEEEEEC
Confidence 4689999999999999995 2221 256777776 5777777653 21 1 122322 36777999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---------------------------------------HHHHHH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---------------------------------------EMINKL 276 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---------------------------------------~~~~~i 276 (309)
.+++|+++......++.++.|+|||||++++.+.. ...+++
T Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 99999876544456899999999999999998721 125677
Q ss_pred HHHHHcCCCeeeee------cceEEEEEeC
Q 021643 277 KPVLHSLQWSTNIY------HDQFLVGKKG 300 (309)
Q Consensus 277 ~~l~~~l~W~~~~~------~e~~li~~K~ 300 (309)
.++++.-.++.... .-..++++|+
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 78888888876433 2346777775
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=125.69 Aligned_cols=98 Identities=12% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCeEEEeCCcchHHHHH----hhcC--CCEEEEecccCCc-ccHHHHHhc-----Ccchh-h--hh-ccccC-----CCC
Q 021643 167 VRNVMDMNASYGGFAAA----LIDQ--PLWVMNVVPIDAP-DTLSIIFDR-----GLIGM-Y--HD-WCESF-----NTY 225 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~----L~~~--~v~v~~V~p~d~s-~~l~~a~eR-----glig~-~--~d-~ce~~-----lpf 225 (309)
..+|||+|||+|.++.. +..+ ++. +.++.+|.+ +|++.+.++ ++..+ + .+ -.+.. .+|
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45899999999986543 3332 332 244788888 689888775 22110 0 00 01111 147
Q ss_pred C-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 226 P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 226 P-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+ ++||+|+|+.+++|+++ +..+|.|+.|+|||||++++..
T Consensus 132 ~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 7 99999999999999874 7889999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=123.40 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
+..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. +.-...|. + .+|++++||+|+++.+++|+.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~-~~~~~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-R-NFRVDKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-T-TCCCSSCEEEEEEESCGGGCS
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-h-hCCcCCCcCEEEEcchhhhCc
Confidence 346899999999999999998654 56677777 6888888763 22122232 2 366779999999999999886
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...+|.|+.|+|||||++++..
T Consensus 132 ---d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 132 ---EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 47889999999999999999975
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-13 Score=115.37 Aligned_cols=114 Identities=22% Similarity=0.308 Sum_probs=85.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc----hhhhhccccCCCCC--CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI----GMYHDWCESFNTYP--RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli----g~~~d~ce~~lpfP--~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.+++.. +...+.. ..+++ .+||+|+++.+++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLA--EAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHH--TTCSCCCCCEEEEEEESCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhc--ccccccCCCccEEEECchhh
Confidence 37899999999999999999864 56777887 689999888542 2222211 23544 5699999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCHH--------------------------------HHHHHHHHHHcCCCee
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTLE--------------------------------MINKLKPVLHSLQWST 287 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~--------------------------------~~~~i~~l~~~l~W~~ 287 (309)
. .+...+|.++.|+|||||++++.+... ..+.+.++++.-.++.
T Consensus 128 -~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 203 (227)
T 3e8s_A 128 -H---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRL 203 (227)
T ss_dssp -S---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEE
T ss_pred -h---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeE
Confidence 3 246789999999999999999986310 3577888888877776
Q ss_pred ee
Q 021643 288 NI 289 (309)
Q Consensus 288 ~~ 289 (309)
.-
T Consensus 204 ~~ 205 (227)
T 3e8s_A 204 VS 205 (227)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=118.72 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=77.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----ch-hhhhccccCCCCCCCcceeEecccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
.+..+|||+|||+|.++..|++.+ ..++++|.+ .+++.+.++.. +. ...|. + .++.+++||+|+|+.++
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~-~-~~~~~~~fD~v~~~~~l 124 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDI-L-QFSTAELFDLIVVAEVL 124 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT-T-TCCCSCCEEEEEEESCG
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcch-h-hCCCCCCccEEEEccHH
Confidence 345689999999999999999874 367888887 68888887642 11 12232 1 23423999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.+...+..+|.++.|+|||||++++.+.
T Consensus 125 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 125 YYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9998655567889999999999999999763
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=121.29 Aligned_cols=102 Identities=14% Similarity=0.230 Sum_probs=75.4
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP 226 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP 226 (309)
++.+.+.. ..+|||+|||+|.++..|++ .+. .++++|.+ .+++.+.++ |+. -...|. ..+|
T Consensus 57 ~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~~~ 127 (287)
T 1kpg_A 57 LGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW----EQFD 127 (287)
T ss_dssp HTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG----GGCC
T ss_pred HHHcCCCC--cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh----hhCC
Confidence 34444433 46899999999999999984 454 56777777 577777765 321 112232 2345
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|++..+++|+.+ .+...+|.++.|+|||||.+++.+
T Consensus 128 ~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp CCCSEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCeeEEEEeCchhhcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999853 457889999999999999999976
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=118.27 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=88.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc-CcchhhhhccccCCCCCCCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR-GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR-glig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
..+|||+|||+|.++..|++.+. .+.++|.+ .+++.+.++ +......+.. .++.+++||+|+|+.+++|+..
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~--~~~~~~~fD~v~~~~~l~~~~~- 117 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH--QLDAIDAYDAVWAHACLLHVPR- 117 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG--GCCCCSCEEEEEECSCGGGSCH-
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec--cCCCCCcEEEEEecCchhhcCH-
Confidence 46899999999999999998864 56677777 688888877 4322223321 3553399999999999999862
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeCH---------------HHHHHHHHHHHcCC-Ceeee
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDTL---------------EMINKLKPVLHSLQ-WSTNI 289 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~l~~~l~-W~~~~ 289 (309)
.++..+|.++.|+|||||++++.... ...+.++.+++.-. ++...
T Consensus 118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEE
Confidence 34788999999999999999997431 13567788887777 76543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-13 Score=120.51 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------cchhhhhccccCCCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------LIGMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------lig~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++- +.-...|. ..+|++ ++||+|+++.+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA--RAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT--TSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc--ccCCCCCCCeeEEEECCc
Confidence 346899999999999999998764 56777777 6888887762 11122232 247888 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++|++ +...+|.|+.|+|||||++++.
T Consensus 114 l~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 99886 3688999999999999999886
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-13 Score=121.74 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=71.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCCCCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++ |+. . ...|. + .++++++||+|+|..
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~fD~V~~~~ 111 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-A-GYVANEKCDVAACVG 111 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-T-TCCCSSCEEEEEEES
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh-H-hCCcCCCCCEEEECC
Confidence 468999999999999999874 43 45677776 577776654 431 1 12232 1 345569999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|+.+ ...+|.|+.|+|||||++++.+
T Consensus 112 ~~~~~~~---~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 112 ATWIAGG---FAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp CGGGTSS---SHHHHHHHTTSEEEEEEEEEEE
T ss_pred ChHhcCC---HHHHHHHHHHHcCCCeEEEEec
Confidence 9998863 5789999999999999999986
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=117.55 Aligned_cols=96 Identities=22% Similarity=0.254 Sum_probs=76.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+.. .++++|.+ .+++.+.++.. .-...|.. .++++ ++||+|+++.+++|
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~--~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD--KLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG--GCCCCTTCEEEEEEESCGGG
T ss_pred CCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh--hccCCCCCceEEEEeccccc
Confidence 468999999999999999987641 46677777 68888887752 11222321 36788 99999999999998
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+. +...+|.++.|+|||||++++.+.
T Consensus 120 ~~---~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 120 VE---DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc---hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 85 478899999999999999999764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-13 Score=117.65 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch---hhhhccccCCCCC-CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG---MYHDWCESFNTYP-RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig---~~~d~ce~~lpfP-~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++|... ...|. + .+ ++ ++||+|+++.+++|+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~-~-~~-~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDL-F-DW-TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCT-T-SC-CCSSCEEEEEEESCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEeccc-c-cC-CCCCceeEEEEechhhcC
Confidence 35899999999999999998754 56677777 6888888877411 12232 1 23 67 999999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++ .....+|.++.|+|||||.+++.+.
T Consensus 121 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 121 PD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 74 2357899999999999999999864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=121.03 Aligned_cols=94 Identities=19% Similarity=0.274 Sum_probs=73.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.... .++++|.+ .+++.+.++ |+. -...|. ..+|++ ++||+|+|+.
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM--DNLPFQNEELDLIWSEG 122 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSCSSCTTCEEEEEEES
T ss_pred CCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh--hhCCCCCCCEEEEEecC
Confidence 458999999999999999886421 56777776 577766654 331 122332 257888 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++|+ +...+|.++.|+|||||++++.+
T Consensus 123 ~l~~~----~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 123 AIYNI----GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp CSCCC----CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hHhhc----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 99987 36889999999999999999987
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=122.43 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=73.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-cchhhhhccccCCCCC-CCcceeEecccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-LIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT 242 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~ 242 (309)
+..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. +.-...|. + .+||+ ++||+|+|+.+++|+.
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~-~-~~~~~~~~fD~v~~~~~l~~~~ 108 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYA-E-NLALPDKSVDGVISILAIHHFS 108 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCT-T-SCCSCTTCBSEEEEESCGGGCS
T ss_pred CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECch-h-hCCCCCCCEeEEEEcchHhhcc
Confidence 346899999999999999998664 56677777 5777666553 21122332 2 47898 9999999999999985
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...+|.|+.|+|| ||++++.+
T Consensus 109 ---~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 ---HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp ---SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred ---CHHHHHHHHHHHhC-CcEEEEEE
Confidence 47889999999999 99888865
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-13 Score=119.66 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=73.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhcCc-----chhhhhccccCCCCCCCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eRgl-----ig~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
+..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++-- .-...|. ..++++++||+|+++.+
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~--~~~~~~~~fD~v~~~~~ 118 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY--SKYDFEEKYDMVVSALS 118 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCT--TTCCCCSCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCch--hccCCCCCceEEEEeCc
Confidence 3478999999999999999885 33 56677776 68888887632 1122232 13566699999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|+.+ .+...+|.|+.|+|||||++++.+
T Consensus 119 l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 119 IHHLED-EDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999864 233469999999999999999987
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=123.05 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=74.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---c-hhhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---I-GMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---i-g~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++ |+ + -...|. +...+++ ++||+|+|+.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA-QDVASHLETPVDLILFHA 144 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG-GGTGGGCSSCEEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH-HHhhhhcCCCceEEEECc
Confidence 35899999999999999998864 46667776 577777765 33 1 112232 2223377 9999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++|+.+ ...+|.|+.|+|||||++++.+.
T Consensus 145 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 145 VLEWVAD---PRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp CGGGCSC---HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhcccC---HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999864 68899999999999999999864
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-13 Score=125.82 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=73.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h----------h--hhhc---c--cc-CCCCC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G----------M--YHDW---C--ES-FNTYP 226 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g----------~--~~d~---c--e~-~lpfP 226 (309)
..+|||+|||+|+.+..++..+. ..|+++|.+ .|++.|.+|... + . ..+. + +. ..++|
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46899999999986665555442 257788888 689988876320 0 0 1111 0 10 12577
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
++||+|.|..++++..+..+...+|.++.|+|||||+|+++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999999999987544446789999999999999999998754
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.8e-13 Score=120.50 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---c-hhhhhccccCCCCC-CCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---I-GMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---i-g~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
+..+|||+|||+|.++..|++.+. ..++++|.+ .+++.+.++ |+ + -...|. ..+|++ ++||+|+|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM--DDLPFRNEELDLIWSE 121 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSCCCCTTCEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh--hhCCCCCCCEEEEEEc
Confidence 346899999999999999998743 245666776 577776655 33 1 122332 247888 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+++|+ +...+|.++.|+|||||++++.+.
T Consensus 122 ~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 122 GAIYNI----GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp SCGGGT----CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCceec----CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999987 368899999999999999999863
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.4e-13 Score=122.16 Aligned_cols=104 Identities=10% Similarity=0.132 Sum_probs=77.3
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP 226 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP 226 (309)
++.+.+.. ..+|||+|||+|.++..|++. +. .|+++|.+ .+++.+.++ |+. -...|. ..++
T Consensus 65 ~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~ 135 (302)
T 3hem_A 65 LDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW----EEFD 135 (302)
T ss_dssp HHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG----GGCC
T ss_pred HHHcCCCC--cCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH----HHcC
Confidence 33444433 468999999999999999886 63 56777777 577777665 331 122232 2237
Q ss_pred CCcceeEecccccccccc------CCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 227 RTYDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~------~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++||+|++..+++|+++. .+...+|.++.|+|||||++++.+.
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999999999999999654 3467899999999999999999763
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.7e-13 Score=117.18 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=76.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-------ch-hhhhccccCCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-------IG-MYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-------ig-~~~d~ce~~lpfP-~sFDlV 232 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. + +. ...|. ..++++ ++||+|
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~v 105 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA--SSLSFHDSSFDFA 105 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT--TSCCSCTTCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc--cccCCCCCceeEE
Confidence 45899999999999999998864 56777777 5788877743 2 11 11221 246788 999999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+++.+++|+.+......+|.++.|+|||||++++.+.
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 9999999987644445899999999999999999863
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=118.09 Aligned_cols=102 Identities=25% Similarity=0.205 Sum_probs=75.6
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCC-CCc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTY 229 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP-~sF 229 (309)
.++.+.+. ...+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++.. .-...|. + .++ + ++|
T Consensus 25 l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~-~~~-~~~~f 96 (259)
T 2p35_A 25 LLAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADL-A-TWK-PAQKA 96 (259)
T ss_dssp HHTTCCCS--CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCT-T-TCC-CSSCE
T ss_pred HHHhcCCC--CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECCh-h-hcC-ccCCc
Confidence 34444332 3468999999999999999875 43 35566776 68888887732 1122232 2 355 6 999
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+|+++.+++|+. +...+|.++.|+|||||++++.+
T Consensus 97 D~v~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 97 DLLYANAVFQWVP---DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp EEEEEESCGGGST---THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CEEEEeCchhhCC---CHHHHHHHHHHhcCCCeEEEEEe
Confidence 9999999999885 47889999999999999999986
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.1e-13 Score=122.83 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCCCCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
+..+|||+|||+|.++..|++.-.....++++|.+ .+++.+.++ +. + -...|. + .+|++++||+|+++.++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~-~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-T-EIELNDKYDIAICHAFL 99 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCT-T-TCCCSSCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcch-h-hcCcCCCeeEEEECChh
Confidence 35689999999999999998851001245666776 577776654 21 1 122332 2 36777999999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+|+.+ ...+|.++.|+|||||++++.+..
T Consensus 100 ~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTT---PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp GGCSS---HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCCC---HHHHHHHHHHHcCCCCEEEEEecc
Confidence 98864 678999999999999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=116.96 Aligned_cols=101 Identities=14% Similarity=0.263 Sum_probs=75.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----C--------cchhhhhccccCCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G--------LIGMYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----g--------lig~~~d~ce~~lpfP-~sFDlV 232 (309)
..+|||+|||+|.++..|++.+.. ..++++|.+ .+++.+.++ | +.-...|. ...+++ ++||+|
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~v 106 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL--TYQDKRFHGYDAA 106 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT--TSCCGGGCSCSEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc--ccccccCCCcCEE
Confidence 468999999999999999986421 256677777 578887765 1 11111221 245666 899999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
+|+.+++|+.+ .+...+|.++.|+|||||.+++.+..+
T Consensus 107 ~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~~ 144 (217)
T 3jwh_A 107 TVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNIE 144 (217)
T ss_dssp EEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBHH
T ss_pred eeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCcc
Confidence 99999999863 345789999999999999988887654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=120.01 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=88.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-------hhhhhccccCCCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-------GMYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-------g~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
+..+|||+|||+|.++..|++... ..++.+|.+ .+++.+.++.-. -...|. ..++++ ++||+|+++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDFTPEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGCCCCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh--hhcCCCCCCEEEEEEcc
Confidence 357999999999999999988752 256777877 688888776421 112222 236777 7999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH---------------HHHHHHHHHHcCCCeeee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE---------------MINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---------------~~~~i~~l~~~l~W~~~~ 289 (309)
+++|+.+ .....+|.++.|+|||||++++.+... ..+++.++++...++...
T Consensus 155 ~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 155 VIGHLTD-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred hhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 9999874 235689999999999999999976311 356777888777776543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=109.91 Aligned_cols=116 Identities=12% Similarity=0.107 Sum_probs=84.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCC-CCcceeEec-cccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSS-FLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP-~sFDlVh~~-~v~~~~ 241 (309)
..+|||+|||+|.++..|++.+. .+..+|.+ .+++.+.++.. .-...|.. .++++ ++||+|+++ .+++|.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLS--VDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTT--TSCCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccc--cCCCCCCceeEEEECCcHHhhc
Confidence 46899999999999999998864 56677776 57888877642 11122321 35777 999999998 678776
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeee
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~ 288 (309)
.. .+...+|.++.|+|||||.+++..... ..+++..+++...++..
T Consensus 122 ~~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 170 (195)
T 3cgg_A 122 AE-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELE 170 (195)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEE
T ss_pred Ch-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEe
Confidence 42 346789999999999999999975432 35566666666666543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=117.59 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCCCCcceeEec-ccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYPRTYDLLHSS-FLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP~sFDlVh~~-~v~~~~~ 242 (309)
..+|||+|||+|.++..|++.+. .+.++|.+ .+++.+.++.. .-...|.. .++++++||+|+|. .+++|+.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR--DFRLGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT--TCCCSSCEEEEEECTTGGGGCC
T ss_pred CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH--HcccCCCCcEEEEcCchHhhcC
Confidence 46899999999999999988653 56677877 68888887742 11222321 24556899999965 4898886
Q ss_pred ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+..+...+|.++.|+|||||++++.+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 55567899999999999999999975
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=120.29 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=73.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
...+|||+|||+|.++..|+++ +. .++++|.+ .+++.+.++ |+. -...|. ..+||+ ++||+|++
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~fD~V~~ 191 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDTPFDKGAVTASWN 191 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TSCCCCTTCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hcCCCCCCCEeEEEE
Confidence 3468999999999999999886 53 45667776 577776654 431 122232 247888 99999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..+++|+. ...+|.++.|+|||||++++.+
T Consensus 192 ~~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 192 NESTMYVD----LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ESCGGGSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCchhhCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 99999883 7889999999999999999975
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=113.33 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=86.5
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-------c-hhhhhccccCCCCCCCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------I-GMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-------i-g~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++.- + -...|.. .++.+++||+|+++.++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF--TWRPTELFDLIFDYVFF 142 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT--TCCCSSCEEEEEEESST
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchh--cCCCCCCeeEEEEChhh
Confidence 4899999999999999988763 57778887 67888776632 1 1122321 23323899999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------HHHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------~~~~~i~~l~~~l~W~~~~ 289 (309)
+|++ ..+...+|.++.|+|||||++++.+.. -..+.++.+++.-.|+...
T Consensus 143 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 203 (235)
T 3lcc_A 143 CAIE-PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVS 203 (235)
T ss_dssp TTSC-GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEE
T ss_pred hcCC-HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEE
Confidence 9986 345788999999999999999986531 1257788888888887643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-13 Score=124.75 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=71.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----------------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L---------------------------- 211 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l---------------------------- 211 (309)
..+|||+|||+|.++..++..+. -+|+++|.+ .|++.+.++. +
T Consensus 56 g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T 2a14_A 56 GDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 133 (263)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence 36899999999988877777664 368888988 6888776531 0
Q ss_pred -c--hhhhhccccCCCC---C-CCcceeEeccccccc-cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 212 -I--GMYHDWCESFNTY---P-RTYDLLHSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 212 -i--g~~~d~ce~~lpf---P-~sFDlVh~~~v~~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+ ....|.. ...|+ + .+||+|+|+.+++|+ .+..++..+|.++.|+|||||+|++++
T Consensus 134 ~i~~~~~~D~~-~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 134 AVKRVLKCDVH-LGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HEEEEEECCTT-SSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhheEEecccc-CCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 0011111 11333 4 799999999999985 333457789999999999999999985
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=119.62 Aligned_cols=102 Identities=13% Similarity=0.202 Sum_probs=75.7
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP 226 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP 226 (309)
++.+++.. ..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++ |+ +. ...|. ..+|
T Consensus 83 ~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~----~~~~ 153 (318)
T 2fk8_A 83 LDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW----EDFA 153 (318)
T ss_dssp HTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG----GGCC
T ss_pred HHhcCCCC--cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh----HHCC
Confidence 33444433 458999999999999999876 54 56677777 577777765 33 11 12222 2235
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|++..+++|+.+ .+...+|.++.|+|||||.+++.+
T Consensus 154 ~~fD~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp CCCSEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCcCEEEEeChHHhcCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 89999999999999853 357889999999999999999976
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-13 Score=118.42 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=76.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-hhhhhccccCCCCC-CCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-GMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~ 243 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++... -...|. ..+|++ ++||+|++..++.|+..
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA--EDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT--TSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH--HHCCCCCCCEEEEEEcchhhhccc
Confidence 46899999999999999998864 56777887 688888887541 111221 247888 99999999887777643
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+...+|.|+.|+|||||.+++....
T Consensus 130 --~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 130 --NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred --cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 3789999999999999999998654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=118.28 Aligned_cols=94 Identities=16% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Cc--c-hhhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--I-GMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gl--i-g~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++. +. .++++|.+ .+++.+.++ |+ + -...|. ..++++ ++||+|+++
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 38 GAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANI--FSLPFEDSSFDHIFVC 112 (276)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG--GGCCSCTTCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc--ccCCCCCCCeeEEEEe
Confidence 468999999999999999875 33 45666776 577776654 33 1 112232 247888 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+++|+.+ ...+|.++.|+|||||++++.+
T Consensus 113 ~~l~~~~~---~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 113 FVLEHLQS---PEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 99999864 6789999999999999999975
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-13 Score=114.12 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCeEEEeCCcchHH-HHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGF-AAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~f-aa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.+ ...++..+. .++++|.+ .+++.+.++ +. + -...|. ..+|++ ++||+|++..+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDI--RKLPFKDESMSFVYSYGT 98 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT--TSCCSCTTCEEEEEECSC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECch--hhCCCCCCceeEEEEcCh
Confidence 46899999999997 455555554 56677777 577776654 22 1 112232 247888 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+. ..+...++.++.|+|||||++++.+.
T Consensus 99 l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 99 IFHMR-KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99884 23578899999999999999999864
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-13 Score=113.12 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----chhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|++.+.. .++++|.+ .+++.+.++.- .-...|. ..++++ ++||+|+++.+++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~--~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDV--RKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCT--TSCCSCSSCEEEEEEESHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcch--hcCCCCCCcccEEEECcchh
Confidence 458999999999999999987542 56677777 57888777631 1122232 135888 9999999998887
Q ss_pred ccc------------ccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 240 DVT------------QRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 240 ~~~------------~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
++. +..+...+|.++.|+|||||.+++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 653 12246789999999999999999988643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.7e-13 Score=120.87 Aligned_cols=116 Identities=16% Similarity=0.005 Sum_probs=83.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-c----------------------ch-hhhhcccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-L----------------------IG-MYHDWCES 221 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-l----------------------ig-~~~d~ce~ 221 (309)
..+|||+|||+|.++.+|++++. .|+++|.+ .+++.|+++. + +. ...|..
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~-- 143 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF-- 143 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT--
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc--
Confidence 35899999999999999999875 57888988 6888887543 1 10 112221
Q ss_pred CCCCC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHHHcCCCee
Q 021643 222 FNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWST 287 (309)
Q Consensus 222 ~lpfP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~ 287 (309)
.++++ ++||+|++..+|+|++. .+...++.++.|+|||||++++.... -..+++..+... .|++
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~-~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v 221 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINP-GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSM 221 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCH-HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEE
Confidence 24554 79999999999998863 45778999999999999998643210 124567777765 3765
Q ss_pred ee
Q 021643 288 NI 289 (309)
Q Consensus 288 ~~ 289 (309)
..
T Consensus 222 ~~ 223 (252)
T 2gb4_A 222 QC 223 (252)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.8e-13 Score=118.70 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----ch-hhhhc
Q 021643 146 THWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG-MYHDW 218 (309)
Q Consensus 146 ~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig-~~~d~ 218 (309)
..|...+-+...+.+. ....+|||+|||+|.++.++++... -+++.+|.+ .+++.|.++.- +. ...++
T Consensus 43 ~~we~~~m~~~a~~~~---~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a 117 (236)
T 3orh_A 43 ERWETPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW 117 (236)
T ss_dssp EGGGHHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH
T ss_pred HHHHHHHHHHHHHhhc---cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH
Confidence 4676654432222221 2236899999999999999988653 356777777 68888877542 11 12232
Q ss_pred cccCCCCC-CCcceeEeccccccc--cccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 219 CESFNTYP-RTYDLLHSSFLLSDV--TQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 219 ce~~lpfP-~sFDlVh~~~v~~~~--~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
-+...+++ ++||.|+...+.... .+..+.+.++.|+.|+|||||.|++.+
T Consensus 118 ~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 118 EDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred HhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 22245788 999999864333221 122246789999999999999999864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=114.67 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
..+|||+|||+|.++..|+.. .++|.+ .+++.+.++++.-...|. ..++++ ++||+|++..+++|+.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA--ENLPLKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT--TBCCSCTTCEEEEEEESCGGGSS--
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc--ccCCCCCCCeeEEEEcchHhhcc--
Confidence 468999999999999999876 445666 588888887653223332 246788 8999999999999885
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...+|.++.|+|||||++++.+
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEE
Confidence 46889999999999999999985
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-12 Score=108.48 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=82.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
+..+|||+|||+|.++..|. .. ++.+|.+.. .+.-...|. + .+|++ ++||+|+++.++++
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~-~~-----v~~~D~s~~-------~~~~~~~d~-~-~~~~~~~~fD~v~~~~~l~~---- 127 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR-NP-----VHCFDLASL-------DPRVTVCDM-A-QVPLEDESVDVAVFCLSLMG---- 127 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC-SC-----EEEEESSCS-------STTEEESCT-T-SCSCCTTCEEEEEEESCCCS----
T ss_pred CCCeEEEECCcCCHHHHHhh-cc-----EEEEeCCCC-------CceEEEecc-c-cCCCCCCCEeEEEEehhccc----
Confidence 34689999999999999884 22 333444422 111111221 1 37888 99999999999953
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeCHH---HHHHHHHHHHcCCCeeeee-----cceEEEEEeC
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDTLE---MINKLKPVLHSLQWSTNIY-----HDQFLVGKKG 300 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~~~---~~~~i~~l~~~l~W~~~~~-----~e~~li~~K~ 300 (309)
.+...+|.++.|+|||||++++.+... ..+++..+++...++.... .-.+++++|.
T Consensus 128 ~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEEC
T ss_pred cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEec
Confidence 357889999999999999999987654 4577888888888876543 2357778876
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=115.12 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=72.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-c-hhhhhccccCCCCCCCcceeEecc-ccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-I-GMYHDWCESFNTYPRTYDLLHSSF-LLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-i-g~~~d~ce~~lpfP~sFDlVh~~~-v~~ 239 (309)
.+|||+|||+|.++..|++. . .++++|.+ .+++.+.++. . + -...|.. .++++++||+|++.. +++
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMR--ELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGG--GCCCSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChh--hcCCCCCcCEEEEeCCchh
Confidence 68999999999999999887 3 56777877 5777776652 1 1 1122321 356679999999986 899
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+.+..+...+|.++.|+|||||.+++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 88655567889999999999999999854
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-13 Score=122.73 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=73.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCcc-------------------------------
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGLI------------------------------- 212 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgli------------------------------- 212 (309)
...+|||+|||+|.++..|+.. +. ..|+++|.+ .+++.|.++--.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~--~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGP--SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCC--SEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 3568999999999999999885 21 256777887 578888765210
Q ss_pred ----------------------------------hhhhhccc---cCCCCC-CCcceeEecccccccc---ccCCHHHHH
Q 021643 213 ----------------------------------GMYHDWCE---SFNTYP-RTYDLLHSSFLLSDVT---QRCDIADVA 251 (309)
Q Consensus 213 ----------------------------------g~~~d~ce---~~lpfP-~sFDlVh~~~v~~~~~---~~~~~~~~L 251 (309)
-..+|+.. ..++++ ++||+|+|..+++|++ +..++..+|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 01112111 112466 9999999999997764 445688999
Q ss_pred HHHhhcccCCeEEEEEeC
Q 021643 252 VEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 252 ~Em~RVLRPGG~lii~D~ 269 (309)
.++.|+|||||+|++...
T Consensus 204 ~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHHEEEEEEEEEECC
T ss_pred HHHHHHhCCCcEEEEecC
Confidence 999999999999999743
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=108.62 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=73.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecc-c
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSF-L 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~-v 237 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++ |+ +....+..+....++ ++||+|+++. .
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 35899999999999999998853 46677777 577777654 33 222222222223355 8999998873 2
Q ss_pred ccc-----ccccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCC
Q 021643 238 LSD-----VTQRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQ 284 (309)
Q Consensus 238 ~~~-----~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~ 284 (309)
+.+ .....+...+|.++.|+|||||++++.... +..+.+...++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~ 157 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLD 157 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 222 001123457899999999999999987532 23455666665554
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-13 Score=120.91 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC---------------c---ch--------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG---------------L---IG-------------- 213 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg---------------l---ig-------------- 213 (309)
..+|||+|||+|.++..++..+. ..|+++|.+ .|++.+.++- + .+
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCeEEEECCCcChHHHHhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 46899999999996544443221 257788888 6888776521 0 01
Q ss_pred -----hhhhccccCCC-----CC-CCcceeEecccccccccc-CCHHHHHHHHhhcccCCeEEEEEeCH-----------
Q 021643 214 -----MYHDWCESFNT-----YP-RTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTL----------- 270 (309)
Q Consensus 214 -----~~~d~ce~~lp-----fP-~sFDlVh~~~v~~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D~~----------- 270 (309)
...|. +..+| +| ++||+|+|+.+|+|+... .++..+|.|+.|+|||||+|++.+..
T Consensus 150 ~~~~~~~~D~-~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 150 RVKRVLPIDV-HQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HEEEEECCCT-TSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhceEEeccc-CCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 00022 11244 45 679999999999985431 24788999999999999999996411
Q ss_pred -----HHHHHHHHHHHcCCCee
Q 021643 271 -----EMINKLKPVLHSLQWST 287 (309)
Q Consensus 271 -----~~~~~i~~l~~~l~W~~ 287 (309)
-..+.+.++++.-.++.
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEE
T ss_pred eeeccCCHHHHHHHHHHcCCeE
Confidence 12566777776666654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.9e-13 Score=117.76 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-----ch-hhhhccccCCCCC-CCcceeEe-ccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-----IG-MYHDWCESFNTYP-RTYDLLHS-SFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-----ig-~~~d~ce~~lpfP-~sFDlVh~-~~v 237 (309)
..+|||+|||+|.++..|++.+. ..++++|.+ .+++.+.++.- +. ...|..+...||+ ++||+|++ ...
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 46899999999999999987653 267788888 68888887641 11 1122211112888 99999999 544
Q ss_pred ccccc--ccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVT--QRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+ +.+ +..+.+.++.|+.|+|||||++++.+..
T Consensus 139 ~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 139 L-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp C-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred c-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 3 222 2223557899999999999999987643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-12 Score=110.24 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=69.5
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcceeEecccccc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++ |+ .-...|. ..++++ ++||+|+++ +.|
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL--ADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT--TTBSCCTTTCSEEEEE--CCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh--hhcCCCcCCccEEEEE--hhc
Confidence 899999999999999998864 56777887 577777665 32 1112232 135788 999999995 445
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+. ..+...+|.++.|+|||||++++.+
T Consensus 105 ~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 131 (202)
T 2kw5_A 105 LP-SSLRQQLYPKVYQGLKPGGVFILEG 131 (202)
T ss_dssp CC-HHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 52 2357889999999999999999985
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=115.96 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=82.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..|++.+. +|+++|.+ .+++.+.++ |+ + -...|.. .++++++||+|+++.+|+
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDIN--AANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG--GCCCCSCEEEEEECSSGG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc--cccccCCccEEEEccchh
Confidence 46899999999999999999864 56777777 577766654 32 1 1122321 244479999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeCH--------------HHHHHHHHHHHcCCCeeeee
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~~~~~i~~l~~~l~W~~~~~ 290 (309)
|+.+ .+...+|.++.|+|||||++++.... -..++++++... |+....
T Consensus 196 ~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 196 FLNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 8853 45778999999999999997775321 013456666655 776543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-12 Score=125.83 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc---------C-c----ch-hhhhccc-cCC---C
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR---------G-L----IG-MYHDWCE-SFN---T 224 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR---------g-l----ig-~~~d~ce-~~l---p 224 (309)
..+|||+|||+|.++..|++. +. ..++++|.+ .+++.+.++ | + +. ...|..+ ..+ |
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEH--GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTT--CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 468999999999999988874 21 256677777 688888776 4 1 11 1122211 011 8
Q ss_pred CC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------------------HHHHHHHHHH
Q 021643 225 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------------EMINKLKPVL 280 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------------~~~~~i~~l~ 280 (309)
+| ++||+|+++.+++|+.+ ...+|.|+.|+|||||++++.+.. -..+.+.+++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred CCCCCEEEEEEccchhcCCC---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 99 99999999999998864 788999999999999999998521 0126777788
Q ss_pred HcCCCee
Q 021643 281 HSLQWST 287 (309)
Q Consensus 281 ~~l~W~~ 287 (309)
++-.++.
T Consensus 239 ~~aGF~~ 245 (383)
T 4fsd_A 239 AEAGFRD 245 (383)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 7777753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-12 Score=123.06 Aligned_cols=99 Identities=13% Similarity=0.287 Sum_probs=72.9
Q ss_pred CCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCCCCCCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNTYPRTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lpfP~sFDlVh~~ 235 (309)
+..+|||+|||+|.++..|++. +. .++.+|.+.+++.+.++ |+. -..+|..+..+|+|++||+|+++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 4579999999999999999873 33 35555666677777664 331 12233222112678899999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+++|+.+. +...+|.++.|+|||||+++|.|
T Consensus 256 ~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 999998753 45689999999999999999976
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-12 Score=119.94 Aligned_cols=102 Identities=16% Similarity=0.137 Sum_probs=73.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--------------chhhhhccccCC----CC-
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--------------IGMYHDWCESFN----TY- 225 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--------------ig~~~d~ce~~l----pf- 225 (309)
+..+|||+|||+|.++..|++.+. ..++++|.+ .+++.+.++.- .-...|. + .+ +|
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~-~-~~~~~~~~~ 109 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS-S-KELLIDKFR 109 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT-T-TSCSTTTCS
T ss_pred CCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc-c-ccchhhhcc
Confidence 346899999999999999987542 256777877 67877776521 1112232 2 23 36
Q ss_pred -C-CCcceeEeccccccc-cccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 226 -P-RTYDLLHSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 226 -P-~sFDlVh~~~v~~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
+ ++||+|+|+.++++. .+..+...+|.++.|+|||||++++.....
T Consensus 110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 3 599999999999876 443456789999999999999999987543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-12 Score=119.51 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=70.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---------c-hhhhhccccCCCCCCCcceeEec-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------I-GMYHDWCESFNTYPRTYDLLHSS- 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---------i-g~~~d~ce~~lpfP~sFDlVh~~- 235 (309)
.+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++.. + -...|.. .++++++||+|+|+
T Consensus 84 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~v~~~~ 158 (299)
T 3g2m_A 84 GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS--AFALDKRFGTVVISS 158 (299)
T ss_dssp SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT--BCCCSCCEEEEEECH
T ss_pred CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh--cCCcCCCcCEEEECC
Confidence 3899999999999999999864 46677777 57877776521 1 1222321 35667999999976
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+++|. +..+...+|.++.|+|||||++++.+.
T Consensus 159 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 159 GSINEL-DEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp HHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccC-CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 445544 334578899999999999999999864
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=102.61 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=78.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++... ...+..+|.+ .+++.+.++ |+. -...|.. ..++.. ++||+|+++..
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP-RAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTT-GGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchH-hhhhccCCCCCEEEECCc
Confidence 46899999999999999988621 1356778887 577777764 332 1112211 234555 89999999988
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWST 287 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~ 287 (309)
++| ..++.++.|+|||||++++.+. .+....+..+.+....+.
T Consensus 104 ~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 104 LTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTI 147 (178)
T ss_dssp TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEE
T ss_pred ccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCee
Confidence 876 2389999999999999999875 445566666666655554
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-12 Score=117.24 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=73.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcch-hhhhccccCC---CC-CCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIG-MYHDWCESFN---TY-PRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig-~~~d~ce~~l---pf-P~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++++. .|+++|.+ .|++.+.++.-.. ...++.+... .. +++||+|+|+.+++|
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred cCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 46899999999999999999874 56778888 6999998874211 1122211111 12 379999999999998
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.. .+...++.++.|+| |||.++++-
T Consensus 123 ~~~-~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 123 FTT-EEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp SCH-HHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCH-HHHHHHHHHHHHhC-cCcEEEEEe
Confidence 853 34678999999999 999999984
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-12 Score=117.37 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=73.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCC-C-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTY-P-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpf-P-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+..+. ..++++|.+ .+++.+.++ |+ +. ...|. ..+|+ + ++||+|+|.
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS--YGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT--TTSCCCCSSCEEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc--cccccCCCCCcCEEEEC
Confidence 46899999999999998887653 246677777 577777665 22 11 12232 13577 5 899999999
Q ss_pred cccccc-cccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.+++|. .+..+...+|.++.|+|||||++++....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999773 23345788999999999999999998754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-12 Score=109.88 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=72.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------cchhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------LIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------lig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++. +.-...|.. .++++ ++||+|+++.++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR--KLSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT--SCCSCTTCEEEEEEESCG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchh--cCCCCCCcEEEEEEcCch
Confidence 46899999999999999998764 56777776 5777776542 111222321 35778 899999999885
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
++.. ..+...+|.++.|+|||||.+++.+..
T Consensus 114 ~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 114 VHFE-PLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGCC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4433 224678999999999999999998754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=115.66 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=84.3
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--c----hhhhhccccCCCCC-CC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--I----GMYHDWCESFNTYP-RT 228 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--i----g~~~d~ce~~lpfP-~s 228 (309)
++.+++.. ...+|||+|||||+|+..|++++. ..|.++|.+ +||..+.++.. . ..+.... ...+| .+
T Consensus 77 l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~ 151 (291)
T 3hp7_A 77 LAVFNLSV-EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGL 151 (291)
T ss_dssp HHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCC
T ss_pred HHhcCCCc-cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCC
Confidence 34444432 236899999999999999988763 246777887 68877554321 1 0111110 11246 67
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC----------------------HHHHHHHHHHHHcCCCe
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------------------LEMINKLKPVLHSLQWS 286 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------------------~~~~~~i~~l~~~l~W~ 286 (309)
||+|.|+.+|+++ ..+|.|+.|+|||||.+++... ...++++...+....|.
T Consensus 152 fD~v~~d~sf~sl------~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~ 225 (291)
T 3hp7_A 152 PSFASIDVSFISL------NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFS 225 (291)
T ss_dssp CSEEEECCSSSCG------GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCEEEEEeeHhhH------HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCE
Confidence 9999999888755 4489999999999999998721 13577888888888998
Q ss_pred eee
Q 021643 287 TNI 289 (309)
Q Consensus 287 ~~~ 289 (309)
+..
T Consensus 226 v~~ 228 (291)
T 3hp7_A 226 VKG 228 (291)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=110.27 Aligned_cols=97 Identities=21% Similarity=0.299 Sum_probs=70.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-c-hhhhhccccCCCCCCCcceeEeccc-c
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-I-GMYHDWCESFNTYPRTYDLLHSSFL-L 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-i-g~~~d~ce~~lpfP~sFDlVh~~~v-~ 238 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++ |+ + -...|.. .++++++||+|+|... +
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVL--EIAFKNEFDAVTMFFSTI 116 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGG--GCCCCSCEEEEEECSSGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChh--hcccCCCccEEEEcCCch
Confidence 46899999999999999998864 56777877 677777654 32 1 1122321 3566689999998643 4
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+ +..+...+|.++.|+|||||.+++...
T Consensus 117 ~~~-~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 117 MYF-DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GGS-CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC-CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 443 334578899999999999999998643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-12 Score=113.53 Aligned_cols=99 Identities=10% Similarity=-0.019 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhhhhcccc--CCCCC--CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMYHDWCES--FNTYP--RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~~d~ce~--~lpfP--~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++.- .-...|..+. ..+|+ ..||+|+++.+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 46899999999999999998654 56677777 68888877642 1111221110 01222 24999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+.. .+...+|.++.|+|||||++++.+.
T Consensus 134 ~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 134 FHHIPV-EKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp STTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 998863 4578999999999999999988864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.8e-11 Score=102.23 Aligned_cols=115 Identities=11% Similarity=0.044 Sum_probs=80.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++..- ...++.+|.+ .+++.+.++ |+ +. ...|.. ..++...+||+|+++..+
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~D~i~~~~~~ 118 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP-EGLDDLPDPDRVFIGGSG 118 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT-TTCTTSCCCSEEEESCCT
T ss_pred CCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh-hhhhcCCCCCEEEECCCC
Confidence 46899999999999999988641 0245666776 577776654 33 11 112211 122222789999998766
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~ 289 (309)
. ++..++.++.|+|||||++++.+. .+..+++..++++..|+...
T Consensus 119 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 119 G------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp T------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred c------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 4 467899999999999999999864 45677888888888885443
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-11 Score=104.08 Aligned_cols=108 Identities=15% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----h-hhhhccccCCCCC-CCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----G-MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g-~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+..+|||+|||+|.++..+++.+. .+.++|.+ .+++.+.++ |+. . ...|. ..+++ ++||+|++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~D~v~~ 125 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YENVKDRKYNKIIT 125 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TTTCTTSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hcccccCCceEEEE
Confidence 346899999999999999988743 45666766 566666654 321 1 11221 23455 89999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHH
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLH 281 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~ 281 (309)
+..+++.. .....++.++.|+|||||.+++.+... ....+.+.++
T Consensus 126 ~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~ 171 (194)
T 1dus_A 126 NPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMK 171 (194)
T ss_dssp CCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHH
T ss_pred CCCcccch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHH
Confidence 98776522 246789999999999999999986543 3333444443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=107.05 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=82.9
Q ss_pred CCeEEEeCCc-chHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc-chhh-hhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNAS-YGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG-~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~-~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+||| +|.++..++.. +. .++++|.+ .+++.+.++ |+ +... .|. +...+++ ++||+|+++-
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECC
Confidence 4689999999 99999999886 43 46667776 577766654 33 1111 221 1245777 9999999986
Q ss_pred cccccccc----------------CCHHHHHHHHhhcccCCeEEEEEe--CHHHHHHHHHHHHcCCCeeeee
Q 021643 237 LLSDVTQR----------------CDIADVAVEMDRILRPGGYVLVQD--TLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 237 v~~~~~~~----------------~~~~~~L~Em~RVLRPGG~lii~D--~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
.+.+..+. .....++.++.|+|||||++++.. ..+..+++.+.++...|+....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE
Confidence 66543221 114779999999999999999853 3456788888888888876553
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.9e-12 Score=114.02 Aligned_cols=92 Identities=9% Similarity=0.029 Sum_probs=68.9
Q ss_pred CCCeEEEeCCcchHHHHHhhc---CCCEEEEecccCCc-ccHHHHHhc-----Cc---c-hhhhhccccCCCCC------
Q 021643 166 SVRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAP-DTLSIIFDR-----GL---I-GMYHDWCESFNTYP------ 226 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~---~~v~v~~V~p~d~s-~~l~~a~eR-----gl---i-g~~~d~ce~~lpfP------ 226 (309)
+..+|||+|||+|.++..|++ .+. .++++|.+ .+++.+.++ |. + -...|. + .++++
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~~~~ 110 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS-D-DFKFLGADSVD 110 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT-T-CCGGGCTTTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH-H-hCCcccccccc
Confidence 357899999999999999994 333 46677777 577777765 21 1 112222 1 23433
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++||+|+|+.+++|+ ++..+|.++.|+|||||++++
T Consensus 111 ~~~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp SSCEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 599999999999988 478899999999999999998
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-12 Score=107.81 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=82.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+. ..+.++|.+ .+++.+.++ |+.. +.-.+.....++ ++||+|+++..+++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccCCCCceEEEECCcHHH
Confidence 35899999999999999998753 246677776 577777665 3321 111112234566 99999999987764
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeeee
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~ 289 (309)
+..++.++.|+|||||++++.+. ....+.+..+++...++...
T Consensus 138 ------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~ 181 (205)
T 3grz_A 138 ------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDL 181 (205)
T ss_dssp ------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEE
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEE
Confidence 35689999999999999999753 33466777788777777543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-12 Score=113.48 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=82.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----------------------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------------------------------- 211 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---------------------------------- 211 (309)
..+|||+|||+|.++..++..+. ..|+++|.+ .+++.+.++.-
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 46899999999999998887764 467888887 57777765421
Q ss_pred -c-h-hhhhccccCCC---CC-CCcceeEeccccccccc-cCCHHHHHHHHhhcccCCeEEEEEeCHH------------
Q 021643 212 -I-G-MYHDWCESFNT---YP-RTYDLLHSSFLLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQDTLE------------ 271 (309)
Q Consensus 212 -i-g-~~~d~ce~~lp---fP-~sFDlVh~~~v~~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~~------------ 271 (309)
+ . ...|.. ...+ .. ++||+|+|+.+++|+.. ..++..+|.++.|+|||||++++.+...
T Consensus 135 ~v~~~~~~d~~-~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 135 AIKQVLKCDVT-QSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HEEEEEECCTT-SSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hheeEEEeeec-cCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 1 1 112221 1223 22 79999999999985432 1247889999999999999999976210
Q ss_pred ----HHHHHHHHHHcCCCeee
Q 021643 272 ----MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 272 ----~~~~i~~l~~~l~W~~~ 288 (309)
..+.+.+++....++..
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEE
T ss_pred ccccCHHHHHHHHHHCCCEEE
Confidence 23467777777777654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=109.78 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-cc----HHHHHhcC-cchhhhhcccc--CCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT----LSIIFDRG-LIGMYHDWCES--FNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~----l~~a~eRg-lig~~~d~ce~--~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++.... ..|.++|.+ .+ ++.+.++. +.....|..+. ..+++++||+|+++. .
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-~ 135 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-A 135 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-C
T ss_pred CCEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-c
Confidence 358999999999999988874211 146677776 33 44454442 21122232111 135569999999972 2
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ..+...++.|+.|+|||||++++.-
T Consensus 136 ~----~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 136 Q----KNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp S----TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1 1224456999999999999999973
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=103.75 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=83.7
Q ss_pred CeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
.+|||+|||+|.++..|++. +. ..++++|.+ .+++.+.++ |+ +. ...|. +....++ ++||+|+++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~v~~~ 100 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH-QNMDKYIDCPVKAVMFN 100 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG-GGGGGTCCSCEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHhhhccCCceEEEEc
Confidence 58999999999999998875 21 156777887 577776655 33 11 12222 2223355 999999998
Q ss_pred ccccc------ccccCCHHHHHHHHhhcccCCeEEEEEeC------HHHHHHHHHHHHcCC---Ceeeee--------cc
Q 021643 236 FLLSD------VTQRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQ---WSTNIY--------HD 292 (309)
Q Consensus 236 ~v~~~------~~~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~---W~~~~~--------~e 292 (309)
..+.. .....+...++.++.|+|||||++++.+. .+....+.+.++.+. |++... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp 180 (197)
T 3eey_A 101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPP 180 (197)
T ss_dssp ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCC
T ss_pred CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCC
Confidence 65511 11111345799999999999999999852 224555666665554 665433 33
Q ss_pred eEEEEEeCc
Q 021643 293 QFLVGKKGF 301 (309)
Q Consensus 293 ~~li~~K~~ 301 (309)
.++|.+|..
T Consensus 181 ~~~~~~~~~ 189 (197)
T 3eey_A 181 ILVCIEKIS 189 (197)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcc
Confidence 566666653
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=96.74 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=80.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.+. .+.++|.+ .+++.+.++ |+ +. ...|. + .+++ ++||+|+++.+
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~-~--~~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRA-E--DVLDKLEFNKAFIGGT 109 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCH-H--HHGGGCCCSEEEECSC
T ss_pred CCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCc-c--ccccCCCCcEEEECCc
Confidence 45899999999999999988443 45666666 567666654 32 11 12232 1 2667 89999999877
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCeeeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
.+...++.++.|+ |||.+++.+ ..+...++.+.++...|++...
T Consensus 110 -------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 2467899999999 999999987 5566778888888888887655
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-11 Score=115.13 Aligned_cols=98 Identities=22% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCCCCCCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNTYPRTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lpfP~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|++. +. .++.+|.+.+++.+.++ |+. -..+|. +.++|.+||+|++
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~p~~~D~v~~ 241 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF---FDPLPAGAGGYVL 241 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCSCSEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC---CCCCCCCCcEEEE
Confidence 44579999999999999999873 22 23444555566666543 431 122232 2466678999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+.+++|+.+. +..++|.++.|+|||||+++|.|.
