Citrus Sinensis ID: 021650

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31

MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPAIRGYSA

ccccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccEEccccccccHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc

ccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccHHccccccccEEEEEEccccccccccEEcccccccccccccccccccEEHHHHHccccccccHHHHHHHHHHHHHHHccccccccccEEEEEccccccHcHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccc

MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACesgsifegvmpkdldIYVTTasnaqessfgtycpgmdpspppeyitclgdlysvawmedsethnlkrETISQQYQAVKERtsnfnnynsgshvmeygntsvkseklylyqgfdpastnfppnklqpdqmgvvnqRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVIlfgpdkgsrILNSvrarglplvddwQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETseaacsgnelrqwhpairgysa

MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERtsnfnnynsgSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPDQMGVVNQRDADLLFMWHMYKNaaegsekksEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAacsgnelrqwhpairgysa

****PYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTA**********************YITCLGDLYSVAWME***********************************MEYGNTSVKSEKLYLYQGFD*****************VVNQRDADLLFMWHMYKN**********************KHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQA***************************

**NMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGF***********************DADLLFMWHM**************LKQITETMRHRKHLDASIDMIGVILFGPDK**********RGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHP**RGY**

***MPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNK****QMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELR***********

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		309	2.2.26 [Sep-21-2011]
P49045		495	Vacuolar-processing enzym	yes	no	1.0	0.624	0.732	1e-139
Q39044		486	Vacuolar-processing enzym	yes	no	0.993	0.631	0.730	1e-137
P49042		497	Vacuolar-processing enzym	N/A	no	1.0	0.621	0.722	1e-137
P49046		475	Legumain OS=Canavalia ens	N/A	no	1.0	0.650	0.712	1e-135
O24326		493	Vacuolar-processing enzym	N/A	no	1.0	0.626	0.709	1e-129
O24325		484	Vacuolar-processing enzym	N/A	no	0.990	0.632	0.565	1e-101
P49043		494	Vacuolar-processing enzym	no	no	0.990	0.619	0.570	8e-97
Q39119		494	Vacuolar-processing enzym	no	no	0.993	0.621	0.573	8e-96
P49044		493	Vacuolar-processing enzym	N/A	no	0.990	0.620	0.552	2e-94
P49047		478	Vacuolar-processing enzym	no	no	0.990	0.640	0.564	3e-94

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function desciption

 Score =  495 bits (1274), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 227/310 (73%), Positives = 267/310 (86%), Gaps = 1/310 (0%)

Query: 1   MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQ 60
           MPNMPY+YAM+FIDVLKKKHA+ SYK MVIYVEACESGS+FEG+MPKDL+IYVTTASNAQ
Sbjct: 186 MPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIYVTTASNAQ 245

Query: 61  ESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFN 120
           E+S+GTYCPGMDPSPPPEYITCLGDLYSVAWMEDSE HNLKRE++ QQY++VK+RTSNFN
Sbjct: 246 ENSWGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSEAHNLKRESVKQQYKSVKQRTSNFN 305

Query: 121 NYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPP-NKLQPDQMGVVNQRDADLLFMWH 179
           NY  GSHVM+YG+T++ +EKLYLYQGFDPA+ NFPP N     +M VVNQRDA+L  +W 
Sbjct: 306 NYAMGSHVMQYGDTNITAEKLYLYQGFDPATVNFPPQNGRLETKMEVVNQRDAELFLLWQ 365

Query: 180 MYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPL 239
           MY+ +   SE K+++LKQI ET++HRKH+D S+++IGV+L+GP KGS +L SVRA G  L
Sbjct: 366 MYQRSNHQSENKTDILKQIAETVKHRKHIDGSVELIGVLLYGPGKGSSVLQSVRAPGSSL 425

Query: 240 VDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQ 299
           VDDW CLKSMVRVFETHCG+LTQYGMKHMRAFANICNSGVS+A MEE   AAC G     
Sbjct: 426 VDDWTCLKSMVRVFETHCGTLTQYGMKHMRAFANICNSGVSEASMEEACLAACEGYNAGL 485

Query: 300 WHPAIRGYSA 309
           +HP+ RGYSA
Sbjct: 486 FHPSNRGYSA 495

Asparagine-specific endopeptidase involved in the processing of vacuolar seed protein precursors into the mature forms.
Glycine max (taxid: 3847)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
297837155		534	F23N19.7 [Arabidopsis lyrata subsp. lyra	0.993	0.574	0.746	1e-138
351720847		495	vacuolar-processing enzyme precursor [Gl	1.0	0.624	0.732	1e-137
449459758		490	PREDICTED: vacuolar-processing enzyme-li	1.0	0.630	0.720	1e-137
15221556		486	vacuolar-processing enzyme beta-isozyme	0.993	0.631	0.730	1e-135
357476961		487	Vacuolar-processing enzyme [Medicago tru	0.996	0.632	0.717	1e-135
6630462		536	F23N19.7 [Arabidopsis thaliana]	0.993	0.572	0.730	1e-135
255537021		497	Vacuolar-processing enzyme precursor [Ri	1.0	0.621	0.722	1e-135
351723279		496	seed maturation protein PM40 precursor [	1.0	0.622	0.720	1e-134
224074697		470	predicted protein [Populus trichocarpa]	1.0	0.657	0.719	1e-134
9622221		489	asparaginyl endopeptidase [Sesamum indic	0.996	0.629	0.749	1e-133

>gi\|297837155\|ref\|XP_002886459.1\| F23N19.7 [Arabidopsis lyrata subsp. lyrata] gi\|297332300\|gb\|EFH62718.1\| F23N19.7 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/312 (74%), Positives = 267/312 (85%), Gaps = 5/312 (1%)