T Consensus 242 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 242 SAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEee
Confidence 9999998752 357899999999999999999874
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=103.04 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=84.2
Q ss_pred CCeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCC----CCCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTY----PRTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpf----P~sFDlVh 233 (309)
..+|||+|||+|.++..|+. .+. .|+++|.+ .+++++.++ |+ +..++.-.+ .+++ +++||+|+
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAE-TFGQRKDVRESYDIVT 146 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHH-HHTTCTTTTTCEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHH-HhcccccccCCccEEE
Confidence 46899999999999988884 333 46677777 577776553 43 211211112 1333 37999999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---HHHHHHHHHHHHcCCCeeeee----------cceEEEEEeC
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTNIY----------HDQFLVGKKG 300 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~~~----------~e~~li~~K~ 300 (309)
|..+ .++..++.++.|+|||||++++.+. .+.+.++.+.++...++.... ...+++.+|.
T Consensus 147 ~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 147 ARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp EECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred Eecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 8762 2477899999999999999999763 345566666777777765322 2346677776
Q ss_pred cCCC
Q 021643 301 FWRP 304 (309)
Q Consensus 301 ~w~~ 304 (309)
-.++
T Consensus 220 ~~~~ 223 (240)
T 1xdz_A 220 KNTP 223 (240)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 4443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-11 Score=110.25 Aligned_cols=98 Identities=20% Similarity=0.262 Sum_probs=71.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccch----hhhhccccCCCCCCCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLIG----MYHDWCESFNTYPRTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----glig----~~~d~ce~~lpfP~sFDlVh~~ 235 (309)
+..+|||+|||+|.++..+++. +. .++.+|.+.+++.+.++ |+.. ..+|.. ..++|..||+|+++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~D~v~~~ 239 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAF--EVDYGNDYDLVLLP 239 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTT--TSCCCSCEEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccc--cCCCCCCCcEEEEc
Confidence 4579999999999999999875 32 45556666566666554 3311 122321 24677559999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+++|+.+ .+...+|.++.|+|||||++++.|.
T Consensus 240 ~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 240 NFLHHFDV-ATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp SCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chhccCCH-HHHHHHHHHHHHhCCCCcEEEEEee
Confidence 99999853 2457899999999999999999763
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.4e-11 Score=98.64 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=79.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..++... ..+..+|.+ .+++.+.++ |+ +. ...|..+ .++..++||+|+++.+
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALCKIPDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHTTSCCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcccCCCCCEEEECCc
Confidence 4689999999999999999876 356677776 567666653 32 11 1122111 1222268999999877
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~ 288 (309)
+++ +..++.++.|+|||||.+++.+. .+...++.++++...|+..
T Consensus 110 ~~~------~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 110 GGE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp TTC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred hHH------HHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 653 46799999999999999999875 5567777888877777544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-11 Score=103.26 Aligned_cols=110 Identities=13% Similarity=-0.009 Sum_probs=76.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hh-hhhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GM-YHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~-~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++ |+. .. ..|. +..++...+||+|++...
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~-~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA-PAALADLPLPEAVFIGGG 131 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT-TGGGTTSCCCSEEEECSC
T ss_pred CCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch-hhhcccCCCCCEEEECCc
Confidence 46899999999999999998753 46667776 577776654 332 11 1221 111222268999998763
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~ 288 (309)
+ +.+ ++.++.|+|||||++++... .+...++.+.++...++..
T Consensus 132 ~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 132 G-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL 175 (204)
T ss_dssp C-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred c-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence 3 355 99999999999999999864 5567777777776666543
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.1e-11 Score=100.15 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=82.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc-
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR- 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~- 244 (309)
.+|||+|||+|.++..|++++ .+.++|.+ .+++. ...+.-...|. ..+++ ++||+|+++..+++..+.
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~---~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADL---LCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECST---TTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECCh---hhhcccCCCCEEEECCCCccCCccc
Confidence 489999999999999999986 67778887 56666 22222222332 23677 999999999887754332
Q ss_pred -----CCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCeeeee
Q 021643 245 -----CDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 245 -----~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~~~~~ 290 (309)
.+...++.++.|.| |||.+++.... ...+++.++++...|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEE
Confidence 12345889999999 99999997643 45678888888888886544
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.2e-11 Score=113.93 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=65.5
Q ss_pred CCeEEEeCCcchHHHHHhh-cC-CCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALI-DQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~-~~-~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|++++.+. .. +. .|+++|.+ .+++.|+++ |+ ....-.+.....+| ++||+|++....
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~ 198 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA 198 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC
T ss_pred cCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc
Confidence 4699999999998775544 32 33 56777777 688887765 54 11111111123356 999999976542
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.+.++++.|+.|+|||||.+++++..
T Consensus 199 ------~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 199 ------EPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp ------SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 35788999999999999999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-11 Score=111.81 Aligned_cols=98 Identities=31% Similarity=0.421 Sum_probs=70.3
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCCCCCCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNTYPRTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lpfP~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|++. +. .++.+|.+.+++.+.++ |+. -..+|. .-++|..||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDF---FKPLPVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCC---CCcCCCCCCEEEE
Confidence 34579999999999999999874 33 34445554466666553 331 122232 2356755999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+.+++|+.+. +...+|.++.|+|||||+++|.|.
T Consensus 255 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 255 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999998642 235899999999999999999876
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-11 Score=107.00 Aligned_cols=96 Identities=17% Similarity=0.234 Sum_probs=66.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC-C--CEEEEecccCCc-c------cHHHHHhc----Cc---ch-hhhh-ccccCCCCC-
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-P--LWVMNVVPIDAP-D------TLSIIFDR----GL---IG-MYHD-WCESFNTYP- 226 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~--v~v~~V~p~d~s-~------~l~~a~eR----gl---ig-~~~d-~ce~~lpfP- 226 (309)
..+|||+|||+|.++..|++. + .. ++++|.+ . +++.+.++ |+ +. ...| .....+||+
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~---v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 120 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGH---VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIAD 120 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCE---EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCE---EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCC
Confidence 468999999999999999875 2 33 4444554 2 67766554 22 11 1122 222356788
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|+++.+++|+.+ ...++..+.++++|||++++.+
T Consensus 121 ~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999875 4555666666666699999975
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=114.92 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHh----cCcc---hhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGLI---GMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~e----Rgli---g~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++.+. ..|.++|.+++++.|.+ .|+. ... .|. + .+++| ++||+|++..+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV-E-EVELPVEKVDIIISEWM 142 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCT-T-TCCCSSSCEEEEEECCC
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcH-H-HccCCCCceEEEEEccc
Confidence 36899999999999999998864 13445555545555544 3442 112 222 2 46899 99999999876
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
..++.....+..++.+++|+|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 666555567889999999999999998754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-11 Score=108.62 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC--CC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT--YP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp--fP-~sFDlVh~~ 235 (309)
...|||+|||+|.++..|++..-. .+|+++|.+ ++++.+.++ |+. . ...|. +..++ ++ ++||.|++.
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da-~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDA-VEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCH-HHHHHHHSCTTCEEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCH-HHHHHHHcCCCChheEEEe
Confidence 468999999999999999874211 246677777 566665543 441 1 11221 11233 77 999999987
Q ss_pred cccccccccC-----CHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHH
Q 021643 236 FLLSDVTQRC-----DIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLH 281 (309)
Q Consensus 236 ~v~~~~~~~~-----~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~ 281 (309)
+......... --..++.++.|+|||||++++... ..+.+.+..++.
T Consensus 113 ~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~ 164 (218)
T 3dxy_A 113 FPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS 164 (218)
T ss_dssp SCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 4433211111 113599999999999999988754 555666665554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=108.44 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----------Cc--chh-hhhccccCCC--CC-CCc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL--IGM-YHDWCESFNT--YP-RTY 229 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----------gl--ig~-~~d~ce~~lp--fP-~sF 229 (309)
..+|||+|||+|.++..|+...-. .+++++|.+ .+++.|.++ ++ +.. ..| +...++ |+ ++|
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d-~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSN-AMKHLPNFFYKGQL 124 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECC-TTTCHHHHCCTTCE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECc-HHHhhhhhCCCcCe
Confidence 357999999999999999875210 256777777 577766542 22 111 122 122355 78 999
Q ss_pred ceeEecccccccc-----ccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHc
Q 021643 230 DLLHSSFLLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHS 282 (309)
Q Consensus 230 DlVh~~~v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~ 282 (309)
|.|++...-.+.. .+.....+|.++.|+|||||.|++. |.....+.+.+.+..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEE 183 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 9998754322211 1111246999999999999999885 555555655555443
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=111.53 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=68.4
Q ss_pred CeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Cc----chhhhhccccCCCCCCCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GL----IGMYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gl----ig~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.+|||+|||+|.++..|++. +. .++.+|.+.+++.+.++ |+ .-..+|. +-++|++||+|+++.+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA---RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM---LQEVPSNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC---EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCT---TTCCCSSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCC---CCCCCCCCCEEEEchh
Confidence 79999999999999999874 22 33444554466666554 21 1122332 2356788999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++|+.+ .+...+|.++.|+|||||+++|.|
T Consensus 243 l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 243 IGDLDE-AASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 998864 234589999999999999999986
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-11 Score=103.95 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=75.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----C--cchhhhhccccCCCCC------CCccee
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----G--LIGMYHDWCESFNTYP------RTYDLL 232 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----g--lig~~~d~ce~~lpfP------~sFDlV 232 (309)
+..+|||+|||+|.++..+++... ...++++|.+ .+++.+.++ | +.-...|..+ +++ ++||+|
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~fD~i 105 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE---WLIERAERGRPWHAI 105 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHH---HHHHHHHTTCCBSEE
T ss_pred CCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh---hhhhhhhccCcccEE
Confidence 346899999999999999988521 1245666665 466665544 2 1112223221 222 899999
Q ss_pred Eeccccccc------cccC--------------C---HHHHHHHHhhcccCCeE-EEEEeCHHHHHHHHHHHH--cCCCe
Q 021643 233 HSSFLLSDV------TQRC--------------D---IADVAVEMDRILRPGGY-VLVQDTLEMINKLKPVLH--SLQWS 286 (309)
Q Consensus 233 h~~~v~~~~------~~~~--------------~---~~~~L~Em~RVLRPGG~-lii~D~~~~~~~i~~l~~--~l~W~ 286 (309)
+++--+.+. .... . ...++.++.|+|||||+ +++.-.....+.+..++. .-.|.
T Consensus 106 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~ 185 (215)
T 4dzr_A 106 VSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGF 185 (215)
T ss_dssp EECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTE
T ss_pred EECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCc
Confidence 997444321 1100 0 17789999999999999 666544444566666666 55564
Q ss_pred eeee------cceEEEEEeC
Q 021643 287 TNIY------HDQFLVGKKG 300 (309)
Q Consensus 287 ~~~~------~e~~li~~K~ 300 (309)
.... .+++++++|.
T Consensus 186 ~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 186 RVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ECCEEECTTSCEEEEEEEEC
T ss_pred eEEEEEecCCCEEEEEEEEc
Confidence 3221 5678888775
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.2e-11 Score=106.23 Aligned_cols=120 Identities=12% Similarity=0.145 Sum_probs=83.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+.++.. .|+++|.+ .+++.+.++ |+. . ...|..+....++ ++||+|+++-
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 468999999999999999987532 67788887 567666554 331 1 1223222122366 9999999974
Q ss_pred ccccc-----c------------ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 237 LLSDV-----T------------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 237 v~~~~-----~------------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
-+.+. . ..++++.++.++.|+|||||++++.-..+...++...++...|...
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 44322 0 0123578999999999999999998777777788888888888754
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.1e-11 Score=102.53 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=77.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC--CC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT--YP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp--fP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+.... ..+++++|.+ .+++.+.++ |+ +. ...|. . .++ ++ ++||+|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG-S-DLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS-S-CGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH-H-HHHhhcCCCCCCEEEEE
Confidence 35899999999999999987421 1245667776 567666553 33 11 12232 1 244 77 899999998
Q ss_pred ccccccc-----ccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCee
Q 021643 236 FLLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 236 ~v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~~ 287 (309)
....+.. .+-....++.++.|+|||||.+++.. ..+..+.+.+++....|+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 176 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKL 176 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCee
Confidence 5432211 11123579999999999999999975 5456667766666556654
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-11 Score=106.37 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=72.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-ch-----hhhhccccCC---CCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-----MYHDWCESFN---TYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig-----~~~d~ce~~l---pfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.|+..|++++.. .|+++|.+ +|++.+.++.. .. .+...+...+ +|+ .+||+++++
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 358999999999999999988642 56777887 68877766432 00 1111110111 234 566665443
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH----------------------HHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL----------------------EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~----------------------~~~~~i~~l~~~l~W~~~~ 289 (309)
+ ..+|.|+.|+|||||++++.... ...+++..++....|++..
T Consensus 116 -----l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 116 -----L------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKG 180 (232)
T ss_dssp -----G------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred -----H------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEE
Confidence 2 34899999999999999986211 2456677777777787543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=100.17 Aligned_cols=123 Identities=18% Similarity=0.207 Sum_probs=83.3
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--ch-hhhhccccCCCC---C-CCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IG-MYHDWCESFNTY---P-RTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig-~~~d~ce~~lpf---P-~sFDl 231 (309)
+++.. ..+|||+|||. +.+|.+ .|++.+.++.- +. ...|. + .+++ + ++||+
T Consensus 8 ~g~~~--g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~-~-~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 8 FGISA--GQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENI-K-QLLQSAHKESSFDI 66 (176)
T ss_dssp TTCCT--TSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEG-G-GGGGGCCCSSCEEE
T ss_pred cCCCC--CCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEech-h-cCccccCCCCCEeE
Confidence 44444 46899999996 125666 68888888741 11 11221 1 2445 7 99999
Q ss_pred eEeccccccc-cccCCHHHHHHHHhhcccCCeEEEEEeCHH----------HHHHHHHHHHcCCCeeeeec---------
Q 021643 232 LHSSFLLSDV-TQRCDIADVAVEMDRILRPGGYVLVQDTLE----------MINKLKPVLHSLQWSTNIYH--------- 291 (309)
Q Consensus 232 Vh~~~v~~~~-~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------~~~~i~~l~~~l~W~~~~~~--------- 291 (309)
|+|+.+++|+ .+ ...+|.|+.|+|||||++++.+... ..+++.++++.-.+ ..+..
T Consensus 67 V~~~~~l~~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~ 142 (176)
T 2ld4_A 67 ILSGLVPGSTTLH---SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPE 142 (176)
T ss_dssp EEECCSTTCCCCC---CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHH
T ss_pred EEECChhhhcccC---HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHH
Confidence 9999999988 43 5789999999999999999965321 14566666665555 32210
Q ss_pred -----------------ceEEEEEeCcCCCCCC
Q 021643 292 -----------------DQFLVGKKGFWRPTGG 307 (309)
Q Consensus 292 -----------------e~~li~~K~~w~~~~~ 307 (309)
--+++++|+-|..+++
T Consensus 143 ~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~gs~ 175 (176)
T 2ld4_A 143 EVQSVREHLGHESDNLLFVQITGKKPNFEVGSS 175 (176)
T ss_dssp HHHHHHHHTCCCCSSEEEEEEEEECCCSSCCSC
T ss_pred HHHHHHHHhcccCCceEEEEEeccCCcccccCC
Confidence 2268899998877764
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-11 Score=107.46 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=74.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc--chhhhhccccCCCCC--CCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP--RTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP--~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++..|++.+. .++++|.+ .+++.+.++.. .-...|.. ..+|++ ++||+|+++.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGK-GELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSC-SSCCTTCCCCEEEEEEES-----
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchh-hccCCcCCCCEEEEEeCC-----
Confidence 35899999999999999999864 56777887 68888888732 11223322 246776 7999999871
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
+...+|.++.|+|||||.++..........+...+....++
T Consensus 120 ----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~ 160 (226)
T 3m33_A 120 ----GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWD 160 (226)
T ss_dssp ----CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCE
T ss_pred ----CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCe
Confidence 23458999999999999999443222233445555444444
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=103.16 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=76.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC--CC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT--YP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp--fP-~sFDlVh~ 234 (309)
...|||+|||+|.++..|+.. +. .+++++|.+ .++..|.++ |+ +. ...|.. .++ ++ ++||.|++
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~--~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDAD--TLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGG--GHHHHCCTTSCCEEEE
T ss_pred CceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHH--HHHhhcCcCCcCEEEE
Confidence 357999999999999999874 21 256778887 577776654 43 11 122321 133 77 99999987
Q ss_pred ccccccc-----cccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCe
Q 021643 235 SFLLSDV-----TQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 235 ~~v~~~~-----~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~ 286 (309)
+....+. ..+-....+|.++.|+|||||.+++.. ..+..+.+...+....|+
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~ 172 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLL 172 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 6433211 111113679999999999999999875 555555655555544554
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-11 Score=109.75 Aligned_cols=102 Identities=13% Similarity=0.075 Sum_probs=72.7
Q ss_pred CCCeEEEeCCcc---hHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC----cc-hhhhhccccC---------CCCC
Q 021643 166 SVRNVMDMNASY---GGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG----LI-GMYHDWCESF---------NTYP 226 (309)
Q Consensus 166 ~~r~VLD~GCG~---G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg----li-g~~~d~ce~~---------lpfP 226 (309)
..++|||+|||+ |.++..+... +- ..|+.+|.+ .|++.+.++- -+ -...|..+.. -.++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCC
Confidence 457999999999 9887666542 21 246777876 6888887652 11 1111211100 1255
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.+||+|+++.+|+|+++. +...+|.|+.|+|||||+|++.+..
T Consensus 155 ~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 699999999999999864 6889999999999999999998743
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-11 Score=107.10 Aligned_cols=128 Identities=16% Similarity=0.344 Sum_probs=86.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|+.. +. ..++++|.+ .+++.+.++ |+ +. ...|+ ..+++ ++||+|+++-
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~---~~~~~~~~fD~Iv~np 184 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FSALAGQQFAMIVSNP 184 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TGGGTTCCEEEEEECC
T ss_pred CCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcch---hhhcccCCccEEEECC
Confidence 358999999999999999853 22 256777887 577777654 33 11 12232 22455 8999999983
Q ss_pred -------------cccccccc---------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee-ee---
Q 021643 237 -------------LLSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN-IY--- 290 (309)
Q Consensus 237 -------------v~~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~-~~--- 290 (309)
++.|.+.. .....++.++.|+|||||++++.......+.++++++...|+.. ..
T Consensus 185 Py~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~ 264 (276)
T 2b3t_A 185 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY 264 (276)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred CCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecC
Confidence 33332211 13578999999999999999998765556677777777667532 21
Q ss_pred --cceEEEEEe
Q 021643 291 --HDQFLVGKK 299 (309)
Q Consensus 291 --~e~~li~~K 299 (309)
.+++++++|
T Consensus 265 ~g~~r~~~~~~ 275 (276)
T 2b3t_A 265 GDNERVTLGRY 275 (276)
T ss_dssp TSSEEEEEEEC
T ss_pred CCCCcEEEEEE
Confidence 567777764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-10 Score=103.24 Aligned_cols=130 Identities=18% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCC--C-CCCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNT--Y-PRTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lp--f-P~sFDlVh~ 234 (309)
...+|||+|||+|..+..|+.. +- ..|+.+|.+ .++.++.++ |+ +..++.-.+...+ . .++||+|+|
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 3468999999999998888763 22 245677776 567666553 44 2222211222221 2 389999998
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---HHHHHHHHHHHHcCCCeeeee----------cceEEEEEeCc
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTNIY----------HDQFLVGKKGF 301 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~~~----------~e~~li~~K~~ 301 (309)
+.+ .++..++.++.|+|||||++++... .+.+..+...++.+.++.... ...+++.+|.-
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~~~k~~ 230 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVVLEKTA 230 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEEEEECS
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEEEEeCC
Confidence 643 2367799999999999999988653 456666777777777765322 23456677765
Q ss_pred CCC
Q 021643 302 WRP 304 (309)
Q Consensus 302 w~~ 304 (309)
.++
T Consensus 231 ~t~ 233 (249)
T 3g89_A 231 PTP 233 (249)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-11 Score=102.42 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..++.++. ..|+++|.+ .+++.+.++ |+ +. ...|..+....++ ++||+|+++..
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 35899999999999998777653 245667776 577766654 32 11 1122211111255 89999999987
Q ss_pred cccccccCCHHHHHHHHhh--cccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDR--ILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~~ 270 (309)
+++.. .+...++.++.| +|||||.+++....
T Consensus 123 ~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNVDS--ADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCcch--hhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 76542 246789999999 99999999997653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-11 Score=112.69 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=67.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHH--hcCcc----hhhhhccccCCCCCCCcceeEecccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIF--DRGLI----GMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~--eRgli----g~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
.+..+|||+|||+|.++..|++.... ..++.+|.+.++..+. +.++. -..+|. +.++| +||+|+++.++
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~---~~~~p-~~D~v~~~~vl 257 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPG-LQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF---LREVP-HADVHVLKRIL 257 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTT-EEEEEEECHHHHTTCCCCCGGGTTSEEEEECCT---TTCCC-CCSEEEEESCG
T ss_pred cCCceEEEECCccCHHHHHHHHHCCC-CEEEEecCHHHhhcccccccCCCCCeEEEecCC---CCCCC-CCcEEEEehhc
Confidence 44679999999999999999873211 1344555553333100 01221 112232 24667 99999999999
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+.+. +...+|.++.|+|||||+++|.|.
T Consensus 258 h~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 258 HNWGDE-DSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp GGSCHH-HHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred cCCCHH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998752 346899999999999999999863
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=100.44 Aligned_cols=107 Identities=11% Similarity=0.074 Sum_probs=73.1
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc--chh-hhhccccCCCCC-CCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IGM-YHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~-~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
.+|||+|||+|.++..|+.. +. ..++.+|.+ .+++.+.++ |+ +.. ..|. + ..+ + ++||+|+++.+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~-~~~-~~~~~D~i~~~~~ 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV-E-EFP-SEPPFDGVISRAF 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT-T-TSC-CCSCEEEEECSCS
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch-h-hCC-ccCCcCEEEEecc
Confidence 58999999999999998864 21 245666766 566666553 43 111 1222 1 122 4 89999998642
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
.++..++.++.|+|||||++++......-++++.+.+ .|+..
T Consensus 142 -------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~ 183 (207)
T 1jsx_A 142 -------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVE 183 (207)
T ss_dssp -------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEE
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCcee
Confidence 2367899999999999999999866555556666665 67653
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=110.95 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=86.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCC--CCCCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNT--YPRTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lp--fP~sFDlVh~ 234 (309)
..+|||+|||+|.++..|++. +.. ++.+|.+.+++.+.++ ++. -..+|.. ..+ +|+.||+|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~D~v~~ 254 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLT---GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLL--DARNFEGGAADVVML 254 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTT--CGGGGTTCCEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCe---EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcc--cCcccCCCCccEEEE
Confidence 679999999999999999874 232 3444555566655543 431 1222321 123 4578999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-------H--------------------HHHHHHHHHHcCCCee
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------E--------------------MINKLKPVLHSLQWST 287 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------~--------------------~~~~i~~l~~~l~W~~ 287 (309)
+.+++|+.+ .+...+|.++.|+|||||+++|.|.. . ..+++++++++-.++.
T Consensus 255 ~~vlh~~~~-~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (352)
T 3mcz_A 255 NDCLHYFDA-REAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333 (352)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred ecccccCCH-HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence 999999864 23578999999999999999997621 0 1334566666666665
Q ss_pred eee---cceEEEEEeC
Q 021643 288 NIY---HDQFLVGKKG 300 (309)
Q Consensus 288 ~~~---~e~~li~~K~ 300 (309)
... ...+++++|+
T Consensus 334 ~~~~~g~~~l~~a~kp 349 (352)
T 3mcz_A 334 GERSIGRYTLLIGQRS 349 (352)
T ss_dssp EEEEETTEEEEEEECC
T ss_pred eeeccCceEEEEEecC
Confidence 432 4567888885
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=105.18 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-chhh-hhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMY-HDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~-~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++.++++.+. .+.++|.+ .+++.+.++ |+ +... .+.. .++| ++||+|+++...
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~---~~~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE---AALPFGPFDLLVANLYA 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH---HHGGGCCEEEEEEECCH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChh---hcCcCCCCCEEEECCcH
Confidence 36899999999999999988765 56677776 577776654 33 1111 1211 1366 899999998655
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~ 289 (309)
++ +..++.++.|+|||||++++++. ....+.+.+++++..++...
T Consensus 195 ~~------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~ 240 (254)
T 2nxc_A 195 EL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HH------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEE
Confidence 43 46799999999999999999864 33466777777777777643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=110.13 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCCCCCCcceeE
Q 021643 164 WSSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNTYPRTYDLLH 233 (309)
Q Consensus 164 ~~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lpfP~sFDlVh 233 (309)
..+..+|||+|||+|.++..|++. +. .++.+|.+.+++.+.++ |+. -..+|. +.++|..||+|+
T Consensus 200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~p~~~D~v~ 273 (369)
T 3gwz_A 200 FSGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLERPPVAEEARELLTGRGLADRCEILPGDF---FETIPDGADVYL 273 (369)
T ss_dssp CTTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT---TTCCCSSCSEEE
T ss_pred CccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCC---CCCCCCCceEEE
Confidence 345689999999999999999874 33 33445555566666543 431 122332 356777899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++.+++++.+ .+..++|.++.|+|||||+++|.|
T Consensus 274 ~~~vlh~~~d-~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 274 IKHVLHDWDD-DDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred hhhhhccCCH-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999998864 234579999999999999999976
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-11 Score=105.82 Aligned_cols=88 Identities=17% Similarity=0.261 Sum_probs=66.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhcCcc--hhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDRGLI--GMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eRgli--g~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..+++. +. .++++|.+ .+++.+.+++.. -...|. ..+|++ ++||+|++..+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~--~~~~~~~~~fD~v~~~~~~-- 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRLPFSDTSMDAIIRIYAP-- 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT--TSCSBCTTCEEEEEEESCC--
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch--hhCCCCCCceeEEEEeCCh--
Confidence 468999999999999999886 43 46667777 688888887631 112232 247888 899999986542
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.++.|+.|+|||||.+++.+.
T Consensus 159 --------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 159 --------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp --------CCHHHHHHHEEEEEEEEEEEE
T ss_pred --------hhHHHHHHhcCCCcEEEEEEc
Confidence 158999999999999999864
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.5e-11 Score=110.51 Aligned_cols=99 Identities=27% Similarity=0.463 Sum_probs=69.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccc----hhhhhccccCCCCCCCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLI----GMYHDWCESFNTYPRTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----gli----g~~~d~ce~~lpfP~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|++. ++.+ +.+|.+.+++.+.++ |+. -..+|. +.++|..||+|++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecCHHHHHHHHHHHHhcCCCCceEEEeCCC---CCCCCCCccEEEE
Confidence 34578999999999999999874 3333 334444466665543 331 122232 2356755999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+.+++|+.+. +...+|.++.|+|||||+++|.|..
T Consensus 256 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 256 SFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 9999988642 3457999999999999999998644
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-11 Score=109.82 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=71.1
Q ss_pred CCeEEEeCCcchH----HHHHhhcC-CCE--EEEecccCCc-ccHHHHHhcCc---------------------------
Q 021643 167 VRNVMDMNASYGG----FAAALIDQ-PLW--VMNVVPIDAP-DTLSIIFDRGL--------------------------- 211 (309)
Q Consensus 167 ~r~VLD~GCG~G~----faa~L~~~-~v~--v~~V~p~d~s-~~l~~a~eRgl--------------------------- 211 (309)
..+|+|+|||||. +|..|++. +.. ...|.++|.+ ++|+.|.+.-.
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3579999999998 66666653 210 1278899998 79998876410
Q ss_pred -----------chhhhhccccCCCCC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 212 -----------IGMYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 212 -----------ig~~~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.-..+|.. ..||| +.||+|+|..+++|+.+ ....+++.++++.|||||++++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~--~~~~~~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLL--EKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTT--CSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccC--CCCCCcCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHhCCCcEEEEEe
Confidence 00112322 23565 78999999999998854 345789999999999999999853
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-10 Score=110.44 Aligned_cols=95 Identities=19% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chhh-hhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..+++.+. ..|.++|.+++++.+.++ |+ +... .|. + .+++| ++||+|++..+
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI-E-EVHLPVEKVDVIISEWM 140 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-T-TSCCSCSCEEEEEECCC
T ss_pred CCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeH-H-HhcCCCCcEEEEEEcCc
Confidence 45899999999999999998763 134455555456555543 33 1111 222 1 46888 99999999864
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
..++.+...+..+|.++.|+|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 3333333457789999999999999998
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=102.25 Aligned_cols=126 Identities=13% Similarity=0.231 Sum_probs=81.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCC-CC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNT-YP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lp-fP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|+...- ...|+.+|.+ .+++.+.++ |+ +. ...|. ...++ +. ++||+|++.
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA-LEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG-GGCHHHHTTSCEEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH-HHHHHhhccCCccEEEEc
Confidence 46899999999999999998321 1246667776 566666553 33 11 12222 22344 44 899999976
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----------------HHHHHHHHHH----HHcCCCeeeee--cc
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------------LEMINKLKPV----LHSLQWSTNIY--HD 292 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------------~~~~~~i~~l----~~~l~W~~~~~--~e 292 (309)
... .....++.++.|+|||||++++.+. ......++++ .+.-++..... .+
T Consensus 150 ~~~------~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~d 223 (232)
T 3ntv_A 150 AAK------AQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDD 223 (232)
T ss_dssp TTS------SSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTT
T ss_pred CcH------HHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCC
Confidence 432 3467799999999999999999431 1122333333 34456665444 67
Q ss_pred eEEEEEeC
Q 021643 293 QFLVGKKG 300 (309)
Q Consensus 293 ~~li~~K~ 300 (309)
.+.+++|+
T Consensus 224 G~~i~~k~ 231 (232)
T 3ntv_A 224 GLAISIKG 231 (232)
T ss_dssp CEEEEEEC
T ss_pred ceEEEEEC
Confidence 88888884
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-10 Score=108.74 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+. ..|.++|.+++++.+.++ |+ +.....-.+ .+++| ++||+|++..+.
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE-DVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTT-TSCCSSSCEEEEEECCCB
T ss_pred CCEEEEecCccHHHHHHHHHCCC--CEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchh-hccCCCCcccEEEEeCch
Confidence 35899999999999999988763 134455555455555443 43 111211111 36788 999999998665
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
.++.+...+..++.+++|+|||||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 5555555688999999999999999973
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-11 Score=111.75 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc-CcchhhhhccccCCCCCCCcceeEecccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR-GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR-glig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
+..+|||+|||+|.++..|+++... ..++.+|.+.+++.+.+. ++.-..+|. +-++|. ||+|+++.+++|+.+.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~~~-~D~v~~~~~lh~~~d~ 283 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPL-IKGINFDLPQVIENAPPLSGIEHVGGDM---FASVPQ-GDAMILKAVCHNWSDE 283 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT-CEEEEEECHHHHTTCCCCTTEEEEECCT---TTCCCC-EEEEEEESSGGGSCHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCC-CeEEEeChHHHHHhhhhcCCCEEEeCCc---ccCCCC-CCEEEEecccccCCHH
Confidence 4579999999999999999874211 123344444455544332 222222332 225666 9999999999998752
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...+|.++.|+|||||+++|.|
T Consensus 284 -~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 284 -KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEEE
Confidence 23489999999999999999985
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-10 Score=108.89 Aligned_cols=97 Identities=19% Similarity=0.360 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhc----Ccch----hhhhccccCCCCCCCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDR----GLIG----MYHDWCESFNTYPRTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eR----glig----~~~d~ce~~lpfP~sFDlVh~ 234 (309)
.+..+|||+|||+|.++..|+++ +. .++.+|.+.+++.+.++ |+.. ..+|.. ..|+|. +|+|++
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~-~D~v~~ 262 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY--KESYPE-ADAVLF 262 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTT--TSCCCC-CSEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccc--cCCCCC-CCEEEE
Confidence 34579999999999999999874 33 33444555567666654 4321 222321 235553 499999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.+++|+.+ .+...+|.++.|+|||||+++|.|
T Consensus 263 ~~vlh~~~d-~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 263 CRILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp ESCGGGSCH-HHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred echhccCCH-HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999999864 346789999999999999999887
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=105.05 Aligned_cols=113 Identities=13% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
..+|||+|||+|.|+..+++.+.. .|.++|.+ .+++.+.++ |+.. ...|. . ..+.+++||+|+++..
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~-~-~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN-R-DFPGENIADRILMGYV 201 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT-T-TCCCCSCEEEEEECCC
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH-H-HhcccCCccEEEECCc
Confidence 358999999999999999886542 46777887 577776654 4421 11221 1 1222589999988633
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH-------HHHHHHHHHHHcCCCeeeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-------EMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-------~~~~~i~~l~~~l~W~~~~~ 290 (309)
. +...++.++.|+|||||++++.+.. +..+++.+.++...|+....
T Consensus 202 ~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 202 V-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred h-------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 2 2245899999999999999997643 45788889999999987663
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=108.70 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chhh-hhccccCCCCCCCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~~-~d~ce~~lpfP~sFDlVh~~~v 237 (309)
...+|||+|||+|.++..+++.+. ..|.++|.+++++.+.++ |+ +..+ .|. + .+++|++||+|++..+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~D~Iv~~~~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSV-E-DISLPEKVDVIISEWM 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCG-G-GCCCSSCEEEEEECCC
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECch-h-hcCcCCcceEEEEcCh
Confidence 346899999999999999998764 134455555555555443 43 1222 232 2 3567799999999765
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+++.+...+..++.+++|+|||||.+++..
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 5555444568889999999999999998853
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.2e-11 Score=101.28 Aligned_cols=97 Identities=11% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcCcchhhhhccccCCC---------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT--------------------- 224 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lp--------------------- 224 (309)
..+|||+|||+|+++..|+++ +-....|+++|.+.+.. ..++.-...|.. ..+
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~---~~~v~~~~~d~~--~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP---IPNVYFIQGEIG--KDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC---CTTCEEEECCTT--TTSSCCC-----------CHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC---CCCceEEEcccc--chhhhhhccccccccccchhhHHH
Confidence 358999999999999999874 20002344555543211 012211112211 122
Q ss_pred ----CC-CCcceeEeccccccccc-cCC-------HHHHHHHHhhcccCCeEEEEEe
Q 021643 225 ----YP-RTYDLLHSSFLLSDVTQ-RCD-------IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 225 ----fP-~sFDlVh~~~v~~~~~~-~~~-------~~~~L~Em~RVLRPGG~lii~D 268 (309)
++ ++||+|+|+..+++... ..+ ...++.++.|+|||||.+++..
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 57 89999999876654210 001 1248999999999999999864
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-10 Score=100.53 Aligned_cols=97 Identities=9% Similarity=0.103 Sum_probs=68.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc----ch-hhhhccccCCC-CC-CC-cceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL----IG-MYHDWCESFNT-YP-RT-YDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl----ig-~~~d~ce~~lp-fP-~s-FDlVh~ 234 (309)
.+|||+|||+|.++..++.++. ..|+++|.+ .+++.+.++ |+ +. ...|. +..++ ++ ++ ||+|++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS-LDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH-HHHTTSCCSSCCEEEEEE
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH-HHHHHhhccCCCCCEEEE
Confidence 5899999999999998776653 256778887 677777654 32 11 11222 12233 34 78 999999
Q ss_pred ccccccccccCCHHHHHHHH--hhcccCCeEEEEEeCHH
Q 021643 235 SFLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTLE 271 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~~ 271 (309)
+..++ ......++.++ .|+|||||.+++.....
T Consensus 132 ~~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87754 23467789999 78999999999987654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.4e-10 Score=92.36 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=60.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCcccHHHHHhcCcchhhhhccccCCC--------CC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT--------YP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lp--------fP-~sFDlVh~ 234 (309)
..+|||+|||+|.++..+++. +..+ ..+|.+.+++. ..+.....|.. ..+ ++ ++||+|++
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v---~~~D~~~~~~~---~~~~~~~~d~~--~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRI---IACDLLPMDPI---VGVDFLQGDFR--DELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEE---EEEESSCCCCC---TTEEEEESCTT--SHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeE---EEEECcccccc---CcEEEEEcccc--cchhhhhhhccCCCCceeEEEE
Confidence 458999999999999998875 2333 33333322111 11211122221 123 67 89999999
Q ss_pred cccccccccc--CC------HHHHHHHHhhcccCCeEEEEEeC
Q 021643 235 SFLLSDVTQR--CD------IADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 235 ~~v~~~~~~~--~~------~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+..+++..+. .. ...++.++.|+|||||.+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8887654321 00 15799999999999999999754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=101.24 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=66.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCCCCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYPRTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..|++.+. .++.+|.+ .+++.+.++. +.-...|. +..++.+++||+|+++.+++|
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-TLGYEEEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-GGCCGGGCCEEEEEESSBBSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc-ccccccCCCccEEEECCcHHH
Confidence 45899999999999999988653 56667776 5777777662 21122232 112221289999999999987
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+. .++.|+|||||++++....
T Consensus 147 ~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 147 LL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CC---------HHHHHTEEEEEEEEEEECS
T ss_pred HH---------HHHHHHcCCCcEEEEEEcC
Confidence 64 3789999999999998654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=100.68 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=80.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCC-C--CCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTY-P--RTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpf-P--~sFDl 231 (309)
..+|||+|||+|.++..|++. +. .|+.+|.+ .+++.+.++ |+. . ...|..+ .++. + ++||+
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~-~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ-SLESLGECPAFDL 139 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH-HHHTCCSCCCCSE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHhcCCCCCeEE
Confidence 468999999999999999885 33 45666776 567766654 431 1 1122211 2332 2 59999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHH----HHHcCCCeeeee-----
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY----- 290 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~----- 290 (309)
|++.... .+...++.++.|+|||||++++.+.. .....+++ +...-+|+....
T Consensus 140 V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~ 213 (248)
T 3tfw_A 140 IFIDADK------PNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGT 213 (248)
T ss_dssp EEECSCG------GGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECST
T ss_pred EEECCch------HHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCC
Confidence 9986432 23567999999999999999987532 12223333 334556766543
Q ss_pred --cceEEEEEeC
Q 021643 291 --HDQFLVGKKG 300 (309)
Q Consensus 291 --~e~~li~~K~ 300 (309)
.+.+.+++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 2788888886
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=120.50 Aligned_cols=99 Identities=10% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----------Cc--ch-hhhhccccCCCCC-CCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----------GL--IG-MYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----------gl--ig-~~~d~ce~~lpfP-~sFDl 231 (309)
..+|||+|||+|.++..|++.+.....|+++|.+ .+++.|.+| |+ +. ...|. ..++++ ++||+
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa--~dLp~~d~sFDl 799 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI--LEFDSRLHDVDI 799 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT--TSCCTTSCSCCE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch--HhCCcccCCeeE
Confidence 4689999999999999999875211356777887 688888762 32 11 12232 247888 99999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+|..+++|+.+. ....++.++.|+|||| .+++++.
T Consensus 800 VV~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 800 GTCLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EEEESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EEEeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEec
Confidence 9999999999752 3456899999999999 7777653
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-10 Score=110.11 Aligned_cols=97 Identities=14% Similarity=0.245 Sum_probs=68.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEeccccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
.+..+|||+|||+|.++..|++. +.. ++.+|.+.+++.+.++. +.-..+|. +-|+|.. |+|+++.++||+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSIN---AINFDLPHVIQDAPAFSGVEHLGGDM---FDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCE---EEEEehHHHHHhhhhcCCCEEEecCC---CCCCCCC-CEEEEechhhcC
Confidence 44679999999999999999873 232 34445554555544332 22223342 2377843 999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+ .+...+|+++.|+|||||+++|.|.
T Consensus 275 ~~-~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 275 SD-EHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 75 3456899999999999999999763
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=106.19 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=67.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----C-cchhhhhccc-cCCCCC-CCc
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----G-LIGMYHDWCE-SFNTYP-RTY 229 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----g-lig~~~d~ce-~~lpfP-~sF 229 (309)
.+.+++| .+|||+|||+|.++..|++. +-. -.|.++|.+ .|++.+.++ + +..+..+.+. ...+++ .+|
T Consensus 72 ~l~ikpG--~~VldlG~G~G~~~~~la~~VG~~-G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~v 148 (233)
T 4df3_A 72 ELPVKEG--DRILYLGIASGTTASHMSDIIGPR-GRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGV 148 (233)
T ss_dssp CCCCCTT--CEEEEETCTTSHHHHHHHHHHCTT-CEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCE
T ss_pred hcCCCCC--CEEEEecCcCCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceE
Confidence 4556554 59999999999999999873 110 134556666 577666543 2 2222222211 135666 999
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+|++. +.|. .+...++.|+.|+|||||+++|.+
T Consensus 149 DvVf~d--~~~~---~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 149 DGLYAD--VAQP---EQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEEC--CCCT---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEe--ccCC---hhHHHHHHHHHHhccCCCEEEEEE
Confidence 999875 3222 245779999999999999999974
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=97.58 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=73.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|++. +. .+..+|.+ .+++.|.++ |+.. ...|. ..+++ ++||+|+
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~D~v~ 167 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI---YEGIEEENVDHVI 167 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG---GGCCCCCSEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch---hhccCCCCcCEEE
Confidence 468999999999999999876 33 45666776 577777665 4321 22232 24577 8999998
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCC
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQ 284 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~ 284 (309)
++ .+ +...++.++.|+|||||.+++... .+...++.+.++...
T Consensus 168 ~~-----~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 168 LD-----LP---QPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp EC-----SS---CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred EC-----CC---CHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 74 22 234589999999999999998764 455666666666555
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-10 Score=107.92 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=67.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhc----Cc---chh-hhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDR----GL---IGM-YHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eR----gl---ig~-~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+. ..|.++|.++++..+.++ |+ +.. ..|. + .+++|++||+|++..++
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~-~-~~~~~~~~D~Ivs~~~~ 126 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV-E-EVSLPEQVDIIISEPMG 126 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCT-T-TCCCSSCEEEEEECCCB
T ss_pred cCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcch-h-hCCCCCceeEEEEeCch
Confidence 46899999999999999988753 133444444455554433 44 111 1222 1 35667889999999888
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+.+ .++...+.++.|+|||||.+++.
T Consensus 127 ~~~~~-~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 127 YMLFN-ERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TTBTT-TSHHHHHHHGGGGEEEEEEEESC
T ss_pred hcCCh-HHHHHHHHHHHhhcCCCeEEEEe
Confidence 88763 45678899999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-10 Score=99.28 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=79.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc---hh-hhhccccCCC-----CC-CC
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI---GM-YHDWCESFNT-----YP-RT 228 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli---g~-~~d~ce~~lp-----fP-~s 228 (309)
..+|||+|||+|.++..|+.. +. .|+.+|.+ .+++.+.++ |+. .. ..|..+ .++ +. ++
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD-TLAELIHAGQAWQ 140 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH-HHHHHHTTTCTTC
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH-HHHHhhhccCCCC
Confidence 458999999999999999885 32 45666776 566666554 431 11 112111 111 12 78
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHH----HHHcCCCeeeee--
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY-- 290 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~-- 290 (309)
||+|++.... .+...++.++.|+|||||++++.|.. .....++. +...-+++....
T Consensus 141 fD~v~~~~~~------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 214 (225)
T 3tr6_A 141 YDLIYIDADK------ANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI 214 (225)
T ss_dssp EEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred ccEEEECCCH------HHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 9999865432 23567999999999999999997632 11223333 334445665544
Q ss_pred cceEEEEEeC
Q 021643 291 HDQFLVGKKG 300 (309)
Q Consensus 291 ~e~~li~~K~ 300 (309)
.+.+++++|.
T Consensus 215 ~dG~~~~~k~ 224 (225)
T 3tr6_A 215 GDGLTLARKK 224 (225)
T ss_dssp TTCEEEEEEC
T ss_pred CCccEEEEEC
Confidence 6788888874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-10 Score=99.32 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=65.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.+. .+..+|.+ .+++.+.++ |+ +. ...|. . ..+.+ ++||+|+++.+
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG-W-QGWQARAPFDAIIVTAA 152 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-G-GCCGGGCCEEEEEESSB
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc-c-cCCccCCCccEEEEccc
Confidence 46899999999999999988753 45666776 577776654 32 11 12232 1 23344 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
++|+.+ ++.|+|||||++++....
T Consensus 153 ~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 988763 689999999999997654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.4e-10 Score=99.42 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC--C-CEEEEecccCCc-c----cHHHHHhc-Ccchhhhhcccc-CCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--P-LWVMNVVPIDAP-D----TLSIIFDR-GLIGMYHDWCES-FNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~-v~v~~V~p~d~s-~----~l~~a~eR-glig~~~d~ce~-~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++. + . .|.++|.+ . +++.+.++ ++.-...|..+. .++++ ++||+|+++
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~---~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDG---LVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 458999999999999999875 2 2 34555665 2 45555553 222222232111 14556 899999986
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.. .......++.++.|+|||||++++.-..
T Consensus 155 ~~-----~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 155 VA-----QPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp CC-----CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CC-----CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 43 1122345688999999999999996443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-10 Score=98.44 Aligned_cols=115 Identities=21% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH----H----hcCc--ch-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----F----DRGL--IG-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a----~----eRgl--ig-~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|++..- ...++++|.+ .+++.+ . .+++ +. ...|. + .+||+ ++ |.++
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~-~-~l~~~~~~-d~v~ 103 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA-E-RLPPLSGV-GELH 103 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS-T-TCCSCCCE-EEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch-h-hCCCCCCC-CEEE
Confidence 46899999999999999998520 1356677777 566642 2 1232 11 12232 2 47888 66 7776
Q ss_pred ecc---ccc--cccccCCHHHHHHHHhhcccCCeEEEEEeC------------------HH-HHHHHHHHHHcCCCeee
Q 021643 234 SSF---LLS--DVTQRCDIADVAVEMDRILRPGGYVLVQDT------------------LE-MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 234 ~~~---v~~--~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------------~~-~~~~i~~l~~~l~W~~~ 288 (309)
... .++ |+.+ ...+|.|+.|+|||||.+++... .. ..+.++.++..-.|+..
T Consensus 104 ~~~~~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGS---SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp EESCCHHHHHHHHTS---SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred EEccchhhhhhhhcc---HHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 332 111 3332 35699999999999999999631 12 23347777777777654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-10 Score=102.69 Aligned_cols=124 Identities=12% Similarity=0.128 Sum_probs=81.3
Q ss_pred CeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc-h----hhhhccccCC-CCC-CCccee
Q 021643 168 RNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI-G----MYHDWCESFN-TYP-RTYDLL 232 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli-g----~~~d~ce~~l-pfP-~sFDlV 232 (309)
.+|||+|||+|.++..|++. +. .|+.+|.+ .+++.+.++ |+. . ...|.. ..+ .++ ++||+|
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~-~~l~~~~~~~fD~V 133 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL-DVMSRLANDSYQLV 133 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH-HHGGGSCTTCEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH-HHHHHhcCCCcCeE
Confidence 38999999999999998863 33 45666776 566666543 332 1 111211 123 354 899999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHHHcCCCee----eee--cceE
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWST----NIY--HDQF 294 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~----~~~--~e~~ 294 (309)
++.... .+...++.++.|+|||||++++.|.. .....++++.+.++.+. .+. .+.+
T Consensus 134 ~~d~~~------~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl 207 (221)
T 3dr5_A 134 FGQVSP------MDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGL 207 (221)
T ss_dssp EECCCT------TTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCE
T ss_pred EEcCcH------HHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchH
Confidence 886433 23567899999999999999996421 22334566665555553 222 7889
Q ss_pred EEEEeCc
Q 021643 295 LVGKKGF 301 (309)
Q Consensus 295 li~~K~~ 301 (309)
++++|.+
T Consensus 208 ~~~~~~~ 214 (221)
T 3dr5_A 208 TVVTKAL 214 (221)
T ss_dssp EEEEECC
T ss_pred HHHHHHH
Confidence 9999976
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=109.15 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEeccccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
.+..+|||+|||+|.++..|+++ +.. ++..|.+.+++.+.++. +.-..+|. +-|+|.. |+|+++.++||+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~D~---~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDLPHVISEAPQFPGVTHVGGDM---FKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCT---TTCCCCC-SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecCHHHHHhhhhcCCeEEEeCCc---CCCCCCC-CEEEehHHhccC
Confidence 34679999999999999999873 232 34445554555544332 22223342 2378843 999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+ .+...+|+++.|+|||||+++|.|.
T Consensus 273 ~d-~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 273 SD-QHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CH-HHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 64 3467899999999999999999763
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=95.40 Aligned_cols=96 Identities=13% Similarity=0.155 Sum_probs=64.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCC-CC---CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNT-YP---RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lp-fP---~sFDlVh~~ 235 (309)
..+|||+|||+|.++..++..+.. +.++|.+ .+++.+.++ ++ +. ...|..+ .++ ++ .+||+|+++
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV-FLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH-HHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHH-HHHhhhccCCceEEEEEC
Confidence 358999999999999999987643 6777887 577776653 22 11 1112111 122 12 389999998
Q ss_pred cccccccccCCHHHHHHHHh--hcccCCeEEEEEeCHH
Q 021643 236 FLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQDTLE 271 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~~~ 271 (309)
..++ .+ .+.++.++. |+|||||.+++.....
T Consensus 118 ~~~~--~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA--MD---LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT--SC---TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCCc--hh---HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 7765 22 234666666 9999999999986543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-10 Score=99.46 Aligned_cols=94 Identities=20% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hh-hhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GM-YHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~-~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.--....|+.+|.+ .+++.+.++ |+. .. ..|. ...++.. + ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP-LGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH-HHHHTTCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH-HHHhccCCC-CCEEEEcC
Confidence 3689999999999999998751001245666766 566666543 331 11 1121 1134544 7 99999873
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. ..+...++.++.|+|||||++++.+
T Consensus 135 ~------~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D------VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 2346789999999999999999865
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-10 Score=101.76 Aligned_cols=127 Identities=9% Similarity=0.071 Sum_probs=90.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.+|..++...-.+ .+.++|.+ .|++++.++ |+.. .+.|.- ..+.|.+||+|.+..++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~--~~~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE--SDVYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH--HHHTTSEEEEEEEETCHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc--ccCCCCCcChhhHhhHHH
Confidence 5699999999999999997753233 67888998 688888765 3321 112211 123349999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HHHHHHHHHHHHcCCCeeeee---cceEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTNIY---HDQFLVGKK 299 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~~~---~e~~li~~K 299 (309)
|+.+.. .++..+.+.|||||.||-.+. ..+.+..++.+..=.|.+... .|-+.|.+|
T Consensus 127 lL~~~~---~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~nEl~y~~~~ 197 (200)
T 3fzg_A 127 VLKQQD---VNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIGNELVYITSG 197 (200)
T ss_dssp HHHHTT---CCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEETTEEEEEECC
T ss_pred hhhhhH---HHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeCceEEEEEec
Confidence 995433 367799999999999999882 135677777777777876544 444444443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.99 E-value=3.9e-10 Score=101.02 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=69.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------------Cc--ch-hhhhccccCCC--CC-C
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------------GL--IG-MYHDWCESFNT--YP-R 227 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------------gl--ig-~~~d~ce~~lp--fP-~ 227 (309)
..+|||+|||+|.|+..|+..... .+++++|.+ .+++.+.++ |+ +. ...|. ...++ |+ +
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~-~~~l~~~~~~~ 127 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA-MKFLPNFFEKG 127 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT-TSCGGGTSCTT
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH-HHHHHHhcccc
Confidence 358999999999999999875311 246667776 567666543 43 11 11221 12345 77 9
Q ss_pred CcceeEecccccccc-----ccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHH
Q 021643 228 TYDLLHSSFLLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLH 281 (309)
Q Consensus 228 sFDlVh~~~v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~ 281 (309)
+||.|+...--.+.. .+.-...++.++.|+|||||.+++. |..+..+.+.+.+.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~ 187 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLE 187 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHH
Confidence 999997542111100 0000147999999999999999885 55555555554443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-10 Score=108.78 Aligned_cols=97 Identities=18% Similarity=0.320 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhc-CcchhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDR-GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eR-glig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
+..+|||+|||+|.++..|+++ +- ..++.+|.+.+++.+.+. ++.-..+|. +-++|. ||+|+++.+++|+.+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~p~-~D~v~~~~~lh~~~d 261 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPK--LKCIVFDRPQVVENLSGSNNLTYVGGDM---FTSIPN-ADAVLLKYILHNWTD 261 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEECHHHHTTCCCBTTEEEEECCT---TTCCCC-CSEEEEESCGGGSCH
T ss_pred cCceEEEeCCCccHHHHHHHHHCCC--CeEEEeeCHHHHhhcccCCCcEEEeccc---cCCCCC-ccEEEeehhhccCCH
Confidence 3579999999999999999864 21 134445554455554432 221122332 125565 999999999999875
Q ss_pred cCCHHHHHHHHhhcccC---CeEEEEEeC
Q 021643 244 RCDIADVAVEMDRILRP---GGYVLVQDT 269 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRP---GG~lii~D~ 269 (309)
. +...+|.++.|+||| ||+++|.|.
T Consensus 262 ~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 262 K-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp H-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred H-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 2 344899999999999 999999863
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-10 Score=107.02 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=74.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+|||+|.++..+++.+.. ..++.+|.+ .+++.+.++ ++...+. +.....++ ++||+|+++..|++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~--~~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVF--ASNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEE--ECSTTTTCCSCEEEEEECCCCCS
T ss_pred CCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEE--EccccccccCCeeEEEECCCccc
Confidence 358999999999999999875311 145666776 577776654 3321111 11234566 99999999998875
Q ss_pred cc--ccCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHH
Q 021643 241 VT--QRCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLH 281 (309)
Q Consensus 241 ~~--~~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~ 281 (309)
.. +......++.++.|+|||||.+++.... ..-..++.+..
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~ 318 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFG 318 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHS
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcC
Confidence 21 1234678999999999999999997542 23344444443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.3e-10 Score=100.63 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc-----Cc--ch-hhhhccccCCCCC-CCccee
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----GL--IG-MYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR-----gl--ig-~~~d~ce~~lpfP-~sFDlV 232 (309)
+..+|||+|||+|.++..|++. +. .+..+|.+ .+++.+.++ |+ +. ...|. ..+++ ++||+|
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~~fD~V 183 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADFISDQMYDAV 183 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTCCCSCCEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hccCcCCCccEE
Confidence 3468999999999999999875 33 45667776 577766654 42 11 12232 23677 899999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCe
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS 286 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~ 286 (309)
++ |.++ ...+|.++.|+|||||++++.+... ..+++.+.++...|.
T Consensus 184 i~-----~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 184 IA-----DIPD---PWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 230 (275)
T ss_dssp EE-----CCSC---GGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred EE-----cCcC---HHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCe
Confidence 87 3332 3568999999999999999987654 455665555554443
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-10 Score=100.97 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=57.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-c-cHHHH---Hhc----Ccc--h-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-D-TLSII---FDR----GLI--G-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~-~l~~a---~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|+.... ...|+++|.+ . +++.| .++ |+. . ...| ...+| ..||.|.
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d----~~~l~~~~~d~v~ 99 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAA----AESLPFELKNIAD 99 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCB----TTBCCGGGTTCEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcC----HHHhhhhccCeEE
Confidence 46899999999999999985321 1356778887 4 66665 433 331 1 1112 12234 3445544
Q ss_pred eccccccccc-----cCCHHHHHHHHhhcccCCeEEEE
Q 021643 234 SSFLLSDVTQ-----RCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 234 ~~~v~~~~~~-----~~~~~~~L~Em~RVLRPGG~lii 266 (309)
+..+..+++. ..+...+|.|+.|+|||||++++
T Consensus 100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4333222211 11235689999999999999999
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=104.17 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=90.3
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcC-------cchhhhhccccCCCCC-CCcceeEe
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG-------LIGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRg-------lig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
+..+.++|+|+|||+|.++..|+++.-. +.++-.|.+.+++.+.++- +.-..+| +..-| ..+|++++
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p~-~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD----~~~~~~~~~D~~~~ 250 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGD----FFKDPLPEADLYIL 250 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCSS-CEEEEEECHHHHHHHHHHSCC--CCSEEEEESC----TTTSCCCCCSEEEE
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCCC-ceeEeccCHHHHHHHHHhhhhcccCceeeecCc----cccCCCCCceEEEe
Confidence 3455679999999999999999874211 1233455666777766542 1112233 22224 56899999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--------------H------------HHHHHHHHHHcCCCeee
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------E------------MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~------------~~~~i~~l~~~l~W~~~ 288 (309)
..+||+|++ .+...+|+++.|.|+|||.++|.|.. + ..++.++++++-.|+..
T Consensus 251 ~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v 329 (353)
T 4a6d_A 251 ARVLHDWAD-GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDF 329 (353)
T ss_dssp ESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEE
T ss_pred eeecccCCH-HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceE
Confidence 999999875 34568999999999999999998731 0 13456677766667643
Q ss_pred ee-----cceEEEEEeCcC
Q 021643 289 IY-----HDQFLVGKKGFW 302 (309)
Q Consensus 289 ~~-----~e~~li~~K~~w 302 (309)
-. ...+++++|..-
T Consensus 330 ~v~~~~~~~~~i~ArKgt~ 348 (353)
T 4a6d_A 330 QFKKTGAIYDAILARKGTH 348 (353)
T ss_dssp EEECCSSSCEEEEEECCCC
T ss_pred EEEEcCCceEEEEEEecCc
Confidence 22 346788998653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=103.99 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=82.4
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch------hhhhccccCCCCC-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG------MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig------~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
.+|||+|||+|.++..+++..- ...|+.+|.+ .+++.+.++ |+.. ...| ...+++ ++||+|+|+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D---~~~~~~~~~fD~Ii~n 299 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN---ALSGVEPFRFNAVLCN 299 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECS---TTTTCCTTCEEEEEEC
T ss_pred CeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEech---hhccCCCCCeeEEEEC
Confidence 6899999999999999988520 1245667776 466666543 3311 1122 234677 899999999
Q ss_pred ccccccc--ccCCHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHHcCCCeeeeecceEEEEEeCcC
Q 021643 236 FLLSDVT--QRCDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLHSLQWSTNIYHDQFLVGKKGFW 302 (309)
Q Consensus 236 ~v~~~~~--~~~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~~l~W~~~~~~e~~li~~K~~w 302 (309)
-.|++.. .......++.++.|+|||||.+++... ..+-..++++.. ..+....+.++-|.+-.+=
T Consensus 300 ppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg--~~~~~a~~~~F~V~~~~~~ 368 (375)
T 4dcm_A 300 PPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG--NCTTIATNNKFVVLKAVKL 368 (375)
T ss_dssp CCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS--CCEEEEECSSEEEEEEECC
T ss_pred CCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC--CEEEEeeCCCEEEEEEcCc
Confidence 8887532 122245789999999999999999643 234455555544 2344445666766665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.3e-10 Score=100.66 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=69.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc-------Ccch-----------------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR-------GLIG----------------------- 213 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR-------glig----------------------- 213 (309)
..+|||+|||+|.++..++.. . ...+|.++|.+ .+++.|.++ |+..
T Consensus 52 ~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 52 PVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 468999999999999998875 2 12467888887 577777643 2210
Q ss_pred ------------------h-hhhccccCCCC------C-CCcceeEecccccccccc------CCHHHHHHHHhhcccCC
Q 021643 214 ------------------M-YHDWCESFNTY------P-RTYDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPG 261 (309)
Q Consensus 214 ------------------~-~~d~ce~~lpf------P-~sFDlVh~~~v~~~~~~~------~~~~~~L~Em~RVLRPG 261 (309)
. .+|. ..++ + ++||+|+|+..+.+..+. .....++.++.|+||||
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADV---FDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCT---TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhccccccccccceeeccc---ccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 1 1121 2233 5 589999998766544321 23568999999999999
Q ss_pred eEEEEEeCHH
Q 021643 262 GYVLVQDTLE 271 (309)
Q Consensus 262 G~lii~D~~~ 271 (309)
|++++.+...
T Consensus 208 G~l~~~~~~~ 217 (250)
T 1o9g_A 208 AVIAVTDRSR 217 (250)
T ss_dssp CEEEEEESSS
T ss_pred cEEEEeCcch
Confidence 9999976543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=6.7e-10 Score=107.48 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=76.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+. .|+.+|.+ .+++.+.++ |+ +. ...|. . ..+++ ++||+|+++..|
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~-~-~~~~~~~~fD~Ii~npp~ 308 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDV-D-EALTEEARFDIIVTNPPF 308 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECST-T-TTSCTTCCEEEEEECCCC
T ss_pred CCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcch-h-hccccCCCeEEEEECCch
Confidence 45899999999999999999864 56677777 577766654 32 11 12222 1 24556 899999999888
Q ss_pred ccccc--cCCHHHHHHHHhhcccCCeEEEEEeCH--HHHHHHHHHHH
Q 021643 239 SDVTQ--RCDIADVAVEMDRILRPGGYVLVQDTL--EMINKLKPVLH 281 (309)
Q Consensus 239 ~~~~~--~~~~~~~L~Em~RVLRPGG~lii~D~~--~~~~~i~~l~~ 281 (309)
++... ......++.++.|+|||||.+++.... .+-..+++...
T Consensus 309 ~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 309 HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp CTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred hhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 76321 224678999999999999999997543 23344444443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-10 Score=95.83 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..+++.+. ..+.++|.+ .+++.+.++ |+. . ...|.. ..++.. ++||+|+++.
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE-RAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH-HHHHHBCSCEEEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH-HhHHhhcCCCCEEEECC
Confidence 35899999999999999988753 256777887 577776653 321 1 112221 123433 7899999986
Q ss_pred ccccccccCCHHHHHHHHh--hcccCCeEEEEEeCHH
Q 021643 237 LLSDVTQRCDIADVAVEMD--RILRPGGYVLVQDTLE 271 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D~~~ 271 (309)
.++. ...++++..+. |+|||||.+++.....
T Consensus 109 ~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK----ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SSHH----HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCc----chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 6532 12455677776 9999999999986543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.9e-09 Score=97.26 Aligned_cols=127 Identities=8% Similarity=0.022 Sum_probs=75.9
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEE--EecccCCcccHHHHHhcCcc---hh-hhhccccCCCC------CCCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVM--NVVPIDAPDTLSIIFDRGLI---GM-YHDWCESFNTY------PRTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~--~V~p~d~s~~l~~a~eRgli---g~-~~d~ce~~lpf------P~sFDl 231 (309)
.++|||+|||+|.++..|++. +..+. ++.+.......+.+...|+. .. ..|. ...++. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda-~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA-LDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH-HHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHHHHhhccCCCCEeE
Confidence 468999999999999999873 33332 22222222233444444542 11 1121 112332 478999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHH----HcCCCeeeee--cce
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVL----HSLQWSTNIY--HDQ 293 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~----~~l~W~~~~~--~e~ 293 (309)
|++.... .+...++.++.|+|||||++++.|.. .....++++. +.-+++..+. .+.
T Consensus 140 V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG 213 (242)
T 3r3h_A 140 IFIDADK------TNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADG 213 (242)
T ss_dssp EEEESCG------GGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSC
T ss_pred EEEcCCh------HHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCc
Confidence 9987542 23567899999999999999996532 1222333333 3445655444 678
Q ss_pred EEEEEeC
Q 021643 294 FLVGKKG 300 (309)
Q Consensus 294 ~li~~K~ 300 (309)
+++++|+
T Consensus 214 ~~~~~k~ 220 (242)
T 3r3h_A 214 MFLVQPI 220 (242)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 8888874
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.9e-10 Score=98.28 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=62.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccc--cCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCE--SFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce--~~lpfP~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++. +. ..|.++|.+ .+++.+.++. +.-...|..+ ...+++.+||+|+
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---- 148 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---- 148 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE----
T ss_pred CCEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE----
Confidence 468999999999999999875 31 245666776 5777666542 1111122111 0145558899998
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+++.+......++.++.|+|||||++++.
T Consensus 149 -~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 149 -EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 33333333467899999999999999994
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-10 Score=98.73 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=79.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCC-----CC-CC
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNT-----YP-RT 228 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lp-----fP-~s 228 (309)
..+|||+|||+|.++..|++. +. .|+.+|.+ .+++.|.++ |+. . ...|..+ .++ ++ ++
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~l~~~~~~~~~~~ 134 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD-LIPQLKKKYDVDT 134 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH-HGGGTTTTSCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH-HHHHHHHhcCCCc
Confidence 468999999999999999873 32 45666776 577776653 431 1 1122111 122 23 69
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeeee---------cceE
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY---------HDQF 294 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~---------~e~~ 294 (309)
||+|++....+++.+ ..+++.++ |+|||||++++.|. .++++.++ +.-+++.... .+.+
T Consensus 135 fD~V~~d~~~~~~~~---~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~dG~ 207 (221)
T 3u81_A 135 LDMVFLDHWKDRYLP---DTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVR---GSSSFECTHYSSYLEYMKVVDGL 207 (221)
T ss_dssp CSEEEECSCGGGHHH---HHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHH---HCTTEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEEcCCcccchH---HHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHh---hCCCceEEEcccccccCCCCCce
Confidence 999999877766542 34577777 99999999999764 23444333 3345655433 4677
Q ss_pred EEEEeC
Q 021643 295 LVGKKG 300 (309)
Q Consensus 295 li~~K~ 300 (309)
.++++.
T Consensus 208 ~~~~~~ 213 (221)
T 3u81_A 208 EKAIYQ 213 (221)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 777764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.93 E-value=7e-10 Score=96.85 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=68.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chh-hhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGM-YHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~-~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+|||+|.++..++.++. ..|+.+|.+ .+++.+.++ |+ +.. ..|. +..++++ ++||+|+++..|
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~-~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA-MSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-HHHHSSCCCCEEEEEECCSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-HHHHhhcCCCCCEEEECCCC
Confidence 5899999999999998777653 257788887 677777654 32 111 1221 2235666 899999998665
Q ss_pred ccccccCCHHHHHHHHhh--cccCCeEEEEEeCHH
Q 021643 239 SDVTQRCDIADVAVEMDR--ILRPGGYVLVQDTLE 271 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~R--VLRPGG~lii~D~~~ 271 (309)
+ ......++.++.+ +|||||.+++.....
T Consensus 133 ~----~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R----RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S----TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C----CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 4 1346678888855 699999999987654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=94.85 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=73.9
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc-----Cc--c-hhhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----GL--I-GMYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR-----gl--i-g~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..|++. +. .+..+|.+ .+++.+.++ |. + -...|.. ..+++ ++||+|+
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~--~~~~~~~~~D~v~ 171 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE--EAELEEAAYDGVA 171 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG--GCCCCTTCEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh--hcCCCCCCcCEEE
Confidence 458999999999999999875 33 45566665 567766655 42 1 1222332 24688 8999998
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH-HHHHHHHHHHcCCCe
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE-MINKLKPVLHSLQWS 286 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~-~~~~i~~l~~~l~W~ 286 (309)
++ .+ +...+|.++.|+|||||++++.+... .+.++...++...|.
T Consensus 172 ~~-----~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 172 LD-----LM---EPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp EE-----SS---CGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred EC-----Cc---CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 73 22 23468999999999999999987643 555555556555554
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=92.75 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC-C--CEEEEecccCCc-ccHHHHHhc-----Ccchhhhhcccc--CCCCCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-P--LWVMNVVPIDAP-DTLSIIFDR-----GLIGMYHDWCES--FNTYPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~--v~v~~V~p~d~s-~~l~~a~eR-----glig~~~d~ce~--~lpfP~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++. + . .|.++|.+ .+++.+.++ ++.-...|..+. ..+++.+||+|+++
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 458999999999999999864 1 3 34555665 455544332 221112222111 12334789999976
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.. .......++.++.|+|||||++++.
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 43 1122334599999999999999986
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.1e-11 Score=104.49 Aligned_cols=93 Identities=15% Similarity=0.247 Sum_probs=67.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++ |+ +. ...|.. .++ + ++||+|+++.
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~--~~~-~~~~~D~v~~~~ 152 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL--LLA-SFLKADVVFLSP 152 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH--HHG-GGCCCSEEEECC
T ss_pred CCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChH--Hhc-ccCCCCEEEECC
Confidence 46899999999999999999863 56677777 577766544 33 11 112221 123 5 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+++..+. ...+.|+.|+|||||++++..
T Consensus 153 ~~~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 153 PWGGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp CCSSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred CcCCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 89886543 236789999999999977654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=95.12 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCC-CC----CCc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNT-YP----RTY 229 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lp-fP----~sF 229 (309)
..+|||+|||+|.++.+|++. +. .++.+|.+ .+++.+.++ |+. . ...|..+ .++ ++ ++|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~f 134 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD-SLQQIENEKYEPF 134 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH-HHHHHHHTTCCCC
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHHHHhcCCCCc
Confidence 468999999999999999985 33 45666766 566666543 431 1 1112111 111 21 579
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+|++..... ....++.++.|+|||||++++.+
T Consensus 135 D~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 135 DFIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp SEEEECSCGG------GHHHHHHHHHHTCCTTCEEEEES
T ss_pred CEEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999875432 34679999999999999999865
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-10 Score=106.10 Aligned_cols=95 Identities=17% Similarity=0.286 Sum_probs=65.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHHh-cCcchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIFD-RGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~e-Rglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
+..+|||+|||+|.++..|+++ +.. ++.+|.+.+++.+.+ .++.-..+|. +-++| +||+|+++.+++|+.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~v~~~~~d~---~~~~~-~~D~v~~~~vlh~~~ 265 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLK---CTVFDQPQVVGNLTGNENLNFVGGDM---FKSIP-SADAVLLKWVLHDWN 265 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECHHHHSSCCCCSSEEEEECCT---TTCCC-CCSEEEEESCGGGSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCe---EEEeccHHHHhhcccCCCcEEEeCcc---CCCCC-CceEEEEcccccCCC
Confidence 3468999999999999999874 232 333444444444332 1222222332 22555 599999999999987
Q ss_pred ccCCHHHHHHHHhhcccC---CeEEEEEe
Q 021643 243 QRCDIADVAVEMDRILRP---GGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRP---GG~lii~D 268 (309)
+. +...+|.++.|+||| ||+++|.|
T Consensus 266 d~-~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 266 DE-QSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp HH-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred HH-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 52 244899999999999 99999976
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=97.13 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-cc----HHHHHhc-CcchhhhhccccC--CCCCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DT----LSIIFDR-GLIGMYHDWCESF--NTYPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~----l~~a~eR-glig~~~d~ce~~--lpfP~sFDlVh~~ 235 (309)
..+|||+|||+|+++..|++. .. .|.++|.+ .+ ++.+.+| ++.....|..... ..++.+||+|+++
T Consensus 77 g~~VLDlG~GtG~~t~~la~~v~~~G---~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 77 GTKVLYLGAASGTTISHVSDIIELNG---KAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHTTTS---EEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCEEEEEeecCCHHHHHHHHHhCCCC---EEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 468999999999999988863 22 34555665 34 3455554 2322233321111 1223789999988
Q ss_pred cccccccccCCHHHHH-HHHhhcccCCeEEEEE
Q 021643 236 FLLSDVTQRCDIADVA-VEMDRILRPGGYVLVQ 267 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L-~Em~RVLRPGG~lii~ 267 (309)
..+ + +...+| ..+.|+|||||+|+++
T Consensus 154 ~a~---~---~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 154 IAQ---P---DQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp CCC---T---THHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC---h---hHHHHHHHHHHHhCCCCeEEEEE
Confidence 443 1 234444 4566699999999987
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-10 Score=106.79 Aligned_cols=92 Identities=10% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhc---------Ccchh--hhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDR---------GLIGM--YHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eR---------glig~--~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|+|+..++++ .|..+++.+. +..+.++ ++.-. ..| ...+| ++||+|+
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m-----~~~a~~~~~~~~~~~~~v~~~~~~~D----~~~l~~~~fD~V~ 145 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTL-----GVGGHEVPRITESYGWNIVKFKSRVD----IHTLPVERTDVIM 145 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTSTTEEEEEEECC-----CCSSCCCCCCCCBTTGGGEEEECSCC----TTTSCCCCCSEEE
T ss_pred CCEEEEeCcCCCHHHHHHHHcCcEEEEECchh-----hhhhhhhhhhhhccCCCeEEEecccC----HhHCCCCCCcEEE
Confidence 468999999999999999886 2444455442 1111111 11111 122 23356 9999999
Q ss_pred ecccccccccc-CC---HHHHHHHHhhcccCCe--EEEEEe
Q 021643 234 SSFLLSDVTQR-CD---IADVAVEMDRILRPGG--YVLVQD 268 (309)
Q Consensus 234 ~~~v~~~~~~~-~~---~~~~L~Em~RVLRPGG--~lii~D 268 (309)
|+.. .+..+. -+ ...+|.++.|+||||| .|++..
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 9866 322111 01 1138999999999999 999864
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-09 Score=94.05 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=64.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC--CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP--RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP--~sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++...-...+..+|.+ .+++.+.++ |+ +. ...|. ..+++ ++||+|+++.
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG---TLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG---GGCCGGGCCEEEEEESS
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCCCCCeeEEEECC
Confidence 4589999999999999998743000135566666 577776654 32 11 11221 23343 7899999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
+++|+. .++.|+|||||.+++.....
T Consensus 155 ~~~~~~---------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 155 AGPKIP---------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEESSS
T ss_pred chHHHH---------HHHHHHcCCCcEEEEEECCC
Confidence 998765 38899999999999986544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-10 Score=93.92 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhcccc--CCCCC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCES--FNTYP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~--~lpfP-~sFDlVh~ 234 (309)
..+|||+|||+|.++..++.++. ..|.++|.+ .+++.+.++ |+ +. ...|..+. .++++ ++||+|++
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 35899999999999998887653 245666776 566666543 32 11 11222111 12344 89999999
Q ss_pred ccccccccccCCHHHHHHHH--hhcccCCeEEEEEeCHH
Q 021643 235 SFLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTLE 271 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~~ 271 (309)
+..++. .....++.++ .|+|||||.+++.....
T Consensus 123 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 123 DPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 877542 2356677777 99999999999976543
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.4e-09 Score=93.42 Aligned_cols=117 Identities=11% Similarity=0.080 Sum_probs=77.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-------cc---hhh-hhccccC------CCCC-C
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------LI---GMY-HDWCESF------NTYP-R 227 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-------li---g~~-~d~ce~~------lpfP-~ 227 (309)
..+|||+|||+|.++..|+.+.- ...|+++|.+ .+++.+.++- +. ..+ .|. ... .+++ +
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~-~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV-TLRAKARVEAGLPDE 114 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT-TCCHHHHHHTTCCTT
T ss_pred CCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH-HHHhhhhhhhccCCC
Confidence 46899999999999999987531 1357777877 5777776542 21 111 222 111 1367 8
Q ss_pred CcceeEeccccccc---------------cccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCe
Q 021643 228 TYDLLHSSFLLSDV---------------TQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 228 sFDlVh~~~v~~~~---------------~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~ 286 (309)
+||+|+++--+... ...+.++.++.++.|+|||||++++.-..+...++...++.- +.
T Consensus 115 ~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG 187 (260)
T ss_dssp CEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred CcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence 99999998322211 123457889999999999999999987776666666666653 55
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=95.74 Aligned_cols=129 Identities=11% Similarity=0.111 Sum_probs=80.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhcccc-------------CCC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCES-------------FNT 224 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~-------------~lp 224 (309)
..+|||+|||+|.++..|++.......++.+|.+ .+++.+.++ |+.. ...|..+. ...
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 4589999999999999998741001245566665 466666554 4311 01111110 011
Q ss_pred CC---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC------------HHHHHH----HHHHHHcCCC
Q 021643 225 YP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT------------LEMINK----LKPVLHSLQW 285 (309)
Q Consensus 225 fP---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~------------~~~~~~----i~~l~~~l~W 285 (309)
|+ ++||+|++..... +...++.++.|+|||||++++.+. ...... .+.+...-++
T Consensus 141 f~~~~~~fD~I~~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDADKE------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLV 214 (239)
T ss_dssp TCCSTTCEEEEEECSCGG------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTE
T ss_pred ccCCCCCcCEEEEeCCHH------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCe
Confidence 32 6899999875433 356789999999999999999761 112222 3334455566
Q ss_pred eeeee--cceEEEEEeCc
Q 021643 286 STNIY--HDQFLVGKKGF 301 (309)
Q Consensus 286 ~~~~~--~e~~li~~K~~ 301 (309)
++... .+.+.+++|.+
T Consensus 215 ~~~~~p~~~g~~~~~~~~ 232 (239)
T 2hnk_A 215 DVSLVPIADGVSLVRKRL 232 (239)
T ss_dssp EEEEECSTTCEEEEEECC
T ss_pred EEEEEEcCCceEeeeehh
Confidence 66544 67899999876
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=100.02 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=80.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----ch-hhhhccccCCC-CC-CCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IG-MYHDWCESFNT-YP-RTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig-~~~d~ce~~lp-fP-~sFDl 231 (309)
...+|||+|||+|+++..+++..- +..|+.+|.+ .+++.+.++. + +. ...|.. ..+. .+ ++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~-~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGL-AFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH-HHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHH-HHHHhccCCceeE
Confidence 347899999999999999997631 1356677776 5777777643 1 10 112211 1121 25 89999
Q ss_pred eEeccccccccccCCH--HHHHHHHhhcccCCeEEEEEeCH-----HHHHHHHHHHHcCCCeee-ee----------cce
Q 021643 232 LHSSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQDTL-----EMINKLKPVLHSLQWSTN-IY----------HDQ 293 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D~~-----~~~~~i~~l~~~l~W~~~-~~----------~e~ 293 (309)
|+++....+.+. ..+ ..++.++.|+|||||.+++.... .....+.+.+++..+... .. .-.
T Consensus 173 Ii~d~~~~~~~~-~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~ 251 (304)
T 3bwc_A 173 VIIDTTDPAGPA-SKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIG 251 (304)
T ss_dssp EEEECC----------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCE
T ss_pred EEECCCCccccc-hhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceE
Confidence 999765543221 112 57899999999999999996432 345555565555545422 11 234
Q ss_pred EEEEEeC
Q 021643 294 FLVGKKG 300 (309)
Q Consensus 294 ~li~~K~ 300 (309)
++++.|.
T Consensus 252 f~~as~~ 258 (304)
T 3bwc_A 252 TLVCSKK 258 (304)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 7888885
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-09 Score=91.33 Aligned_cols=100 Identities=19% Similarity=0.229 Sum_probs=58.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCE-------EEEecccCCcccHHHHHhcCcchh-hhhcccc------CCCCC-CCcc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLW-------VMNVVPIDAPDTLSIIFDRGLIGM-YHDWCES------FNTYP-RTYD 230 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~-------v~~V~p~d~s~~l~~a~eRglig~-~~d~ce~------~lpfP-~sFD 230 (309)
..+|||+|||+|.++..|+++ +.. ...|+++|.+.+... .+.... ..|..+. ...++ ++||
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD 99 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL---EGATFLCPADVTDPRTSQRILEVLPGRRAD 99 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC---TTCEEECSCCTTSHHHHHHHHHHSGGGCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC---CCCeEEEeccCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999875 310 013455555532100 011001 1111000 01256 7999
Q ss_pred eeEeccccccc----cccC----CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 231 LLHSSFLLSDV----TQRC----DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 231 lVh~~~v~~~~----~~~~----~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|+|+..++.. .+.. ....++.++.|+|||||.+++.+.
T Consensus 100 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 100 VILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 99997544321 1100 014789999999999999999853
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-09 Score=99.61 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=66.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCC-c-ccHHHHHhcC---------c-------c-hhhhhccccCCCC--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDA-P-DTLSIIFDRG---------L-------I-GMYHDWCESFNTY-- 225 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~-s-~~l~~a~eRg---------l-------i-g~~~d~ce~~lpf-- 225 (309)
..+|||+|||+|.++..++..+. ..|+.+|. + .+++.+.++. + + ....+|.+....+
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 35899999999999999988763 14667777 4 5666665432 1 1 0112232211111
Q ss_pred --C-CCcceeEeccccccccccCCHHHHHHHHhhccc---C--CeEEEEE
Q 021643 226 --P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILR---P--GGYVLVQ 267 (309)
Q Consensus 226 --P-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLR---P--GG~lii~ 267 (309)
+ ++||+|+++.++.|.. +...++.++.|+|| | ||.+++.
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred hccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 4 8999999999988754 36789999999999 9 9976554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-10 Score=105.89 Aligned_cols=92 Identities=14% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCcccHHHHHhcC---------cchh--hhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAPDTLSIIFDRG---------LIGM--YHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s~~l~~a~eRg---------lig~--~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|+|+..|++++ |..+++.+ ++..+.++. +.-. ..|. ..+| ++||+|+
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-----m~~~a~~~~~~~~~~~~~v~~~~~~~D~----~~l~~~~fD~Vv 153 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQPNVREVKAYT-----LGTSGHEKPRLVETFGWNLITFKSKVDV----TKMEPFQADTVL 153 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-----CCCTTSCCCCCCCCTTGGGEEEECSCCG----GGCCCCCCSEEE
T ss_pred CCEEEEeccCCCHHHHHHHHcCCEEEEECch-----hhhhhhhchhhhhhcCCCeEEEeccCcH----hhCCCCCcCEEE
Confidence 4689999999999999998862 34444444 211111111 1111 2231 2245 9999999
Q ss_pred ecccccccccc--CC--HHHHHHHHhhcccCCe--EEEEEe
Q 021643 234 SSFLLSDVTQR--CD--IADVAVEMDRILRPGG--YVLVQD 268 (309)
Q Consensus 234 ~~~v~~~~~~~--~~--~~~~L~Em~RVLRPGG--~lii~D 268 (309)
|+.. .+..+. .. ...+|.++.|+||||| .|++..
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 9866 222110 00 1137999999999999 999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=94.36 Aligned_cols=94 Identities=16% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCC---CCCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTY---PRTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpf---P~sFDlVh~ 234 (309)
..+|||+|||+|.++..|+...- ...|+.+|.+ .+++.+.++ |+ +. ...|..+ .++. +++||+|++
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ-LGEKLELYPLFDVLFI 132 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG-SHHHHTTSCCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH-HHHhcccCCCccEEEE
Confidence 45899999999999999987410 1256677776 577777665 43 11 1222211 2222 378999998
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...+ +...++.++.|+|||||.+++.+
T Consensus 133 ~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 133 DAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 76653 46779999999999999999975
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-09 Score=98.56 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=69.3
Q ss_pred CeEEEeCCcchHHHHHhhcC------CCEEEEecccCCc-ccHHHHHhc--CcchhhhhccccC--CCCC--CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQ------PLWVMNVVPIDAP-DTLSIIFDR--GLIGMYHDWCESF--NTYP--RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~------~v~v~~V~p~d~s-~~l~~a~eR--glig~~~d~ce~~--lpfP--~sFDlVh~ 234 (309)
.+|||+|||+|.+++.|++. +. .|+++|.+ .+++.+... .+.-...|.. .. +++. .+||+|++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~---~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~-~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC---QVIGIDRDLSRCQIPASDMENITLHQGDCS-DLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC---EEEEEESCCTTCCCCGGGCTTEEEEECCSS-CSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC---EEEEEeCChHHHHHHhccCCceEEEECcch-hHHHHHhhccCCCCEEEE
Confidence 58999999999999998864 33 34455554 344444321 1211222321 11 3544 37999998
Q ss_pred ccccccccccCCHHHHHHHHhh-cccCCeEEEEEeCHH-----HHHHHHHHHHcC--CCee
Q 021643 235 SFLLSDVTQRCDIADVAVEMDR-ILRPGGYVLVQDTLE-----MINKLKPVLHSL--QWST 287 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~R-VLRPGG~lii~D~~~-----~~~~i~~l~~~l--~W~~ 287 (309)
... |. +...+|.|+.| +|||||++++.|... ..+.+..+++.. +++.
T Consensus 159 d~~--~~----~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA--HA----NTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS--CS----SHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc--hH----hHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 654 32 46789999998 999999999987421 123566666665 4554
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-09 Score=94.06 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=70.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc-----C-c---c-hhhhhccccCCCCC-CCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR-----G-L---I-GMYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR-----g-l---i-g~~~d~ce~~lpfP-~sFDl 231 (309)
..+|||+|||+|.++.+|++. +. .+..+|.+ .+++.+.++ | + + -...|.. ..+++ ++||+
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~--~~~~~~~~~D~ 174 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA--DSELPDGSVDR 174 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG--GCCCCTTCEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH--hcCCCCCceeE
Confidence 358999999999999999874 33 45666776 567666654 3 1 1 1222322 35677 89999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHc-CCC
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHS-LQW 285 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~-l~W 285 (309)
|+++ .. +...+|.++.|+|||||++++.... +.+.++...++. ..|
T Consensus 175 v~~~-----~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f 222 (280)
T 1i9g_A 175 AVLD-----ML---APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCW 222 (280)
T ss_dssp EEEE-----SS---CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSB
T ss_pred EEEC-----Cc---CHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 9883 22 2345899999999999999997653 344444433333 444
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-10 Score=112.87 Aligned_cols=109 Identities=13% Similarity=0.212 Sum_probs=71.7
Q ss_pred CCeEEEeCCc------chHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-------CCc
Q 021643 167 VRNVMDMNAS------YGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-------RTY 229 (309)
Q Consensus 167 ~r~VLD~GCG------~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-------~sF 229 (309)
..+|||+||| +|+.+..+... +. .|+++|.+ .|. .....+.-...|. + .+||+ ++|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~--~~~~rI~fv~GDa-~-dlpf~~~l~~~d~sF 289 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSH--VDELRIRTIQGDQ-N-DAEFLDRIARRYGPF 289 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGG--GCBTTEEEEECCT-T-CHHHHHHHHHHHCCE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHh--hcCCCcEEEEecc-c-ccchhhhhhcccCCc
Confidence 4689999999 77666666542 22 45566666 342 1111221122231 1 24454 899
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------------HHHHHHHHHHHcCCCe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------------EMINKLKPVLHSLQWS 286 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------------~~~~~i~~l~~~l~W~ 286 (309)
|+|+|+.. +++. +...+|.|+.|+|||||++++.|.. .+++.++++.+.+.|.
T Consensus 290 DlVisdgs-H~~~---d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~~ 360 (419)
T 3sso_A 290 DIVIDDGS-HINA---HVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQHQ 360 (419)
T ss_dssp EEEEECSC-CCHH---HHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTGG
T ss_pred cEEEECCc-ccch---hHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhccc
Confidence 99999743 3332 4678999999999999999997632 3688899998888765
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=101.77 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=63.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++.......|+.+|.+ ++++.+.++ |+. . ...|. + ..+.+ ++||+|++..+
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~-~-~~~~~~~~fD~Iv~~~~ 153 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG-Y-YGVPEFSPYDVIFVTVG 153 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-G-GCCGGGCCEEEEEECSB
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh-h-hccccCCCeEEEEEcCC
Confidence 4589999999999999998742110135566666 577776655 431 1 12232 1 22334 89999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+. .++.|+|||||.+++...
T Consensus 154 ~~~~~---------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 154 VDEVP---------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp BSCCC---------HHHHHHEEEEEEEEEEBC
T ss_pred HHHHH---------HHHHHhcCCCcEEEEEEC
Confidence 98765 478899999999999754
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=101.57 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=58.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCcccHHHHH-h-cCc--chhhhhccccCCCCC-CCcceeEeccccc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAPDTLSIIF-D-RGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS- 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s~~l~~a~-e-Rgl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~~- 239 (309)
..+|||+|||+|+|+..|++++ |..+++.....+.++..+. + .|. +..... . ....+| .+||+|+|+..++
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-D~~~l~~~~fD~V~sd~~~~~ 160 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-V-DVFFIPPERCDTLLCDIGESS 160 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-c-ccccCCcCCCCEEEECCcccc
Confidence 3689999999999999999873 3344441111121111100 1 111 111111 0 134456 8999999987653
Q ss_pred -c-ccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 -D-VTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 -~-~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
| ..+......+|.++.|+|||||.|++..
T Consensus 161 g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 161 PNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1111111258999999999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-09 Score=92.69 Aligned_cols=127 Identities=16% Similarity=0.081 Sum_probs=77.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chh-hhhccccCC-CCC-----CCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGM-YHDWCESFN-TYP-----RTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~-~~d~ce~~l-pfP-----~sFDl 231 (309)
..+|||+|||+|.++..|++.-.....++.+|.+ .+++.+.++ |+ +.. ..|..+ .+ .++ ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE-TLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH-HHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH-HHHHHHhcCCCCCccE
Confidence 4689999999999999998741001245556665 466665543 43 111 111111 11 111 68999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHH----HHHcCCCeeeee--cce
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKP----VLHSLQWSTNIY--HDQ 293 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~----l~~~l~W~~~~~--~e~ 293 (309)
|++... ..+...++.++.|+|||||.+++.+.. .....+++ +...-+++..+. .+.
T Consensus 149 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG 222 (229)
T 2avd_A 149 AVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG 222 (229)
T ss_dssp EEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred EEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCc
Confidence 998643 234677999999999999999996421 12223333 334455665544 677
Q ss_pred EEEEEeC
Q 021643 294 FLVGKKG 300 (309)
Q Consensus 294 ~li~~K~ 300 (309)
+++++|.
T Consensus 223 l~~~~k~ 229 (229)
T 2avd_A 223 LTLAFKI 229 (229)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 8888873
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.8e-09 Score=90.49 Aligned_cols=103 Identities=15% Similarity=0.159 Sum_probs=71.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCC-C-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTY-P-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpf-P-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..+++.+. .+..+|.+ .+++.+.++ |+ +. ...|. ..++ + ++||+|+++
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDAEVPEGIFHAAFVD 165 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTSCCCTTCBSEEEEC
T ss_pred CCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhcccCCCcccEEEEC
Confidence 35899999999999999988632 56677776 577777664 33 11 11222 2233 6 899999873
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcC
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSL 283 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l 283 (309)
.+ +...++.++.|+|||||.+++... .+...++...++..
T Consensus 166 -----~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 166 -----VR---EPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp -----SS---CGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred -----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 22 234589999999999999999877 44556666655544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.3e-09 Score=107.60 Aligned_cols=103 Identities=7% Similarity=0.037 Sum_probs=67.9
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHh-----------cCc----ch-hhhhc
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFD-----------RGL----IG-MYHDW 218 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~e-----------Rgl----ig-~~~d~ 218 (309)
++.+.+.. ..+|||+|||+|.++..++. .+.. .++++|.+ .++.+|.+ .|+ +. ...|.
T Consensus 166 l~~l~l~~--gd~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 166 IDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHCCCT--TCEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 33444443 45899999999999988875 3421 35666776 46666543 132 11 12232
Q ss_pred cccCCCCC---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 219 CESFNTYP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 219 ce~~lpfP---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
. .+||+ .+||+|+++..+ +.+ ++...|.|+.|+|||||.|++.+.
T Consensus 242 ~--~lp~~d~~~~aDVVf~Nn~~-F~p---dl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 242 L--SEEWRERIANTSVIFVNNFA-FGP---EVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp T--SHHHHHHHHTCSEEEECCTT-CCH---HHHHHHHHHHTTSCTTCEEEESSC
T ss_pred c--CCccccccCCccEEEEcccc-cCc---hHHHHHHHHHHcCCCCcEEEEeec
Confidence 1 24554 479999998665 222 477899999999999999999864
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-09 Score=107.53 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=66.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHh----cCc---ch-hhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFD----RGL---IG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~e----Rgl---ig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+. ..|.++|.+.+++.|.+ .|+ +. ...|+ + .+++|+.||+|+++.++
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~-~-~~~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV-E-EVSLPEQVDIIISEPMG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCT-T-TCCCSSCEEEEECCCCH
T ss_pred CCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECch-h-hCccCCCeEEEEEeCch
Confidence 46899999999999999988753 14455566555555443 344 11 12232 1 24667889999998877
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
+|+.+ .++...+.++.|+|||||++++
T Consensus 235 ~~~~~-e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFN-ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTC-HHHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCc-HHHHHHHHHHHHhcCCCCEEEE
Confidence 76643 2456788899999999999985
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-09 Score=96.14 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=63.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-C-CcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-R-TYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~-sFDlVh~~~ 236 (309)
..+|||+|||+|.++..|++... ..++.+|.+ .+++.+.++ |+ +. ...| ...+++ . .||+|++..
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGD---GSKGFPPKAPYDVIIVTA 166 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC---GGGCCGGGCCEEEEEECS
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECC---cccCCCCCCCccEEEECC
Confidence 45899999999999999987531 235556665 466666654 32 11 1122 135676 4 499999998
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+++++. .++.|+|||||.+++....
T Consensus 167 ~~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 167 GAPKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BBSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred cHHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 887654 3789999999999998654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=89.29 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCcchhhhhccccCCC--------CC----CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNT--------YP----RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lp--------fP----~sFDlVh~ 234 (309)
..+|||+|||+|+++..|++++.. |+++|.+.+.. ..++.-...|..+ .+ ++ ++||+|+|
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~---V~gvD~~~~~~---~~~v~~~~~D~~~--~~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARK---IISIDLQEMEE---IAGVRFIRCDIFK--ETIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSE---EEEEESSCCCC---CTTCEEEECCTTS--SSHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCc---EEEEecccccc---CCCeEEEEccccC--HHHHHHHHHHhhcccCCcceEEec
Confidence 468999999999999999987543 33444432110 0122111222111 11 11 48999999
Q ss_pred ccccc--------cccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeee-ee---------cceEE
Q 021643 235 SFLLS--------DVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTN-IY---------HDQFL 295 (309)
Q Consensus 235 ~~v~~--------~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~-~~---------~e~~l 295 (309)
+.... |.......+.+|.++.|+|||||.|++... .+....+...++.. ++.. +. .|-.+
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y~ 176 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSEIYI 176 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCceEEE
Confidence 64321 110011135789999999999999998643 12223344444332 3321 11 67777
Q ss_pred EEEe
Q 021643 296 VGKK 299 (309)
Q Consensus 296 i~~K 299 (309)
||++
T Consensus 177 v~~~ 180 (191)
T 3dou_A 177 MFFG 180 (191)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7765
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-09 Score=98.39 Aligned_cols=119 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCCCCcceeEec---
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYPRTYDLLHSS--- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP~sFDlVh~~--- 235 (309)
..+|||+|||+|+++..|++.---...|+++|.+ .+++.+.++ |+ +. ...|. ....+++++||+|+++
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~Pc 197 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAPC 197 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECCT
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCCC
Confidence 4589999999999999998631000146677777 567666554 43 11 12232 1112234889999984
Q ss_pred ---ccccccccc------CC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHcCCCe
Q 021643 236 ---FLLSDVTQR------CD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSLQWS 286 (309)
Q Consensus 236 ---~v~~~~~~~------~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l~W~ 286 (309)
.++.+.++. .+ ...+|.++.|+|||||++++++. .+....++.+++...++
T Consensus 198 sg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 198 TGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 223321110 00 14789999999999999999753 23334556666554443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-09 Score=92.64 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=61.8
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----C--------cchhhhhccccCCCCC-CCcce
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----G--------LIGMYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----g--------lig~~~d~ce~~lpfP-~sFDl 231 (309)
..+|||+|||+|.++..|++. +.. ..|+.+|.+ .+++.+.++ | +.-...|.. ..+.+ ++||+
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~ 154 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR--MGYAEEAPYDA 154 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG--GCCGGGCCEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcc--cCcccCCCcCE
Confidence 468999999999999998864 210 145566666 466666543 1 111122221 23344 89999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
|++...++++ +.++.|+|||||++++....
T Consensus 155 i~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVV---------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSC---------CHHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHH---------HHHHHHhcCCCcEEEEEEec
Confidence 9998877543 46889999999999998643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=92.59 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=72.9
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc---ch-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL---IG-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl---ig-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.++..|++. +- ...+..+|.+ .+++.+.++ |+ +. ...|.. ..++ ++||+|+++
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~D~V~~~ 188 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS---EGFDEKDVDALFLD 188 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG---GCCSCCSEEEEEEC
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH---HcccCCccCEEEEC
Confidence 358999999999999999875 21 0246677776 577776654 43 11 122322 2267 899999874
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCe
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWS 286 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~ 286 (309)
.+ +...++.++.|+|||||.+++.+.. +.+.++.+.++...|.
T Consensus 189 -----~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 189 -----VP---DPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp -----CS---CGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred -----Cc---CHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 22 2346899999999999999998763 4556666666555554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-09 Score=93.97 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=78.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccc--cCCCCC---CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCE--SFNTYP---RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce--~~lpfP---~sFDlV 232 (309)
..+|||+|||+|.++..|+..-.-...++.+|.+ .+++.+.++ |+.. ...+..+ ..++++ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 3589999999999999998741000245556666 466666543 4311 1111111 112332 789999
Q ss_pred EeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHH----HcCCCeeeee--cceE
Q 021643 233 HSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVL----HSLQWSTNIY--HDQF 294 (309)
Q Consensus 233 h~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~----~~l~W~~~~~--~e~~ 294 (309)
++.... .+...++.++.|+|||||++++.+.. .....++++. ..-+++.... .+.+
T Consensus 153 ~~d~~~------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~ 226 (232)
T 3cbg_A 153 FIDADK------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGM 226 (232)
T ss_dssp EECSCG------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCE
T ss_pred EECCCH------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeE
Confidence 986442 23567999999999999999996421 2233344433 4445665544 5678
Q ss_pred EEEEeC
Q 021643 295 LVGKKG 300 (309)
Q Consensus 295 li~~K~ 300 (309)
.+++|.
T Consensus 227 ~~~~~~ 232 (232)
T 3cbg_A 227 TLALKK 232 (232)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 888874
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=92.87 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC------c----ch-hhhhccccCCCCC-CCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L----IG-MYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg------l----ig-~~~d~ce~~lpfP-~sFDl 231 (309)
..++|||+|||+|.++..++++ ++ ..|+.+|.+ .+++.+++.- + +. ...| +...++.+ ++||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D-~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD-GFMHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC-SHHHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECc-HHHHHhhCCCCeeE
Confidence 3578999999999999999986 43 245666666 5777776542 2 11 1112 11123444 89999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeeee----------cceE
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY----------HDQF 294 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~----------~e~~ 294 (309)
|+++... +...... ...++.++.|+|||||.+++... .+....+.+.+++.=-.+... ...+
T Consensus 152 Ii~d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~ 230 (275)
T 1iy9_A 152 IMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTF 230 (275)
T ss_dssp EEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEE
T ss_pred EEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEE
Confidence 9996433 2211111 25689999999999999999742 333444444444442222221 2357
Q ss_pred EEEEeCc
Q 021643 295 LVGKKGF 301 (309)
Q Consensus 295 li~~K~~ 301 (309)
+++.|.+
T Consensus 231 ~~ask~~ 237 (275)
T 1iy9_A 231 TIGSKKY 237 (275)
T ss_dssp EEEESSC
T ss_pred EEeeCCC
Confidence 8888864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-08 Score=88.10 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=70.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
..+|||+|||+|.++..++..+. ..++++|.+ .+++.+.++- +.-...|. ..+|++||+|+++..++|..+
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~----~~~~~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADV----SEISGKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCG----GGCCCCEEEEEECCCC-----
T ss_pred CCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEECcH----HHCCCCeeEEEECCCchhccC
Confidence 46899999999999999988753 246677776 6888887763 22122232 224589999999999988764
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQ 284 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~ 284 (309)
.. ...++.++.|+| |+.+++.. ......+.+++....
T Consensus 126 ~~-~~~~l~~~~~~~--g~~~~~~~-~~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 126 HS-DRAFIDKAFETS--MWIYSIGN-AKARDFLRREFSARG 162 (200)
T ss_dssp ---CHHHHHHHHHHE--EEEEEEEE-GGGHHHHHHHHHHHE
T ss_pred ch-hHHHHHHHHHhc--CcEEEEEc-CchHHHHHHHHHHCC
Confidence 22 357899999999 66555543 344556666665544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.5e-09 Score=95.10 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----c-----------chh-hhhccccCCCCCCC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----L-----------IGM-YHDWCESFNTYPRT 228 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----l-----------ig~-~~d~ce~~lpfP~s 228 (309)
..+|||+|||+|.++..+++.+. ..++.+|.+ .+++.+.++- + +.. ..|. ...++.+++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~-~~~l~~~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG-FEFIKNNRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH-HHHHHHCCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECch-HHHhcccCC
Confidence 46899999999999999998742 356677776 5777776542 1 000 1111 011111578
Q ss_pred cceeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeeeee---------cc
Q 021643 229 YDLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTNIY---------HD 292 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~~~---------~e 292 (309)
||+|+++... ++..... ...++.++.|+|||||.+++.. ..+.+..+.+.++..--.+... ..
T Consensus 153 fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~g~~ 231 (281)
T 1mjf_A 153 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPW 231 (281)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSE
T ss_pred eeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCCCceE
Confidence 9999986543 2221112 2678999999999999999963 2333444444333322222211 23
Q ss_pred eEEEEEeC
Q 021643 293 QFLVGKKG 300 (309)
Q Consensus 293 ~~li~~K~ 300 (309)
.++++.|.
T Consensus 232 ~~~~as~~ 239 (281)
T 1mjf_A 232 AFLVGVKG 239 (281)
T ss_dssp EEEEEEES
T ss_pred EEEEeeCC
Confidence 47888886
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-09 Score=100.91 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=74.1
Q ss_pred cccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcc--hHHHHHhhc--CCCEEEEecccCCc-ccHHHHHhcC------
Q 021643 142 NKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASY--GGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDRG------ 210 (309)
Q Consensus 142 ~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~--G~faa~L~~--~~v~v~~V~p~d~s-~~l~~a~eRg------ 210 (309)
...++.|..++.. |+.. ...++.|||+|||+ +++...++. .+- ..|+.+|.+ .|+..++++-
T Consensus 59 a~~nr~fl~rav~-~l~~----~~g~~q~LDLGcG~pT~~~~~~la~~~~P~--arVv~VD~sp~mLa~Ar~~l~~~~~~ 131 (277)
T 3giw_A 59 MRANRDWMNRAVA-HLAK----EAGIRQFLDIGTGIPTSPNLHEIAQSVAPE--SRVVYVDNDPIVLTLSQGLLASTPEG 131 (277)
T ss_dssp HHHHHHHHHHHHH-HHHH----TSCCCEEEEESCCSCCSSCHHHHHHHHCTT--CEEEEEECCHHHHHTTHHHHCCCSSS
T ss_pred HHHHHHHHHHHHH-Hhcc----ccCCCEEEEeCCCCCcccHHHHHHHHHCCC--CEEEEEeCChHHHHHHHHHhccCCCC
Confidence 3345555555443 4321 23478999999997 433333332 121 256777887 6888776641
Q ss_pred -cchhhhhcccc--CC--CCC-CCcc-----eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 211 -LIGMYHDWCES--FN--TYP-RTYD-----LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 211 -lig~~~d~ce~--~l--pfP-~sFD-----lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
..-+..|..+. .+ |.. ++|| .|+++.+|||+++..+...+|.++.+.|+|||+|++++
T Consensus 132 ~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 132 RTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp EEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 10111221110 01 111 5566 58899999999876667889999999999999999984
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=91.76 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=62.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc---hhh-hhccccCCC-C------CC
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI---GMY-HDWCESFNT-Y------PR 227 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~-~d~ce~~lp-f------P~ 227 (309)
.++|||+|||+|.++..|+.. +. .|+.+|.+ .+++.+.++ |+. ... .|. ...++ + ++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda-~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPA-LPVLDEMIKDEKNHG 155 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH-HHHHHHHHHSGGGTT
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH-HHHHHHHHhccCCCC
Confidence 468999999999999988863 32 45566665 466666543 441 111 121 11222 2 37
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+||+|++.... .+...++.++.|+|||||++++.+
T Consensus 156 ~fD~V~~d~~~------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 156 SYDFIFVDADK------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp CBSEEEECSCS------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CEEEEEEcCch------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 89999986432 246789999999999999999865
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=96.95 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=64.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCc-ccHHHHHhcCc---chhhhhccccCCCCCCCcceeEeccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s-~~l~~a~eRgl---ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
..+|||+|||+|.++...++.|. .|..|...... .+.+.+...|+ +.+++.-.+ .+.+|..||+|+|..+-..+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~-~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVE-TVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTT-TCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeee-eecCCccccEEEeecccccc
Confidence 35899999999999877777663 34444332211 13344445565 222322122 46778889999986444434
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.....+..++...+|.|||||.++-+
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccchhhhHHHHHHhhCCCCceECCc
Confidence 34446888999999999999998753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.2e-09 Score=95.92 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=80.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCCCCc---ceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYPRTY---DLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP~sF---DlVh~~ 235 (309)
.+|||+|||+|.++..|+..+. ..|+++|.+ .+++.+.++ |+. . ...|+. .+++++| |+|+++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~---~~~~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL---EPFKEKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT---GGGGGGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch---hhcccccCCCCEEEEc
Confidence 4899999999999999987621 256777877 577777654 431 1 122321 2334789 999997
Q ss_pred ------------cccccccc-----cCCHHHHHHHHh-hcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee---cceE
Q 021643 236 ------------FLLSDVTQ-----RCDIADVAVEMD-RILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY---HDQF 294 (309)
Q Consensus 236 ------------~v~~~~~~-----~~~~~~~L~Em~-RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~---~e~~ 294 (309)
.+. |.+. .++-..++.++. +.|+|||++++.-..+.-+.+..+.+.. +...- .+++
T Consensus 200 PPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~--~~~~D~~g~~R~ 276 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT--VFLKDSAGKYRF 276 (284)
T ss_dssp CCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC--EEEECTTSSEEE
T ss_pred CCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC--CeecccCCCceE
Confidence 122 2211 011126899999 9999999999976555556677766554 22211 5677
Q ss_pred EEEEeC
Q 021643 295 LVGKKG 300 (309)
Q Consensus 295 li~~K~ 300 (309)
++++++
T Consensus 277 ~~~~~k 282 (284)
T 1nv8_A 277 LLLNRR 282 (284)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 777664
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=95.08 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=80.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-------c----ch-hhhhccccCCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-------L----IG-MYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-------l----ig-~~~d~ce~~lpfP-~sFDlV 232 (309)
..+|||+|||+|.++..+++..- +..++.+|.+ .+++.+.++- + +. ...|. ...++.+ ++||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~-~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-RAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-HHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchH-HHHHHhcCCCccEE
Confidence 47899999999999999998631 1356667776 5777776542 1 00 11121 1123444 899999
Q ss_pred Eeccccccc--cccCC--HHHHHHHHhhcccCCeEEEEEeC------HHHHHHHHHHHHcCCCeeeee---------cce
Q 021643 233 HSSFLLSDV--TQRCD--IADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWSTNIY---------HDQ 293 (309)
Q Consensus 233 h~~~v~~~~--~~~~~--~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~~~~~---------~e~ 293 (309)
+++...+.. ..... ...++.++.|+|||||.+++... .+....+.+.++..--.+... ...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~ 235 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFG 235 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEE
Confidence 997544320 11111 36799999999999999998631 233444544444443233221 234
Q ss_pred EEEEEeCc
Q 021643 294 FLVGKKGF 301 (309)
Q Consensus 294 ~li~~K~~ 301 (309)
++++.|.+
T Consensus 236 ~~~as~~~ 243 (314)
T 1uir_A 236 FLLASDAF 243 (314)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 78888863
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-08 Score=94.06 Aligned_cols=118 Identities=18% Similarity=0.041 Sum_probs=72.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
...+|||+|||+|.++..++....-...+.++|.+ .+++.|.++ |+ +. ...|. ..++.+ ++||+|+++-
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~--~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA--RHLPRFFPEVDRILANP 280 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG--GGGGGTCCCCSEEEECC
T ss_pred CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh--hhCccccCCCCEEEECC
Confidence 34689999999999988887632000134556666 466666554 43 11 12232 135666 8899999974
Q ss_pred cccccc-cc----CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 237 LLSDVT-QR----CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 237 v~~~~~-~~----~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
-+..-. +. .....++.++.|+|||||.+++...... .++.+.+ ..|+..
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~ 334 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALR 334 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEE
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEE
Confidence 432211 10 0136789999999999999999876542 2445555 667653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-09 Score=91.19 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=61.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC----EEEEecccCCc-ccHHHHHhc----Cc-------ch-hhhhccccCCC----C
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL----WVMNVVPIDAP-DTLSIIFDR----GL-------IG-MYHDWCESFNT----Y 225 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v----~v~~V~p~d~s-~~l~~a~eR----gl-------ig-~~~d~ce~~lp----f 225 (309)
..+|||+|||+|.++..|++... -...|+.+|.+ .+++.+.++ |+ +. ...|. . ..+ +
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~-~-~~~~~~~~ 158 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI-Y-QVNEEEKK 158 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG-G-GCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh-H-hcccccCc
Confidence 35899999999999999987421 00135556666 466666554 31 11 11221 1 123 4
Q ss_pred C-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 226 P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 226 P-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+ ++||+|++...++++ +.++.++|||||++++.-.
T Consensus 159 ~~~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASEL---------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSSC---------CHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHHH---------HHHHHHhcCCCcEEEEEEc
Confidence 5 899999999887643 5788999999999999754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.71 E-value=9.6e-08 Score=82.16 Aligned_cols=115 Identities=8% Similarity=0.042 Sum_probs=79.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-ch-hhhhccccCCCCCCCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-IG-MYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-ig-~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..++..+.. .+.++|.+ .+++.+.++- + +. ...| ...+|.+||+|+++-.++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d----~~~~~~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGD----VSEFNSRVDIVIMNPPFG 123 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESC----GGGCCCCCSEEEECCCCS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECc----hHHcCCCCCEEEEcCCCc
Confidence 468999999999999999887531 46677776 5777777653 1 11 1122 223467999999998776
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHHcCCCeeeee
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
+... .....++.++.|+| ||.+++. ......+.+.+++....++....
T Consensus 124 ~~~~-~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 124 SQRK-HADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSST-TTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccC-CchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 6543 23457899999999 6655544 26666777888888777776543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-08 Score=96.30 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=74.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----hhh-hhccccCCCC----CCCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----GMY-HDWCESFNTY----PRTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~-~d~ce~~lpf----P~sFDlV 232 (309)
..+|||+|||+|.|+..++..+. .|+.+|.+ .+++.+.++ |+. ..+ .| +...++. .++||+|
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D-~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED-AMKFIQREERRGSTYDII 229 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC-HHHHHHHHHHHTCCBSEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc-HHHHHHHHHhcCCCceEE
Confidence 35899999999999999998775 57788887 577776654 321 111 12 1112222 3689999
Q ss_pred Eeccc-ccc------ccccCCHHHHHHHHhhcccCCeEEEEEeC-------HHHHHHHHHHHHcCCCeee
Q 021643 233 HSSFL-LSD------VTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 233 h~~~v-~~~------~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l~W~~~ 288 (309)
+++-- +.. +....+...++.++.|+|||||++++... ....+.+++.++....++.
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 98521 110 00112367899999999999999777532 2244555555666666544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-08 Score=94.61 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=64.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----chh-hhhccccCCCCC-CCccee
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IGM-YHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig~-~~d~ce~~lpfP-~sFDlV 232 (309)
...+|||+|||+|.++..|++..- ...++.+|.+ .+++.+.++- + +.. ..| +...++.+ ++||+|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~D-a~~~l~~~~~~fD~I 172 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD-GFEFMKQNQDAFDVI 172 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC-HHHHHHTCSSCEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc-HHHHHhhCCCCceEE
Confidence 347899999999999999998631 1356667776 5777776542 1 111 112 11124445 899999
Q ss_pred EeccccccccccC--CHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++... +..... ....++.++.|+|||||.+++..
T Consensus 173 i~d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 173 ITDSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EEECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 986433 221111 12468999999999999999975
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=94.96 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=63.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----ch-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IG-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig-~~~d~ce~~lpfP-~sFDlVh 233 (309)
.++|||+|||+|.++..+++..- ...|+.+|.+ .+++.|.++- + +. ...|. ...++.+ ++||+|+
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~-~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-FEFLKNHKNEFDVII 186 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-HHHHHHCTTCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChH-HHHHHhcCCCceEEE
Confidence 46899999999999999988631 2356777877 5788877652 1 00 11121 1123335 8999999
Q ss_pred eccccccccccCCH--HHHHHHHhhcccCCeEEEEEe
Q 021643 234 SSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 234 ~~~v~~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D 268 (309)
++. +.++.....+ ..++.++.|+|||||.+++..
T Consensus 187 ~d~-~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDS-SDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECC-C-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcC-CCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 864 3333221122 578999999999999999974
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-08 Score=92.74 Aligned_cols=98 Identities=7% Similarity=0.050 Sum_probs=63.4
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC------c----ch-hhhhccccCCCCC-CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------L----IG-MYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg------l----ig-~~~d~ce~~lpfP-~sFDlV 232 (309)
..+|||+|||+|+++..+++. +. ..|+.+|.+ .+++.+.++- + +. ...|. ...++.+ ++||+|
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~-~~~l~~~~~~fD~I 167 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG-AEYVRKFKNEFDVI 167 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-HHHGGGCSSCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH-HHHHhhCCCCceEE
Confidence 468999999999999999986 32 356667776 5777776542 1 11 11121 1124444 899999
Q ss_pred Eecccccc-ccccC--CHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSSFLLSD-VTQRC--DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~~v~~~-~~~~~--~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+++.. .+ ..... ....++.++.|+|||||.+++..
T Consensus 168 i~d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 168 IIDST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEC-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 98632 22 11111 12678999999999999999973
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=90.31 Aligned_cols=124 Identities=12% Similarity=0.044 Sum_probs=77.0
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccch---h-hhhccccCCC------CC-C
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLIG---M-YHDWCESFNT------YP-R 227 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----glig---~-~~d~ce~~lp------fP-~ 227 (309)
.++|||+|||+|..+..|++. +. .++.+|.+ .+++.+.++ |+.. . ..|..+ .++ ++ +
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~-~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML-ALDNLLQGQESEG 146 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HHHHHHHSTTCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH-HHHHHHhccCCCC
Confidence 468999999999999998863 32 45566665 466665543 4411 1 112111 112 23 7
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH-----------------HHHHHHHH----HHHcCCCe
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL-----------------EMINKLKP----VLHSLQWS 286 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-----------------~~~~~i~~----l~~~l~W~ 286 (309)
+||+|++...- .+...++.++.|+|||||++++.+.. .....+++ +...-+..
T Consensus 147 ~fD~I~~d~~~------~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~ 220 (237)
T 3c3y_A 147 SYDFGFVDADK------PNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIE 220 (237)
T ss_dssp CEEEEEECSCG------GGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEE
T ss_pred CcCEEEECCch------HHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeE
Confidence 89999976322 23577999999999999999997521 01223333 33444555
Q ss_pred eeee--cceEEEEEeC
Q 021643 287 TNIY--HDQFLVGKKG 300 (309)
Q Consensus 287 ~~~~--~e~~li~~K~ 300 (309)
.... .+.+.+++|.
T Consensus 221 ~~~lp~~dG~~~~~~~ 236 (237)
T 3c3y_A 221 IVHLPLGDGITFCRRL 236 (237)
T ss_dssp EEEECSTTCEEEEEEC
T ss_pred EEEEEeCCceEEEEEc
Confidence 4443 5678888886
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-09 Score=103.18 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=65.5
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHH-------Hhc----Cc----chhhh-h
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSII-------FDR----GL----IGMYH-D 217 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a-------~eR----gl----ig~~~-d 217 (309)
.++.+.+. ...+|||+|||+|.++..|+.. +. ..|.++|.+ .++..| .++ |+ +...+ +
T Consensus 234 ml~~l~l~--~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 234 VYQQCQLK--KGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHTTCC--TTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 33344443 3468999999999999999874 32 134455555 344444 433 42 11111 1
Q ss_pred ccccCCCC--C-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 218 WCESFNTY--P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 218 ~ce~~lpf--P-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
-.....+| + ++||+|+++.++. .+ ++..+|.|+.|+|||||.+++.+.
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~~---d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF-DE---DLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-CH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccccccccccCCCCEEEEeCccc-cc---cHHHHHHHHHHhCCCCeEEEEeec
Confidence 00000123 3 7899999876552 22 367789999999999999999863
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=8.1e-09 Score=90.87 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=61.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CC----EEEEecccCCc-ccHHHHHhcC------------cchhhhhccccCCCCC--
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PL----WVMNVVPIDAP-DTLSIIFDRG------------LIGMYHDWCESFNTYP-- 226 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v----~v~~V~p~d~s-~~l~~a~eRg------------lig~~~d~ce~~lpfP-- 226 (309)
..+|||+|||+|.++..|++. +. ....++.+|.+ .+++.+.++. +.-...|. ..+++
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~ 161 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG---RKGYPPN 161 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG---GGCCGGG
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc---ccCCCcC
Confidence 358999999999999988873 21 00134556665 4666665442 11111221 22455
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++||+|++...++++ +.++.|+|||||++++.-.
T Consensus 162 ~~fD~I~~~~~~~~~---------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDT---------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSC---------CHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHH---------HHHHHHHhcCCCEEEEEEe
Confidence 799999999888764 3688999999999999754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.3e-08 Score=92.51 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=80.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----------ch-hhhhccccCCCCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IG-MYHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----------ig-~~~d~ce~~lpfP-~sFDlVh 233 (309)
..+|||+|||+|.++..+++..- +..++.+|.+ .+++.+.++-- +. ...|.. ..++.+ ++||+|+
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~-~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS-KFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH-HHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHH-HHHhhcCCCceEEE
Confidence 46899999999999999998621 1356777777 57888776521 00 111211 123334 8999999
Q ss_pred eccccccccccCCH--HHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCCeeeee----------cceEEE
Q 021643 234 SSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQWSTNIY----------HDQFLV 296 (309)
Q Consensus 234 ~~~v~~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W~~~~~----------~e~~li 296 (309)
++.. .++.....+ ..++.++.|+|||||.+++... .+.+.++.+.++..--.+... .-.+++
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 8642 222111112 6799999999999999999632 233444444444443333222 123678
Q ss_pred EEeCc
Q 021643 297 GKKGF 301 (309)
Q Consensus 297 ~~K~~ 301 (309)
+.|.+
T Consensus 274 as~~~ 278 (321)
T 2pt6_A 274 CSKTD 278 (321)
T ss_dssp EESST
T ss_pred eeCCC
Confidence 88864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-09 Score=96.34 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcC------------------cchhhhhccccCCCCC
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRG------------------LIGMYHDWCESFNTYP 226 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRg------------------lig~~~d~ce~~lpfP 226 (309)
..+|||+|||+|.++..|+.. +.. ..|..+|.+ .+++.|.++. +.-...|..+...+++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 458999999999999999874 210 134555665 4666665531 1111223222112677
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++||+|+++.. + ...++.++.|+|||||.+++...
T Consensus 185 ~~~fD~V~~~~~-----~---~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 185 SLTFDAVALDML-----N---PHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ---EEEEEECSS-----S---TTTTHHHHGGGEEEEEEEEEEES
T ss_pred CCCeeEEEECCC-----C---HHHHHHHHHHhcCCCcEEEEEeC
Confidence 79999998532 1 12279999999999999998764
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-08 Score=91.43 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=71.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.|+..+++... ...|.++|.+ .+++.+.++ |+ .-...|. +.. +.+++||+|+++...
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~-~~~-~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN-RDV-ELKDVADRVIMGYVH 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG-GGC-CCTTCEEEEEECCCS
T ss_pred CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh-HHc-CccCCceEEEECCcc
Confidence 36899999999999999987521 1235556665 466655542 33 1112232 223 445789999887443
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeCH------HH-HHHHHHHHHcCCCeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------EM-INKLKPVLHSLQWSTN 288 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~-~~~i~~l~~~l~W~~~ 288 (309)
+...++.++.|+|||||.+++++.. +. .+.++.+.+...++..
T Consensus 197 -------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 -------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp -------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred -------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 3455899999999999999998643 23 3345555555555543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-08 Score=92.96 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCeEEEeCC------cchH-HHHHhhcCCCEEEEecccCCcccHHHHHhcCcch-hhhhccccCCCCCCCcceeEecccc
Q 021643 167 VRNVMDMNA------SYGG-FAAALIDQPLWVMNVVPIDAPDTLSIIFDRGLIG-MYHDWCESFNTYPRTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GC------G~G~-faa~L~~~~v~v~~V~p~d~s~~l~~a~eRglig-~~~d~ce~~lpfP~sFDlVh~~~v~ 238 (309)
..+|||+|| |+|+ .++.+...+. .|+++|.++.+ .++.- ...|.. .++++++||+|+|+...
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~v-----~~v~~~i~gD~~--~~~~~~~fD~Vvsn~~~ 133 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDFV-----SDADSTLIGDCA--TVHTANKWDLIISDMYD 133 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCCB-----CSSSEEEESCGG--GCCCSSCEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCCC-----CCCEEEEECccc--cCCccCcccEEEEcCCc
Confidence 458999999 5576 2222222222 34455555331 22222 334532 25666899999997432
Q ss_pred cc--------ccccCCHHHHHHHHhhcccCCeEEEEEeCH-HHHHHHHHHHHcCCCe-eeee------cceEEEEEe
Q 021643 239 SD--------VTQRCDIADVAVEMDRILRPGGYVLVQDTL-EMINKLKPVLHSLQWS-TNIY------HDQFLVGKK 299 (309)
Q Consensus 239 ~~--------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~-~~~~~i~~l~~~l~W~-~~~~------~e~~li~~K 299 (309)
+. .......+.++.++.|+|||||.|++.... ...+++..+++...+. +... .|-+++++.
T Consensus 134 ~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 134 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVNASSSEAFLIGAN 210 (290)
T ss_dssp CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGGTTSSCEEEEEEE
T ss_pred cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcCCCchheEEecCC
Confidence 21 111112457999999999999999996522 2234566666665443 3222 366777665
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-09 Score=94.04 Aligned_cols=100 Identities=9% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhcccc--CCCCC----CCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCES--FNTYP----RTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce~--~lpfP----~sFDlV 232 (309)
..+|||+|||+|.++..|+.+.. ...|+++|.+ .+++.|.++ |+. ..++.-++. ..+++ ++||+|
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 46899999999999988876410 0246677776 577776654 331 111110111 11454 489999
Q ss_pred Eeccccccccc------------cCCHHHHHHHHhhcccCCeEEEEE
Q 021643 233 HSSFLLSDVTQ------------RCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 233 h~~~v~~~~~~------------~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+--+.+... ......++.++.|+|||||.+.+.
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 99855443220 011224567888888888876554
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.1e-09 Score=104.26 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc-hhh-hhccccC-CCCC-CCcceeEecc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI-GMY-HDWCESF-NTYP-RTYDLLHSSF 236 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli-g~~-~d~ce~~-lpfP-~sFDlVh~~~ 236 (309)
+..+|||+|||.|.++..|++.|. +|+++|.+ .++++|.. +|.. -.| +...|.. .+++ ++||+|.|..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 345899999999999999999986 46777887 57776654 4521 111 1111211 2466 8999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+|+.+...+ ..+..+.+.|+++|..++.
T Consensus 143 ~~ehv~~~~~~-~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 143 VFHHIVHLHGI-DEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp CHHHHHHHHCH-HHHHHHHHHHHHHSSEEEE
T ss_pred chhcCCCHHHH-HHHHHHHHHhccccceeeE
Confidence 99999864433 2345677888888866554
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-08 Score=95.81 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=66.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC------c----ch-hhhhccccCC-CCC-CCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG------L----IG-MYHDWCESFN-TYP-RTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg------l----ig-~~~d~ce~~l-pfP-~sFDl 231 (309)
..++|||+|||+|.++..|++..- +..|+.+|.+ .+++.+.++- + +. ...|..+ .+ .++ ++||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~-~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA-FLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH-HHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHH-HHHhccCCCccE
Confidence 357999999999999999998631 1356777777 5777777642 1 11 1122211 22 345 89999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 267 (309)
|+++... +.....+ ...++.++.|+|||||.+++.
T Consensus 198 Ii~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9986432 1111111 367999999999999999996
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-08 Score=91.81 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----------ch-hhhhccccCCCC-CCCccee
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IG-MYHDWCESFNTY-PRTYDLL 232 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----------ig-~~~d~ce~~lpf-P~sFDlV 232 (309)
...+|||+|||+|+++..+++..- +..++.+|.+ .+++.+.++-- +. ...|. ...++. +++||+|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~-~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA-SKFLENVTNTYDVI 155 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH-HHHHHHCCSCEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh-HHHHHhCCCCceEE
Confidence 347999999999999999987631 2356677776 57777776521 00 11121 112222 4899999
Q ss_pred EeccccccccccCCH--HHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSSFLLSDVTQRCDI--ADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~~v~~~~~~~~~~--~~~L~Em~RVLRPGG~lii~D 268 (309)
+++... ++.....+ ..++.++.|+|||||.+++..
T Consensus 156 i~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 156 IVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 996433 22221222 679999999999999999974
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-08 Score=94.17 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=65.1
Q ss_pred CeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCc------ch-hhhhccccCC-CCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGL------IG-MYHDWCESFN-TYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRgl------ig-~~~d~ce~~l-pfP-~sFDlVh~~~ 236 (309)
.+|||+|||+|+++.+|++ .+-. .++.+|.+ .+++.++++-- +. ...|.. ..+ .++ ++||+|++..
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~--~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~-~~l~~~~~~~fDvIi~D~ 167 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS--RNTVVELDAELARLSREWFDIPRAPRVKIRVDDAR-MVAESFTPASRDVIIRDV 167 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC--EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHH-HHHHTCCTTCEEEEEECC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc--EEEEEECCHHHHHHHHHhccccCCCceEEEECcHH-HHHhhccCCCCCEEEECC
Confidence 4899999999999999998 4321 45667776 58888877531 11 112211 122 466 8999999864
Q ss_pred cccccc-ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVT-QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
...... ..-.-..++.++.|+|||||.+++..
T Consensus 168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 332211 11112679999999999999999864
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=90.79 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=75.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCC-C-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTY-P-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpf-P-~sFDlVh~~~ 236 (309)
..+|||+| |+|.++..++..+.. ..|+.+|.+ .+++.+.++ |+ +. ...|. ...+|. . ++||+|+++.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDL-RKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCT-TSCCCTTTSSCBSEEEECC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChh-hhhchhhccCCccEEEECC
Confidence 46899999 999999998875321 246777886 688877765 44 21 22332 222553 3 6999999987
Q ss_pred ccccccccCCHHHHHHHHhhcccCCe-EEEEEeCH-----HHHHHHHHHHH-cCCCee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGG-YVLVQDTL-----EMINKLKPVLH-SLQWST 287 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG-~lii~D~~-----~~~~~i~~l~~-~l~W~~ 287 (309)
.+++.. ...++.++.|+||||| .+++.-.. .....+++++. .+..+.
T Consensus 250 p~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 303 (373)
T 2qm3_A 250 PETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVI 303 (373)
T ss_dssp CSSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEE
T ss_pred CCchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcch
Confidence 665331 5789999999999999 43554332 22356667666 666544
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-08 Score=89.95 Aligned_cols=98 Identities=12% Similarity=0.091 Sum_probs=61.4
Q ss_pred CCeEEEeCCcchHHHHHhhc--CCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCC-----CCCcce
Q 021643 167 VRNVMDMNASYGGFAAALID--QPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTY-----PRTYDL 231 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~--~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpf-----P~sFDl 231 (309)
..+|||+|||+|+++..|++ .+. ..|+++|.+ .+++.+.++ |+ +. ...|. . .++. +++||+
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~-~-~~~~~~~~~~~~fD~ 159 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADM-R-KYKDYLLKNEIFFDK 159 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH-H-HHHHHHHHTTCCEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh-H-hcchhhhhccccCCE
Confidence 45899999999999999886 231 145666776 466665544 43 11 11221 1 1222 478999
Q ss_pred eEecc------cccccc---------ccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSF------LLSDVT---------QRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~------v~~~~~---------~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+++- ++.+-+ .......+|.++.|+|||||+++++.
T Consensus 160 Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~st 211 (274)
T 3ajd_A 160 ILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYST 211 (274)
T ss_dssp EEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 99872 221100 00234679999999999999999975
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=91.76 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=68.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc-h-hhhhccccCCC--CC-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI-G-MYHDWCESFNT--YP-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli-g-~~~d~ce~~lp--fP-~sFDlVh~~- 235 (309)
..+|||+|||+|+++..|++..-. ..|+++|.+ .+++.+.++ |+. . ...|.. ..+ ++ ++||+|+++
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~--~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR--YPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT--CTHHHHTTCCEEEEEEEC
T ss_pred cCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchh--hchhhcccCCCCEEEEeC
Confidence 458999999999999999874211 245666766 466665554 441 1 112211 122 56 799999963
Q ss_pred -----cccccccc------cCCH-------HHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 236 -----FLLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 236 -----~v~~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
.++++.++ ..++ ..+|.++.+.|||||++++++. .+..+.++.+++
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~ 391 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHH
Confidence 33333221 0111 4789999999999999999862 233345555554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-07 Score=91.93 Aligned_cols=116 Identities=15% Similarity=0.188 Sum_probs=72.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCC-CCCcceeEeccc-
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTY-PRTYDLLHSSFL- 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpf-P~sFDlVh~~~v- 237 (309)
..+|||+|||+|+|+.+++..+.. |+.+|.+ .+++.+.++ |+.. ...|. ...++. ++.||+|+++--
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~-~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEA-LPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCH-HHHHHTCCCCEEEEEECCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccH-HHHHHHhcCCCCEEEECCCc
Confidence 358999999999999999987653 6777887 577776654 4321 11221 112332 544999998622
Q ss_pred ccccc-----ccCCHHHHHHHHhhcccCCeEEEEEeC------HHHHHHHHHHHHcCCCe
Q 021643 238 LSDVT-----QRCDIADVAVEMDRILRPGGYVLVQDT------LEMINKLKPVLHSLQWS 286 (309)
Q Consensus 238 ~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D~------~~~~~~i~~l~~~l~W~ 286 (309)
|..-. ...+..+++.++.|+|||||++++... .+..+.++..+....-+
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~ 350 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR 350 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence 11000 001345789999999999999997643 23455566665444433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=92.18 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=70.5
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC--CC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT--YP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp--fP-~sFDlVh~ 234 (309)
..+|||+|||+|+++..|+.. +- ...|+++|.+ .+++.+.++ |+ +. ...|.. ..+ |+ ++||+|++
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~-~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~--~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKN-KGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR--KAPEIIGEEVADKVLL 336 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTT--CCSSSSCSSCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChh--hcchhhccCCCCEEEE
Confidence 458999999999999999873 11 0146677777 566666554 54 11 122321 233 77 89999996
Q ss_pred c------cccccccc------cCCH-------HHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc
Q 021643 235 S------FLLSDVTQ------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS 282 (309)
Q Consensus 235 ~------~v~~~~~~------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~ 282 (309)
+ .++++.++ ..++ ..+|.++.|+|||||.+++++. .+..+.++.+++.
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~ 407 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2 33332221 1122 5789999999999999998753 2233445555544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=91.27 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=73.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc--hhh-hhccccCCCC----CCCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI--GMY-HDWCESFNTY----PRTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli--g~~-~d~ce~~lpf----P~sFDlVh~ 234 (309)
..+|||+|||+|+|+..++.. ...|.++|.+ .+++.+.+. |+. ..+ .| ++..++. +++||+|++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d-~~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN-AFDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESC-HHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECC-HHHHHHHHHhcCCCeeEEEE
Confidence 358999999999999999876 3467777877 566666554 331 111 11 1112221 378999998
Q ss_pred cccccccc------ccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCCCee
Q 021643 235 SFLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQWST 287 (309)
Q Consensus 235 ~~v~~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W~~ 287 (309)
+--..... ...+...++.++.|+|+|||+++++... ...+.+++.+.....+.
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 350 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 350 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 52111000 0023567899999999999999998643 23455555555554443
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-07 Score=91.13 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=71.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch----hhhhccccCCC-C---CCCcceeE
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG----MYHDWCESFNT-Y---PRTYDLLH 233 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig----~~~d~ce~~lp-f---P~sFDlVh 233 (309)
.+|||+|||+|+|+..++..+. ..|+++|.+ .+++.+.+. |+ .. ...|. ...++ + ..+||+|+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~-~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV-FKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCH-HHHHHHHHHTTCCEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH-HHHHHHHHhcCCCCCEEE
Confidence 5899999999999999998752 245666776 466665543 33 11 11121 11122 1 36899999
Q ss_pred eccccc-----ccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCCC
Q 021643 234 SSFLLS-----DVT-QRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQW 285 (309)
Q Consensus 234 ~~~v~~-----~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W 285 (309)
++--.. +.. ...+...++.++.++|+|||+++++... +..+.+++.+.....
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 862110 010 1134678999999999999999997543 345555555544443
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-07 Score=88.63 Aligned_cols=117 Identities=12% Similarity=0.096 Sum_probs=73.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCC----EEEEecccCCc-ccHHHHHhc----Ccc-hh-hhhccccCCCCC-CCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPL----WVMNVVPIDAP-DTLSIIFDR----GLI-GM-YHDWCESFNTYP-RTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v----~v~~V~p~d~s-~~l~~a~eR----gli-g~-~~d~ce~~lpfP-~sFDlVh 233 (309)
...+|||.|||+|+|+..+++... ....+.++|.+ .++.+|..+ |+. .. ..| ...+.+ ..||+|+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D---~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GLANLLVDPVDVVI 206 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC---TTSCCCCCCEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECC---CCCccccCCccEEE
Confidence 346899999999999988875310 11356777776 466666553 431 11 112 233456 8999999
Q ss_pred eccccccccccC--------------CH-HHHHHHHhhcccCCeEEEEEeC-----HHHHHHHHHHHHcCCC
Q 021643 234 SSFLLSDVTQRC--------------DI-ADVAVEMDRILRPGGYVLVQDT-----LEMINKLKPVLHSLQW 285 (309)
Q Consensus 234 ~~~v~~~~~~~~--------------~~-~~~L~Em~RVLRPGG~lii~D~-----~~~~~~i~~l~~~l~W 285 (309)
++--|.++.... +. ..++.++.+.|||||++++... ...-.++++.+..-.|
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGH 278 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEE
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCe
Confidence 997665542110 11 2589999999999999888752 2223556555544334
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=85.73 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----------ch-hhhhccccCCCCCCCcceeE
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----------IG-MYHDWCESFNTYPRTYDLLH 233 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----------ig-~~~d~ce~~lpfP~sFDlVh 233 (309)
..++|||+|||+|+++..+++.+ ..++.+|.+ .+++.+.++-- +. ...| ...|.++||+|+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D----~~~~~~~fD~Ii 144 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQL----LDLDIKKYDLIF 144 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSG----GGSCCCCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEech----HHHHHhhCCEEE
Confidence 34789999999999999998874 356777776 56666654311 00 1112 122228899999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++. .+ ...++.++.|+|||||.+++..
T Consensus 145 ~d~-----~d---p~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EP---DIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CC---CHHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CC---hHHHHHHHHHhcCCCcEEEEEc
Confidence 862 11 2348999999999999999963
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-07 Score=90.98 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=72.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch-----hhhhccccCCCC----CCCcceeE
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG-----MYHDWCESFNTY----PRTYDLLH 233 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig-----~~~d~ce~~lpf----P~sFDlVh 233 (309)
.+|||+|||+|+|+..++..+. ..|+.+|.+ .+++.|.+. |+.. ...| +...++. ..+||+|+
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D-~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD-VFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESC-HHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECC-HHHHHHHHHHhCCCccEEE
Confidence 5899999999999999998653 145666666 466666543 3311 1112 1112222 25899999
Q ss_pred ecccc-----ccccc-cCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCCCe
Q 021643 234 SSFLL-----SDVTQ-RCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQWS 286 (309)
Q Consensus 234 ~~~v~-----~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W~ 286 (309)
++--. .+..+ .....+++.++.|+|+|||+++++... ...+.++..+.....+
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 85221 11111 112455788889999999999998542 3566667777776665
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-07 Score=93.10 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc--h-hhhhccccCCC--CCCCcceeEe
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI--G-MYHDWCESFNT--YPRTYDLLHS 234 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli--g-~~~d~ce~~lp--fP~sFDlVh~ 234 (309)
...+|||+|||+|+.+..|++. +-. ..|+++|.+ .+++.+.++ |+. . ...|. . .++ ++++||.|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~-~-~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDG-R-VFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS-T-THHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH-H-HhhhhccccCCEEEE
Confidence 3468999999999999998873 100 146677877 566666554 441 1 11221 1 122 3489999997
Q ss_pred c------cccccccccC-------------CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 235 S------FLLSDVTQRC-------------DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 235 ~------~v~~~~~~~~-------------~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+ .++.+.++.. .-.++|.++.|+|||||++++++.
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3 2333222100 024689999999999999999753
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=4.7e-07 Score=82.08 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=80.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-C-CcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-R-TYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~-sFDlVh~~~ 236 (309)
.+|||+|||+|.++.+|+..+. ...|.++|.+ .+++.|.+. |+.. ...|. ..+++ + .||+|+..+
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~---l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG---LAAFEETDQVSVITIAG 92 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch---hhhcccCcCCCEEEEcC
Confidence 5899999999999999998752 2356777776 466666543 4421 12221 23566 4 699988654
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
.--. -+.++|.+..+.|+|||+++++-. .-...+++.+....|...-.
T Consensus 93 ~Gg~-----~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 93 MGGR-----LIARILEEGLGKLANVERLILQPN-NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp ECHH-----HHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHHHTTEEEEEE
T ss_pred CChH-----HHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHHHCCCEEEEE
Confidence 3221 256789999999999999999866 35678888888889986544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-07 Score=86.74 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=73.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
...+|||+|||+|.++..++..+.+ ..|.++|.+ .+++.|.++ |+. . ...|. ..++++ ++||+|+++
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~--~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA--TQLSQYVDSVDFAISN 293 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG--GGGGGTCSCEEEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh--hhCCcccCCcCEEEEC
Confidence 3468999999999999999886531 145667776 577776654 441 1 11232 136777 999999997
Q ss_pred ccccccc-ccCC----HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVT-QRCD----IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~-~~~~----~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
--+..-. .... ...++.++.|+| +|+.+++....+. +++.+.+..|+...
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~~~~~---~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFITTEKKA---IEEAIAENGFEIIH 348 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEESCHHH---HHHHHHHTTEEEEE
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEECCHHH---HHHHHHHcCCEEEE
Confidence 5543211 1111 266889999999 5555666655543 34466677777543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=87.07 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEecccc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLL-- 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~-- 238 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ .+++.+.++ |+.....-.+...+.++ .+||+|+++..+
T Consensus 29 ~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 29 TDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQI 105 (285)
T ss_dssp TCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGGG
T ss_pred CCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEecCccc
Confidence 46899999999999999998754 45666776 577777664 22111110111233344 589999997433
Q ss_pred ---------ccccccCCHH-HHHHHH--hhcccCCeEEEE
Q 021643 239 ---------SDVTQRCDIA-DVAVEM--DRILRPGGYVLV 266 (309)
Q Consensus 239 ---------~~~~~~~~~~-~~L~Em--~RVLRPGG~lii 266 (309)
+|........ .+-.|+ .|+|||||.++.
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~ 145 (285)
T 1zq9_A 106 SSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYC 145 (285)
T ss_dssp HHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCS
T ss_pred chHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccc
Confidence 2222111000 000455 479999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-07 Score=83.47 Aligned_cols=135 Identities=12% Similarity=0.154 Sum_probs=83.4
Q ss_pred hhhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcch
Q 021643 139 EAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIG 213 (309)
Q Consensus 139 e~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig 213 (309)
..|.......+.++.+ ++ .. ..+|||+|||+|.|+..++.++. ..|.++|.+ .+++.+.+ .|+..
T Consensus 106 ~~f~~~~~~er~ri~~-~~-----~~--g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~ 175 (278)
T 3k6r_A 106 IMFSPANVKERVRMAK-VA-----KP--DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVED 175 (278)
T ss_dssp SCCCGGGHHHHHHHHH-HC-----CT--TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred eEEcCCcHHHHHHHHH-hc-----CC--CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCC
Confidence 3566666666666654 32 22 35899999999999988887653 134556665 34444433 34422
Q ss_pred hhhhccccCCCCC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-------HHHHHHHHHHHHcCC
Q 021643 214 MYHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSLQ 284 (309)
Q Consensus 214 ~~~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l~ 284 (309)
...-.+....-|+ +.||.|+.+.-.. ...+|.+..++|||||++.+-+. .+..+.++++++...
T Consensus 176 ~v~~~~~D~~~~~~~~~~D~Vi~~~p~~-------~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 176 RMSAYNMDNRDFPGENIADRILMGYVVR-------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYG 248 (278)
T ss_dssp TEEEECSCTTTCCCCSCEEEEEECCCSS-------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTT
T ss_pred cEEEEeCcHHHhccccCCCEEEECCCCc-------HHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcC
Confidence 1111111122333 8999998763221 13468888899999999877432 235678888898888
Q ss_pred Ceeeee
Q 021643 285 WSTNIY 290 (309)
Q Consensus 285 W~~~~~ 290 (309)
+++...
T Consensus 249 ~~v~~~ 254 (278)
T 3k6r_A 249 YDVEKL 254 (278)
T ss_dssp CEEEEE
T ss_pred CcEEEE
Confidence 887543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=79.92 Aligned_cols=127 Identities=15% Similarity=-0.021 Sum_probs=85.9
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEeccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
+...+|||+|||+|-|+.++. ... .+.+.|.+ .+++++.+. |... ...|. ...|.|.+||+|.+.-+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~--~~~~~~~~~DvvLllk~ 177 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDV--LCAPPAEAGDLALIFKL 177 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT--TTSCCCCBCSEEEEESC
T ss_pred CCCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec--ccCCCCCCcchHHHHHH
Confidence 456899999999999999887 222 35566666 577777665 3211 11221 23566699999999977
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC--H---------HHHHHHHHHHHcCCCeeeee---cceEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT--L---------EMINKLKPVLHSLQWSTNIY---HDQFLVGKK 299 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~--~---------~~~~~i~~l~~~l~W~~~~~---~e~~li~~K 299 (309)
++|+.+... ..+..+.+.|+|+|.+|-.+. . .+.+..+..+..--|.+... .|=+.+.+|
T Consensus 178 lh~LE~q~~--~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y~~~~e~~~~~~~~~~~~~~~~nEl~~~i~~ 251 (253)
T 3frh_A 178 LPLLEREQA--GSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELIYLIKK 251 (253)
T ss_dssp HHHHHHHST--THHHHHHHHCBCSEEEEEEECC-----------CHHHHHHHHSCTTEEEEEEEEETTEEEEEEEE
T ss_pred HHHhhhhch--hhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHHHHHHHHHhhccchhhhheecCceEEEEEec
Confidence 887753322 144488889999999999872 1 25667777777777876544 566666665
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-07 Score=84.50 Aligned_cols=129 Identities=10% Similarity=0.030 Sum_probs=84.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEecc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
+...+|||+|||+|-|+..+... +. ..+.++|.. .+++++.++ |+.. ...|. ...+.|..||++.+.-
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~--a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~--~~~~p~~~~DvaL~lk 206 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAE--TVYIASDIDARLVGFVDEALTRLNVPHRTNVADL--LEDRLDEPADVTLLLK 206 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTT--CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT--TTSCCCSCCSEEEETT
T ss_pred CCCceeeeeccCccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee--cccCCCCCcchHHHHH
Confidence 33679999999999999888764 21 234556666 577777655 4321 11221 1123349999999999
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeC-----------HHHHHHHHHHHHcCCCeeeee---cceEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-----------LEMINKLKPVLHSLQWSTNIY---HDQFLVGKK 299 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-----------~~~~~~i~~l~~~l~W~~~~~---~e~~li~~K 299 (309)
+++|+.+... ..+.++...|+|||.||-.+. ..+.+..+..+..-.|..... .|-+.|.+|
T Consensus 207 ti~~Le~q~k--g~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~nEl~y~i~k 281 (281)
T 3lcv_B 207 TLPCLETQQR--GSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELIYVIQK 281 (281)
T ss_dssp CHHHHHHHST--THHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEC-
T ss_pred HHHHhhhhhh--HHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeecCeeEEEecC
Confidence 9998864321 234499999999999999887 135677788776666654332 444544443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-07 Score=97.77 Aligned_cols=100 Identities=16% Similarity=0.262 Sum_probs=67.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc----h-hhhhccccCCCCC-CCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI----G-MYHDWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli----g-~~~d~ce~~lpfP-~sFDlVh~~~ 236 (309)
.+|||+|||+|+|+.+++..+. ..|+.+|.+ .+++.+.+. |+. . ...| +...++.. ++||+|+++-
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D-~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQAD-CLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESC-HHHHHHHCCCCEEEEEECC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-HHHHHHhcCCCccEEEECC
Confidence 5899999999999999887664 246777887 577776654 332 1 1112 11234445 8999999853
Q ss_pred -cccc-------ccccCCHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 237 -LLSD-------VTQRCDIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 237 -v~~~-------~~~~~~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
.|.. +....+..+++.++.|+|||||+++++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 1110 111123667899999999999999998765
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-07 Score=88.87 Aligned_cols=115 Identities=12% Similarity=0.038 Sum_probs=69.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCC----CCCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTY----PRTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpf----P~sFDlVh 233 (309)
..+|||+|||+|+|+..++..+. ..|+++|.+ .+++.+.+. |+. . ...|. ...++. .++||+|+
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA-FEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH-HHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH-HHHHHHHHhhCCCCCEEE
Confidence 46899999999999999998753 245666666 466555443 331 1 11121 112221 36899999
Q ss_pred ecccccccc------ccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCC
Q 021643 234 SSFLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQ 284 (309)
Q Consensus 234 ~~~v~~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~ 284 (309)
++--..... ...+...++.++.|+|||||++++.... ...+.+.+.+....
T Consensus 295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~ 357 (396)
T 2as0_A 295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG 357 (396)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 852111100 0023567899999999999999887542 23444554544443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=79.71 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=80.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
.+|||+|||+|.++.+|+..+. ...|.++|.+ .+++.|.+. |+.. ...|.. ....| ..||+|+..+.
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l--~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGL--SAFEEADNIDTITICGM 99 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG--GGCCGGGCCCEEEEEEE
T ss_pred CEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--hccccccccCEEEEeCC
Confidence 5899999999999999998752 2356777777 466666543 4421 112321 12234 47999876554
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
--. -+.++|.+..+.|+++|+||++-... .+.+++.+....|...-.
T Consensus 100 Gg~-----lI~~IL~~~~~~l~~~~~lIlqp~~~-~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 100 GGR-----LIADILNNDIDKLQHVKTLVLQPNNR-EDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp CHH-----HHHHHHHHTGGGGTTCCEEEEEESSC-HHHHHHHHHHTTEEEEEE
T ss_pred chH-----HHHHHHHHHHHHhCcCCEEEEECCCC-hHHHHHHHHHCCCEEEEE
Confidence 432 25678999999999999999997644 678888888899987554
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-07 Score=91.84 Aligned_cols=45 Identities=29% Similarity=0.470 Sum_probs=37.1
Q ss_pred CCCC-CCcceeEeccccccccccC-----------------------------------CHHHHHHHHhhcccCCeEEEE
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQRC-----------------------------------DIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~~~-----------------------------------~~~~~L~Em~RVLRPGG~lii 266 (309)
-.|| +|||+||++.+||.+.+.. |+..+|....|.|||||.+++
T Consensus 144 rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl 223 (374)
T 3b5i_A 144 RLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFL 223 (374)
T ss_dssp CCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4588 9999999999998665221 456679999999999999999
Q ss_pred E
Q 021643 267 Q 267 (309)
Q Consensus 267 ~ 267 (309)
+
T Consensus 224 ~ 224 (374)
T 3b5i_A 224 V 224 (374)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-07 Score=92.49 Aligned_cols=115 Identities=12% Similarity=0.144 Sum_probs=69.5
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc-hh-hhhccccCCC-CCCCcceeEec--
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI-GM-YHDWCESFNT-YPRTYDLLHSS-- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli-g~-~~d~ce~~lp-fP~sFDlVh~~-- 235 (309)
..+|||+|||+|+.+..|++. +-. ..|+++|.+ .+++.+.++ |+. .. ..|. ..... ++++||+|+++
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~-g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da-~~l~~~~~~~FD~Il~D~P 179 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGK-GLLLANEVDGKRVRGLLENVERWGAPLAVTQAPP-RALAEAFGTYFHRVLLDAP 179 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTC-SEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCH-HHHHHHHCSCEEEEEEECC
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCH-HHhhhhccccCCEEEECCC
Confidence 468999999999999998863 110 146677877 566666554 432 11 1121 11122 34899999952
Q ss_pred ----ccccccccc------CCH-------HHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHcC
Q 021643 236 ----FLLSDVTQR------CDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSL 283 (309)
Q Consensus 236 ----~v~~~~~~~------~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l 283 (309)
.++.+-++. .++ .++|.++.|+|||||++++++. .+.-+.++.++++.
T Consensus 180 cSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~ 248 (464)
T 3m6w_A 180 CSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH 248 (464)
T ss_dssp CCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred cCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC
Confidence 333322211 111 6789999999999999999753 23334455555443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-06 Score=78.63 Aligned_cols=111 Identities=9% Similarity=0.055 Sum_probs=77.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCC-CC-CcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTY-PR-TYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpf-P~-sFDlVh~~~ 236 (309)
.+|||+|||+|.++.+|+..+. ...|.++|.+ .+++.|.++ |+.. ...|. ..++ |+ .||+|+..+
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~---l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG---LAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCCGGGCCCEEEEEE
T ss_pred CEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch---hhccCccccccEEEEeC
Confidence 5899999999999999998752 2356777777 467666654 5421 11222 2233 44 699988654
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
.--. -+.++|.+..+.|+|+|+||++-.. -...+++.+....|...
T Consensus 99 mGg~-----lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 99 MGGT-----LIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp ECHH-----HHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHHHTEEEE
T ss_pred CchH-----HHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHHCCCEEE
Confidence 4321 2567899999999999999999754 35677888888888864
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.1e-07 Score=85.59 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCCCCcceeEecccccc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSD-- 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~-- 240 (309)
..+|||+|||+|+|+.+++++ .. ++.++|.+ .+++.| ..+.-...|..+ .+..+.||+|+++=-+..
T Consensus 40 ~~~vLD~gcGtG~~~~~~~~~~~~~~---~i~gvDi~~~~~~~a--~~~~~~~~D~~~--~~~~~~fD~Ii~NPPy~~~~ 112 (421)
T 2ih2_A 40 GGRVLEPACAHGPFLRAFREAHGTAY---RFVGVEIDPKALDLP--PWAEGILADFLL--WEPGEAFDLILGNPPYGIVG 112 (421)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCS---EEEEEESCTTTCCCC--TTEEEEESCGGG--CCCSSCEEEEEECCCCCCBS
T ss_pred CCEEEECCCCChHHHHHHHHHhCCCC---eEEEEECCHHHHHhC--CCCcEEeCChhh--cCccCCCCEEEECcCccCcc
Confidence 348999999999999999863 22 34444444 233333 222111222211 122279999999622211
Q ss_pred --------cccc----------------CCHHHHHHHHhhcccCCeEEEEEeCHH-----HHHHHHHHHHcCCC
Q 021643 241 --------VTQR----------------CDIADVAVEMDRILRPGGYVLVQDTLE-----MINKLKPVLHSLQW 285 (309)
Q Consensus 241 --------~~~~----------------~~~~~~L~Em~RVLRPGG~lii~D~~~-----~~~~i~~l~~~l~W 285 (309)
..+. .....++..+.++|||||++++..... ..+++++.+...++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 113 EASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp CTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred cccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 1000 012257899999999999988875543 34567776655444
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-07 Score=90.10 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Ccc--hh-hhhccccCCC-CCCCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GLI--GM-YHDWCESFNT-YPRTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gli--g~-~~d~ce~~lp-fP~sFDlVh~~ 235 (309)
..+|||+|||+|+.+..|++. +. ..|+++|.+ .+++.+.++ |+. .+ ..|. ..... ++++||+|+++
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~--g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da-~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGK--GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP-AELVPHFSGFFDRIVVD 182 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTC--SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH-HHHHHHHTTCEEEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH-HHhhhhccccCCEEEEC
Confidence 458999999999999888863 21 135667777 466555443 441 11 1121 11122 34899999974
Q ss_pred ------cccccccc------cCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHcCCC
Q 021643 236 ------FLLSDVTQ------RCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSLQW 285 (309)
Q Consensus 236 ------~v~~~~~~------~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l~W 285 (309)
.++.+-++ ..+ ..++|.++.|+|||||++++++. .+..+.|+.++++..+
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~ 255 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPV 255 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCC
Confidence 22322110 000 12689999999999999999753 2334556666655443
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.7e-06 Score=80.86 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=68.9
Q ss_pred CCeEEEeCCcchHHHHHhhcCC------------CEEEEecccCCc-ccHHHHHh----cCcch-hhhhccccCCCCC--
Q 021643 167 VRNVMDMNASYGGFAAALIDQP------------LWVMNVVPIDAP-DTLSIIFD----RGLIG-MYHDWCESFNTYP-- 226 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~------------v~v~~V~p~d~s-~~l~~a~e----Rglig-~~~d~ce~~lpfP-- 226 (309)
..+|||.|||+|+|...+.+.- ....++.++|.. .++..|.. +|+.. ..+-.+...+..+
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~ 251 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPS 251 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCS
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCccc
Confidence 4589999999999987766420 000123444544 45555543 34310 0100111223333
Q ss_pred CCcceeEeccccccccccCC--------------HHHHHHHHhhcccCCeEEEEEeCHHHH------HHHHH-HHHcCCC
Q 021643 227 RTYDLLHSSFLLSDVTQRCD--------------IADVAVEMDRILRPGGYVLVQDTLEMI------NKLKP-VLHSLQW 285 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~--------------~~~~L~Em~RVLRPGG~lii~D~~~~~------~~i~~-l~~~l~W 285 (309)
..||+|+++--|.+...... -..+++++.|.|||||++++......+ .++++ |.+....
T Consensus 252 ~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l 331 (445)
T 2okc_A 252 TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNL 331 (445)
T ss_dssp SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEE
T ss_pred CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhcCcE
Confidence 68999999866654321110 136899999999999998877654432 34554 4544444
Q ss_pred ee
Q 021643 286 ST 287 (309)
Q Consensus 286 ~~ 287 (309)
+.
T Consensus 332 ~~ 333 (445)
T 2okc_A 332 HT 333 (445)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.4e-06 Score=80.60 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc---chhh-hhccccCCCCCCCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL---IGMY-HDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~-~d~ce~~lpfP~sFDlVh~~~v 237 (309)
..+|||+|||+|.|+.. +.... .|.++|.+ .+++.+.+. |+ +..+ .| +. .+.++||+|+++--
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D-~~---~~~~~fD~Vi~dpP 267 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD-VR---EVDVKGNRVIMNLP 267 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC-GG---GCCCCEEEEEECCT
T ss_pred CCEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC-hH---HhcCCCcEEEECCc
Confidence 35899999999999999 77433 45666766 466655543 33 1111 12 11 12289999998621
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.. ...++.++.|+|+|||++++.+.
T Consensus 268 ~~-------~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 268 KF-------AHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp TT-------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred Hh-------HHHHHHHHHHHcCCCCEEEEEEe
Confidence 11 12589999999999999988653
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.2e-06 Score=80.00 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=70.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhcccc--CCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCES--FNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~--~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|.|+..|++... .|.++|.+ .+++.|.++ |+ +. ...|..+. .++++ ++||+|+++
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 35899999999999999998753 45666776 567666543 33 11 11232111 13466 799999875
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~ 288 (309)
- .+.....++..+.+ ++|++.++++-....+.+--.++..-.|+..
T Consensus 364 P------Pr~g~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~ 409 (433)
T 1uwv_A 364 P------ARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIA 409 (433)
T ss_dssp C------CTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred C------CCccHHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEE
Confidence 2 22223345555543 8999999999888766554444444456543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-06 Score=80.90 Aligned_cols=95 Identities=16% Similarity=0.180 Sum_probs=61.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-chhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.|+..|++.+. .|.++|.+ .+++.|.++ |+ +..+. .....++ .+||+|+++--.
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~---~d~~~~~~~~fD~Vv~dPPr- 363 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEV---ASDREVSVKGFDTVIVDPPR- 363 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEE---CCTTTCCCTTCSEEEECCCT-
T ss_pred CCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEE---CChHHcCccCCCEEEEcCCc-
Confidence 46899999999999999998754 45666776 566666543 33 11111 1122233 589999985322
Q ss_pred cccccCCH-HHHHHHHhhcccCCeEEEEEeCHHHHH
Q 021643 240 DVTQRCDI-ADVAVEMDRILRPGGYVLVQDTLEMIN 274 (309)
Q Consensus 240 ~~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~~~~ 274 (309)
.+. ..++..+ +.|+|||.++++-....+.
T Consensus 364 -----~g~~~~~~~~l-~~l~p~givyvsc~p~tla 393 (425)
T 2jjq_A 364 -----AGLHPRLVKRL-NREKPGVIVYVSCNPETFA 393 (425)
T ss_dssp -----TCSCHHHHHHH-HHHCCSEEEEEESCHHHHH
T ss_pred -----cchHHHHHHHH-HhcCCCcEEEEECChHHHH
Confidence 122 2345555 5699999999997776543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-06 Score=82.71 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=62.9
Q ss_pred CCeEEEeCCcchHHHHHhhcC---------------CCEEEEecccCCc-ccHHHHHhc--------Cc---chhhhhcc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---------------PLWVMNVVPIDAP-DTLSIIFDR--------GL---IGMYHDWC 219 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---------------~v~v~~V~p~d~s-~~l~~a~eR--------gl---ig~~~d~c 219 (309)
.-+|+|+||++|..+..+.+. +.-.+.|.-.|.+ |.....+.+ +. .|+-..+-
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999876554433 2223455566666 444443332 11 11111110
Q ss_pred ccCCCCC-CCcceeEeccccccccccC------------------------------CHHHHHHHHhhcccCCeEEEEE
Q 021643 220 ESFNTYP-RTYDLLHSSFLLSDVTQRC------------------------------DIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 220 e~~lpfP-~sFDlVh~~~v~~~~~~~~------------------------------~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.-.|| +|||+||++.+||-+.+.. |+..+|.-..|.|+|||.+++.
T Consensus 132 --~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 132 --GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp --SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred --hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 25789 9999999999997544211 2345588889999999999996
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-06 Score=78.63 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|.++..|++++. .|.++|.+ .+++.+.++ |+ +. ...| .+.++ .+||+|+++..
T Consensus 43 ~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D----~~~~~~~~~D~Vv~n~p 115 (299)
T 2h1r_A 43 SDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGD----AIKTVFPKFDVCTANIP 115 (299)
T ss_dssp TCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC--------CCSSCCCCCSEEEEECC
T ss_pred cCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECc----hhhCCcccCCEEEEcCC
Confidence 46899999999999999998764 46677777 577776654 32 11 1222 34556 79999999744
Q ss_pred cccccccCCHHHHH---------------HHHhhcccCCeE
Q 021643 238 LSDVTQRCDIADVA---------------VEMDRILRPGGY 263 (309)
Q Consensus 238 ~~~~~~~~~~~~~L---------------~Em~RVLRPGG~ 263 (309)
++ +.. ..+..+| .+..|+++|+|.
T Consensus 116 y~-~~~-~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~ 154 (299)
T 2h1r_A 116 YK-ISS-PLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD 154 (299)
T ss_dssp GG-GHH-HHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred cc-ccc-HHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence 33 221 1122333 346788888774
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5e-06 Score=80.89 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred CCCC-CCcceeEeccccccccccC-CHH-----------------------------------HHHHHHhhcccCCeEEE
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQRC-DIA-----------------------------------DVAVEMDRILRPGGYVL 265 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~~~-~~~-----------------------------------~~L~Em~RVLRPGG~li 265 (309)
-.|| +|||+||++.+||-+.+.. .+. .+|.-..|.|+|||.++
T Consensus 143 rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mv 222 (384)
T 2efj_A 143 RLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRML 222 (384)
T ss_dssp CCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 5788 9999999999998654322 221 12555589999999999
Q ss_pred EE
Q 021643 266 VQ 267 (309)
Q Consensus 266 i~ 267 (309)
+.
T Consensus 223 l~ 224 (384)
T 2efj_A 223 LT 224 (384)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-08 Score=87.79 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC--CCcceeEecc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP--RTYDLLHSSF-- 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP--~sFDlVh~~~-- 236 (309)
..+|||+|||+|.++..|++++. .++++|.+ .+++.+.++- +.-...|. ..++++ ++| .|+++-
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~--~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI--LQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCC--TTTTCCCSSEE-EEEEECCS
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECCh--hhcCcccCCCc-EEEEeCCc
Confidence 46899999999999999998763 46667776 4555554431 11122232 134565 578 666652
Q ss_pred ---------ccccccccCCHHHHH----HHHhhcccCCeEEEEEe
Q 021643 237 ---------LLSDVTQRCDIADVA----VEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 ---------v~~~~~~~~~~~~~L----~Em~RVLRPGG~lii~D 268 (309)
++.|... ...++ .++.|+|||||.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~---~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 104 HLSTQIIKKVVFESRA---SDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSCHHHHHHHHHHCCC---EEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cccHHHHHHHHhCCCC---CeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 1122111 11244 66999999999876643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-06 Score=79.87 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=63.1
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEE-EE-ecccCCc-ccHHHHHhcCc--chhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWV-MN-VVPIDAP-DTLSIIFDRGL--IGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v-~~-V~p~d~s-~~l~~a~eRgl--ig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|+|+...+.+ ++.. .. +++.|.+ ..+.. ...|. +....+ + ....++ +.||+|.|.....
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~~ii~~~~~-~-dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGWNIITFKDK-T-DIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTGGGEEEECS-C-CTTTSCCCCCSEEEECCCCC
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCCCeEEEecc-c-eehhcCCCCccEEEecCccC
Confidence 358999999999999977664 4311 11 2233332 10000 00111 111111 1 135677 8999999986554
Q ss_pred ---cccccCCHHHHHHHHhhcccCC-eEEEEEeCH-------HHHHHHHHHHHcC
Q 021643 240 ---DVTQRCDIADVAVEMDRILRPG-GYVLVQDTL-------EMINKLKPVLHSL 283 (309)
Q Consensus 240 ---~~~~~~~~~~~L~Em~RVLRPG-G~lii~D~~-------~~~~~i~~l~~~l 283 (309)
++.+......+|..+.++|||| |.|++.-.. +.+..++..-++.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F~~V 206 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRFGGT 206 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHCCE
T ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhcCCE
Confidence 1111111123578889999999 999996433 3455555554443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.6e-06 Score=75.89 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|++++. .++++|.+ .+++.+.++
T Consensus 31 ~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~ 71 (244)
T 1qam_A 31 HDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENK 71 (244)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHH
T ss_pred CCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHh
Confidence 46899999999999999998763 56777887 688887765
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2e-05 Score=76.07 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc-------------------Cc--chhh-hhccccC
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR-------------------GL--IGMY-HDWCESF 222 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR-------------------gl--ig~~-~d~ce~~ 222 (309)
..+|||+|||+|.++..++.+ +. ..|+.+|.+ ++++.+.+. |+ +..+ .|. ...
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da-~~~ 124 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-NRL 124 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-HHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH-HHH
Confidence 358999999999999888875 32 135666666 455554432 33 1111 121 111
Q ss_pred CC-CCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 223 NT-YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 223 lp-fP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+. .++.||+|+..- .+....++....|.|||||.++++
T Consensus 125 ~~~~~~~fD~I~lDP-------~~~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 125 MAERHRYFHFIDLDP-------FGSPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHHSTTCEEEEEECC-------SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHhccCCCCEEEeCC-------CCCHHHHHHHHHHhcCCCCEEEEE
Confidence 11 136899998542 123356899999999999998886
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00015 Score=74.81 Aligned_cols=127 Identities=15% Similarity=0.080 Sum_probs=70.9
Q ss_pred chhhhcccchhHHHHHHH--HHH-hccC--CCCCCCCeEEEeCCcchHH---HHHhhcC---CCEEEEecccCCc-ccHH
Q 021643 137 SEEAFNKDTTHWYALVSD--VYV-GGLA--INWSSVRNVMDMNASYGGF---AAALIDQ---PLWVMNVVPIDAP-DTLS 204 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~--~y~-~~l~--i~~~~~r~VLD~GCG~G~f---aa~L~~~---~v~v~~V~p~d~s-~~l~ 204 (309)
+-|.|++|.-+-...-.. ..+ +... -...+...|||+|||+|-+ +..-.++ .+.|..|...... .+++
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~ 402 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLE 402 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHH
T ss_pred hhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH
Confidence 557899987665443321 122 1111 1112335799999999976 3222222 2233333332222 2556
Q ss_pred HHHhcCc---chhhhhccccCCCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 205 IIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 205 ~a~eRgl---ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
...+.|+ +.+++.-.| ....|..+|+|++-..=+.+ ..+.+..+|.-.+|.|||||.++
T Consensus 403 ~v~~N~~~dkVtVI~gd~e-ev~LPEKVDIIVSEwMG~fL-l~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 403 NWQFEEWGSQVTVVSSDMR-EWVAPEKADIIVSELLGSFA-DNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHTTGGGEEEEESCTT-TCCCSSCEEEEECCCCBTTB-GGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHhccCCCeEEEEeCcce-eccCCcccCEEEEEcCcccc-cccCCHHHHHHHHHhcCCCcEEc
Confidence 6666665 333332222 35667889999985332222 23346678888999999999854
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=7.2e-05 Score=72.79 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=59.4
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcch----hhhhccccCCC--CCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIG----MYHDWCESFNT--YPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig----~~~d~ce~~lp--fP~sFDlVh~~~ 236 (309)
.+|||++||+|.|+..++.+.--+..|+.+|.+ .+++.+.+ .|+.. .+..-+...+. +++.||+|+++-
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 589999999999999888731112356777776 45544443 24321 11110111222 347899998764
Q ss_pred ccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 237 LLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 237 v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+ +...+++....+.|+|||+++++-
T Consensus 134 -~------g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 134 -F------GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp -S------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred -C------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 223568899999999999988863
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.5e-05 Score=71.35 Aligned_cols=134 Identities=9% Similarity=0.081 Sum_probs=75.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcC--CC-----------------------------------EEEEecccCCc-ccHHHHH
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ--PL-----------------------------------WVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~--~v-----------------------------------~v~~V~p~d~s-~~l~~a~ 207 (309)
....|||.+||+|+|+..++.. +. .-..|.++|.+ .+++.|.
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 3468999999999997665432 10 00235667776 5777766
Q ss_pred hc----Ccch---h-hhhccccCCCCCCCcceeEeccccc-cccccCCHHHHHHHHhhcccC--CeEEEEEeCHHHHHHH
Q 021643 208 DR----GLIG---M-YHDWCESFNTYPRTYDLLHSSFLLS-DVTQRCDIADVAVEMDRILRP--GGYVLVQDTLEMINKL 276 (309)
Q Consensus 208 eR----glig---~-~~d~ce~~lpfP~sFDlVh~~~v~~-~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~~~~~i 276 (309)
+. |+.. . ..|. ..++.+.+||+|+++-=+. .+.+..++..+..++.++||+ ||.+++......+.+
T Consensus 275 ~Na~~~gl~~~i~~~~~D~--~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~~- 351 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVGDA--TQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYEDFEY- 351 (385)
T ss_dssp HHHHHHTCGGGEEEEECCG--GGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTTHHH-
T ss_pred HHHHHcCCCCceEEEECCh--hhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHHHHH-
Confidence 54 4421 1 1222 1244558999999974332 122223467788889999988 777666554432222
Q ss_pred HHHHHcCCCeee--eecceEEEEEeCcCCCC
Q 021643 277 KPVLHSLQWSTN--IYHDQFLVGKKGFWRPT 305 (309)
Q Consensus 277 ~~l~~~l~W~~~--~~~e~~li~~K~~w~~~ 305 (309)
. -+++.+.. +..+.+=+--.+|+-+.
T Consensus 352 -~--~g~~~~~~~~l~nG~l~~~~~~~~~~~ 379 (385)
T 3ldu_A 352 -E--FGQKADKKRKLYNGMLKTNFFQYPGPK 379 (385)
T ss_dssp -H--HTSCCSEEEEEEETTEEEEEEEECCCC
T ss_pred -h--hCCCcccceEEecCCEEEEEEEEECCC
Confidence 1 13333322 33555544444566443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00022 Score=66.75 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=45.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC-----cchhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ ++++.+.++- +.-...|. ...+++ .+||.|+++.-+
T Consensus 51 ~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~--l~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKELYNNIEIIWGDA--LKVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHHCSSEEEEESCT--TTSCGGGSCCSEEEEECCG
T ss_pred cCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhccCCCeEEEECch--hhCCcccCCccEEEEeCcc
Confidence 45899999999999999998753 35556665 5777766542 21122232 135677 789999988444
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00044 Score=66.86 Aligned_cols=136 Identities=11% Similarity=0.073 Sum_probs=76.9
Q ss_pred CCCeEEEeCCcchHHHHHhhc--CCC-----------------------------------EEEEecccCCc-ccHHHHH
Q 021643 166 SVRNVMDMNASYGGFAAALID--QPL-----------------------------------WVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~--~~v-----------------------------------~v~~V~p~d~s-~~l~~a~ 207 (309)
....+||.+||+|+|+...+. .+. .-..|.++|.+ .+++.|.
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 346899999999999755442 210 00135666776 5777665
Q ss_pred hc----Ccch---h-hhhccccCCCCCCCcceeEeccccc-cccccCCHHHHHHHHhhcccC--CeEEEEEeCHHHHHHH
Q 021643 208 DR----GLIG---M-YHDWCESFNTYPRTYDLLHSSFLLS-DVTQRCDIADVAVEMDRILRP--GGYVLVQDTLEMINKL 276 (309)
Q Consensus 208 eR----glig---~-~~d~ce~~lpfP~sFDlVh~~~v~~-~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~~~~~i 276 (309)
+. |+.. . ..|.. .++.+.+||+|+++==+. .+.+..++..+..++.++||+ ||.+++......+.
T Consensus 274 ~Na~~~gl~~~I~~~~~D~~--~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~-- 349 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQMRLQ--DFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTDFE-- 349 (384)
T ss_dssp HHHHHTTCTTTEEEEECCGG--GCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTTHH--
T ss_pred HHHHHcCCCCceEEEECChH--HCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHHHH--
Confidence 43 4421 1 12321 245568999999982221 122223467788888888887 88766655433222
Q ss_pred HHHHHcCCCeeeeecceEEEEEeCcCCCC
Q 021643 277 KPVLHSLQWSTNIYHDQFLVGKKGFWRPT 305 (309)
Q Consensus 277 ~~l~~~l~W~~~~~~e~~li~~K~~w~~~ 305 (309)
+.+..+-..+..+..+.+=+--.+|+-+.
T Consensus 350 ~~~g~~~~~~~~l~nG~l~~~~~~~~~~~ 378 (384)
T 3ldg_A 350 QKFGRKADKKRKLYNGSLKVDLYQFYGQR 378 (384)
T ss_dssp HHHTSCCSEEEEEEETTEEEEEEEECCCC
T ss_pred HHhCCCccceeEEecCCEEEEEEEEECCC
Confidence 12222222333444666666666677554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.34 E-value=8.4e-05 Score=70.81 Aligned_cols=101 Identities=12% Similarity=0.218 Sum_probs=58.5
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCc--chhh-hhccccCCC-CC------------
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGL--IGMY-HDWCESFNT-YP------------ 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgl--ig~~-~d~ce~~lp-fP------------ 226 (309)
.+|||+|||+|.|+..|+.... .|.++|.+ .+++.|.+ .|+ +..+ .| .+..++ ++
T Consensus 215 ~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d-~~~~~~~~~~~~~~~~l~~~~ 290 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA-AEEFTQAMNGVREFNRLQGID 290 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCC-SHHHHHHHSSCCCCTTGGGSC
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEECC-HHHHHHHHhhccccccccccc
Confidence 5799999999999999988543 45666776 46665543 343 1111 11 111111 11
Q ss_pred ---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHH-HHHHHHHHH
Q 021643 227 ---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEM-INKLKPVLH 281 (309)
Q Consensus 227 ---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~-~~~i~~l~~ 281 (309)
.+||+|+.+ +++.+ +..++.+.|+|+|.+++... ... ...++.+..
T Consensus 291 ~~~~~fD~Vv~d------PPr~g---~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~~ 341 (369)
T 3bt7_A 291 LKSYQCETIFVD------PPRSG---LDSETEKMVQAYPRILYISCNPETLCKNLETLSQ 341 (369)
T ss_dssp GGGCCEEEEEEC------CCTTC---CCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEC------cCccc---cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhh
Confidence 279999764 12222 35677788888888777653 332 334444543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.32 E-value=3.5e-05 Score=72.13 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=61.7
Q ss_pred CCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHh---cCc-chhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFD---RGL-IGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~e---Rgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|+|+.+.+. .++ .++.++|.. ++...+.. .|. +..+.+-++ ...++ +.||+|.|.....
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv--~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~d-v~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNV--KKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTD-VFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-GGGSCCCCCSEEEECCCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCC--CeeeeEEeccCccccccccccCCCceEEeeCCcc-hhhcCCCCcCEEEecCccC
Confidence 35899999999999998775 443 344455443 21000000 011 001111011 23466 8999999987665
Q ss_pred cccc----cCCHHHHHHHHhhcccCC--eEEEEEeCH-------HHHHHHHHHHHcC
Q 021643 240 DVTQ----RCDIADVAVEMDRILRPG--GYVLVQDTL-------EMINKLKPVLHSL 283 (309)
Q Consensus 240 ~~~~----~~~~~~~L~Em~RVLRPG--G~lii~D~~-------~~~~~i~~l~~~l 283 (309)
-.. ......+|.=+.++|||| |.|++--.. +.+..++..-+..
T Consensus 168 -sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~~lk~~F~~V 223 (282)
T 3gcz_A 168 -SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELSRLQLKHGGG 223 (282)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHHHHHHHHCCE
T ss_pred -CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHHHHHHhcCCE
Confidence 111 011113455557899999 999996433 3455555554433
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00021 Score=69.15 Aligned_cols=104 Identities=14% Similarity=0.073 Sum_probs=61.5
Q ss_pred CCCeEEEeCCcchHHHHHhhc--CCC-----------------------------------EEEEecccCCc-ccHHHHH
Q 021643 166 SVRNVMDMNASYGGFAAALID--QPL-----------------------------------WVMNVVPIDAP-DTLSIIF 207 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~--~~v-----------------------------------~v~~V~p~d~s-~~l~~a~ 207 (309)
....|||.+||+|+|+...+. .+. .-..|.++|.+ .+++.|.
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 346899999999999754442 210 00135667776 5777766
Q ss_pred hc----Ccch----hhhhccccCCCCCCCcceeEeccccc-cccccCCHHHHHHHHhhcccC--CeEEEEEeCHH
Q 021643 208 DR----GLIG----MYHDWCESFNTYPRTYDLLHSSFLLS-DVTQRCDIADVAVEMDRILRP--GGYVLVQDTLE 271 (309)
Q Consensus 208 eR----glig----~~~d~ce~~lpfP~sFDlVh~~~v~~-~~~~~~~~~~~L~Em~RVLRP--GG~lii~D~~~ 271 (309)
+. |+.. ...|.. .++.+.+||+|+++-=+. .+.+..++..+..++.++||+ ||.+++.....
T Consensus 281 ~Na~~~gl~~~I~~~~~D~~--~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQLQVA--DFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHTTCTTCSEEEECCGG--GCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHcCCCCceEEEECChH--hCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 53 4421 112321 355568999999982221 122223456677888888887 88766655443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00032 Score=65.81 Aligned_cols=111 Identities=12% Similarity=0.067 Sum_probs=60.5
Q ss_pred CCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCC-CC--CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNT-YP--RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lp-fP--~sFDlVh 233 (309)
..+|||+|||+|+.+..|+.. +- ..|+++|.+ .+++.+.++ |+ +. ...|..+ ..+ .+ .+||.|+
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~--g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~-~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQ--GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA-VSPSDPRYHEVHYIL 179 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG-SCTTCGGGTTEEEEE
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh-cCccccccCCCCEEE
Confidence 358999999999999888862 21 135566666 455555443 54 11 1223211 222 12 5799999
Q ss_pred ec------cccccccc--------cCCH-------HHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHH
Q 021643 234 SS------FLLSDVTQ--------RCDI-------ADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 234 ~~------~v~~~~~~--------~~~~-------~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~ 281 (309)
+. .++..-++ ..++ .++|....+.|+ ||+++.+.. .+.-+.|+.+++
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~ 251 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQ 251 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHT
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHH
Confidence 63 23322111 1122 246778888887 999998743 233344555554
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00026 Score=66.75 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccH--HHH-HhcCc-chhhhhccccCCCCC-CCcceeEecccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTL--SII-FDRGL-IGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l--~~a-~eRgl-ig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
+..+|||+||++|+|+..++++ ++ ..|.++|.. ++. +.. ...+. +.....-++ ...++ ..||+|.|....
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~gv--~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~d-i~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQKEV--MSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSN-VFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTSTTE--EEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCC-TTTSCCCCCSEEEECCCC
T ss_pred CCCEEEEcCCCCCHHHHHHHHhcCC--ceeeeEEeccccccccccccccCCceEEeecCce-eeecCCCCcCEEeecCcC
Confidence 3578999999999999999975 43 344444443 110 000 00010 000111111 23456 899999997555
Q ss_pred cccccc--CC--HHHHHHHHhhcccCC-eEEEEEeCH-------HHHHHHHHHHHcCC
Q 021643 239 SDVTQR--CD--IADVAVEMDRILRPG-GYVLVQDTL-------EMINKLKPVLHSLQ 284 (309)
Q Consensus 239 ~~~~~~--~~--~~~~L~Em~RVLRPG-G~lii~D~~-------~~~~~i~~l~~~l~ 284 (309)
. -... +. ...+|.=+.++|||| |.|++--.. +.+..++..-++.+
T Consensus 158 n-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll~~lk~~F~~V~ 214 (300)
T 3eld_A 158 S-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKLERLQLRFGGGI 214 (300)
T ss_dssp C-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHHHHHHHHHCCEE
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHHHHHHHhCCcEE
Confidence 4 1110 00 123344447899999 999997433 44555555554433
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0004 Score=64.12 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=43.1
Q ss_pred eEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---ch-hhhhccccCCCCC--CCcceeEecc
Q 021643 169 NVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IG-MYHDWCESFNTYP--RTYDLLHSSF 236 (309)
Q Consensus 169 ~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---ig-~~~d~ce~~lpfP--~sFDlVh~~~ 236 (309)
+|||+|||+|.++..|++.+. .|+++|.+ ++++.+.++-- +. ...|.. ..+++ ..||.|+++-
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l--~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDAL--LYPWEEVPQGSLLVANL 118 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCGG--GSCGGGSCTTEEEEEEE
T ss_pred eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECChh--hCChhhccCccEEEecC
Confidence 899999999999999999763 45566666 58888776532 11 122321 24555 3789988874
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00025 Score=71.38 Aligned_cols=106 Identities=11% Similarity=-0.011 Sum_probs=60.6
Q ss_pred CCeEEEeCCcchHHHHHhhcC----CC-------------EEEEecccCCc-ccHHHHHhc----Ccchh----hhhccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ----PL-------------WVMNVVPIDAP-DTLSIIFDR----GLIGM----YHDWCE 220 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~----~v-------------~v~~V~p~d~s-~~l~~a~eR----glig~----~~d~ce 220 (309)
..+|||.+||+|+|...+.+. .. ...++.++|.. .++.+|... |+... ..-.+.
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 458999999999998766532 10 00124455554 366665532 33210 000111
Q ss_pred cCC---CCC-CCcceeEeccccccccc-----------cCCHHHHHHHHhhcccCCeEEEEEeCHHH
Q 021643 221 SFN---TYP-RTYDLLHSSFLLSDVTQ-----------RCDIADVAVEMDRILRPGGYVLVQDTLEM 272 (309)
Q Consensus 221 ~~l---pfP-~sFDlVh~~~v~~~~~~-----------~~~~~~~L~Em~RVLRPGG~lii~D~~~~ 272 (309)
..+ +++ ..||+|+++==|..... ...-..++..+.+.|||||++.+.-+..+
T Consensus 250 DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~ 316 (541)
T 2ar0_A 250 NTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV 316 (541)
T ss_dssp CTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred CCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcc
Confidence 122 234 78999999854432211 01123589999999999999888765543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00013 Score=66.74 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=39.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc--------ccHHHHHhc----Cc---chhhhhccccCCC-CC---CC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--------DTLSIIFDR----GL---IGMYHDWCESFNT-YP---RT 228 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--------~~l~~a~eR----gl---ig~~~d~ce~~lp-fP---~s 228 (309)
.+|||+|||+|.++..|+..+..| +.+|.+ ++++.+.++ |+ +..++.-.+..++ ++ ++
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V---~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTV---TAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCE---EEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CeEEEeeCccCHHHHHHHHhCCEE---EEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 589999999999999999876433 333332 244444332 11 1111111112233 44 68
Q ss_pred cceeEecccccc
Q 021643 229 YDLLHSSFLLSD 240 (309)
Q Consensus 229 FDlVh~~~v~~~ 240 (309)
||+|+++-.|.+
T Consensus 162 fD~V~~dP~~~~ 173 (258)
T 2r6z_A 162 PDIVYLDPMYPE 173 (258)
T ss_dssp CSEEEECCCC--
T ss_pred ccEEEECCCCCC
Confidence 999999877765
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.002 Score=59.99 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---HHHHHHHHHHHHcCCCeeeee--cceEEEE
Q 021643 224 TYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTNIY--HDQFLVG 297 (309)
Q Consensus 224 pfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~~~--~e~~li~ 297 (309)
.++ .+||+||...-. +. ....+|..+.+.|+|||++++.|- ......+.++.+...++..+. +...++|
T Consensus 204 ~~~~~~~d~vfIDaD~--y~---~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~~~i~~~~~~~v~~ 278 (282)
T 2wk1_A 204 TAPIDTLAVLRMDGDL--YE---STWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIADELITIDRDGVYW 278 (282)
T ss_dssp TCCCCCEEEEEECCCS--HH---HHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCCSCCEECSSSCEEE
T ss_pred hCCCCCEEEEEEcCCc--cc---cHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCceEEEEecCEEEEE
Confidence 366 899999987422 11 134678999999999999998874 445667777777777776554 6677888
Q ss_pred EeC
Q 021643 298 KKG 300 (309)
Q Consensus 298 ~K~ 300 (309)
+|.
T Consensus 279 rk~ 281 (282)
T 2wk1_A 279 QRT 281 (282)
T ss_dssp ECC
T ss_pred EeC
Confidence 885
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=60.24 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=40.8
Q ss_pred CcceeEeccccccccccC-CHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee-----cceEEEEEeC
Q 021643 228 TYDLLHSSFLLSDVTQRC-DIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-----HDQFLVGKKG 300 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~-~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-----~e~~li~~K~ 300 (309)
.||+|+... |+.-.+.. =-+++|.+|.|.|||||.++.-.... .+++-+..-..++... +..++.+.|.
T Consensus 173 ~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysaa~---~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 173 KVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAG---FVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp CEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCCBH---HHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred eEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEEEeCCH---HHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 799998753 43211111 02569999999999999998633322 2333333334444322 4567777764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00034 Score=68.56 Aligned_cols=115 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc------Cc--chhh-hhccccCCCC-C-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR------GL--IGMY-HDWCESFNTY-P-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR------gl--ig~~-~d~ce~~lpf-P-~sFDlVh~~ 235 (309)
.+|||+|||+|.++.+|+..+. .|+.+|.+ .+++.+.++ |+ +..+ .|. ...++. + ++||+|+++
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da-~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDF-KEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCG-GGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcH-HHhhhhccCCCceEEEEC
Confidence 6899999999999999998764 46667776 577766554 44 2112 221 112232 4 689999985
Q ss_pred cccc-------cccccCCHHHHHHHHhhcccC-CeEEEEEeCHHHHHHHHHHHHcCCCeeeee
Q 021643 236 FLLS-------DVTQRCDIADVAVEMDRILRP-GGYVLVQDTLEMINKLKPVLHSLQWSTNIY 290 (309)
Q Consensus 236 ~v~~-------~~~~~~~~~~~L~Em~RVLRP-GG~lii~D~~~~~~~i~~l~~~l~W~~~~~ 290 (309)
=-.. +....+.+ -+.++.+.|+. +..+++.-.+- -.++...+.+.|...++
T Consensus 171 PPrr~~~~grv~~led~~P--~l~~~~~~l~~~~~~~~vK~sP~--ld~~~~~~~l~~~~ev~ 229 (410)
T 3ll7_A 171 PARRSGADKRVYAIADCEP--DLIPLATELLPFCSSILAKLSPM--IDLWDTLQSLLHVQELH 229 (410)
T ss_dssp CEEC-----CCCCGGGEES--CHHHHHHHHGGGSSEEEEEECTT--SCHHHHHHHCSSEEEEE
T ss_pred CCCcCCCCceEEehhhcCC--CHHHHHHHHHhhCCcEEEEcCCC--CChHHHHhhCCCCcEEE
Confidence 1111 11122222 46677776554 44555543322 12233334555665554
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.011 Score=57.37 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=51.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
..+|||+||.+|||+..|.+++..| +++|...+-+...+.+ +.-...|.. ....+ +.||+|+|..+..
T Consensus 212 G~~vlDLGAaPGGWT~~l~~rg~~V---~aVD~~~l~~~l~~~~~V~~~~~d~~--~~~~~~~~~D~vvsDm~~~----- 281 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKRNMWV---YSVDNGPMAQSLMDTGQVTWLREDGF--KFRPTRSNISWMVCDMVEK----- 281 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCEE---EEECSSCCCHHHHTTTCEEEECSCTT--TCCCCSSCEEEEEECCSSC-----
T ss_pred CCEEEEeCcCCCHHHHHHHHCCCEE---EEEEhhhcChhhccCCCeEEEeCccc--cccCCCCCcCEEEEcCCCC-----
Confidence 3689999999999999999998654 4445443333333333 221222211 22334 7899999986553
Q ss_pred CCHHHHHHHHhhcccCC
Q 021643 245 CDIADVAVEMDRILRPG 261 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPG 261 (309)
+..++.-+.+.|..|
T Consensus 282 --p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 282 --PAKVAALMAQWLVNG 296 (375)
T ss_dssp --HHHHHHHHHHHHHTT
T ss_pred --hHHhHHHHHHHHhcc
Confidence 445666666766665
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00046 Score=63.38 Aligned_cols=113 Identities=13% Similarity=0.080 Sum_probs=58.6
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc--------cHHHHHhc----C-c---chhhhhccccCC
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD--------TLSIIFDR----G-L---IGMYHDWCESFN 223 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~--------~l~~a~eR----g-l---ig~~~d~ce~~l 223 (309)
+++..+...+|||++||+|.++..|+.++.. |+.+|.+. .++.+.+. | + +..++.-.+..+
T Consensus 82 l~l~~g~~~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L 158 (258)
T 2oyr_A 82 VGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL 158 (258)
T ss_dssp TTCBTTBCCCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS
T ss_pred hcccCCCCCEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH
Confidence 3444432258999999999999999887643 33444432 12222211 1 1 111111112235
Q ss_pred CC-CCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHH
Q 021643 224 TY-PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVL 280 (309)
Q Consensus 224 pf-P~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~ 280 (309)
+. +.+||+|+++-.|.+-. . ..++.+.-|+||+.|-- -.|..+.++...+++
T Consensus 159 ~~~~~~fDvV~lDP~y~~~~-~---saavkk~~~~lr~l~~~-~~~~~~ll~~a~~~a 211 (258)
T 2oyr_A 159 TDITPRPQVVYLDPMFPHKQ-K---SALVKKEMRVFQSLVGP-DLDADGLLEPARLLA 211 (258)
T ss_dssp TTCSSCCSEEEECCCCCCCC-C--------HHHHHHHHHSCC-CTTGGGGHHHHHHHC
T ss_pred HhCcccCCEEEEcCCCCCcc-c---chHHHHHHHHHHHhhcC-CccHHHHHHHHHHhc
Confidence 53 46799999987775422 1 24677777888886521 112233455555555
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0021 Score=64.78 Aligned_cols=102 Identities=16% Similarity=0.014 Sum_probs=60.1
Q ss_pred CeEEEeCCcchHHHHHhhcC--------C------CEEEEecccCCc-ccHHHHHh----cCcchh----hhhccccCCC
Q 021643 168 RNVMDMNASYGGFAAALIDQ--------P------LWVMNVVPIDAP-DTLSIIFD----RGLIGM----YHDWCESFNT 224 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~--------~------v~v~~V~p~d~s-~~l~~a~e----Rglig~----~~d~ce~~lp 224 (309)
.+|||.+||+|+|.....+. . ....++.+.+.. .++.+|.. +|+... ..|.- ....
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL-~~~~ 324 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSF-LDDQ 324 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTT-TSCS
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchh-cCcc
Confidence 38999999999997765421 0 001367777776 46666553 343211 12211 1223
Q ss_pred CC-CCcceeEecccccc--c-----------------------cccC-CHHHHHHHHhhcccCCeEEEEEeCH
Q 021643 225 YP-RTYDLLHSSFLLSD--V-----------------------TQRC-DIADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~--~-----------------------~~~~-~~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
++ ..||+|+++==|.. + +... .--.+++.+.+.|||||++.+.-+.
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~ 397 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN 397 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence 55 89999999722221 1 1111 1125899999999999997776443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.002 Score=66.83 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=42.3
Q ss_pred EecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEec--cccccccccCCHHHH---HHHHhhc
Q 021643 193 NVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHSS--FLLSDVTQRCDIADV---AVEMDRI 257 (309)
Q Consensus 193 ~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~~--~v~~~~~~~~~~~~~---L~Em~RV 257 (309)
.|.++|.. .+++.|.+. |+.. ...|..+...|++ ++||+|+++ +-.. +.+..++..+ |.++.|.
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R-lg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER-LDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc-ccchhHHHHHHHHHHHHHHh
Confidence 45666776 566666543 5422 1123222122555 499999998 3221 1111233444 4455555
Q ss_pred ccCCeEEEEEeCHHHHH
Q 021643 258 LRPGGYVLVQDTLEMIN 274 (309)
Q Consensus 258 LRPGG~lii~D~~~~~~ 274 (309)
+.|||.+++-.....+.
T Consensus 337 ~~~g~~~~ilt~~~~l~ 353 (703)
T 3v97_A 337 QFGGWNLSLFSASPDLL 353 (703)
T ss_dssp HCTTCEEEEEESCHHHH
T ss_pred hCCCCeEEEEeCCHHHH
Confidence 56899888876655433
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=68.95 Aligned_cols=127 Identities=11% Similarity=0.054 Sum_probs=66.4
Q ss_pred chhhhcccchhHHHHHHH--HHHhccCCCCCCCCeEEEeCCcchHHHH----Hh--hc------CCCEEEEecccCCcc-
Q 021643 137 SEEAFNKDTTHWYALVSD--VYVGGLAINWSSVRNVMDMNASYGGFAA----AL--ID------QPLWVMNVVPIDAPD- 201 (309)
Q Consensus 137 ~~e~F~~d~~~W~~~v~~--~y~~~l~i~~~~~r~VLD~GCG~G~faa----~L--~~------~~v~v~~V~p~d~s~- 201 (309)
+-|.|++|.-+-...-.. ..+..+.-..++...|||+|||+|-+.. +. ++ .......|.+++.+.
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~ 457 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPN 457 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHH
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChH
Confidence 557888887766543322 0111110011223579999999998742 11 11 000112344444431
Q ss_pred ---cHHHHHhcCc---chhhhhccccCCCC------CCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 202 ---TLSIIFDRGL---IGMYHDWCESFNTY------PRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 202 ---~l~~a~eRgl---ig~~~d~ce~~lpf------P~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
+++.....|+ +.+++.-.+ .... |...|+|++-..=+ +-+.+-....|.-++|.|||||.++
T Consensus 458 A~~~l~~~~~Ng~~d~VtVI~gd~e-ev~lp~~~~~~ekVDIIVSElmGs-fl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 458 AIVTLKYMNVRTWKRRVTIIESDMR-SLPGIAKDRGFEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHHHHHHHTTTTCSEEEESCGG-GHHHHHHHTTCCCCSEEEECCCBT-TBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCchh-hcccccccCCCCcccEEEEecccc-ccchhccHHHHHHHHHhCCCCcEEE
Confidence 3343334454 222222122 1223 68899999864422 2233445678888899999999854
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0054 Score=55.48 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|++++. ..++++|.+ .+++.+.++
T Consensus 32 ~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 32 GNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI 73 (249)
T ss_dssp TCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS
T ss_pred cCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc
Confidence 45899999999999999998851 246777877 688888776
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0019 Score=68.38 Aligned_cols=107 Identities=9% Similarity=-0.046 Sum_probs=62.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCC--CEEEEecccCCc-ccHHHHHh----------cCcc--hhhhhccccCCCCC-CCcc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP--LWVMNVVPIDAP-DTLSIIFD----------RGLI--GMYHDWCESFNTYP-RTYD 230 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~--v~v~~V~p~d~s-~~l~~a~e----------Rgli--g~~~d~ce~~lpfP-~sFD 230 (309)
..+|||.|||+|+|+.+++.+- ..-..+.+.|.. .++..|.. +|.. ...++......+.+ +.||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 4689999999999998887642 100134556665 46666622 1211 11111111112345 8899
Q ss_pred eeEecccccc---cc----------------------ccCC-HHHHHHHHhhcccCCeEEEEEeCHHHH
Q 021643 231 LLHSSFLLSD---VT----------------------QRCD-IADVAVEMDRILRPGGYVLVQDTLEMI 273 (309)
Q Consensus 231 lVh~~~v~~~---~~----------------------~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~ 273 (309)
+|+++==+.. .. ...+ ...++..+.+.|||||++.+--+..++
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L 470 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL 470 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence 9999722210 00 0001 335788899999999998887665554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0027 Score=57.87 Aligned_cols=40 Identities=10% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|++++. .|+++|.+ ++++.+.++
T Consensus 30 ~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~ 70 (255)
T 3tqs_A 30 TDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKK 70 (255)
T ss_dssp TCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHH
T ss_pred cCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHH
Confidence 46899999999999999999863 46667776 577777665
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=54.43 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=60.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhc------Cc-----c-hhhhhccccCCCCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDR------GL-----I-GMYHDWCESFNTYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eR------gl-----i-g~~~d~ce~~lpfP-~sFD 230 (309)
...++||=+|-|.|+.++.+.+. ++.-+.++-+|. ..++.+++- |. + -.+.|- -.++--. ++||
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~-~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg-~~~l~~~~~~yD 159 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDA-GVVSFCRQYLPNHNAGSYDDPRFKLVIDDG-VNFVNQTSQTFD 159 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCH-HHHHHHHHHCHHHHTTGGGCTTEEEEESCT-TTTTSCSSCCEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCH-HHHHHHHhcCccccccccCCCcEEEEechH-HHHHhhccccCC
Confidence 45689999999999999999885 443334444443 244444332 11 0 012221 1234445 8999
Q ss_pred eeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEE
Q 021643 231 LLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+.... ........ -..++..+.|+|+|||.++..
T Consensus 160 vIi~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 160 VIISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp EEEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 9987632 11111010 135899999999999999985
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.019 Score=50.98 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=25.2
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|+...-.. ...+.+..+.|||||.+++.+
T Consensus 121 ~~fDlIfIDg~k~--------~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 121 RHPDVVLVDGRFR--------VGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp CCCSEEEECSSSH--------HHHHHHHHHHCSSCEEEEETT
T ss_pred CCCCEEEEeCCCc--------hhHHHHHHHhcCCCeEEEEeC
Confidence 7899998765322 345666779999999996654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.014 Score=49.86 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=58.2
Q ss_pred ccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcch-HHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhhhcc
Q 021643 143 KDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYG-GFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWC 219 (309)
Q Consensus 143 ~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G-~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~c 219 (309)
...++|...+. |+..- +. ...+|||+|||.| .-|.+|++ .++ +|+.+|.+ ..++ .+..|
T Consensus 17 ~~~~m~e~Lae--YI~~~-~~--~~~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~--------~v~dD-- 78 (153)
T 2k4m_A 17 RGSHMWNDLAV--YIIRC-SG--PGTRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG--------IVRDD-- 78 (153)
T ss_dssp CCCHHHHHHHH--HHHHH-SC--SSSEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT--------EECCC--
T ss_pred chhhHHHHHHH--HHHhc-CC--CCCcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc--------eEEcc--
Confidence 34455666553 66431 11 1248999999999 79999997 774 45556654 3333 11222
Q ss_pred ccCCCCC---CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 220 ESFNTYP---RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 220 e~~lpfP---~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
-+.|.. +.||+|.+-+ ...++...+.++.+-. |.-++|+
T Consensus 79 -iF~P~~~~Y~~~DLIYsir------PP~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 79 -ITSPRMEIYRGAALIYSIR------PPAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp -SSSCCHHHHTTEEEEEEES------CCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred -CCCCcccccCCcCEEEEcC------CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 244555 4899997632 2235666777776643 4555555
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0041 Score=57.47 Aligned_cols=43 Identities=9% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCE-EEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLW-VMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~-v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|.++..|++.... -..|+++|.+ ++++.+.++
T Consensus 43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~ 87 (279)
T 3uzu_A 43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR 87 (279)
T ss_dssp TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence 458999999999999999875321 0014556666 588888776
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.022 Score=54.67 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=58.7
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-cc---HHHHHhc-Ccc---------hhhhhccccCCCCC-CCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DT---LSIIFDR-GLI---------GMYHDWCESFNTYP-RTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~---l~~a~eR-gli---------g~~~d~ce~~lpfP-~sFD 230 (309)
...+||||+||.||=+.+|++..-. ..|+++|.+ .- +....+| |.. -...|. .....+. ++||
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~-~~~~~~~~~~fD 225 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG-RKWGELEGDTYD 225 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG-GGHHHHSTTCEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch-hhcchhccccCC
Confidence 3468999999999998888875432 357788886 32 3222232 221 011121 1111233 8999
Q ss_pred eeEe----cc----ccccccc------cC---CH----HHHHHHHhhcccCCeEEEEEe
Q 021643 231 LLHS----SF----LLSDVTQ------RC---DI----ADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 231 lVh~----~~----v~~~~~~------~~---~~----~~~L~Em~RVLRPGG~lii~D 268 (309)
.|.+ +. ++..-++ .. .+ .++|....+.|||||+++.+.
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsT 284 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYST 284 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 9985 32 2211000 00 11 257788889999999999985
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0055 Score=56.87 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=51.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEE--EEecccCCc--ccHHHHHhcCc--chhh-h-hccccCCCCC-CCcceeEecc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWV--MNVVPIDAP--DTLSIIFDRGL--IGMY-H-DWCESFNTYP-RTYDLLHSSF 236 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v--~~V~p~d~s--~~l~~a~eRgl--ig~~-~-d~ce~~lpfP-~sFDlVh~~~ 236 (309)
..+|+|+||+.|+|+.+.+++ ++-. --+.+.|.+ ++...- .|. +... . |..+ .+ ..||+|.|..
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~--~Gv~~i~~~~G~Df~~----~~~~~~DvVLSDM 147 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS--YGWNIVTMKSGVDVFY----KPSEISDTLLCDI 147 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS--TTGGGEEEECSCCGGG----SCCCCCSEEEECC
T ss_pred CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC--CCceEEEeeccCCccC----CCCCCCCEEEeCC
Confidence 468999999999999999886 2311 124555632 111000 121 1101 1 4322 33 7899999974
Q ss_pred cccc-cc--ccCCHHHHHHHHhhcccCCe-EEEEE
Q 021643 237 LLSD-VT--QRCDIADVAVEMDRILRPGG-YVLVQ 267 (309)
Q Consensus 237 v~~~-~~--~~~~~~~~L~Em~RVLRPGG-~lii~ 267 (309)
.=.. .. +......+|.=+.++|+||| -|++-
T Consensus 148 APnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 148 GESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 3321 00 00001124433448999999 88885
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0058 Score=57.12 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=32.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
..+|||+|||+|+++.+|+++.. ...|+++|.+ .+++.+.++
T Consensus 27 g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~ 69 (301)
T 1m6y_A 27 EKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEK 69 (301)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence 35899999999999999987521 1246777887 688888775
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.029 Score=56.60 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=65.6
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHh----cCcc----hh-hhhccccCCC-CC-CCcc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFD----RGLI----GM-YHDWCESFNT-YP-RTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~e----Rgli----g~-~~d~ce~~lp-fP-~sFD 230 (309)
...+|+|-+||+|+|...+.++ .. ..++.+.+.. .+..+|.- +|+. .. ..|.-+...| ++ ..||
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~-~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQ-TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhcc-CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 4568999999999987666542 10 1245555555 35555543 3431 11 1121111112 45 8899
Q ss_pred eeEeccccc-cc------------------cccCC-HHHHHHHHhhccc-CCeEEEEEeCHHHH------HHHHHHH-Hc
Q 021643 231 LLHSSFLLS-DV------------------TQRCD-IADVAVEMDRILR-PGGYVLVQDTLEMI------NKLKPVL-HS 282 (309)
Q Consensus 231 lVh~~~v~~-~~------------------~~~~~-~~~~L~Em~RVLR-PGG~lii~D~~~~~------~~i~~l~-~~ 282 (309)
+|+++==|. .+ +.... --.+++.+.+.|| |||++.+.-+..++ .++++.+ +.
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~ 379 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEE 379 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHT
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhC
Confidence 999871111 01 10011 1248999999999 99998776554433 4455544 44
Q ss_pred CCCe
Q 021643 283 LQWS 286 (309)
Q Consensus 283 l~W~ 286 (309)
-.-+
T Consensus 380 ~~l~ 383 (542)
T 3lkd_A 380 GAID 383 (542)
T ss_dssp TCEE
T ss_pred Ccee
Confidence 3333
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.015 Score=52.73 Aligned_cols=41 Identities=5% Similarity=0.110 Sum_probs=29.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG 210 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg 210 (309)
..+|||+|||+|.++. |... .. ..|.++|.+ .+++.+.++.
T Consensus 22 ~~~VLEIG~G~G~lt~-l~~~-~~-~~v~avEid~~~~~~a~~~~ 63 (252)
T 1qyr_A 22 GQAMVEIGPGLAALTE-PVGE-RL-DQLTVIELDRDLAARLQTHP 63 (252)
T ss_dssp TCCEEEECCTTTTTHH-HHHT-TC-SCEEEECCCHHHHHHHHTCT
T ss_pred cCEEEEECCCCcHHHH-hhhC-CC-CeEEEEECCHHHHHHHHHHh
Confidence 3579999999999999 7542 21 015667776 6888887763
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.11 Score=50.36 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=63.2
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcCc--ch-------------hhhhccccCCC-C--C-
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRGL--IG-------------MYHDWCESFNT-Y--P- 226 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRgl--ig-------------~~~d~ce~~lp-f--P- 226 (309)
+.++||=+|-|.|+.++.+.+.+...+.++-+|. ..++++++--. .+ ...|- -.++- + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp-~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da-~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQ-MVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDC-IPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCH-HHHHHHHHHCCC----CCSSSEETTEEEEESCH-HHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCH-HHHHHHHhhchhhhhhhhccccccceeeehHHH-HHHHHhhhhcc
Confidence 4689999999999999999987653333333332 34555544210 00 01110 00110 1 1
Q ss_pred CCcceeEecccccccc-ccCC------HHHHHHHHhhcccCCeEEEEEe----CHHHHHHHHHHHHcC
Q 021643 227 RTYDLLHSSFLLSDVT-QRCD------IADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHSL 283 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~-~~~~------~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~l 283 (309)
+.||+|+....-.... .... -..++..+.|+|+|||.++..- ..+....+.+.++++
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v 350 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL 350 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh
Confidence 5799998763211000 0000 1457888999999999998742 123444555555554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.026 Score=66.09 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=16.8
Q ss_pred CCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 224 TYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 224 pfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+|. .+||+|+++.+++..+ ++...|..+.++|||||++++.+.
T Consensus 1306 ~~~~~~ydlvia~~vl~~t~---~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1306 PGSLGKADLLVCNCALATLG---DPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp C-----CCEEEEECC-----------------------CCEEEEEEC
T ss_pred cCCCCceeEEEEcccccccc---cHHHHHHHHHHhcCCCcEEEEEec
Confidence 455 8899999999996443 356789999999999999998764
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.18 Score=46.17 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcccCCeEEEEE
Q 021643 247 IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~ 267 (309)
+..++.|+.|+|||||.+++.
T Consensus 76 l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 76 LDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEE
Confidence 456889999999999998775
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.17 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.1
Q ss_pred HHHHHHHHhhcccCCeEEEEE
Q 021643 247 IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~ 267 (309)
+..+|.|+.|+|||||.+++.
T Consensus 63 l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 63 FLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHCcCCcEEEEE
Confidence 678999999999999998885
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.33 Score=45.94 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=57.4
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-c------cHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-D------TLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~------~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||+||++|+|..+.+.. ++ ..|.++|.- . +.+ -+.-.++-.... . ..--.+ ..+|+|.|.-.=
T Consensus 96 ~~VlDLGaapGGwsq~~~~~~gv--~~V~avdvG~~~he~P~~~~-ql~w~lV~~~~~-~-Dv~~l~~~~~D~ivcDige 170 (321)
T 3lkz_A 96 GKVIDLGCGRGGWCYYMATQKRV--QEVRGYTKGGPGHEEPQLVQ-SYGWNIVTMKSG-V-DVFYRPSECCDTLLCDIGE 170 (321)
T ss_dssp EEEEEETCTTCHHHHHHTTCTTE--EEEEEECCCSTTSCCCCCCC-BTTGGGEEEECS-C-CTTSSCCCCCSEEEECCCC
T ss_pred CEEEEeCCCCCcHHHHHHhhcCC--CEEEEEEcCCCCccCcchhh-hcCCcceEEEec-c-CHhhCCCCCCCEEEEECcc
Confidence 48999999999999976664 43 345555543 1 110 000011110100 0 011122 669999998663
Q ss_pred ccccccCC---HHHHHHHHhhcccCC-eEEEEEeC----HHHHHHHHHHHH
Q 021643 239 SDVTQRCD---IADVAVEMDRILRPG-GYVLVQDT----LEMINKLKPVLH 281 (309)
Q Consensus 239 ~~~~~~~~---~~~~L~Em~RVLRPG-G~lii~D~----~~~~~~i~~l~~ 281 (309)
+.-...-+ -.++|.=+-+.|++| |-|+|--. .++++.++.+=+
T Consensus 171 Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq~ 221 (321)
T 3lkz_A 171 SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQR 221 (321)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHHH
Confidence 32110001 112444446788999 88888642 456666666543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.18 Score=46.44 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=55.9
Q ss_pred CeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcc------cHHHHHhcCc-chhhh---hccccCCCCCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPD------TLSIIFDRGL-IGMYH---DWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~------~l~~a~eRgl-ig~~~---d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+|||+||++|+|+.+.+.. ++ ..|.++|.-. ++- ..-|- +..+. |. ....| ..+|.|.|.-
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g~--~~V~avdvG~~ghe~P~~~--~s~gwn~v~fk~gvDv-~~~~~--~~~DtllcDI 152 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKKV--TEVRGYTKGGPGHEEPVPM--STYGWNIVKLMSGKDV-FYLPP--EKCDTLLCDI 152 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTE--EEEEEECCCSTTSCCCCCC--CCTTTTSEEEECSCCG-GGCCC--CCCSEEEECC
T ss_pred CEEEEcCCCCCcHHHHHHHhcCC--CEEEEEecCCCCccCcchh--hhcCcCceEEEeccce-eecCC--ccccEEEEec
Confidence 48999999999999977664 43 2455555421 110 11121 00111 11 01222 6699999985
Q ss_pred ccccccccCC---HHHHHHHHhhcccCCeEEEEEe----CHHHHHHHHHHH
Q 021643 237 LLSDVTQRCD---IADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVL 280 (309)
Q Consensus 237 v~~~~~~~~~---~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~ 280 (309)
.=++-...-+ -.++|.=+.+.|++ |-|++-- ..++++.++.+=
T Consensus 153 geSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq 202 (267)
T 3p8z_A 153 GESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQ 202 (267)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHH
T ss_pred CCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHH
Confidence 5443211101 12244444678888 7777753 345666666553
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.38 Score=45.64 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=51.9
Q ss_pred HHHhc--cCCCCCCCCeEEEeCC------cchHHHHH-hhcCCCEEEE--ecccCCcccHHHHHhcCcchhhhhccccCC
Q 021643 155 VYVGG--LAINWSSVRNVMDMNA------SYGGFAAA-LIDQPLWVMN--VVPIDAPDTLSIIFDRGLIGMYHDWCESFN 223 (309)
Q Consensus 155 ~y~~~--l~i~~~~~r~VLD~GC------G~G~faa~-L~~~~v~v~~--V~p~d~s~~l~~a~eRglig~~~d~ce~~l 223 (309)
+|++. +.++. ..+|||+|| -.|++... +...+..+++ +.|..... +. ....| |. .
T Consensus 98 qyl~~~~~~vp~--gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda--------~~-~IqGD-~~--~ 163 (344)
T 3r24_A 98 QYLNTLTLAVPY--NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDA--------DS-TLIGD-CA--T 163 (344)
T ss_dssp HHHTTSCCCCCT--TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSS--------SE-EEESC-GG--G
T ss_pred HHhccccEeecC--CCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCC--------Ce-EEEcc-cc--c
Confidence 37753 34444 468999997 67886433 2233323333 33332211 11 12233 32 2
Q ss_pred CCC-CCcceeEecccccc--ccc-----cCCHHHHHHHH-hhcccCCeEEEEE
Q 021643 224 TYP-RTYDLLHSSFLLSD--VTQ-----RCDIADVAVEM-DRILRPGGYVLVQ 267 (309)
Q Consensus 224 pfP-~sFDlVh~~~v~~~--~~~-----~~~~~~~L~Em-~RVLRPGG~lii~ 267 (309)
.+. +.||+|++...=.- ..+ ...+.....|+ .++|+|||.|++-
T Consensus 164 ~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 164 VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp EEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 333 88999998632210 011 11245555555 4589999999996
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.12 Score=47.46 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=30.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
...|||.+||+|.++.+.+..+- .+.++|.+ .+++.|.+|
T Consensus 236 ~~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 236 GDVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER 276 (297)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 35899999999999999888764 34555665 577777766
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.12 E-value=0.33 Score=45.44 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.2
Q ss_pred HHHHHHHHhhcccCCeEEEEEe
Q 021643 247 IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D 268 (309)
+...|.|+.|+|+|||.+++.-
T Consensus 85 ~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 85 AKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEc
Confidence 5678999999999999998863
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=86.00 E-value=1.2 Score=39.81 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcccCCeEEEEEe
Q 021643 247 IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D 268 (309)
+..+|.|+.|+|+|||.+++.-
T Consensus 53 ~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 53 TYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEEc
Confidence 5678999999999999998883
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.60 E-value=2.5 Score=40.07 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=57.5
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc---ccHHHHH-hcCcchhhhhccccCCCCCCCcceeEeccccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP---DTLSIIF-DRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQ 243 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s---~~l~~a~-eRglig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~~ 243 (309)
.+||.+|.++|.++..|+..+++.+ .|.- ..++.-. ..|+...-..+....-+.|..||+|... +. ++
T Consensus 40 ~~~~~~~d~~gal~~~~~~~~~~~~----~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--lp--k~ 111 (375)
T 4dcm_A 40 GPVLILNDAFGALSCALAEHKPYSI----GDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK--VP--KT 111 (375)
T ss_dssp SCEEEECCSSSHHHHHTGGGCCEEE----ESCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSEEEEE--CC--SC
T ss_pred CCEEEECCCCCHHHHhhccCCceEE----EhHHHHHHHHHHHHHHcCCCccceEecccccccccCCCEEEEE--cC--CC
Confidence 5799999999999999987666543 2321 1222222 2344321111222223556899998652 11 23
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
...+...|.++...|+||+.+++...
T Consensus 112 ~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 112 LALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp HHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 33467788899999999999887654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=83.55 E-value=2.1 Score=42.73 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCeEEEeCCcchHHHHHhh
Q 021643 166 SVRNVMDMNASYGGFAAALI 185 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~ 185 (309)
...+|+|-.||+|+|.....
T Consensus 217 ~~~~I~DPacGsGgfL~~a~ 236 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAF 236 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHH
T ss_pred CCCEEEeCCCCcchHHHHHH
Confidence 34589999999999975543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=83.12 E-value=0.67 Score=43.24 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=32.4
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD 208 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e 208 (309)
++.+.+.++ ..++|.+||.|+.+.+|++++. .|.++|.. .++..+.+
T Consensus 15 le~L~~~~g--g~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 15 LDLLAVRPG--GVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKG 62 (285)
T ss_dssp HHHHTCCTT--CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHH
T ss_pred HHhhCCCCC--CEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHh
Confidence 334444443 5899999999999999998743 35566665 46665554
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=81.61 E-value=27 Score=32.38 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=23.9
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP 200 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s 200 (309)
-+|+|+-||.|+++..+...|..+ +..+|..
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG~~~--v~~~e~d 42 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCGAEC--VYSNEWD 42 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEE--EEEECCC
T ss_pred CcEEEECCCcCHHHHHHHHCCCeE--EEEEeCC
Confidence 579999999999999999888644 3344443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=81.49 E-value=4.7 Score=37.80 Aligned_cols=72 Identities=11% Similarity=0.028 Sum_probs=49.2
Q ss_pred CC-CCcceeEeccccccccccCC-HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCeeeee-----cceEEEE
Q 021643 225 YP-RTYDLLHSSFLLSDVTQRCD-IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWSTNIY-----HDQFLVG 297 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~~~~~~~-~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~~~~-----~e~~li~ 297 (309)
++ ..||+++-.. |+.-.+.+- -+.++.+|.|.++|||.++--.... .|++-++.-.+++... +.+.+++
T Consensus 182 l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTYtaag---~VRR~L~~aGF~V~k~~G~g~KReml~A 257 (308)
T 3vyw_A 182 VENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSYSSSL---SVRKSLLTLGFKVGSSREIGRKRKGTVA 257 (308)
T ss_dssp CCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEESCCCH---HHHHHHHHTTCEEEEEECC---CEEEEE
T ss_pred hcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEEeCcH---HHHHHHHHCCCEEEecCCCCCCCceeEE
Confidence 45 5799998754 654332221 1579999999999999998654443 5666677777877654 5578888
Q ss_pred EeC
Q 021643 298 KKG 300 (309)
Q Consensus 298 ~K~ 300 (309)
.++
T Consensus 258 ~~~ 260 (308)
T 3vyw_A 258 SLK 260 (308)
T ss_dssp ESS
T ss_pred ecC
Confidence 765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 309 | ||||
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 0.003 |
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 36.2 bits (82), Expect = 0.003
Identities = 29/137 (21%), Positives = 46/137 (33%), Gaps = 5/137 (3%)
Query: 135 PDSEEAFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNV 194
PD +F+ + D A +W++VR+V+D+ GGFAAA+ + V
Sbjct: 51 PDLRASFDSLLACDQDVAFDAPAA--AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSAT 108
Query: 195 V---PIDAPDTLSIIFDRGLIGMYHDWCESFNTYPRTYDLLHSSFLLSDVTQRCDIADVA 251
V S + D GL F + D +
Sbjct: 109 VLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRIL 168
Query: 252 VEMDRILRPGGYVLVQD 268
L PGG +L+ +
Sbjct: 169 TRCAEALEPGGRILIHE 185
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.67 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.66 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.65 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.63 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.6 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.59 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.55 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.51 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.5 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.5 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.49 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.49 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.49 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.46 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.43 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.42 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.42 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.38 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.38 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.38 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.36 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.3 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.29 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.24 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.19 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.19 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.13 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.11 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.08 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.08 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.06 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.03 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.02 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.02 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.01 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.98 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.85 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.84 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.82 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.72 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.69 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.69 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.67 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.6 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.55 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.54 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.53 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.37 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.35 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.34 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.26 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.13 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.11 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.1 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.08 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.08 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.07 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.06 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.99 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.94 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.93 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.84 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.68 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.66 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.63 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.61 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.38 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.28 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.26 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.22 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.21 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.13 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.04 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 96.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.75 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 96.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.17 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.09 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.08 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.76 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.71 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 95.64 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 95.57 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 95.36 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.15 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.11 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 94.46 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.42 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 92.99 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.88 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.76 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 91.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.18 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.8 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 88.24 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 88.14 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 87.56 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 87.26 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 85.4 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 81.97 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.65 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 80.78 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.67 E-value=2.6e-17 Score=142.84 Aligned_cols=103 Identities=20% Similarity=0.251 Sum_probs=78.8
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RT 228 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~s 228 (309)
++..++.. ..+|||+|||+|.++..|++.+. .++++|.+ ++++.|.++ |. +......++ .+||| ++
T Consensus 8 l~~~~l~~--~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~-~l~~~~~~ 81 (231)
T d1vl5a_ 8 MQIAALKG--NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-QMPFTDER 81 (231)
T ss_dssp HHHHTCCS--CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTC
T ss_pred HHhcCCCC--cCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccc-cccccccc
Confidence 33444544 35899999999999999998865 45677877 688877654 33 222222223 58999 99
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||+|+|..+++|+.+ ++.+|.|+.|+|||||+++|.+
T Consensus 82 fD~v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPN---PASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccCC---HHHHHHHHHHhcCCCcEEEEEe
Confidence 999999999999864 7889999999999999999975
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=5.1e-17 Score=142.71 Aligned_cols=100 Identities=18% Similarity=0.334 Sum_probs=78.2
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc--chhhhhccccCCCCC-CCcce
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL--IGMYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig~~~d~ce~~lpfP-~sFDl 231 (309)
..++++ .+|||+|||+|.++..|++++. +++++|.+ .|++.|.++ |+ +.....-.+ .+||| ++||+
T Consensus 12 ~~~~~~--~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~-~~~~~~~~fD~ 85 (234)
T d1xxla_ 12 AECRAE--HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLPFPDDSFDI 85 (234)
T ss_dssp HTCCTT--CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT-BCCSCTTCEEE
T ss_pred hCCCCC--CEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccc-cccccccccce
Confidence 345444 5899999999999999998764 56788888 688877654 33 212221123 58999 99999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+|..+++|+++ +..+|.|+.|+|||||++++.+
T Consensus 86 v~~~~~l~~~~d---~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 86 ITCRYAAHHFSD---VRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEEESCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeceeecccC---HHHHHHHHHHeeCCCcEEEEEE
Confidence 999999998864 7889999999999999999975
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=9.4e-17 Score=139.47 Aligned_cols=94 Identities=19% Similarity=0.345 Sum_probs=77.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchh-hhhccccCCCCC-CCcceeEec-cccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGM-YHDWCESFNTYP-RTYDLLHSS-FLLSDVTQ 243 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~-~~d~ce~~lpfP-~sFDlVh~~-~v~~~~~~ 243 (309)
.+|||+|||+|.++..|++.+. .|+++|.+ .|++.|.+++.... ..+ . ..+||+ ++||+|+|. .+++|+++
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~-~-~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 44 CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAK-A-EDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECC-T-TSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CEEEEECCCCchhcccccccce---EEEEeeccccccccccccccccccccc-c-cccccccccccceeeecchhhhhhh
Confidence 5799999999999999999875 46777887 69999999986322 223 2 258999 999999985 68888764
Q ss_pred cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 244 RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 244 ~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
...+|.|+.|+|||||.++++..
T Consensus 119 ---~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 119 ---KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp ---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---HHHHHHHHHhhcCcCcEEEEEEC
Confidence 67899999999999999999864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=1.3e-16 Score=136.95 Aligned_cols=96 Identities=22% Similarity=0.337 Sum_probs=76.7
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCCCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++..|++.+. .|+++|.+ +|++.|.++ +. +. ...| . ..+|++ ++||+|+|..+++
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d-~-~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGD-A-RKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECC-T-TSCCSCTTCEEEEEEESCGG
T ss_pred CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccc-c-ccccccCcCceEEEEecchh
Confidence 5899999999999999999875 46777887 688888765 32 11 1112 1 258999 9999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+++ .++.++|.|+.|+|||||++++.+.
T Consensus 114 ~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 114 HFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp GCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9864 3578899999999999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.60 E-value=7e-16 Score=139.33 Aligned_cols=94 Identities=21% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccc---h-hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLI---G-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----gli---g-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||+|||+|+++..|+++ +. +|+++|.+ .+++.+.++ |+. . ...|. ..+||| ++||+|+|.
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~--~~l~~~~~sfD~V~~~ 142 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF--LEIPCEDNSYDFIWSQ 142 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--TSCSSCTTCEEEEEEE
T ss_pred CCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhccccccccccccccccccc--ccccccccccchhhcc
Confidence 469999999999999999875 43 45677776 577766654 442 1 12233 258999 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+|+|+++ ...+|.|+.|+|||||++++.+
T Consensus 143 ~~l~h~~d---~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 143 DAFLHSPD---KLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp SCGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhccC---HHHHHHHHHHhcCCCcEEEEEE
Confidence 99999874 6889999999999999999975
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=5e-16 Score=133.29 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=73.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEeccccccccccC
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRC 245 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~ 245 (309)
.+|||+|||+|.++..+.+. +++|.+ .+++.+.+|++.-...+ ++ .+|++ ++||+|+|+.+++|+++
T Consensus 38 ~~vLDiGcG~G~~~~~~~~~-------~giD~s~~~~~~a~~~~~~~~~~d-~~-~l~~~~~~fD~I~~~~~l~h~~d-- 106 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGT-AE-NLPLKDESFDFALMVTTICFVDD-- 106 (208)
T ss_dssp SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECB-TT-BCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CeEEEECCCCcccccccceE-------EEEeCChhhccccccccccccccc-cc-ccccccccccccccccccccccc--
Confidence 37999999999999988642 345666 69999999986433333 22 58898 99999999999999964
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeC
Q 021643 246 DIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 246 ~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+..+|.|+.|+|||||.+++.+.
T Consensus 107 -~~~~l~~~~~~L~pgG~l~i~~~ 129 (208)
T d1vlma_ 107 -PERALKEAYRILKKGGYLIVGIV 129 (208)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccchhhhhhcCCCCceEEEEec
Confidence 78899999999999999999863
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.55 E-value=2.1e-15 Score=131.68 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=78.8
Q ss_pred CCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|..+..|++.- --..+|+++|.| +|++.|.++ +....++-.+....++| ..||+|+|+.+++
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l~ 119 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 119 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCGG
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeecc
Confidence 3589999999999998887631 012367888998 799999875 33333333334467888 9999999999998
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|++ ..+...+|+||+|+|||||.+++.|
T Consensus 120 ~~~-~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 120 FLP-PEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GSC-GGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccC-hhhHHHHHHHHHHhCCCCceeeccc
Confidence 875 3468899999999999999999986
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=5.9e-15 Score=130.38 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=74.7
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-C
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-R 227 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~ 227 (309)
.+++.++ .+|||+|||+|.++..|+++ +.. |+++|.+ .+++.+.++ |+.. ...|. + .+ ++ +
T Consensus 28 ~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~-~-~~-~~~~ 99 (245)
T d1nkva_ 28 VLRMKPG--TRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA-A-GY-VANE 99 (245)
T ss_dssp HTCCCTT--CEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC-T-TC-CCSS
T ss_pred HcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHH-h-hc-cccC
Confidence 4556554 58999999999999999874 544 4566777 677777665 5421 22332 1 23 45 9
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+||+|+|..+++|+.+ +..+|.|+.|+|||||++++.+
T Consensus 100 ~fD~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 100 KCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp CEEEEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEE
T ss_pred ceeEEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEe
Confidence 9999999999999874 5789999999999999999986
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=8.6e-15 Score=128.22 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=75.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCCCCCCcceeEec-cc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYPRTYDLLHSS-FL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lpfP~sFDlVh~~-~v 237 (309)
+..+|||+|||+|.++..|++.+. +++++|.+ +|+..|.++ ++ +. ..+|. ..++++++||+|+|. .+
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~--~~l~~~~~fD~I~~~~~~ 115 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV--LEIAFKNEFDAVTMFFST 115 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG--GGCCCCSCEEEEEECSSG
T ss_pred CCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhh--hhcccccccchHhhhhhh
Confidence 356899999999999999999875 56777888 688888776 33 11 12232 247888999999996 56
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+. ..+...+|.+++|+|||||++++...
T Consensus 116 ~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 116 IMYFD-EEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCC-hHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 77764 34678899999999999999998643
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-14 Score=127.07 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=89.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc------h-hhhhccccCCCCC-CCcceeEec
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI------G-MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli------g-~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
.+..+|||+|||+|.++..|+.+.. ..|+++|.+ +|++.|.++.-. . ...|. + .++++ ++||+|++.
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~-~-~~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-Q-DFTPEPDSYDVIWIQ 134 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-G-GCCCCSSCEEEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccc-c-ccccccccccccccc
Confidence 3457899999999999999876543 246677887 699998877421 1 11122 2 36777 999999999
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---------------HHHHHHHHHHHcCCCeeee
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---------------EMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~~~i~~l~~~l~W~~~~ 289 (309)
.+++|+++. ++..+|.++.|+|||||.+++.|.. ...++++++++.-.++..-
T Consensus 135 ~~l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 135 WVIGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cccccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 999998753 4668999999999999999998531 1367788888877776543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.50 E-value=1.6e-14 Score=127.25 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=75.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCCCCCCcceeEec-ccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYPRTYDLLHSS-FLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lpfP~sFDlVh~~-~v~ 238 (309)
..+|||+|||+|.++..|++++. +++++|.| +|++.|.+| |+ +. ...|.. .++++++||+|+|. .++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~--~~~~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS--NLNINRKFDLITCCLDST 112 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG--GCCCSCCEEEEEECTTGG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchh--hhcccccccccceeeeee
Confidence 36899999999999999999875 56788988 699988775 33 11 122321 24556999999986 678
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+|+.+..++..+|.++.|.|||||.|++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 88876667889999999999999999975
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.49 E-value=1.2e-14 Score=127.14 Aligned_cols=94 Identities=17% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---chhhhhccccCCCCCCCcceeEecccccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---IGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---ig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
..+|||+|||+|.++..|++.+. .|+++|.+ ++++.|.++.- .-...+. + ..+++++||+|+|..+|+|+.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~-~-~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRF-E-DAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCG-G-GCCCSSCEEEEEEESCGGGCS
T ss_pred CCcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccc-c-ccccccccccccccceeEecC
Confidence 35799999999999999998764 35666777 68899887742 1111221 2 345569999999999999986
Q ss_pred ccCCHHHHHHHHh-hcccCCeEEEEEe
Q 021643 243 QRCDIADVAVEMD-RILRPGGYVLVQD 268 (309)
Q Consensus 243 ~~~~~~~~L~Em~-RVLRPGG~lii~D 268 (309)
+ ...+|.|+. |+|||||++++..
T Consensus 96 d---~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 96 D---PVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp S---HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred C---HHHHHHHHHHHhcCCCceEEEEe
Confidence 4 678999997 8999999999974
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.49 E-value=4.2e-15 Score=124.00 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=78.5
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----c---h------------hh
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----I---G------------MY 215 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----i---g------------~~ 215 (309)
|+..|.+.+ ..+|||+|||+|..+.+|+++|. +|+++|.| +|++.+.++.- . + ..
T Consensus 12 ~~~~l~~~~--~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 12 YWSSLNVVP--GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp HHHHHCCCT--TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHcCCCC--CCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 566666554 35899999999999999999885 56777888 69999887621 0 0 01
Q ss_pred hhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 216 HDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 216 ~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.++ ....+++ .+||+|+++.+++|+.. .+...++.+|.|+|||||++++..
T Consensus 87 ~d~-~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 87 GDF-FALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp ECC-SSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccc-cccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEEE
Confidence 111 1112345 89999999999998864 346789999999999999988753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.49 E-value=1.7e-14 Score=131.15 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch--hhhhccccCCCCCCCcceeEeccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG--MYHDWCESFNTYPRTYDLLHSSFL 237 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig--~~~d~ce~~lpfP~sFDlVh~~~v 237 (309)
.+..+|||+|||+|.++..|++.--....|+++|.+ .+++.|.++ ++.. ...|. + .++++++||+|+|+.+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~-~~~~~~~fD~v~~~~~ 103 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA-T-EIELNDKYDIAICHAF 103 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT-T-TCCCSSCEEEEEEESC
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc-c-cccccCCceEEEEehh
Confidence 345789999999999999998741111245667777 578877665 3211 12232 1 4677888999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++|+++ +..+|.++.|+|||||++++.|.
T Consensus 104 l~~~~d---~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 104 LLHMTT---PETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp GGGCSS---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhcCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence 999874 67899999999999999999763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.46 E-value=2.2e-14 Score=128.96 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhh-hhccccCCCCC-CCcceeEeccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMY-HDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~-~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
.+..+|||+|||+|.++..|+.+... .|..+|.+ .+++.|.++.- +..+ .+. ..++++ ++||+|+|..+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~--~~~~~~~~~fD~I~~~~v 167 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASM--ETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCG--GGCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccc--cccccCCCccceEEeecc
Confidence 44578999999999999998764321 45666777 68998887632 1111 121 246777 99999999999
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHH----------------HHHHHHHHHHcCCCeee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE----------------MINKLKPVLHSLQWSTN 288 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~----------------~~~~i~~l~~~l~W~~~ 288 (309)
++|+++. ++..+|.++.|+|||||+++|.|... ..+.++++.+.-.+++.
T Consensus 168 l~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 168 AIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred ccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEE
Confidence 9999753 46789999999999999999976321 14566777665556543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=6.8e-14 Score=128.11 Aligned_cols=107 Identities=11% Similarity=0.137 Sum_probs=77.0
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----CcchhhhhccccCCCCCCCc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDWCESFNTYPRTY 229 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~ce~~lpfP~sF 229 (309)
.++.+++.++ .+|||+|||.|+++.+++++ +. .|++++.+ ++++.|.+| |+.............++++|
T Consensus 44 ~~~~l~l~~g--~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 44 NLDKLDLKPG--MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHTTSCCCTT--CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHcCCCCC--CEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 4556666654 58999999999999999875 54 45555666 466555544 65322211111223456999
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|.|++..+|+|+.+ .+...+++++.|+|||||.++|.+
T Consensus 119 D~i~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 119 DRIVSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SEEEEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEE
Confidence 99999999999974 357889999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.43 E-value=2.3e-14 Score=127.45 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=73.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-------c-hhhhhccccCCCC-C-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-------I-GMYHDWCESFNTY-P-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-------i-g~~~d~ce~~lpf-P-~sFDlVh~~ 235 (309)
..+|||+|||+|+.+..+++.+.. .++++|.+ .|++.|.+|.. + -...|. . ..++ + ++||+|+|.
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~-~-~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS-Y-GRHMDLGKEFDVISSQ 100 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT-T-TSCCCCSSCEEEEEEE
T ss_pred cCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch-h-hhcccccccceEEEEc
Confidence 358999999999999999886542 46777888 68998887632 1 112221 1 2444 4 899999999
Q ss_pred cccccccc-cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 236 FLLSDVTQ-RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 236 ~v~~~~~~-~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+++|+.+ ..++..+|.++.|+|||||++++...
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 99998743 34567899999999999999998643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=1.4e-13 Score=127.03 Aligned_cols=107 Identities=7% Similarity=-0.004 Sum_probs=76.4
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHH----HHhcCcchhhhhccccCCCCC-CC
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSI----IFDRGLIGMYHDWCESFNTYP-RT 228 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~----a~eRglig~~~d~ce~~lpfP-~s 228 (309)
.++.+++.+| .+|||+|||.|+++.++++ .++.+ ++++.+ +++.. +.+.|+......-+ ...+++ ++
T Consensus 53 ~~~~l~l~~G--~~VLDiGCG~G~~~~~~a~~~g~~v---~git~s~~q~~~a~~~~~~~~l~~~v~~~~-~d~~~~~~~ 126 (291)
T d1kpia_ 53 ALDKLNLEPG--MTLLDIGCGWGSTMRHAVAEYDVNV---IGLTLSENQYAHDKAMFDEVDSPRRKEVRI-QGWEEFDEP 126 (291)
T ss_dssp HHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHCCEE---EEEESCHHHHHHHHHHHHHSCCSSCEEEEE-CCGGGCCCC
T ss_pred HHHhcCCCCC--CEEEEecCcchHHHHHHHHhcCcce---eeccchHHHHHHHHHHHHhhccchhhhhhh-hcccccccc
Confidence 4566777665 5899999999999999986 46544 444555 34444 44557643222111 134566 99
Q ss_pred cceeEecccccccccc------CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 229 YDLLHSSFLLSDVTQR------CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~------~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
||.|+|..+|+|+.+. .....++++++|+|||||.+++.+
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 9999999999998753 236789999999999999999864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=1.2e-13 Score=118.29 Aligned_cols=95 Identities=21% Similarity=0.324 Sum_probs=73.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc---hhhhhccccCCCCCCCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI---GMYHDWCESFNTYPRTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli---g~~~d~ce~~lpfP~sFDlVh~~~v~~ 239 (309)
.+|||+|||+|.++.+|++++. .|+++|.+ .+++.+.+ .|+. ....|. ..++++++||+|+|..+|+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~~~~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--NTLTFDGEYDFILSTVVMM 106 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--TTCCCCCCEEEEEEESCGG
T ss_pred CcEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheec--ccccccccccEEEEeeeee
Confidence 4799999999999999999985 45667777 57776543 3442 122232 1345569999999999999
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+++ .+..++|.++.|+|||||++++..
T Consensus 107 ~~~~-~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 107 FLEA-QTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp GSCT-THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCH-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9864 457889999999999999999964
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=7.8e-14 Score=122.39 Aligned_cols=119 Identities=8% Similarity=0.052 Sum_probs=85.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----c-c-------------hhh------------
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----L-I-------------GMY------------ 215 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----l-i-------------g~~------------ 215 (309)
..+|||+|||+|.++..++..+. ..|+++|.+ ++++.|.++- . . +.+
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 46899999999999877776653 367888888 6888876541 1 0 000
Q ss_pred ---------hhccccCCCCC-CCcceeEecccccccccc-CCHHHHHHHHhhcccCCeEEEEEeCHH-------------
Q 021643 216 ---------HDWCESFNTYP-RTYDLLHSSFLLSDVTQR-CDIADVAVEMDRILRPGGYVLVQDTLE------------- 271 (309)
Q Consensus 216 ---------~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~-~~~~~~L~Em~RVLRPGG~lii~D~~~------------- 271 (309)
........|++ ++||+|++..+++|+... .++..++.++.|+|||||++++.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~ 209 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSC 209 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEEC
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccc
Confidence 00001134788 999999999999998532 357789999999999999999976211
Q ss_pred ---HHHHHHHHHHcCCCee
Q 021643 272 ---MINKLKPVLHSLQWST 287 (309)
Q Consensus 272 ---~~~~i~~l~~~l~W~~ 287 (309)
..+.++++++.-.+++
T Consensus 210 ~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 210 VALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCHHHHHHHHHHTTEEE
T ss_pred cCCCHHHHHHHHHHCCCEE
Confidence 2567777887777754
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.5e-14 Score=127.53 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h-hhhhccccCCCCC-CCcceeEecccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G-MYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g-~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
.+..+|||+|||+|.++..|++.... ..++++|.+ .+++.|.++... . ...|. ..+||+ ++||+|++..+++|
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~-~~~~giD~s~~~~~~a~~~~~~~~~~~~d~--~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPE-ITTFGLDVSKVAIKAAAKRYPQVTFCVASS--HRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTT-SEEEEEESCHHHHHHHHHHCTTSEEEECCT--TSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCC-CEEEEecchHhhhhhhhcccccccceeeeh--hhccCCCCCEEEEeecCCHHH
Confidence 34568999999999999999886311 245667887 689999887642 1 12231 268999 99999999876653
Q ss_pred ccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 241 VTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 241 ~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+.|+.|+|||||++++...
T Consensus 160 ----------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 160 ----------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ----------HHHHHHHEEEEEEEEEEEE
T ss_pred ----------HHHHHHHhCCCcEEEEEee
Confidence 6799999999999999864
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.38 E-value=1.4e-13 Score=122.74 Aligned_cols=101 Identities=29% Similarity=0.544 Sum_probs=71.4
Q ss_pred CCCCCCCeEEEeCCcchHHHHHhhcC--CCEEEEecccCCcccHHHHH----hcCcch----hhhhccccCCCCCCCcce
Q 021643 162 INWSSVRNVMDMNASYGGFAAALIDQ--PLWVMNVVPIDAPDTLSIIF----DRGLIG----MYHDWCESFNTYPRTYDL 231 (309)
Q Consensus 162 i~~~~~r~VLD~GCG~G~faa~L~~~--~v~v~~V~p~d~s~~l~~a~----eRglig----~~~d~ce~~lpfP~sFDl 231 (309)
++..+.++|||+|||+|.++..|+++ ++.+ +.+|.+++++.+. +.|+.. ..+|. +.+.|.+||+
T Consensus 76 ~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~~~~~~D~ 149 (253)
T d1tw3a2 76 YDWTNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADA 149 (253)
T ss_dssp SCCTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEE
T ss_pred cCCccCCEEEEeCCCCCHHHHHHHHhcceeEE---EEccCHHHHHHHHHHHHHhhcccchhhccccc---hhhcccchhh
Confidence 34456789999999999999999874 3333 3344444554444 345422 11221 3345688999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
|+++.+|+|+.+ .+...+|+++.|+|||||+++|.|.
T Consensus 150 v~~~~vlh~~~d-~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 150 IILSFVLLNWPD-HDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp EEEESCGGGSCH-HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred eeeccccccCCc-hhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999875 3456799999999999999999763
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.38 E-value=4.7e-13 Score=123.07 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=73.7
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHH----HhcCcchhhhhccccCCCCCCCc
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSII----FDRGLIGMYHDWCESFNTYPRTY 229 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a----~eRglig~~~d~ce~~lpfP~sF 229 (309)
.++.+++.+| .+|||+|||.|+++.++++ .++.| ++++.| .+++.| .+.|+.....-.+.....+|.+|
T Consensus 54 ~~~~l~l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v---~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 54 ALGKLGLQPG--MTLLDVGCGWGATMMRAVEKYDVNV---VGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHTTTTCCTT--CEEEEETCTTSHHHHHHHHHHCCEE---EEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHcCCCCC--CEEEEecCcchHHHHHHHhcCCcce---EEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 5566777665 5899999999999999887 45544 344444 344444 44455321111011122335899
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|.|.+...|+|+.+ .+...++.+++|+|||||.+++.+
T Consensus 129 D~i~si~~~eh~~~-~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 129 DRIVSIGAFEHFGH-ERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp SEEEEESCGGGTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cceeeehhhhhcCc-hhHHHHHHHHHhhcCCCCcEEEEE
Confidence 99999999999864 346789999999999999999853
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.38 E-value=1.8e-13 Score=124.04 Aligned_cols=99 Identities=14% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC----cchh-----h--hhcc--ccCCCCCCCccee
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG----LIGM-----Y--HDWC--ESFNTYPRTYDLL 232 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg----lig~-----~--~d~c--e~~lpfP~sFDlV 232 (309)
.++|||+|||+|.++..|++++. +|+++|.| +|++.|.++. .... . .++- +...|+.++||+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 46899999999999999999874 57788988 6898887652 2111 0 1111 1124555899999
Q ss_pred Eec-ccccccccc----CCHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSS-FLLSDVTQR----CDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~-~v~~~~~~~----~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|. .+|.|+++. .+...+|+|+.|+|||||+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 985 578887642 246789999999999999999964
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.3e-13 Score=119.61 Aligned_cols=98 Identities=12% Similarity=0.234 Sum_probs=71.7
Q ss_pred CeEEEeCCcchHHHHHhhcC-----CCEEEEecccCCc-ccHHHHHhcC-----cchhhhhc---------cccCCCCC-
Q 021643 168 RNVMDMNASYGGFAAALIDQ-----PLWVMNVVPIDAP-DTLSIIFDRG-----LIGMYHDW---------CESFNTYP- 226 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~-----~v~v~~V~p~d~s-~~l~~a~eRg-----lig~~~d~---------ce~~lpfP- 226 (309)
-+|||+|||+|.++..|++. +.....++++|.+ .|++.+.++- +...-.+| .....+++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999998777542 2234567888888 6888887751 11000000 01135777
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++||+|+|.++|+|+++ +..+|.+++|+|||||+++|..
T Consensus 122 ~~fD~I~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~i~~ 160 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVKD---IPATLKFFHSLLGTNAKMLIIV 160 (280)
T ss_dssp CCEEEEEEESCGGGCSC---HHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceeEEEEccceecCCC---HHHHHHHHHhhCCCCCEEEEEE
Confidence 99999999999999864 7889999999999999998864
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=2e-13 Score=120.23 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc------chhhhhc
Q 021643 146 THWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDW 218 (309)
Q Consensus 146 ~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl------ig~~~d~ 218 (309)
..|.+.+.+...+.+. .. ..+|||+|||+|.++.++++.+. -+++.+|.+ .+++.|.++.- .....++
T Consensus 36 ~~w~~~~~~~la~~~~-~~--g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~ 110 (229)
T d1zx0a1 36 ERWETPYMHALAAAAS-SK--GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW 110 (229)
T ss_dssp EGGGHHHHHHHHHHHT-TT--CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH
T ss_pred HHHHHHHHHHHHHhhc-cC--CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccc
Confidence 3476655442322222 22 35899999999999999998753 357778887 68888877642 1112222
Q ss_pred cccCCCCC-CCcceeEe-----ccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 219 CESFNTYP-RTYDLLHS-----SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 219 ce~~lpfP-~sFDlVh~-----~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.....++| ++||.|+. ...+.|+. +.+.++.|+.|+|||||.|++.+
T Consensus 111 ~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~---~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 111 EDVAPTLPDGHFDGILYDTYPLSEETWHTH---QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp HHHGGGSCTTCEEEEEECCCCCBGGGTTTH---HHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccccccceeeccccccccccccc---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 22345778 88888874 44444544 36789999999999999999854
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1e-12 Score=115.15 Aligned_cols=115 Identities=10% Similarity=-0.042 Sum_probs=83.1
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcc-h-----------------------hhhhcccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLI-G-----------------------MYHDWCES 221 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgli-g-----------------------~~~d~ce~ 221 (309)
..+|||+|||+|..+.+|+++|. +|+++|.| .+++.++++.-. . ...|.. .
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~-~ 121 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF-D 121 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG-G
T ss_pred CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh-h
Confidence 45899999999999999999986 56888998 688877765310 0 011111 1
Q ss_pred CCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH------------HHHHHHHHHHHcCCCee
Q 021643 222 FNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL------------EMINKLKPVLHSLQWST 287 (309)
Q Consensus 222 ~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~------------~~~~~i~~l~~~l~W~~ 287 (309)
..+++ ++||+|+...+|+|++. .+.+.++.+|.|+|||||++++.... -..++++++... .|++
T Consensus 122 l~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp GGGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEE
T ss_pred ccccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEE
Confidence 23556 99999999999999864 45789999999999999988776321 024567777654 3554
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.29 E-value=7.8e-13 Score=118.80 Aligned_cols=101 Identities=31% Similarity=0.455 Sum_probs=72.3
Q ss_pred CCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHH----hcCcchh----hhhccccCCCCCCCcceeE
Q 021643 163 NWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIF----DRGLIGM----YHDWCESFNTYPRTYDLLH 233 (309)
Q Consensus 163 ~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~----eRglig~----~~d~ce~~lpfP~sFDlVh 233 (309)
+....++|||+|||+|.++..|+++ +- +.++..|.+++++.+. +.|+... .+| .+.+.|.+||+|+
T Consensus 78 d~~~~~~vlDvG~G~G~~~~~l~~~~P~--~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d---~~~~~p~~~D~v~ 152 (256)
T d1qzza2 78 DWSAVRHVLDVGGGNGGMLAAIALRAPH--LRGTLVELAGPAERARRRFADAGLADRVTVAEGD---FFKPLPVTADVVL 152 (256)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTT--CEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECC---TTSCCSCCEEEEE
T ss_pred CCccCCEEEEECCCCCHHHHHHHHhhcC--cEEEEecChHHHHHHHHHHhhcCCcceeeeeeee---ccccccccchhhh
Confidence 3456789999999999999999984 21 1334456555554443 4454221 122 2346677799999
Q ss_pred eccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 234 SSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 234 ~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+.++|+|+.+ .+...+|.++.|+|||||.++|.|.
T Consensus 153 ~~~vLh~~~d-~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 153 LSFVLLNWSD-EDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp EESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccccccCc-HHHHHHHHHHHhhcCCcceeEEEEe
Confidence 9999999874 3456789999999999999999875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.24 E-value=1.2e-11 Score=105.78 Aligned_cols=115 Identities=14% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCCCCC-CCcceeEe
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+..+|||+|||+|.++.+|++... ++..+|.+ .++..+.++ ++.. ... +..+.+++ ++||+|+|
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~--~d~~~~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVH--SDLYENVKDRKYNKIIT 125 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEE--CSTTTTCTTSCEEEEEE
T ss_pred CCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEE--cchhhhhccCCceEEEE
Confidence 3457899999999999999988653 45566776 567766653 3311 111 11234566 99999999
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCe
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWS 286 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~ 286 (309)
+..+++..+ ..+.++.++.|+|||||.+++... ...-+.+...++..-++
T Consensus 126 ~~p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~ 176 (194)
T d1dusa_ 126 NPPIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGN 176 (194)
T ss_dssp CCCSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSC
T ss_pred cccEEecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCc
Confidence 988875442 246789999999999998877532 22233444444443333
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.1e-11 Score=112.00 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=79.0
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcchh-h-hhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGM-Y-HDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig~-~-~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++.++++.+.. |+++|.+ .+++.|++ .|+... . .+. ...++ ++||+|+|+.+.
T Consensus 121 g~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~---~~~~~~~~fD~V~ani~~ 194 (254)
T d2nxca1 121 GDKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EAALPFGPFDLLVANLYA 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HHHGGGCCEEEEEEECCH
T ss_pred cCEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEeccc---cccccccccchhhhcccc
Confidence 358999999999999999988753 5567777 57776664 344211 1 111 23567 899999998555
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeeee
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~ 289 (309)
++ +.+++.++.|+|||||++++++- .+..+.+.+.+++..|+...
T Consensus 195 ~~------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 195 EL------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HH------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred cc------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEE
Confidence 42 45689999999999999999864 23346677777777787543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4e-12 Score=114.11 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=81.4
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--cchhh---------------------------
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--LIGMY--------------------------- 215 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--lig~~--------------------------- 215 (309)
+..+|||+|||+|.+...++...+ .+|+++|.+ +|++.+.++- -.+.+
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 346899999999988765555433 368888998 6888776431 00000
Q ss_pred --------hhccc----cCCCCC-CCcceeEecccccccc-ccCCHHHHHHHHhhcccCCeEEEEEeCH-----------
Q 021643 216 --------HDWCE----SFNTYP-RTYDLLHSSFLLSDVT-QRCDIADVAVEMDRILRPGGYVLVQDTL----------- 270 (309)
Q Consensus 216 --------~d~ce----~~lpfP-~sFDlVh~~~v~~~~~-~~~~~~~~L~Em~RVLRPGG~lii~D~~----------- 270 (309)
.|... ...+++ ++||+|.+.++++|++ +..++..+|.++.|+|||||++++.+..
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 01101 112344 7899999999999985 3346889999999999999999997531
Q ss_pred -----HHHHHHHHHHHcCCCee
Q 021643 271 -----EMINKLKPVLHSLQWST 287 (309)
Q Consensus 271 -----~~~~~i~~l~~~l~W~~ 287 (309)
-..+.+++++..-..++
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v 233 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKV 233 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeE
Confidence 02466777776666554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.13 E-value=7.8e-11 Score=100.18 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccccCCCCC-C
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYP-R 227 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce~~lpfP-~ 227 (309)
+..+.+.+ ..+|||+|||+|.++..|+.... .|.++|.+ ++++.|.++ |+. ..++.... ..+++ .
T Consensus 26 l~~l~~~~--g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~-~~~~~~~ 99 (186)
T d1l3ia_ 26 MCLAEPGK--NDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP-EALCKIP 99 (186)
T ss_dssp HHHHCCCT--TCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH-HHHTTSC
T ss_pred HHhcCCCC--CCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh-hcccccC
Confidence 33444443 46899999999999999988754 35566776 577766654 441 11221111 24566 9
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHHHHHHcCCCeeee
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-LEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~~l~~~l~W~~~~ 289 (309)
+||+|++.....+ +++++.++.+.|||||++++... .+....+.+..+...++...
T Consensus 100 ~~D~v~~~~~~~~------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~ 156 (186)
T d1l3ia_ 100 DIDIAVVGGSGGE------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (186)
T ss_dssp CEEEEEESCCTTC------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred CcCEEEEeCcccc------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEE
Confidence 9999998765443 56799999999999999999864 45566667777777775543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.11 E-value=1.3e-11 Score=109.83 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=80.0
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Cc-chhhhhccccCCCCC-CCcce
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GL-IGMYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig~~~d~ce~~lpfP-~sFDl 231 (309)
.+.+.+ ..+|||+|||+|.++..|++..-. ..|.++|.+ .|++.+.++ +. .-+..+. ....+|+ .+||+
T Consensus 69 ~l~ikp--G~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 69 VMPIKR--DSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCT--TCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTTCCCE
T ss_pred hCCCCC--CCEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEee-ccCccccccccee
Confidence 344544 458999999999999999974211 145677777 577766654 22 2233332 2234566 78888
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC----------HHHHHHHHHHHHcCCCee
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINKLKPVLHSLQWST 287 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~i~~l~~~l~W~~ 287 (309)
+++...++|.. +.+.++.++.|+|||||++++.+. ....+++.+.++.-..+.
T Consensus 145 ~~i~~~~~~~~---~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 145 DVIYEDVAQPN---QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp EEEEECCCSTT---HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEE
T ss_pred EEeeccccchH---HHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 77766666543 467899999999999999999742 234555555555544543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.2e-10 Score=107.08 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCC-EEEEecccCCc-ccHHHHHhcCcch---hh-hhccccCCCCC-CCcceeEeccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPL-WVMNVVPIDAP-DTLSIIFDRGLIG---MY-HDWCESFNTYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v-~v~~V~p~d~s-~~l~~a~eRglig---~~-~d~ce~~lpfP-~sFDlVh~~~v~~ 239 (309)
..+|||+|||+|.++..+++.+. .|..|...... .+.+.+...|+.. .. .+. ..+++| ++||+|++..+.+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~--~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV--EEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT--TTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH--HHcccccceeEEEeeeeeee
Confidence 36899999999999988888763 34444332222 2334455556522 11 121 257888 9999999987777
Q ss_pred cccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 240 DVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 240 ~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++.+...++.++.+++|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 776666789999999999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.08 E-value=1e-10 Score=107.91 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccH----HHHHhcCcch---hhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTL----SIIFDRGLIG---MYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l----~~a~eRglig---~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+.. .|.++|.++++ +.+.+.|+.. .++.-. ..+++| .+||+|++..++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~-~~l~~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKL-EDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSSSCEEEEEECCCB
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhCccccceEEEeeh-hhccCcccceeEEEEEecc
Confidence 358999999999999988887642 23444444333 3444556522 222111 257888 999999998888
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVL 265 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~li 265 (309)
+++.....++.++.+++|+|||||.++
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEE
Confidence 777766678899999999999999986
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.06 E-value=1.3e-10 Score=101.50 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=72.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHH----HHHhcCcc--h-hhhhccccCC-CCC-CCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLS----IIFDRGLI--G-MYHDWCESFN-TYP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~----~a~eRgli--g-~~~d~ce~~l-pfP-~sFDlVh~~~v 237 (309)
..|||+|||+|.++..|++..-- .++.++|.+ +++. .+.+.|+. . ...|. ...+ -|| ++||.|++.+.
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da-~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA-DTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG-GGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccch-hhhhcccCchhhhccccccc
Confidence 36999999999999999874211 256677766 4444 44555652 1 11221 1111 277 99999998766
Q ss_pred ccccccc-----CCHHHHHHHHhhcccCCeEEEEE-eCHHHHHHHHHHHH
Q 021643 238 LSDVTQR-----CDIADVAVEMDRILRPGGYVLVQ-DTLEMINKLKPVLH 281 (309)
Q Consensus 238 ~~~~~~~-----~~~~~~L~Em~RVLRPGG~lii~-D~~~~~~~i~~l~~ 281 (309)
..+.+.+ ---..+|.++.|+|||||.|.|. |...+.+.+.....
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~ 158 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFS 158 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHH
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHH
Confidence 6543321 01146999999999999998775 66776666665554
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.6e-10 Score=105.52 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=67.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc----cHHHHHhcCcc---hhhhhccccCCCCC-CCcceeEecccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD----TLSIIFDRGLI---GMYHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~----~l~~a~eRgli---g~~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
..+|||+|||+|.++..+++.+.. .|.++|.++ ....+.+.|.. ...+.-. ..+++| .+||+|++..+.
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~-~~l~~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI-EEVHLPVEKVDVIISEWMG 112 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT-TTSCCSCSCEEEEEECCCB
T ss_pred cCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH-HHhcCccccceEEEEeeee
Confidence 468999999999999999887641 234444442 23444455542 2222111 257888 999999998777
Q ss_pred ccccccCCHHHHHHHHhhcccCCeEEEE
Q 021643 239 SDVTQRCDIADVAVEMDRILRPGGYVLV 266 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~RVLRPGG~lii 266 (309)
++......++.++..++|.|||||+++-
T Consensus 113 ~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 113 YFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eecccccccHHHHHHHHhcCCCCcEEec
Confidence 7665544577888889999999999874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=1.6e-10 Score=102.68 Aligned_cols=131 Identities=13% Similarity=0.161 Sum_probs=80.0
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHh----cCc-chhhhhccc-cCCCCC-C
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFD----RGL-IGMYHDWCE-SFNTYP-R 227 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~e----Rgl-ig~~~d~ce-~~lpfP-~ 227 (309)
.+.+.+| .+|||+|||+|.++.+|++. .. .|.++|.+ .+++.+.+ ++. ..+..|-.. ...+.. .
T Consensus 68 ~l~i~pG--~~VLDlGaGsG~~t~~la~~VG~~G---~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 68 NFPIKPG--KSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCTT--CEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCC
T ss_pred ccccCCC--CEEEEeccCCCHHHHHHHHHhCCCC---EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccccccc
Confidence 3445554 59999999999999999973 22 24555665 45555443 332 222222111 122334 7
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC----------HHHHHHHHHHHHcCCCeeeee-------
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT----------LEMINKLKPVLHSLQWSTNIY------- 290 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~----------~~~~~~i~~l~~~l~W~~~~~------- 290 (309)
.+|+|++. +.|. .+...++.++.|+|||||+++|... ..+..+++++.+. .++..-.
T Consensus 143 ~vD~i~~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~ 216 (227)
T d1g8aa_ 143 KVDVIFED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYE 216 (227)
T ss_dssp CEEEEEEC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTS
T ss_pred ceEEEEEE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCC
Confidence 88988764 3332 2356799999999999999999731 3355666666543 4543211
Q ss_pred -cceEEEEEeC
Q 021643 291 -HDQFLVGKKG 300 (309)
Q Consensus 291 -~e~~li~~K~ 300 (309)
+.-+.|+||+
T Consensus 217 ~~H~~vv~rK~ 227 (227)
T d1g8aa_ 217 KDHALFVVRKT 227 (227)
T ss_dssp SSEEEEEEECC
T ss_pred CceEEEEEEeC
Confidence 3456778774
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=3.1e-10 Score=99.16 Aligned_cols=101 Identities=13% Similarity=0.079 Sum_probs=61.9
Q ss_pred cCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcc-hhhhhccccCCCCC-CCccee
Q 021643 160 LAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLI-GMYHDWCESFNTYP-RTYDLL 232 (309)
Q Consensus 160 l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rgli-g~~~d~ce~~lpfP-~sFDlV 232 (309)
+.++++ .+|||+|||+|+++.+|++.--.. .|.++|.+ .+++.+.+ ++.+ .+..+. + ..+.+ ..||.+
T Consensus 52 l~lkpg--~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~-~-~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGD--ERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDA-S-KPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSS--CEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCT-T-CGGGTTTTCCCE
T ss_pred CCCCCC--CEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeec-c-CccccccccceE
Confidence 445544 589999999999999998731111 46777877 56665544 3322 222221 1 12222 444444
Q ss_pred Eec-cccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 233 HSS-FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 233 h~~-~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
.+. ..+.|. .+...++.|++|+|||||++++.+
T Consensus 127 d~v~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 127 DLIYQDIAQK---NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEEECCCST---THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEecccCh---hhHHHHHHHHHHHhccCCeEEEEE
Confidence 321 123333 346779999999999999999975
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.01 E-value=2.4e-10 Score=99.81 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=73.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHH----HhcCc--chhhhhccccCC-CCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSII----FDRGL--IGMYHDWCESFN-TYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a----~eRgl--ig~~~d~ce~~l-pfP-~sFDlVh~~~v~ 238 (309)
..|||+|||+|.++..|++..-. .+++++|.+ +++..+ .+.|+ +..++.-++..+ -|| .++|.|++.+--
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 47999999999999999874211 245566665 444444 44555 222221112122 368 999999876433
Q ss_pred c-----cccccCCHHHHHHHHhhcccCCeEEEE-EeCHHHHHHHHHHHHcCCCe
Q 021643 239 S-----DVTQRCDIADVAVEMDRILRPGGYVLV-QDTLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 239 ~-----~~~~~~~~~~~L~Em~RVLRPGG~lii-~D~~~~~~~i~~l~~~l~W~ 286 (309)
. |...+---..+|.++.|+|||||.+.| +|..++.+.+........+.
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~ 165 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMK 165 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcc
Confidence 2 111111125789999999999999977 56666666665555544443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=1.2e-10 Score=101.90 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Cc---chhhhhccccCCC
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GL---IGMYHDWCESFNT 224 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gl---ig~~~d~ce~~lp 224 (309)
.++.++++++ .+|||+|||+|.+++.|++. ... |..+|.+ .+++.+.++ ++ .....|. ...+
T Consensus 67 ~l~~l~l~~g--~~VLdiG~GtG~~s~~la~~~~~~g~---V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~--~~~~ 139 (213)
T d1dl5a1 67 FMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGL---VVSVEYSRKICEIAKRNVERLGIENVIFVCGDG--YYGV 139 (213)
T ss_dssp HHHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG--GGCC
T ss_pred HHHhhhcccc--ceEEEecCccchhHHHHHHHhCCCCc---EEEeecchhhHHHhhhhHhhhcccccccccCch--HHcc
Confidence 4556666654 59999999999999988762 222 3445554 466666554 22 1112221 1234
Q ss_pred CC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 225 YP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 225 fP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
++ ++||.|++...+++++ .++.|.|||||.+++-.
T Consensus 140 ~~~~~fD~I~~~~~~~~~p---------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGVDEVP---------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGGCCEEEEEECSBBSCCC---------HHHHHHEEEEEEEEEEB
T ss_pred ccccchhhhhhhccHHHhH---------HHHHHhcCCCcEEEEEE
Confidence 44 8999999999888764 25678899999998853
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=1.4e-09 Score=98.76 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=67.2
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcC------cc----hhhhhccccC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG------LI----GMYHDWCESF 222 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRg------li----g~~~d~ce~~ 222 (309)
+..+++.++ .+|||+|||+|+++.+|+.. .. .|..+|.+ ++++.|.++- .. -...|.. .
T Consensus 89 i~~l~i~PG--~~VLE~G~GsG~lt~~La~~vgp~G---~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~--~ 161 (264)
T d1i9ga_ 89 VHEGDIFPG--ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA--D 161 (264)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG--G
T ss_pred HHHhCCCCC--CEEEecCcCCcHHHHHHHHhhCCCc---EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccc--c
Confidence 334556554 59999999999999999863 22 24555666 5777776531 11 1122322 3
Q ss_pred CCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+|| ++||.|+. |+++ +..++.++.|+|||||.+++...
T Consensus 162 ~~~~~~~fDaV~l-----dlp~---P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 162 SELPDGSVDRAVL-----DMLA---PWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCCCTTCEEEEEE-----ESSC---GGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccccCCCcceEEE-----ecCC---HHHHHHHHHhccCCCCEEEEEeC
Confidence 6899 99999975 3443 34589999999999999888653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=9.7e-10 Score=99.60 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=72.8
Q ss_pred hccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhc----Ccchh----hhhccccCCCCC-
Q 021643 158 GGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDR----GLIGM----YHDWCESFNTYP- 226 (309)
Q Consensus 158 ~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eR----glig~----~~d~ce~~lpfP- 226 (309)
..+++.++ .+|||+|||+|+++.+|+.. +.. ..|..+|.+ ++++.|.++ |+... ..| ....|+
T Consensus 97 ~~l~i~pG--~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d---~~~~~~~ 170 (266)
T d1o54a_ 97 MMLDVKEG--DRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD---ISEGFDE 170 (266)
T ss_dssp HHTTCCTT--CEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC---GGGCCSC
T ss_pred HhhCCCCC--CEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc---ccccccc
Confidence 34556554 58999999999999999863 100 135566776 567666544 43211 112 124566
Q ss_pred CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHHcCCCe
Q 021643 227 RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLHSLQWS 286 (309)
Q Consensus 227 ~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~~l~W~ 286 (309)
..||.|+ .++++ +..+|.++.|+|||||.+++.. ..+.++++-+.++.-.|.
T Consensus 171 ~~~D~V~-----~d~p~---p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 171 KDVDALF-----LDVPD---PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp CSEEEEE-----ECCSC---GGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred cceeeeE-----ecCCC---HHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 7888774 44543 4568999999999999998754 344445554445444553
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.82 E-value=1.2e-09 Score=98.38 Aligned_cols=95 Identities=11% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccc----hhhhhccccCCCCC
Q 021643 159 GLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLI----GMYHDWCESFNTYP 226 (309)
Q Consensus 159 ~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----gli----g~~~d~ce~~lpfP 226 (309)
.+++.++ .+|||+|||+|.++.+|+.. .. .|..+|.+ ++++.|.++ +.. -...|.+ ..++
T Consensus 80 ~l~i~pG--~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~---~~~~ 151 (250)
T d1yb2a1 80 RCGLRPG--MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA---DFIS 151 (250)
T ss_dssp -CCCCTT--CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT---TCCC
T ss_pred HcCCCCc--CEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee---cccc
Confidence 4556554 58999999999999888862 22 34556666 577777764 221 1223332 2356
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++||.|+++ +++ ...+|.++.|+|||||++++...
T Consensus 152 ~~~fD~V~ld-----~p~---p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 152 DQMYDAVIAD-----IPD---PWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp SCCEEEEEEC-----CSC---GGGSHHHHHHTEEEEEEEEEEES
T ss_pred cceeeeeeec-----CCc---hHHHHHHHHHhcCCCceEEEEeC
Confidence 999999864 222 34589999999999999998754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.4e-09 Score=101.32 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=67.2
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhcC------------------cchh
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRG------------------LIGM 214 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRg------------------lig~ 214 (309)
+..+++.++ .+|||+|||+|+++.+|+.. ... |..+|.+ ++++.|.++- +.-.
T Consensus 91 l~~l~i~pG--~rVLE~GtGsG~lt~~LAr~vg~~G~---V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 91 LSMMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQGR---VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCE---EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHhCCCCC--CEEEEecccccHHHHHHHHHhCCCcE---EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 345566665 58999999999999999862 223 4445665 4666665431 0011
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-CHHHHHHHHHHHH--cCCCee
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-TLEMINKLKPVLH--SLQWST 287 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-~~~~~~~i~~l~~--~l~W~~ 287 (309)
..|.++....++ .+||.|+.. +++ +..+|.++.|+|||||.+++-- ..+.+.++-+.++ .+.|..
T Consensus 166 ~~di~~~~~~~~~~~fD~V~LD-----~p~---P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~ 234 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVALD-----MLN---PHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSC 234 (324)
T ss_dssp ESCTTCCC-------EEEEEEC-----SSS---TTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEE
T ss_pred ecchhhcccccCCCCcceEeec-----CcC---HHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCcee
Confidence 223333223456 899998752 332 2347999999999999988754 3443333333332 456653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=2.2e-09 Score=99.34 Aligned_cols=103 Identities=8% Similarity=0.083 Sum_probs=63.6
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc-----------Cc----chhh-hh
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR-----------GL----IGMY-HD 217 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR-----------gl----ig~~-~d 217 (309)
.++.+++.++ .+|||+|||+|.++..++. .+. ..+.++|.+ .++..|.+. |+ +... +|
T Consensus 143 ~~~~~~l~~~--~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 143 MIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHSCCCTT--CEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHcCCCCC--CEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 4455556544 5899999999999877765 332 134556665 455555432 11 1111 12
Q ss_pred ccccCCCCC-CCc--ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 218 WCESFNTYP-RTY--DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 218 ~ce~~lpfP-~sF--DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
. . .++|. ..| |+|+++. +.|.+ ++...|.|+.|+|||||.+|+.+
T Consensus 219 ~-~-~~~~~~~~~~advi~~~~-~~f~~---~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 219 F-L-SEEWRERIANTSVIFVNN-FAFGP---EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp T-T-SHHHHHHHHHCSEEEECC-TTTCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred c-c-ccccccccCcceEEEEcc-eecch---HHHHHHHHHHHhCCCCcEEEEec
Confidence 1 1 24555 555 5666654 44443 47789999999999999999864
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=4.9e-09 Score=92.33 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=57.5
Q ss_pred CCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHHHhc----Ccch--------hhhhccccCCCCC-CCc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDR----GLIG--------MYHDWCESFNTYP-RTY 229 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eR----glig--------~~~d~ce~~lpfP-~sF 229 (309)
..+|||+|||+|.+++.|++. ... |..+|.. ++++.+.++ ++.. ...|- ...+++ ++|
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g~---V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~--~~~~~~~~~f 151 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTGK---VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG--RMGYAEEAPY 151 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCE---EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG--GGCCGGGCCE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCce---EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec--ccccchhhhh
Confidence 458999999999988887762 223 3444555 455555432 3210 11121 124455 899
Q ss_pred ceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 230 DLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 230 DlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
|.|++...+.+.+ .++.+.|||||++++-
T Consensus 152 D~I~~~~~~~~ip---------~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 152 DAIHVGAAAPVVP---------QALIDQLKPGGRLILP 180 (224)
T ss_dssp EEEEECSBBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred hhhhhhcchhhcC---------HHHHhhcCCCcEEEEE
Confidence 9999998887654 3567899999999984
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=3.2e-09 Score=101.81 Aligned_cols=103 Identities=8% Similarity=0.005 Sum_probs=63.8
Q ss_pred HHhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHhcCcc------------h-----hhh
Q 021643 156 YVGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFDRGLI------------G-----MYH 216 (309)
Q Consensus 156 y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~eRgli------------g-----~~~ 216 (309)
.++.+++.++ .+|||+|||+|.++..++.. +. -.+.++|.+ .+++.|.++.-. + ...
T Consensus 208 Il~~l~Lkpg--d~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 208 VYQQCQLKKG--DTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHTTCCTT--CEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHhCCCCC--CEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 4455666554 58999999999998888763 32 134555666 466666554210 0 001
Q ss_pred hccccCCCC---C-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 217 DWCESFNTY---P-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 217 d~ce~~lpf---P-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+.. ..++ . ..+|+|+++. +.|.+ ++...|.|+.|+|||||.+|..+
T Consensus 284 ~f~--~~~~~d~~~~~adVV~inn-~~f~~---~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 284 SFV--DNNRVAELIPQCDVILVNN-FLFDE---DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CST--TCHHHHHHGGGCSEEEECC-TTCCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred chh--hccccccccccceEEEEec-ccCch---HHHHHHHHHHHhcCCCcEEEEec
Confidence 100 0111 1 3467777654 33333 47889999999999999999876
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.60 E-value=1.1e-08 Score=91.28 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-C-CEEEEecccCCcccHHHHHhc-CcchhhhhccccCCCCCCCcceeEeccccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAPDTLSIIFDR-GLIGMYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~-v~v~~V~p~d~s~~l~~a~eR-glig~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
.+.++|||+|||+|.++.+|+++ + .. ++-.|.+..++.+... .+..+.+|. +-+.| ..|+++.+++||++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~---~~v~Dlp~vi~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~~vLh~~ 152 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIK---GINFDLPQVIENAPPLSGIEHVGGDM---FASVP-QGDAMILKAVCHNW 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHTTCCCCTTEEEEECCT---TTCCC-CEEEEEEESSGGGS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCe---EEEecchhhhhccCCCCCeEEecCCc---ccccc-cceEEEEehhhhhC
Confidence 56789999999999999999874 3 22 2233444322211111 111122332 34556 44999999999998
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
++ .+...+|+.+.+.|+|||.++|.|.
T Consensus 153 ~d-e~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 153 SD-EKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 75 3467899999999999999999873
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=3.5e-08 Score=89.73 Aligned_cols=127 Identities=17% Similarity=0.401 Sum_probs=84.0
Q ss_pred CCeEEEeCCcchHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhc----Cc--ch-hhhhccccCCCCC-CCcceeEec-
Q 021643 167 VRNVMDMNASYGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDR----GL--IG-MYHDWCESFNTYP-RTYDLLHSS- 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eR----gl--ig-~~~d~ce~~lpfP-~sFDlVh~~- 235 (309)
..+|||+|||+|..+..|+. .+- ..|+++|.+ .++..|.+. |+ +. ...|+ +.+++ +.||+|+|+
T Consensus 109 ~~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsNP 183 (274)
T d2b3ta1 109 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FSALAGQQFAMIVSNP 183 (274)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TGGGTTCCEEEEEECC
T ss_pred ccceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeeccc---ccccCCCceeEEEecc
Confidence 35799999999999998876 332 256778887 566666543 33 11 22343 34567 799999997
Q ss_pred -cc-----------ccccccc---------CCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee-eee---
Q 021643 236 -FL-----------LSDVTQR---------CDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST-NIY--- 290 (309)
Q Consensus 236 -~v-----------~~~~~~~---------~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~-~~~--- 290 (309)
++ ..|.+.. ....+++.+..+.|+|||.+++--..+..+.+.++++...|.. .+.
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDY 263 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEECC
Confidence 21 1111110 1245789999999999999999644444567888888888863 333
Q ss_pred --cceEEEEE
Q 021643 291 --HDQFLVGK 298 (309)
Q Consensus 291 --~e~~li~~ 298 (309)
.++++++|
T Consensus 264 ~g~~R~v~~r 273 (274)
T d2b3ta1 264 GDNERVTLGR 273 (274)
T ss_dssp TSSEEEEEEE
T ss_pred CCCceEEEEe
Confidence 56777764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.54 E-value=6.9e-08 Score=82.67 Aligned_cols=120 Identities=16% Similarity=0.176 Sum_probs=76.0
Q ss_pred hcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchH----HHHHhhcC---CCEEEEecccCCc-ccHHHHHhcCc-
Q 021643 141 FNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG----FAAALIDQ---PLWVMNVVPIDAP-DTLSIIFDRGL- 211 (309)
Q Consensus 141 F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~----faa~L~~~---~v~v~~V~p~d~s-~~l~~a~eRgl- 211 (309)
|-.|...|..... .+. +.++.-+|+++|||+|. +|..|.+. ..+-..|.+.|.+ ..++.|.+ |.
T Consensus 5 FFRd~~~f~~L~~--~~~----~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y 77 (193)
T d1af7a2 5 FFREAHHFPILAE--HAR----RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIY 77 (193)
T ss_dssp TTTTTTHHHHHHH--HHH----HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEE
T ss_pred CcCCcHHHHHHHH--HHh----ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-Ccc
Confidence 4456667755443 221 12344579999999996 55555431 1122468888887 57776652 21
Q ss_pred --------ch------------------------------hhhhccccCCCCC-CCcceeEeccccccccccCCHHHHHH
Q 021643 212 --------IG------------------------------MYHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAV 252 (309)
Q Consensus 212 --------ig------------------------------~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~ 252 (309)
.. ..++.. ...+.+ +.||+|+|.+||.++.. ....+++.
T Consensus 78 ~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~fDvI~CRNVLiYf~~-~~~~~vl~ 155 (193)
T d1af7a2 78 RLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLL-EKQYNVPGPFDAIFCRNVMIYFDK-TTQEDILR 155 (193)
T ss_dssp EGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTT-CSSCCCCCCEEEEEECSSGGGSCH-HHHHHHHH
T ss_pred cHHHHhhhhHHHHhhceeecCCCccceeehHHHHHHHHHHhhhhcc-ccccCCCCCccEEEeehhHHhcCH-HHHHHHHH
Confidence 00 001100 112344 89999999999999864 34578999
Q ss_pred HHhhcccCCeEEEEEeC
Q 021643 253 EMDRILRPGGYVLVQDT 269 (309)
Q Consensus 253 Em~RVLRPGG~lii~D~ 269 (309)
.+++.|+|||++++-..
T Consensus 156 ~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 156 RFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp HHGGGEEEEEEEEECTT
T ss_pred HHHHHhCCCcEEEEecC
Confidence 99999999999998643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.53 E-value=4e-08 Score=86.81 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=61.2
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC--c--ch-hhhhccccCCCCC--CC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG--L--IG-MYHDWCESFNTYP--RT 228 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg--l--ig-~~~d~ce~~lpfP--~s 228 (309)
++.+.+..+ .+|||+|||+|.+++.|+.....| ..++.. +....|.++. . +. ...| ....+| +.
T Consensus 63 l~~L~l~~g--~~VLdIG~GsGy~ta~La~l~~~V---~aiE~~~~~~~~A~~~~~~~~nv~~~~~d---~~~g~~~~~p 134 (224)
T d1vbfa_ 63 LDELDLHKG--QKVLEIGTGIGYYTALIAEIVDKV---VSVEINEKMYNYASKLLSYYNNIKLILGD---GTLGYEEEKP 134 (224)
T ss_dssp HHHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEE---EEEESCHHHHHHHHHHHTTCSSEEEEESC---GGGCCGGGCC
T ss_pred HHHhhhccc--ceEEEecCCCCHHHHHHHHHhccc---ccccccHHHHHHHHHHHhcccccccccCc---hhhcchhhhh
Confidence 344555544 589999999999999998865444 444544 3555554431 1 11 1122 134455 77
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
||.|++.....++++ ++.+.|||||++++-
T Consensus 135 fD~Iiv~~a~~~ip~---------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 135 YDRVVVWATAPTLLC---------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEEEESSBBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred HHHHHhhcchhhhhH---------HHHHhcCCCCEEEEE
Confidence 999999988876652 345779999999884
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.37 E-value=9.4e-08 Score=88.04 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=72.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc------hhhhhccccCCCCC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI------GMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli------g~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
..+|||++||+|+|+.+++..+ ..|+.+|.+ .+++.+.+. |+. +...++.+ .++.. ++||+|++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~-~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR-RLEKEGERFDLVVL 221 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH-HHHHTTCCEEEEEE
T ss_pred CCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh-hhHhhhcCCCEEEE
Confidence 3689999999999999987532 467788887 566666543 441 11112111 23334 79999998
Q ss_pred cc-cccccc-----ccCCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHcCCCee
Q 021643 235 SF-LLSDVT-----QRCDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHSLQWST 287 (309)
Q Consensus 235 ~~-v~~~~~-----~~~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~l~W~~ 287 (309)
+- ++..-. ......+++..+.++|||||.++++... +..+.+.+.+..-..+.
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~ 286 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLL 286 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence 52 111100 0112346888999999999999997542 34555555555444443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=1.6e-07 Score=82.90 Aligned_cols=97 Identities=14% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-C-CEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEeccccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-P-LWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~-v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
.+.++|||+|||+|.++..|+++ + .. ++-.|.+..++.+.+.. .....+|+ +.+.|. .|+++..++++++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~vi~~~~~~~r~~~~~~d~---~~~~P~-ad~~~l~~vlh~~ 152 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIK---GINFDLPHVIEDAPSYPGVEHVGGDM---FVSIPK-ADAVFMKWICHDW 152 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSE---EEEEECTTTTTTCCCCTTEEEEECCT---TTCCCC-CSCEECSSSSTTS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCe---EEEcccHHhhhhcccCCceEEecccc---cccCCC-cceEEEEEEeecC
Confidence 44789999999999999999874 2 22 22234433322222111 22233443 345662 4667778889888
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
.+ .+...+|+++.+.|+|||.++|.|.
T Consensus 153 ~d-~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 153 SD-EHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CH-HHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CH-HHHHHHHHHHHHhcCCCceEEEEEE
Confidence 64 3567899999999999999999763
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.4e-06 Score=76.23 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-c-cHHHHHhcCc-------chhhhhccccCC-CC-CCCcce
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-D-TLSIIFDRGL-------IGMYHDWCESFN-TY-PRTYDL 231 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~-~l~~a~eRgl-------ig~~~d~ce~~l-pf-P~sFDl 231 (309)
+.++||++|||+|..+.+++.. +..+..+...... + +.+...+-|+ .|...+.-+..+ .. +++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 3579999999999999999862 3444444433222 1 2233333344 121111000111 12 389999
Q ss_pred eEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH---------------HHH-HHHHHHHHcCCCeeeee--cce
Q 021643 232 LHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL---------------EMI-NKLKPVLHSLQWSTNIY--HDQ 293 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~---------------~~~-~~i~~l~~~l~W~~~~~--~e~ 293 (309)
|+... +.......+..+.+.|||||.+++.|-. ..+ +-.+.|.+.-+|...+. .+.
T Consensus 139 ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdG 212 (219)
T d2avda1 139 AVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG 212 (219)
T ss_dssp EEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTC
T ss_pred EEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCe
Confidence 98752 2234667889999999999999997531 112 22455567888887665 678
Q ss_pred EEEEEe
Q 021643 294 FLVGKK 299 (309)
Q Consensus 294 ~li~~K 299 (309)
++|++|
T Consensus 213 l~ia~K 218 (219)
T d2avda1 213 LTLAFK 218 (219)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999998
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=7.9e-07 Score=79.67 Aligned_cols=134 Identities=12% Similarity=0.143 Sum_probs=80.6
Q ss_pred hhcccchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHH----hcCcchh
Q 021643 140 AFNKDTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIF----DRGLIGM 214 (309)
Q Consensus 140 ~F~~d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~----eRglig~ 214 (309)
.|.......+.++.. . +.. ..+|||+|||+|.|+..++.++. ..|.++|.+ ++++.+. ..|+...
T Consensus 89 ~f~~~~~~er~ri~~-~-----~~~--g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~ 158 (260)
T d2frna1 89 MFSPANVKERVRMAK-V-----AKP--DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDR 158 (260)
T ss_dssp CCCGGGHHHHHHHHH-H-----CCT--TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTT
T ss_pred cEecCCHHHHHHHHh-h-----cCC--ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCce
Confidence 455555555555543 1 122 35899999999999998887653 135566665 3444443 3344221
Q ss_pred hhhccccCCCCC--CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC-------HHHHHHHHHHHHcCCC
Q 021643 215 YHDWCESFNTYP--RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT-------LEMINKLKPVLHSLQW 285 (309)
Q Consensus 215 ~~d~ce~~lpfP--~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~-------~~~~~~i~~l~~~l~W 285 (309)
..-.+.....|+ +.||.|+++.-. .-.+++.+..++|+|||++.+-+. .+..+.++++++....
T Consensus 159 v~~~~~D~~~~~~~~~~D~Ii~~~p~-------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~ 231 (260)
T d2frna1 159 MSAYNMDNRDFPGENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 231 (260)
T ss_dssp EEEECSCTTTCCCCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred EEEEEcchHHhccCCCCCEEEECCCC-------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 111111122333 889999865221 113478889999999999876432 2246677888888777
Q ss_pred eeeee
Q 021643 286 STNIY 290 (309)
Q Consensus 286 ~~~~~ 290 (309)
++...
T Consensus 232 ~v~~~ 236 (260)
T d2frna1 232 DVEKL 236 (260)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 76543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.13 E-value=4.4e-07 Score=80.52 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=64.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC-cchhhhhccccCCCCCCCcceeEecccccccc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG-LIGMYHDWCESFNTYPRTYDLLHSSFLLSDVT 242 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg-lig~~~d~ce~~lpfP~sFDlVh~~~v~~~~~ 242 (309)
.+.++|||+|||+|.++..++++ +- +.++-.|.++.++.+.... +..+-+|. +-+. ..+|+++.+++||+|.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dlp~vi~~~~~~~rv~~~~gD~---f~~~-p~aD~~~l~~vLHdw~ 152 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPK--LKCIVFDRPQVVENLSGSNNLTYVGGDM---FTSI-PNADAVLLKYILHNWT 152 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTT--CEEEEEECHHHHTTCCCBTTEEEEECCT---TTCC-CCCSEEEEESCGGGSC
T ss_pred cCceEEEEecCCccHHHHHHHHhCCC--CeEEEecCHHHHHhCcccCceEEEecCc---ccCC-CCCcEEEEEeecccCC
Confidence 45678999999999999999874 31 1223334443222211111 11122332 2233 4679999999999997
Q ss_pred ccCCHHHHHHHHhhcccCC---eEEEEEeC
Q 021643 243 QRCDIADVAVEMDRILRPG---GYVLVQDT 269 (309)
Q Consensus 243 ~~~~~~~~L~Em~RVLRPG---G~lii~D~ 269 (309)
+ .+-.++|+.+.+.|+|| |.++|.|.
T Consensus 153 d-~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 153 D-KDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp H-HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred h-HHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 5 34568999999999999 77888763
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=6.8e-07 Score=82.17 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=62.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcchhh-------hhccccCCCCC-CCcceeEe
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIGMY-------HDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig~~-------~d~ce~~lpfP-~sFDlVh~ 234 (309)
.+|||++||+|+|+.+++..+.. .|+.+|.+ .+++.+.+ .|+.... -++.+ .++.. ++||+|++
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~-~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME-KLQKKGEKFDIVVL 223 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH-HHHHTTCCEEEEEE
T ss_pred CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhH-HHHhccCCCCchhc
Confidence 58999999999999999887642 45666776 45555544 3442111 11111 13334 79999998
Q ss_pred ccc-ccccc-c----cCCHHHHHHHHhhcccCCeEEEEEeC
Q 021643 235 SFL-LSDVT-Q----RCDIADVAVEMDRILRPGGYVLVQDT 269 (309)
Q Consensus 235 ~~v-~~~~~-~----~~~~~~~L~Em~RVLRPGG~lii~D~ 269 (309)
+-- +..-. . ..+..+++....++|||||++++...
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 521 11100 0 01245678889999999999999754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.10 E-value=9.4e-07 Score=77.29 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=57.6
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCc-ccHHHHHh----cCcc--h-hhhhccccCCCCC-
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAP-DTLSIIFD----RGLI--G-MYHDWCESFNTYP- 226 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s-~~l~~a~e----Rgli--g-~~~d~ce~~lpfP- 226 (309)
++.+.+..+ .+|||+|||+|.+++.|+.. +..|.. ++.. +..+.+.+ .|+. . ...| ....+|
T Consensus 71 l~~L~l~~g--~~VLeIGsGsGY~taila~l~g~~V~~---ie~~~~l~~~a~~~l~~~g~~nv~~~~gd---~~~g~~~ 142 (215)
T d1jg1a_ 71 LEIANLKPG--MNILEVGTGSGWNAALISEIVKTDVYT---IERIPELVEFAKRNLERAGVKNVHVILGD---GSKGFPP 142 (215)
T ss_dssp HHHHTCCTT--CCEEEECCTTSHHHHHHHHHHCSCEEE---EESCHHHHHHHHHHHHHTTCCSEEEEESC---GGGCCGG
T ss_pred HHhhccCcc--ceEEEecCCCChhHHHHHHhhCceeEE---EeccHHHHHHHHHHHHHcCCceeEEEECc---cccCCcc
Confidence 344555554 58999999999999988863 322222 2332 23343333 3431 1 1222 123344
Q ss_pred -CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 227 -RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 227 -~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+.||.|++.....+.++ . +..-|||||++++-
T Consensus 143 ~~pfD~Iiv~~a~~~ip~------~---l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPE------P---LIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSCCH------H---HHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCH------H---HHHhcCCCCEEEEE
Confidence 89999999988887653 2 23469999999874
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.08 E-value=6.7e-07 Score=73.34 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=58.6
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccccCCCCC-CCcceeEeccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce~~lpfP-~sFDlVh~~~v 237 (309)
..+|||+|||+|+++...+.++.. .|..+|.. ++++.+.+. |+. ..+..-+...+..+ +.||+|++.==
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 358999999999999877777752 56667776 455444332 331 12222223345566 89999987521
Q ss_pred cccccccCCHHHHHHHH--hhcccCCeEEEEEe
Q 021643 238 LSDVTQRCDIADVAVEM--DRILRPGGYVLVQD 268 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D 268 (309)
+. .......|..+ .++|+|||.+++..
T Consensus 93 y~----~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA----KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11 01123344433 47899999999864
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.08 E-value=2.1e-06 Score=75.19 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=54.8
Q ss_pred CCeEEEeCCcchHHHHHhhcC----CC-EEEEecccCCc-ccHHHHHhc---------C---cchhhhhccccCCCCC-C
Q 021643 167 VRNVMDMNASYGGFAAALIDQ----PL-WVMNVVPIDAP-DTLSIIFDR---------G---LIGMYHDWCESFNTYP-R 227 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~----~v-~v~~V~p~d~s-~~l~~a~eR---------g---lig~~~d~ce~~lpfP-~ 227 (309)
..+|||+|||+|.+++.|+.. ++ ....|..++.. +.+..+.++ + +.-...| +. ....+ +
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d-~~-~~~~~~~ 158 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD-GR-KGYPPNA 158 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC-GG-GCCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecc-cc-ccccccc
Confidence 468999999999999888752 21 00123344444 345555432 1 1111122 11 12223 8
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.||.|++...+.+.++ .+.+.|||||++++-
T Consensus 159 ~fD~Iiv~~a~~~~p~---------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTPT---------ELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSSCCH---------HHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechhchH---------HHHHhcCCCcEEEEE
Confidence 9999999988876652 356799999999884
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.07 E-value=1.8e-06 Score=78.06 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=86.3
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhh
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMY 215 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~ 215 (309)
+++.+...+.+ +... ....+|+|+|||+|..+..++..+- ..|.++|.+ .+++.|.+. |+. ...
T Consensus 94 eTE~lv~~~~~-~~~~-----~~~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~ 165 (271)
T d1nv8a_ 94 ETEELVELALE-LIRK-----YGIKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVR 165 (271)
T ss_dssp THHHHHHHHHH-HHHH-----HTCCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred hhhhhhhhhhh-hhcc-----ccccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence 34555555554 3322 2245799999999998888776442 246677777 566666543 431 112
Q ss_pred -hhccccCCCCC-CCcceeEec--cc-----c----cccc------ccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHH
Q 021643 216 -HDWCESFNTYP-RTYDLLHSS--FL-----L----SDVT------QRCDIADVAVEMDRILRPGGYVLVQDTLEMINKL 276 (309)
Q Consensus 216 -~d~ce~~lpfP-~sFDlVh~~--~v-----~----~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i 276 (309)
.+|.+ .++.. +.||+|+|+ ++ + .|.+ ..+++..+-.=+.+.|+|||++++--..+.-+++
T Consensus 166 ~~~~~~-~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~~v 244 (271)
T d1nv8a_ 166 KGEFLE-PFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEEL 244 (271)
T ss_dssp ESSTTG-GGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHH
T ss_pred eccccc-ccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHHHH
Confidence 23321 12222 689999997 11 1 1111 1112222222256889999999987555555677
Q ss_pred HHHHHcCCCeeeee-cceEEEEEeC
Q 021643 277 KPVLHSLQWSTNIY-HDQFLVGKKG 300 (309)
Q Consensus 277 ~~l~~~l~W~~~~~-~e~~li~~K~ 300 (309)
+++++...|-.... .+++++.+|+
T Consensus 245 ~~l~~~~g~~kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 245 KKIVSDTVFLKDSAGKYRFLLLNRR 269 (271)
T ss_dssp TTTSTTCEEEECTTSSEEEEEEECC
T ss_pred HHHHHhCCEEeccCCCcEEEEEEEc
Confidence 78887766633222 6899999985
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.06 E-value=7.6e-07 Score=76.55 Aligned_cols=114 Identities=16% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc---------chhhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL---------IGMYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl---------ig~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
...+||++||+|+++.+++++-.. ..|.++|.. .+++.+.++.- .+.+.+.-+....++ ++||.|...
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~D 102 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD 102 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeec
Confidence 458999999999999998874211 357777877 68998887632 111111111123566 899999877
Q ss_pred ccccccc------ccCCHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHH
Q 021643 236 FLLSDVT------QRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLH 281 (309)
Q Consensus 236 ~v~~~~~------~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~ 281 (309)
..++..+ ......+.|.++.++|+|||.+++...... -..++.+.+
T Consensus 103 lGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~ 155 (192)
T d1m6ya2 103 LGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFR 155 (192)
T ss_dssp CSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHh
Confidence 5554321 112367899999999999999988765442 233455543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=4.7e-06 Score=72.28 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=65.3
Q ss_pred CCCeEEEeCCcchHHHHHhhcC---CCEEEEecccCCc-ccHHHH----HhcCcc-------hhhhhcccc-CCCCC-CC
Q 021643 166 SVRNVMDMNASYGGFAAALIDQ---PLWVMNVVPIDAP-DTLSII----FDRGLI-------GMYHDWCES-FNTYP-RT 228 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~---~v~v~~V~p~d~s-~~l~~a----~eRgli-------g~~~d~ce~-~lpfP-~s 228 (309)
+.++||++|||+|..+.+|+.. +..+..+ |.. ++.+.+ ...|+. |...+.-.. .-.+. ++
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~si---d~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTM---EMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEE---ESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEE---eccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 3579999999999999998862 3444333 333 333333 334541 222221000 11356 88
Q ss_pred cceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe-----CHHHHHHHHHHHHcCCCeee
Q 021643 229 YDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD-----TLEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 229 FDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D-----~~~~~~~i~~l~~~l~W~~~ 288 (309)
||+|+....-..+. ....+.|..|.|||||.+++.| ..+.++.+++ .=+|+..
T Consensus 133 ~D~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~ 190 (214)
T d2cl5a1 133 LDMVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECT 190 (214)
T ss_dssp EEEEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEE
T ss_pred cceeeecccccccc----cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeeh
Confidence 99998763222211 2235788899999999877755 2455555553 3455544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.94 E-value=5.4e-06 Score=76.17 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=63.6
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcch-----hhhhccccCCCC---C-CCcceeE
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIG-----MYHDWCESFNTY---P-RTYDLLH 233 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig-----~~~d~ce~~lpf---P-~sFDlVh 233 (309)
++|||+.||+|+|+.+++..+.. .|+.+|.+ ..++.+.+ .|+.. +..| +...+.. . +.||+|+
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d-~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMD-VFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESC-HHHHHHHHHHTTCCEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEcc-HHHHHHHHHhhcCCCCEEE
Confidence 58999999999999887776541 24455555 34544443 34411 1111 1011211 2 6899999
Q ss_pred ec-cccccc-ccc----CCHHHHHHHHhhcccCCeEEEEEeCH------HHHHHHHHHHHc
Q 021643 234 SS-FLLSDV-TQR----CDIADVAVEMDRILRPGGYVLVQDTL------EMINKLKPVLHS 282 (309)
Q Consensus 234 ~~-~v~~~~-~~~----~~~~~~L~Em~RVLRPGG~lii~D~~------~~~~~i~~l~~~ 282 (309)
+. =.|..- ... .+..+++....++|+|||.++++... +....+.+.+..
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~ 283 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 283 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 85 111100 000 12456888899999999999997542 344445554443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.93 E-value=2.6e-05 Score=66.71 Aligned_cols=116 Identities=8% Similarity=0.109 Sum_probs=67.3
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-chh-hhhccccCCCCCCCcceeEecccccccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IGM-YHDWCESFNTYPRTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig~-~~d~ce~~lpfP~sFDlVh~~~v~~~~~~~ 244 (309)
.+|||+|||+|.++..++.++. ..|+++|.+ .++..+.+.-- .+. ..-.+.....++..||+|+++==+......
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~ 125 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKH 125 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTT
T ss_pred CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccccc
Confidence 5899999999999988877764 245667776 57777765421 110 000111234556889999998544322222
Q ss_pred CCHHHHHHHHhhcccCCeEE--EEEeCHHHHHHHHHHHHcCCCeeee
Q 021643 245 CDIADVAVEMDRILRPGGYV--LVQDTLEMINKLKPVLHSLQWSTNI 289 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~l--ii~D~~~~~~~i~~l~~~l~W~~~~ 289 (309)
.+.. ++. +.+.+++.+ +-........-++++++...|....
T Consensus 126 ~d~~-~l~---~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 126 ADRP-FLL---KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTHH-HHH---HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccHH-HHH---HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 2322 222 223334433 3334555666777888888887544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.84 E-value=3.3e-05 Score=67.66 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=76.9
Q ss_pred CCCeEEEeCCcchHHHHHhhc---CCCEEEEecccCCc-c-cHHHHHhcCcc-------hhhhhccccC--CC-CCCCcc
Q 021643 166 SVRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAP-D-TLSIIFDRGLI-------GMYHDWCESF--NT-YPRTYD 230 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~---~~v~v~~V~p~d~s-~-~l~~a~eRgli-------g~~~d~ce~~--lp-fP~sFD 230 (309)
+.++||.+|+++|..+.+|+. .+..+..+...+.. + ..+...+-|+. |...+.-... .. ..++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 357999999999998888874 23455454443322 1 23333344541 1111110000 11 237899
Q ss_pred eeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCH--------------H----HHHHHH----HHHHcCCCeee
Q 021643 231 LLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTL--------------E----MINKLK----PVLHSLQWSTN 288 (309)
Q Consensus 231 lVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~--------------~----~~~~i~----~l~~~l~W~~~ 288 (309)
+|+... +.......+..+.+.|||||.+++.+-. . ..+.++ .+...=++++.
T Consensus 139 ~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~ 212 (227)
T d1susa1 139 FIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEIC 212 (227)
T ss_dssp EEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCE
T ss_pred EEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 998652 2234667899999999999999997531 1 122232 33455677766
Q ss_pred ee--cceEEEEEeC
Q 021643 289 IY--HDQFLVGKKG 300 (309)
Q Consensus 289 ~~--~e~~li~~K~ 300 (309)
+. .+.++|++|-
T Consensus 213 llPigDGl~i~~K~ 226 (227)
T d1susa1 213 MLPVGDGITICRRI 226 (227)
T ss_dssp EECSTTCEEEECBC
T ss_pred EeecCCeeEEEEEC
Confidence 55 7889999883
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.68 E-value=1.2e-05 Score=67.15 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh----cCcch-hhhhcccc---CCCCC-CCcceeEeccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD----RGLIG-MYHDWCES---FNTYP-RTYDLLHSSFL 237 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e----Rglig-~~~d~ce~---~lpfP-~sFDlVh~~~v 237 (309)
.+|||+|||+|.++...+.++..+ +.+|.+ .+++.+.+ -|+.. +....+.. ....+ .+||+|+++==
T Consensus 43 ~~vLDl~~G~G~~~i~a~~~ga~v---v~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 43 GRFLDPFAGSGAVGLEAASEGWEA---VLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTCEE---EEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeccccchhhhhhhhccchh---hhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 489999999999999888888643 456776 45555433 23311 11110111 12334 78999987521
Q ss_pred cccccccCCHHHHHHHH--hhcccCCeEEEEEeCH
Q 021643 238 LSDVTQRCDIADVAVEM--DRILRPGGYVLVQDTL 270 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D~~ 270 (309)
+. -+....+.++ ...|+|||++++....
T Consensus 120 Y~-----~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 120 YA-----MDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TT-----SCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cc-----cCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 11 1122334443 3589999999986543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.66 E-value=3e-05 Score=66.69 Aligned_cols=63 Identities=19% Similarity=0.149 Sum_probs=43.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc-ch-hhhhccccCCCCCCCcceeEecc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL-IG-MYHDWCESFNTYPRTYDLLHSSF 236 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl-ig-~~~d~ce~~lpfP~sFDlVh~~~ 236 (309)
.+|||+|||+|.++..++..+.. .|+.+|.+ .+++.+.+..- +. ...| ...+++.||+|+++=
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi~NP 115 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWIMNP 115 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEEECC
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEEeCc
Confidence 68999999999998777776642 46677776 57777776532 11 1122 223468899999973
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.63 E-value=2.5e-05 Score=71.70 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccchhhhhc-cc---cCC---CCC-CCcceeE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIGMYHDW-CE---SFN---TYP-RTYDLLH 233 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig~~~d~-ce---~~l---pfP-~sFDlVh 233 (309)
..+|||+.||+|+|+.+++..+. .|+.+|.+ .+++.|.+. |+...-+.+ ++ .++ ... +.||+|+
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 46899999999999999998875 45667888 577776653 331100111 11 011 123 7899999
Q ss_pred ec---ccccc----ccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 234 SS---FLLSD----VTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 234 ~~---~v~~~----~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
+. +.-.. +.-...+..++..+.++|+|||.+++.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 84 21110 110112344666788899999975554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.61 E-value=0.00027 Score=62.38 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=86.3
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchHHHH--HhhcCCCEEEEecccCCc----ccHHH-HHhcCc--chh
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGGFAA--ALIDQPLWVMNVVPIDAP----DTLSI-IFDRGL--IGM 214 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~faa--~L~~~~v~v~~V~p~d~s----~~l~~-a~eRgl--ig~ 214 (309)
..+.|.+++.+...-..-++.....+++|+|+|.|-=+. ++..... .++-+|.. .-|+. +.+=|| +.+
T Consensus 48 ~~~i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n~~i 124 (239)
T d1xdza_ 48 KKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTF 124 (239)
T ss_dssp HHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCCcEE
Confidence 345666665542210111222234689999999984333 3333232 33444443 23333 333466 223
Q ss_pred hhhccccC---CCCCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeC---HHHHHHHHHHHHcCCCeee
Q 021643 215 YHDWCESF---NTYPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDT---LEMINKLKPVLHSLQWSTN 288 (309)
Q Consensus 215 ~~d~ce~~---lpfP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~---~~~~~~i~~l~~~l~W~~~ 288 (309)
++.-.|.. ..+...||+|.|.. |. .+..++.=....|+|||.+++--. .+.+++.++..+.+.++..
T Consensus 125 ~~~R~E~~~~~~~~~~~~D~v~sRA-va------~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~ 197 (239)
T d1xdza_ 125 CHDRAETFGQRKDVRESYDIVTARA-VA------RLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELE 197 (239)
T ss_dssp EESCHHHHTTCTTTTTCEEEEEEEC-CS------CHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEE
T ss_pred EeehhhhccccccccccceEEEEhh-hh------CHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEE
Confidence 44433432 23447899999864 33 356688889999999999999744 4456666667777777653
Q ss_pred ee----------cceEEEEEeCcCC
Q 021643 289 IY----------HDQFLVGKKGFWR 303 (309)
Q Consensus 289 ~~----------~e~~li~~K~~w~ 303 (309)
.. ...+++.+|.-=.
T Consensus 198 ~v~~~~lp~~~~~r~lv~i~K~~~~ 222 (239)
T d1xdza_ 198 NIHSFKLPIEESDRNIMVIRKIKNT 222 (239)
T ss_dssp EEEEEECTTTCCEEEEEEEEECSCC
T ss_pred EEEEEeCCCCCCCEEEEEEEECCCC
Confidence 21 2357888876433
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.38 E-value=2.5e-05 Score=65.54 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=52.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcc-cHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccc--
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPD-TLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVT-- 242 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~-~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~-- 242 (309)
..+|||.|||+|+|...+.++.....++.++|..+ .+..+. ...-...+. ....+ ..||+|+++--+....
T Consensus 20 ~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~--~~~~~~~~~---~~~~~~~~fd~ii~npP~~~~~~~ 94 (223)
T d2ih2a1 20 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--WAEGILADF---LLWEPGEAFDLILGNPPYGIVGEA 94 (223)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--TEEEEESCG---GGCCCSSCEEEEEECCCCCCBSCT
T ss_pred cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc--cceeeeeeh---hccccccccceecccCcccccccc
Confidence 46899999999999988875211111223333321 111111 110011221 12234 8999999885443211
Q ss_pred -----------------------ccCC-HHHHHHHHhhcccCCeEEEEEe
Q 021643 243 -----------------------QRCD-IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 243 -----------------------~~~~-~~~~L~Em~RVLRPGG~lii~D 268 (309)
...+ -..++....+.|+|||++++--
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 95 SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 0111 1245677889999999987754
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00062 Score=58.64 Aligned_cols=127 Identities=10% Similarity=0.079 Sum_probs=72.5
Q ss_pred cchhHHHHHHHHHHhccCCCCCCCCeEEEeCCcchH--HHHHhhcCCCEEEEecccCCc----ccHH-HHHhcCc--chh
Q 021643 144 DTTHWYALVSDVYVGGLAINWSSVRNVMDMNASYGG--FAAALIDQPLWVMNVVPIDAP----DTLS-IIFDRGL--IGM 214 (309)
Q Consensus 144 d~~~W~~~v~~~y~~~l~i~~~~~r~VLD~GCG~G~--faa~L~~~~v~v~~V~p~d~s----~~l~-~a~eRgl--ig~ 214 (309)
....|.+++.+...-..-+. ..+|+|+|+|.|- .-.++..... .++-+|.. .-++ ++.+=|+ +.+
T Consensus 46 ~~~~~~rHi~DSl~~~~~~~---~~~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv~v 119 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVAPYLQ---GERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEP 119 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCC---SSEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEE
T ss_pred HHHHHHHHhcchHhhhhhhc---CCceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCcceee
Confidence 44667766665322111122 2489999999984 3333333333 33444443 2233 3444466 234
Q ss_pred hhhccccCCCCC-CCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 215 YHDWCESFNTYP-RTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 215 ~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
+++-.| ...+ .+||+|.|.. |. .+..++.-+.+.++|||.+++--.....++++.+- -.|+.
T Consensus 120 ~~~R~E--~~~~~~~fD~V~sRA-~~------~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~ 182 (207)
T d1jsxa_ 120 VQSRVE--EFPSEPPFDGVISRA-FA------SLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV 182 (207)
T ss_dssp EECCTT--TSCCCSCEEEEECSC-SS------SHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred eccchh--hhccccccceehhhh-hc------CHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence 444333 2234 7899988754 43 35668888899999999999986655555665543 35654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.26 E-value=7.8e-05 Score=67.18 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=58.8
Q ss_pred CCeEEEeCCcchHHHHHhhc----CCCEEEEecccCCc-ccHHHHHhc----Cc-ch-hhhhccccCCCCC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALID----QPLWVMNVVPIDAP-DTLSIIFDR----GL-IG-MYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~----~~v~v~~V~p~d~s-~~l~~a~eR----gl-ig-~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
..+|||.+||+|+|+.++.+ ....-..+.++|.. .++..|... +. .. ...+ .....+ ..||+|++
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQD---GLANLLVDPVDVVIS 194 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESC---TTSCCCCCCEEEEEE
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccc---ccccccccccccccc
Confidence 46899999999999887753 22223456667765 455555432 21 11 1122 234456 89999999
Q ss_pred cccccccc--------------ccCC-HHHHHHHHhhcccCCeEEEEEe
Q 021643 235 SFLLSDVT--------------QRCD-IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 235 ~~v~~~~~--------------~~~~-~~~~L~Em~RVLRPGG~lii~D 268 (309)
+==+.... ...+ -.-++..+.+.|+|||++++--
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 83332110 0001 1235788999999999876654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=3.7e-05 Score=64.95 Aligned_cols=131 Identities=14% Similarity=0.191 Sum_probs=65.2
Q ss_pred CCeEEEeCCcchHHHHHhhcC----C-CEEEEecccCCcccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccc
Q 021643 167 VRNVMDMNASYGGFAAALIDQ----P-LWVMNVVPIDAPDTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSD 240 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~----~-v~v~~V~p~d~s~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~ 240 (309)
..+|||+||+.|+|..++.++ + +...++.|...-+... .-.|-+......-....-+. +.||+|.|.....-
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~--~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~ 100 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVD--FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNM 100 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEE--EEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCce--EeecccccchhhhhhhhhccCcceeEEEecccchh
Confidence 468999999999999988762 1 2333333332111000 00111110000000011123 67999999866532
Q ss_pred cccc--------CCHHHHHHHHhhcccCCeEEEEE--e---CHHHHHHHHHHHHcCCCeeee-----ecceEEEEEe
Q 021643 241 VTQR--------CDIADVAVEMDRILRPGGYVLVQ--D---TLEMINKLKPVLHSLQWSTNI-----YHDQFLVGKK 299 (309)
Q Consensus 241 ~~~~--------~~~~~~L~Em~RVLRPGG~lii~--D---~~~~~~~i~~l~~~l~W~~~~-----~~e~~li~~K 299 (309)
-.+. .-....|.=+.++|||||.|++- + ..+.+..++..-+.++.-.-. ..|..+||+.
T Consensus 101 sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 101 SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 1100 01234555567999999999985 2 233444444433333221100 0688888864
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00026 Score=64.56 Aligned_cols=133 Identities=14% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcC------c-----ch-hhhhccccCCC-CCCCc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRG------L-----IG-MYHDWCESFNT-YPRTY 229 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRg------l-----ig-~~~d~ce~~lp-fP~sF 229 (309)
...++||.+|.|.|+.+..+.+.+ + ..|+.++.. ..++.+.+.- . +. ...|. ..++. .++.|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da-~~~l~~~~~~y 152 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-RAYLERTEERY 152 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-HHHHHHCCCCE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCc--ceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH-HHHhhhcCCcc
Confidence 446899999999999999988753 3 233444443 3555554431 1 00 11121 11222 23789
Q ss_pred ceeEeccccccccc---cC--CHHHHHHHHhhcccCCeEEEEEe------CHHHHHHHHHHHHcCCCeeeee--------
Q 021643 230 DLLHSSFLLSDVTQ---RC--DIADVAVEMDRILRPGGYVLVQD------TLEMINKLKPVLHSLQWSTNIY-------- 290 (309)
Q Consensus 230 DlVh~~~v~~~~~~---~~--~~~~~L~Em~RVLRPGG~lii~D------~~~~~~~i~~l~~~l~W~~~~~-------- 290 (309)
|+|+.... ..+.. .. --.++++.+.|.|+|||.++..- ..++...+.+.+++.=-.+...
T Consensus 153 DvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~~V~~y~~~vPs~~ 231 (312)
T d1uira_ 153 DVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFF 231 (312)
T ss_dssp EEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGT
T ss_pred cEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCceEEEEEeeeCCcC
Confidence 99996532 11110 00 12568999999999999998842 2345566655554443333322
Q ss_pred -cceEEEEEeCc
Q 021643 291 -HDQFLVGKKGF 301 (309)
Q Consensus 291 -~e~~li~~K~~ 301 (309)
.-.++++.|..
T Consensus 232 ~~w~f~~aS~~~ 243 (312)
T d1uira_ 232 LNFGFLLASDAF 243 (312)
T ss_dssp EEEEEEEEESSS
T ss_pred CCCEeEEEeCCC
Confidence 23477888754
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00023 Score=59.55 Aligned_cols=94 Identities=10% Similarity=0.090 Sum_probs=56.2
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHh---c-Cc--chh-hhhccccCCCCC-CCcceeEecccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFD---R-GL--IGM-YHDWCESFNTYP-RTYDLLHSSFLL 238 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~e---R-gl--ig~-~~d~ce~~lpfP-~sFDlVh~~~v~ 238 (309)
.+|||++||+|.++...+.+|.. .|+.+|.+ ++++.+.+ + +. ..+ ..| +..++.-. ..||+|++.=
T Consensus 45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d-~~~~l~~~~~~fDlIf~DP-- 119 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSN-AMSFLAQKGTPHNIVFVDP-- 119 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC-HHHHHSSCCCCEEEEEECC--
T ss_pred hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeec-ccccccccccccCEEEEcC--
Confidence 47999999999999888888763 34555655 34444332 2 22 111 112 11234445 8999998862
Q ss_pred ccccccCCHHHHHHHHh--hcccCCeEEEEEe
Q 021643 239 SDVTQRCDIADVAVEMD--RILRPGGYVLVQD 268 (309)
Q Consensus 239 ~~~~~~~~~~~~L~Em~--RVLRPGG~lii~D 268 (309)
.+. ....+.++.-+. .+|+|+|.+++.-
T Consensus 120 -PY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 120 -PFR-RGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp -SSS-TTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred -ccc-cchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 122 123444555444 4799999999853
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.04 E-value=0.00015 Score=60.86 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=56.2
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccc---hhhhhccccCCCC---C-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLI---GMYHDWCESFNTY---P-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----gli---g~~~d~ce~~lpf---P-~sFDlVh~ 234 (309)
..+|||+.||+|+++...+.+|.. .|+.+|.+ .++..+.+. +.. ..+..-+...+.. . ..||+|++
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 358999999999999988888753 34455555 344444332 321 1111111112221 3 67999986
Q ss_pred ccccccccccCCHHHHHHHHh--hcccCCeEEEEE
Q 021643 235 SFLLSDVTQRCDIADVAVEMD--RILRPGGYVLVQ 267 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~--RVLRPGG~lii~ 267 (309)
.= .+. .......|..+. .+|+|+|++++.
T Consensus 120 DP---PY~-~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 120 DP---PYA-KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CC---CGG-GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ch---hhh-hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 51 111 234566676664 479999998874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0024 Score=55.93 Aligned_cols=121 Identities=8% Similarity=-0.059 Sum_probs=72.1
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch---hhh-hcccc----CCCCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG---MYH-DWCES----FNTYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig---~~~-d~ce~----~lpfP-~sFD 230 (309)
....+|||+|||+|-.+..|+.+-. -..++++|.+ .+++.|.+. ++.. ..+ ++-+. ..... ++||
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 4457899999999999988876410 1256777877 577766543 3311 111 11111 11234 6899
Q ss_pred eeEecccccccc----------------c------c----------CCHHHHHHHHhhcccCCeEEEEEeC-HHHHHHHH
Q 021643 231 LLHSSFLLSDVT----------------Q------R----------CDIADVAVEMDRILRPGGYVLVQDT-LEMINKLK 277 (309)
Q Consensus 231 lVh~~~v~~~~~----------------~------~----------~~~~~~L~Em~RVLRPGG~lii~D~-~~~~~~i~ 277 (309)
+|+|+==+..-. . . .-..+++.|..+.++..|++..--. .+-++++.
T Consensus 139 ~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~ 218 (250)
T d2h00a1 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLK 218 (250)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHH
T ss_pred EEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHH
Confidence 999972222100 0 0 0145677888899999998864332 34566777
Q ss_pred HHHHcCCCe
Q 021643 278 PVLHSLQWS 286 (309)
Q Consensus 278 ~l~~~l~W~ 286 (309)
++++.....
T Consensus 219 ~~L~~~g~~ 227 (250)
T d2h00a1 219 EELRIQGVP 227 (250)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHcCCC
Confidence 777777664
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.75 E-value=0.00088 Score=59.64 Aligned_cols=111 Identities=14% Similarity=0.056 Sum_probs=62.0
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecc----cCCc--ccHHHHHhcCcchhhhhccccCC-CCC-CCcceeEeccccc
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVP----IDAP--DTLSIIFDRGLIGMYHDWCESFN-TYP-RTYDLLHSSFLLS 239 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p----~d~s--~~l~~a~eRglig~~~d~ce~~l-pfP-~sFDlVh~~~v~~ 239 (309)
.+|+|+|||.|+|+.+++.+. .++.+.+ .|.+ .+....+..+++. + -.+... -.+ ...|+|+|...-+
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~-~--~~~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVR-L--QSGVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEE-E--ECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCcccccccccccc-c--hhhhhHHhcCCCcCCEEEeeCCCC
Confidence 479999999999999998764 1233333 3332 1111111111211 1 011112 234 8899999985433
Q ss_pred ccc---ccCCHHHHHHHHhhcccCCeEEEEEe----CHHHHHHHHHHHHc
Q 021643 240 DVT---QRCDIADVAVEMDRILRPGGYVLVQD----TLEMINKLKPVLHS 282 (309)
Q Consensus 240 ~~~---~~~~~~~~L~Em~RVLRPGG~lii~D----~~~~~~~i~~l~~~ 282 (309)
.-. +.....++|.=+.+.|+|||-|++-- ..+++++++.+-+.
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~ 193 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRK 193 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHH
T ss_pred CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHH
Confidence 110 00012245556668899999998863 46677777776543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.72 E-value=0.00096 Score=59.46 Aligned_cols=100 Identities=16% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCcccHHHHHhcC-cc---------------hh-hhhccccCCCCCC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAPDTLSIIFDRG-LI---------------GM-YHDWCESFNTYPR 227 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s~~l~~a~eRg-li---------------g~-~~d~ce~~lpfP~ 227 (309)
.+.++||-+|+|.|+.+..+.+.+..-+.++-+|. ..++++.+-. +. .+ ..|. ...+.=.+
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~-~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da-~~~l~~~~ 148 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDE-DVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG-FEFIKNNR 148 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCH-HHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH-HHHHHHCC
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCH-HHHHHHHHhhhhccchhhhhhccCCCCceEEEChH-HHHHhccC
Confidence 45689999999999999998887643223333322 3555554311 00 00 1110 00111027
Q ss_pred CcceeEeccccccccccCC--HHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~ 267 (309)
+||+|+... +........ -..++..+.|.|+|||.++..
T Consensus 149 ~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 149 GFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp CEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 899999753 332211111 156899999999999999885
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.00097 Score=60.32 Aligned_cols=102 Identities=8% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCcccHHHHHhcCc----------ch-hhhhccccCCC-CCCCcce
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAPDTLSIIFDRGL----------IG-MYHDWCESFNT-YPRTYDL 231 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s~~l~~a~eRgl----------ig-~~~d~ce~~lp-fP~sFDl 231 (309)
...++||=+|.|.|+.+..+.+.+ +.-+.++-+|. ..++.+.+-.. .. ...|. ..++- .++.||+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp-~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da-~~~l~~~~~~yDv 165 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDG-LVIEAARKYLKQTSCGFDDPRAEIVIANG-AEYVRKFKNEFDV 165 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCH-HHHHHHHHHCHHHHGGGGCTTEEEEESCH-HHHGGGCSSCEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCH-HHHHHHHHHHHhhcccccCCCcEEEhhhH-HHHHhcCCCCCCE
Confidence 446899999999999999998864 43233333332 24444443211 00 11111 11222 2388999
Q ss_pred eEeccccccccccC--CHHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D 268 (309)
|++...-....... --..++..+.|.|+|||.++..-
T Consensus 166 Ii~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 99863221111111 12578999999999999999853
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.025 Score=50.61 Aligned_cols=114 Identities=20% Similarity=0.229 Sum_probs=67.0
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc--ccHHHHHhcCcc--hhhhhccccC---CCCC-CCcceeEeccc
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP--DTLSIIFDRGLI--GMYHDWCESF---NTYP-RTYDLLHSSFL 237 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s--~~l~~a~eRgli--g~~~d~ce~~---lpfP-~sFDlVh~~~v 237 (309)
+..+|||+-||+|.|+..|+++...|..|.....+ .+...+...|+. ..++.-.+.. .+.. ..||+|+..
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD-- 289 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD-- 289 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC--
T ss_pred CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC--
Confidence 35689999999999999999876555444333222 222333334541 1111111112 2333 779998654
Q ss_pred cccccccCCHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCee
Q 021643 238 LSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWST 287 (309)
Q Consensus 238 ~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~~ 287 (309)
+.+.+..+++.++.+ ++|.-.++|+=++.. ...++.|.+ -.|+.
T Consensus 290 ----PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l 334 (358)
T d1uwva2 290 ----PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTI 334 (358)
T ss_dssp ----CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEE
T ss_pred ----CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeE
Confidence 455566667777766 489999999855554 344555543 34554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.08 E-value=0.0036 Score=52.49 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=75.3
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc------chhhhhccccCCCCC-CC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL------IGMYHDWCESFNTYP-RT 228 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl------ig~~~d~ce~~lpfP-~s 228 (309)
++.|.+..+ ..++|..+|.||.+.++.+++. .|.++|.. .++..+.++-. .+.+.+.-+....+. ..
T Consensus 11 l~~l~~~~g--~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 11 LDLLAVRPG--GVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHHHTCCTT--CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HHhcCCCCC--CEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence 333444443 5899999999999999998764 35566665 56777765432 122222111112345 78
Q ss_pred cceeEecccccccc--cc----CCHHHHHHHHhhcccCCeEEEEEeCHHH-HHHHHHHHHcCCCe
Q 021643 229 YDLLHSSFLLSDVT--QR----CDIADVAVEMDRILRPGGYVLVQDTLEM-INKLKPVLHSLQWS 286 (309)
Q Consensus 229 FDlVh~~~v~~~~~--~~----~~~~~~L~Em~RVLRPGG~lii~D~~~~-~~~i~~l~~~l~W~ 286 (309)
+|.|....-++..+ +. ......|.....+|+|||.+++...... -..++...+.-.++
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK 150 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence 99999876665432 11 1244567777899999999888765432 23455555443343
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.76 E-value=0.0043 Score=56.45 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=57.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCC-CEEEEecccCCc-ccHHHHHhcCc--ch---------hhhhccccCCCC-CCCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQP-LWVMNVVPIDAP-DTLSIIFDRGL--IG---------MYHDWCESFNTY-PRTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~-v~v~~V~p~d~s-~~l~~a~eRgl--ig---------~~~d~ce~~lpf-P~sFD 230 (309)
...++||-+|-|.|+.+..+.+.+ +. .|+-++.. ..++.+.+--. .+ .+.|. -.++-- ++.||
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~--~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da-~~~l~~~~~~yD 181 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVE--KVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG-FEFLKNHKNEFD 181 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCC--EEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH-HHHHHHCTTCEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcc--eEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH-HHHHHhCCCCCC
Confidence 456899999999999999999854 43 33444443 34555543210 01 01110 011212 38899
Q ss_pred eeEeccccccccccC--CHHHHHHHHhhcccCCeEEEEEe
Q 021643 231 LLHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 231 lVh~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|+....-. ..... --..++..+.|.|+|||.++..-
T Consensus 182 vII~D~~dp-~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 182 VIITDSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCCCC-CCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 999863221 11111 12468999999999999999963
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0022 Score=57.47 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC------c----ch-hhhhccccCCC-CCCCcce
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG------L----IG-MYHDWCESFNT-YPRTYDL 231 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg------l----ig-~~~d~ce~~lp-fP~sFDl 231 (309)
...++||-+|-|.|+.+..+.+. ++.-+.++-+|. ..++++.+-- + .. ...| +-.++- -+++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~-~Vv~~a~~~~~~~~~~~~d~rv~i~~~D-a~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDE-DVIQVSKKFLPGMAIGYSSSKLTLHVGD-GFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGGCTTEEEEESC-HHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCH-HHHHHHHhhchhhccccCCCCceEEEcc-HHHHHhcCCCCCCE
Confidence 44689999999999999999986 343333333332 2444444321 1 00 1111 111222 2388999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D 268 (309)
|++.. +........ -..+++.+.|.|+|||.+++.-
T Consensus 155 Ii~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 155 IITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 99863 322111111 2357999999999999999863
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=95.64 E-value=0.0064 Score=53.98 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC-----c-----ch-hhhhccccCCCCC-CCcce
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG-----L-----IG-MYHDWCESFNTYP-RTYDL 231 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg-----l-----ig-~~~d~ce~~lpfP-~sFDl 231 (309)
...++||-+|-|.|+.++.+.++ ++.-+.++-+|.. .++++.+-. . +. ...| +-.++--. +.||+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~-Vi~~a~~~~~~~~~~~~d~r~~i~~~D-~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK-VIEYSKKFLPSIAGKLDDPRVDVQVDD-GFMHIAKSENQYDV 151 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH-HHHHHHHHCHHHHTTTTSTTEEEEESC-SHHHHHTCCSCEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHH-HHHHHHHhChhhcccccCCCeEEEech-HHHHHhhcCCCCCE
Confidence 34679999999999999999885 4433334444332 344443321 1 00 1111 11122223 88999
Q ss_pred eEeccccccccccCC--HHHHHHHHhhcccCCeEEEEEe
Q 021643 232 LHSSFLLSDVTQRCD--IADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 232 Vh~~~v~~~~~~~~~--~~~~L~Em~RVLRPGG~lii~D 268 (309)
|+... ......... -..+++.+.|.|+|||.++..-
T Consensus 152 Ii~D~-~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 152 IMVDS-TEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEESC-SSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcC-CCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 98763 222111111 2468999999999999999863
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.57 E-value=0.0062 Score=54.53 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC-CCEEEEecccCCcccHHHHHhcC------c-----chhhhhccccCC-CCC-CCcc
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ-PLWVMNVVPIDAPDTLSIIFDRG------L-----IGMYHDWCESFN-TYP-RTYD 230 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~-~v~v~~V~p~d~s~~l~~a~eRg------l-----ig~~~d~ce~~l-pfP-~sFD 230 (309)
.+.++||=+|-|.|+.+..+.+. ++..+.++-+|. ..++++.+-. + .-.+.|-- .++ -.+ ++||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~-~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~-~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDK-MVVDVSKQFFPDVAIGYEDPRVNLVIGDGV-AFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCH-HHHHHHHHHCHHHHGGGGSTTEEEEESCHH-HHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCH-HHHHHHHHhchhhhccccCCCcEEEEccHH-HHHhhccccCcc
Confidence 45689999999999999999886 443333333332 2444443321 1 00111211 122 345 7999
Q ss_pred eeEeccccccccccC--CHHHHHHHHhhcccCCeEEEEEe
Q 021643 231 LLHSSFLLSDVTQRC--DIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 231 lVh~~~v~~~~~~~~--~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+|+... +....... --..+++.+.|.|+|||.++..-
T Consensus 157 vIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 157 AVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 999752 22111111 12568999999999999999963
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=95.36 E-value=0.0078 Score=49.77 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=53.8
Q ss_pred CeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc----Ccch----hhhhccccCC--CCC-CCcceeEec
Q 021643 168 RNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR----GLIG----MYHDWCESFN--TYP-RTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR----glig----~~~d~ce~~l--pfP-~sFDlVh~~ 235 (309)
.+|||+-||||.++..-+.+|.. .++-+|.+ +.+..+.+. +... ...+-+...+ ... ..||+|++.
T Consensus 45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 47999999999999999998863 34555655 344333322 2211 0001011122 333 679999875
Q ss_pred cccccccccCCHHHHHHHH--hhcccCCeEEEEEe
Q 021643 236 FLLSDVTQRCDIADVAVEM--DRILRPGGYVLVQD 268 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em--~RVLRPGG~lii~D 268 (309)
= .+. ....+.+|.-+ ..+|+|+|++++--
T Consensus 123 P---PY~-~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 P---PFH-FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp C---CSS-SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred h---hHh-hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 1 111 11133444444 35899999999853
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.15 E-value=0.037 Score=46.18 Aligned_cols=41 Identities=12% Similarity=-0.130 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcccCCeEEEEEeCHHHHHHHHHHHHcCCCee
Q 021643 247 IADVAVEMDRILRPGGYVLVQDTLEMINKLKPVLHSLQWST 287 (309)
Q Consensus 247 ~~~~L~Em~RVLRPGG~lii~D~~~~~~~i~~l~~~l~W~~ 287 (309)
+.+.+.|+.|+|+|||.+++.........+........|..
T Consensus 53 ~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~ 93 (256)
T d1g60a_ 53 TYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIF 93 (256)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhhhccccCcccccccCchhhhhhhhhhhccccee
Confidence 45688999999999999988777776666666666666653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.038 Score=48.77 Aligned_cols=121 Identities=14% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc----ccH-HHHHhcCcc---hhhhhccccCCCCCCCcceeEec-
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP----DTL-SIIFDRGLI---GMYHDWCESFNTYPRTYDLLHSS- 235 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s----~~l-~~a~eRgli---g~~~d~ce~~lpfP~sFDlVh~~- 235 (309)
....+|||++||.||=+.+|++..-. ..|.++|.+ ..+ +....-|+. ....+........++.||.|.+.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred cccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 44568999999999977777652111 124455554 223 333333541 11112100011223789999853
Q ss_pred -----ccccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHc-CCCe
Q 021643 236 -----FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHS-LQWS 286 (309)
Q Consensus 236 -----~v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~-l~W~ 286 (309)
+.+..-+ ...+ =.++|....+.|||||+++.+.. .|.-+.|+.++++ -.++
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~ 253 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 253 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcE
Confidence 3342211 0011 13567788889999999999853 2334455555543 3444
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=94.46 E-value=0.017 Score=53.51 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=54.6
Q ss_pred CCCCeEEEeCCcchHHHHHhhcC----CCE--------EEEecccCCc-ccHHHHHh----cCcchhh-hhccccCC-CC
Q 021643 165 SSVRNVMDMNASYGGFAAALIDQ----PLW--------VMNVVPIDAP-DTLSIIFD----RGLIGMY-HDWCESFN-TY 225 (309)
Q Consensus 165 ~~~r~VLD~GCG~G~faa~L~~~----~v~--------v~~V~p~d~s-~~l~~a~e----Rglig~~-~d~ce~~l-pf 225 (309)
....+|+|-.||+|+|.....++ ... -.++.+.+.. .+..++.- +|..... .-.++..+ ..
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~ 240 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 240 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh
Confidence 34578999999999998766541 100 0012222322 23333321 2321000 00111122 34
Q ss_pred C-CCcceeEecccccc--cc-----------ccCC-HHHHHHHHhhcccCCeEEEEEeCH
Q 021643 226 P-RTYDLLHSSFLLSD--VT-----------QRCD-IADVAVEMDRILRPGGYVLVQDTL 270 (309)
Q Consensus 226 P-~sFDlVh~~~v~~~--~~-----------~~~~-~~~~L~Em~RVLRPGG~lii~D~~ 270 (309)
+ ..||+|+++==|.. .. ...+ -..++.-+.+.|+|||.+.+.-+.
T Consensus 241 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 241 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 5 89999999733311 00 0011 124888999999999987776543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.42 E-value=0.038 Score=47.71 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCeEEEeCCcchHHHHHhhc------CCCEEE--EecccCCcccHHHHHhcCc---chhhhhccccCCCCC-CCcceeEe
Q 021643 167 VRNVMDMNASYGGFAAALID------QPLWVM--NVVPIDAPDTLSIIFDRGL---IGMYHDWCESFNTYP-RTYDLLHS 234 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~------~~v~v~--~V~p~d~s~~l~~a~eRgl---ig~~~d~ce~~lpfP-~sFDlVh~ 234 (309)
..+||.+|++.|+.+..+++ .+..+. ++.+..... ..-....+ .|...+ .+...-+. ..||+|+.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~--~~~~~~~I~~i~gDs~~-~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI--PASDMENITLHQGDCSD-LTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC--CGGGCTTEEEEECCSSC-SGGGGGGSSSCSSEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh--hhccccceeeeeccccc-HHHHHHHHhcCCCEEEE
Confidence 46899999999986655442 222333 332221110 00001111 121111 11111233 56899887
Q ss_pred ccccccccccCCHHHHHHHHhhcccCCeEEEEEeCHH
Q 021643 235 SFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 235 ~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
... |+..+ .+ .-.+....|+|||++|+-|...
T Consensus 158 D~~-H~~~~--v~--~~~~~~~lLk~GG~iIveD~i~ 189 (232)
T d2bm8a1 158 DNA-HANTF--NI--MKWAVDHLLEEGDYFIIEDMIP 189 (232)
T ss_dssp ESS-CSSHH--HH--HHHHHHHTCCTTCEEEECSCHH
T ss_pred cCC-cchHH--HH--HHHHHhcccCcCCEEEEEcCCc
Confidence 654 32211 12 2225678999999999999753
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.99 E-value=0.095 Score=46.80 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=60.6
Q ss_pred CCeEEEeCCcchHHHHHhhc---CCCEEEEecccCCc-c---cHHHHHhc-Ccch--hhhhccccCCCCC-CCcceeEec
Q 021643 167 VRNVMDMNASYGGFAAALID---QPLWVMNVVPIDAP-D---TLSIIFDR-GLIG--MYHDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~---~~v~v~~V~p~d~s-~---~l~~a~eR-glig--~~~d~ce~~lpfP-~sFDlVh~~ 235 (309)
..+|||++||.|+=+..|+. ... .+...|.+ . .+....+| |... ..++- ....+.. ..||.|.+.
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~~~~~---~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d-~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLMRNDG---VIYAFDVDENRLRETRLNLSRLGVLNVILFHSS-SLHIGELNVEFDKILLD 192 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHHTCCSEEEESSC-GGGGGGGCCCEEEEEEE
T ss_pred cceeeecccchhhhhHhhhhhccccc---ceeeeccCHHHHHHHHHHHHHHHhhcccccccc-ccccccccccccEEEEc
Confidence 45899999999996555543 332 24455554 2 23322232 4421 11111 1123333 889999762
Q ss_pred ------ccccccc------ccCC-------HHHHHHHHhhcccCCeEEEEEeC----HHHHHHHHHHHHcCC
Q 021643 236 ------FLLSDVT------QRCD-------IADVAVEMDRILRPGGYVLVQDT----LEMINKLKPVLHSLQ 284 (309)
Q Consensus 236 ------~v~~~~~------~~~~-------~~~~L~Em~RVLRPGG~lii~D~----~~~~~~i~~l~~~l~ 284 (309)
+++..-+ ...+ -.++|....+.|||||++|.+.. .+--+.|+.++++..
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 2232111 0001 13567888899999999999853 233344555555443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.88 E-value=0.023 Score=47.37 Aligned_cols=103 Identities=16% Similarity=-0.024 Sum_probs=59.0
Q ss_pred CCCCCCCCeEEEeCCcchH-HHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhh----hccc--cCCCCCCCcce
Q 021643 161 AINWSSVRNVMDMNASYGG-FAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYH----DWCE--SFNTYPRTYDL 231 (309)
Q Consensus 161 ~i~~~~~r~VLD~GCG~G~-faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~----d~ce--~~lpfP~sFDl 231 (309)
+++++ .+||.+|||..+ .++.+++ .+.. .|..+|.+ +.++.+.+.|...++. ++.+ ..++-+..+|+
T Consensus 22 ~v~~G--~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 22 GVGPG--STVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TCCTT--CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCC--CEEEEECcCHHHHHHHHHHHhhccc--ceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence 45544 589999999844 5566554 4431 23344554 5788898888632211 1100 01222356788
Q ss_pred eEecccc------ccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 232 LHSSFLL------SDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 232 Vh~~~v~------~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
++-..-+ ++..........|.++-+.+||||.+++.
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 7743211 11111112346899999999999999886
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.76 E-value=0.074 Score=48.86 Aligned_cols=45 Identities=27% Similarity=0.376 Sum_probs=30.5
Q ss_pred CCCC-CCcceeEeccccccccc-------------------c-----------CCHHHHHHHHhhcccCCeEEEEE
Q 021643 223 NTYP-RTYDLLHSSFLLSDVTQ-------------------R-----------CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 223 lpfP-~sFDlVh~~~v~~~~~~-------------------~-----------~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
--|| +|.|++||+..+|.+.. . .|+..+|.==.+-|+|||.+++.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3489 99999999999876431 0 02233444444556799999985
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=91.36 E-value=0.11 Score=44.62 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=32.5
Q ss_pred HhccCCCCCCCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcC
Q 021643 157 VGGLAINWSSVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRG 210 (309)
Q Consensus 157 ~~~l~i~~~~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRg 210 (309)
++.+.+. ...+||++|||+|.++..|++.+..+ .+++.. ++.+...++.
T Consensus 14 v~~~~~~--~~d~VlEIGpG~G~LT~~Ll~~~~~v---~avE~D~~l~~~l~~~~ 63 (235)
T d1qama_ 14 MTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFV---TAIEIDHKLCKTTENKL 63 (235)
T ss_dssp HTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEE---EEECSCHHHHHHHHHHT
T ss_pred HHhcCCC--CCCeEEEECCCchHHHHHHHhCcCce---EEEeeccchHHHHHHHh
Confidence 3344443 35689999999999999999876543 344444 4555555543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.18 E-value=0.07 Score=42.63 Aligned_cols=91 Identities=14% Similarity=0.057 Sum_probs=52.3
Q ss_pred CCeEEEeCCc-chHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhh--hhccccCCCCCCCcceeEeccccccc
Q 021643 167 VRNVMDMNAS-YGGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY--HDWCESFNTYPRTYDLLHSSFLLSDV 241 (309)
Q Consensus 167 ~r~VLD~GCG-~G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~--~d~ce~~lpfP~sFDlVh~~~v~~~~ 241 (309)
..+||-+|+| .|.++..+++ .+..++ .++.+ +.++.+++-|...++ .+-.+......+.||.|+....-.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi---~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~-- 102 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETY---VISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL-- 102 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEE---EEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS--
T ss_pred CCEEEEECCCCcchhHHHHhhhcccccc---ccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC--
Confidence 3589999999 4667776665 455443 33444 467888877752222 111111112337799876421111
Q ss_pred cccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 242 TQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 242 ~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+ . .+....++|||||.+++-
T Consensus 103 ~~---~--~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 103 TD---I--DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp TT---C--CTTTGGGGEEEEEEEEEC
T ss_pred cc---c--hHHHHHHHhhccceEEEe
Confidence 10 0 245678999999999885
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.45 Score=41.64 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.8
Q ss_pred CCCeEEEeCCcchHHHHHhhc
Q 021643 166 SVRNVMDMNASYGGFAAALID 186 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~ 186 (309)
...+|||++||.|+-+.+|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~ 114 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAA 114 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHH
Confidence 345899999999997776664
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.80 E-value=0.16 Score=42.66 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=30.2
Q ss_pred CCC-CCcceeEecc----cccccccc----CCHHHHHHHHhhcccCCeEEEEE
Q 021643 224 TYP-RTYDLLHSSF----LLSDVTQR----CDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 224 pfP-~sFDlVh~~~----v~~~~~~~----~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.+| +|+|+|+++= .+..+... ..+...+.|+.|+|||||.+++.
T Consensus 18 ~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 18 KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 467 8999998761 11111111 12567899999999999999885
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=88.24 E-value=0.36 Score=45.53 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=28.6
Q ss_pred CCcceeEecccccc----------ccccCCH-HHHHHHHhhcccCCeEEEEEeCHH
Q 021643 227 RTYDLLHSSFLLSD----------VTQRCDI-ADVAVEMDRILRPGGYVLVQDTLE 271 (309)
Q Consensus 227 ~sFDlVh~~~v~~~----------~~~~~~~-~~~L~Em~RVLRPGG~lii~D~~~ 271 (309)
..||+|+++==|.. ....... ..+++-+.+.|+|||++.+.-+..
T Consensus 255 ~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 255 PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 67999998732211 0011111 247888999999999987765443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=88.14 E-value=0.43 Score=37.38 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCCCCCCeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhhh-h--------cccc-CCCCCC
Q 021643 161 AINWSSVRNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMYH-D--------WCES-FNTYPR 227 (309)
Q Consensus 161 ~i~~~~~r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~~-d--------~ce~-~lpfP~ 227 (309)
++..+ .+||=+|||. |.+++.+++ .+.. |..+|.+ +.++.+++-|....+. + ..+. ...+++
T Consensus 23 ~~~~g--~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 23 GVQLG--TTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 97 (170)
T ss_dssp TCCTT--CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCC--CEEEEEcccccchhhHhhHhhhccc---ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence 34443 4789999995 666666665 5543 4444555 4678888777521110 0 0000 112345
Q ss_pred CcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 228 TYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 228 sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
.||+|+-.. .-...+.+..+.|||||.+++.
T Consensus 98 g~D~vid~~---------g~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 98 LPNVTIDCS---------GNEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp CCSEEEECS---------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred CCceeeecC---------CChHHHHHHHHHHhcCCceEEE
Confidence 678775321 1245788899999999999986
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.56 E-value=0.15 Score=46.73 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=56.3
Q ss_pred CCeEEEeCCcchHHHHHh-hcCCCEEEEecccCCc-ccHHHHHhc----Ccc------------------hhhhhccccC
Q 021643 167 VRNVMDMNASYGGFAAAL-IDQPLWVMNVVPIDAP-DTLSIIFDR----GLI------------------GMYHDWCESF 222 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L-~~~~v~v~~V~p~d~s-~~l~~a~eR----gli------------------g~~~d~ce~~ 222 (309)
..+|||+.||+|.++... .+.++ -.|..+|.+ +.++.+.+. |+. ....|. ...
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da-~~~ 122 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA-NRL 122 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH-HHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh-hhh
Confidence 357999999999999854 44453 246667776 466665533 110 000110 000
Q ss_pred CC-CCCCcceeEeccccccccccCCHHHHHHHHhhcccCCeEEEEEe
Q 021643 223 NT-YPRTYDLLHSSFLLSDVTQRCDIADVAVEMDRILRPGGYVLVQD 268 (309)
Q Consensus 223 lp-fP~sFDlVh~~~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~D 268 (309)
+. -.+.||+|...- | .....+|.-.-|-+|.||++.++-
T Consensus 123 ~~~~~~~fDvIDiDP-f------Gs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 123 MAERHRYFHFIDLDP-F------GSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHHSTTCEEEEEECC-S------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhhcCcCCcccCCC-C------CCcHHHHHHHHHHhccCCEEEEEe
Confidence 11 125699998653 1 223458999999999999999973
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=87.26 E-value=0.08 Score=45.87 Aligned_cols=65 Identities=11% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCc----chhh-hhccccCCCCC-CCcceeEec
Q 021643 166 SVRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGL----IGMY-HDWCESFNTYP-RTYDLLHSS 235 (309)
Q Consensus 166 ~~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRgl----ig~~-~d~ce~~lpfP-~sFDlVh~~ 235 (309)
...+||++|||+|.++..|++.+..+. +++.. ++.+...++.- +..+ +|. ....++ ..++.|+++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~---aIE~D~~l~~~l~~~~~~~~n~~ii~~D~--l~~~~~~~~~~~vv~N 100 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISKQVT---SIELDSHLFNLSSEKLKLNTRVTLIHQDI--LQFQFPNKQRYKIVGN 100 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEE---ESSSSCSSSSSSSCTTTTCSEEEECCSCC--TTTTCCCSSEEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHhhcCcee---Eeeecccchhhhhhhhhhccchhhhhhhh--hccccccceeeeEeee
Confidence 346899999999999999998765443 33333 23333333321 2222 221 124566 677777766
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=85.40 E-value=0.24 Score=39.70 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=53.6
Q ss_pred CeEEEeCCcc-hHHHHHhhc-CCCEEEEecccCCc-ccHHHHHhcCcchhh-------hhccc--cCCCCCCCcceeEec
Q 021643 168 RNVMDMNASY-GGFAAALID-QPLWVMNVVPIDAP-DTLSIIFDRGLIGMY-------HDWCE--SFNTYPRTYDLLHSS 235 (309)
Q Consensus 168 r~VLD~GCG~-G~faa~L~~-~~v~v~~V~p~d~s-~~l~~a~eRglig~~-------~d~ce--~~lpfP~sFDlVh~~ 235 (309)
.+||-+|||. |.++..+++ .+.. .|..++.+ +.++.+.+-|...++ .++.+ ..++.++.||+|+-.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~ 107 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA 107 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CEEEEECCCccchhheecccccccc--cccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence 5899999985 677777776 4541 33344444 467788777742111 01101 123344679988632
Q ss_pred cccccccccCCHHHHHHHHhhcccCCeEEEEE
Q 021643 236 FLLSDVTQRCDIADVAVEMDRILRPGGYVLVQ 267 (309)
Q Consensus 236 ~v~~~~~~~~~~~~~L~Em~RVLRPGG~lii~ 267 (309)
. .. ...+.+..+.|||||.+++.
T Consensus 108 v-----G~----~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 108 T-----GD----SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp S-----SC----TTHHHHHHHHEEEEEEEEEC
T ss_pred C-----Cc----hhHHHHHHHHhcCCCEEEEE
Confidence 1 11 22688889999999998875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=81.97 E-value=0.62 Score=40.15 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEEecccCCc-ccHHHHHhc
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMNVVPIDAP-DTLSIIFDR 209 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eR 209 (309)
...||.+|||+|.++..|++++..+ ..++.. ...+...++
T Consensus 22 ~d~vlEIGpG~G~LT~~Ll~~~~~v---~aiEiD~~l~~~L~~~ 62 (252)
T d1qyra_ 22 GQAMVEIGPGLAALTEPVGERLDQL---TVIELDRDLAARLQTH 62 (252)
T ss_dssp TCCEEEECCTTTTTHHHHHTTCSCE---EEECCCHHHHHHHHTC
T ss_pred CCEEEEECCCchHHHHHHHccCCce---EEEEeccchhHHHHHH
Confidence 4689999999999999999976533 334443 344444443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.65 E-value=1.5 Score=33.96 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=64.8
Q ss_pred eEEEeCCcc-h-HHHHHhhcCCCEEEEecccCCc-ccHHHHHhcCcchhhhhccccCCCCC-CCcceeEecccccccccc
Q 021643 169 NVMDMNASY-G-GFAAALIDQPLWVMNVVPIDAP-DTLSIIFDRGLIGMYHDWCESFNTYP-RTYDLLHSSFLLSDVTQR 244 (309)
Q Consensus 169 ~VLD~GCG~-G-~faa~L~~~~v~v~~V~p~d~s-~~l~~a~eRglig~~~d~ce~~lpfP-~sFDlVh~~~v~~~~~~~ 244 (309)
+|+=+|||. | ++|..|.+.+.- ..|...|.+ +.++.+.+.|.+....+. ..... ...|+|+... + .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~-~~I~~~D~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~dlIila~-----p-~ 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFK-GKIYGYDINPESISKAVDLGIIDEGTTS---IAKVEDFSPDFVMLSS-----P-V 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCC-SEEEEECSCHHHHHHHHHTTSCSEEESC---GGGGGGTCCSEEEECS-----C-H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCC-eEEEEEECChHHHHHHHHhhcchhhhhh---hhhhhccccccccccC-----C-c
Confidence 577799997 4 577788876631 246667776 688899999875432221 12222 5678886532 1 1
Q ss_pred CCHHHHHHHHhhcccCCeEEEEEeC--HHHHHHHHHHHH
Q 021643 245 CDIADVAVEMDRILRPGGYVLVQDT--LEMINKLKPVLH 281 (309)
Q Consensus 245 ~~~~~~L~Em~RVLRPGG~lii~D~--~~~~~~i~~l~~ 281 (309)
.....++.|+...++++-.++-.-. ....+.+++...
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~ 111 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG 111 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence 2366789999999998866654333 445666666543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.78 E-value=1.2 Score=38.85 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCeEEEeCCcchHHHHHhhcCCCEEEE
Q 021643 167 VRNVMDMNASYGGFAAALIDQPLWVMN 193 (309)
Q Consensus 167 ~r~VLD~GCG~G~faa~L~~~~v~v~~ 193 (309)
..+||++|+|+|.++..|++++..+..
T Consensus 22 ~d~VlEIGPG~G~LT~~Ll~~~~~v~a 48 (278)
T d1zq9a1 22 TDVVLEVGPGTGNMTVKLLEKAKKVVA 48 (278)
T ss_dssp TCEEEEECCTTSTTHHHHHHHSSEEEE
T ss_pred CCEEEEECCCchHHHHHHHhcCCcEEE
Confidence 468999999999999999987654443
|