Query: 1   MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQ 60
           MPN P++YA +FI+ LKKKHA+ +YK MVIYVEACESGSIFEG+MPKDL+IYVTTASNAQ
Sbjct: 225 MPNTPHIYATDFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNAQ 284

Query: 61  ESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFN 120
           ESS+GTYCPGM+PSPP EYITCLGDLYSVAWMEDSETHNLK+ETI QQYQ VK RTSN+N
Sbjct: 285 ESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDSETHNLKKETIKQQYQTVKMRTSNYN 344

Query: 121 NYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQPD-QMGVVNQRDADLLFMWH 179
            Y+ GSHVMEYGN S+KSEKLY YQGFDPA+ N P  KL  + Q+GVVNQRDADLLF+WH
Sbjct: 345 TYSGGSHVMEYGNNSIKSEKLYFYQGFDPATVNLPLKKLPVNSQVGVVNQRDADLLFLWH 404

Query: 180 MYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPL 239
           MY+ + +GS KK + LK++TET RHRKHLDAS+++IG ILFGP     +LNSVR  GLPL
Sbjct: 405 MYRASEDGSRKKDDTLKELTETTRHRKHLDASVELIGTILFGP--AMNVLNSVREPGLPL 462

Query: 240 VDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSG-NELR 298
           VDDW+CLKSMVR FETHCGSLTQYGMKHMRAFAN+CN+GVS+ LMEE S AAC G NE R
Sbjct: 463 VDDWECLKSMVRAFETHCGSLTQYGMKHMRAFANVCNNGVSKELMEEASAAACGGYNEAR 522

Query: 299 -QWHPAIRGYSA 309
              HP++ GYSA
Sbjct: 523 YTLHPSVLGYSA 534

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|351720847\|ref\|NP_001236678.1\| vacuolar-processing enzyme precursor [Glycine max] gi\|1351410\|sp\|P49045.1\|VPE_SOYBN RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|511938\|dbj\|BAA06030.1\| cysteine proteinase [Glycine max]	Back alignment and taxonomy information

>gi\|449459758\|ref\|XP_004147613.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus] gi\|449506164\|ref\|XP_004162670.1\| PREDICTED: vacuolar-processing enzyme-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|15221556|ref|NP_176458.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana] gi|22002012|sp|Q39044.3|VPEB_ARATH RecName: Full=Vacuolar-processing enzyme beta-isozyme; AltName: Full=Beta-VPE; Flags: Precursor gi|14194097|gb|AAK56243.1|AF367254_1 At1g62710/F23N19_8 [Arabidopsis thaliana] gi|16323336|gb|AAL15381.1| At1g62710/F23N19_8 [Arabidopsis thaliana] gi|332195875|gb|AEE33996.1| vacuolar-processing enzyme beta-isozyme [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|357476961\|ref\|XP_003608766.1\| Vacuolar-processing enzyme [Medicago truncatula] gi\|355509821\|gb\|AES90963.1\| Vacuolar-processing enzyme [Medicago truncatula]	Back alignment and taxonomy information

>gi\|6630462\|gb\|AAF19550.1\|AC007190_18 F23N19.7 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255537021\|ref\|XP_002509577.1\| Vacuolar-processing enzyme precursor [Ricinus communis] gi\|1351409\|sp\|P49042.1\|VPE_RICCO RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|471162\|dbj\|BAA04225.1\| precursor of vacuolar processing enzyme [Ricinus communis] gi\|223549476\|gb\|EEF50964.1\| Vacuolar-processing enzyme precursor [Ricinus communis]	Back alignment and taxonomy information

>gi\|351723279\|ref\|NP_001238297.1\| seed maturation protein PM40 precursor [Glycine max] gi\|9622155\|gb\|AAF89646.1\|AF169019_1 seed maturation protein PM40 [Glycine max]	Back alignment and taxonomy information

>gi\|224074697\|ref\|XP_002304429.1\| predicted protein [Populus trichocarpa] gi\|222841861\|gb\|EEE79408.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|9622221\|gb\|AAF89679.1\| asparaginyl endopeptidase [Sesamum indicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		309
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.993	0.631	0.737	2.3e-126
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.993	0.621	0.573	5.2e-97
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.990	0.640	0.564	2.7e-93
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.941	0.624	0.422	1e-59
WB\|WBGene00012144		462	T28H10.3 [Caenorhabditis elega	0.786	0.525	0.340	1.1e-30
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.459	0.324	0.378	3.9e-28
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.812	0.579	0.308	5e-28
UNIPROTKB\|E1C958		431	LGMN "Uncharacterized protein"	0.805	0.577	0.299	6.4e-28
UNIPROTKB\|Q95M12		433	LGMN "Legumain" [Bos taurus (t	0.877	0.625	0.286	1e-27
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.809	0.574	0.317	2.8e-27

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1241 (441.9 bits), Expect = 2.3e-126, P = 2.3e-126
 Identities = 230/312 (73%), Positives = 265/312 (84%)

Query:     1 MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQ 60
             MPN P++YA +FI+ LKKKHA+ +YK MVIYVEACESGSIFEG+MPKDL+IYVTTASNAQ
Sbjct:   177 MPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNAQ 236

Query:    61 ESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFN 120
             ESS+GTYCPGM+PSPP EYITCLGDLYSVAWMEDSETHNLK+ETI QQY  VK RTSN+N
Sbjct:   237 ESSYGTYCPGMNPSPPSEYITCLGDLYSVAWMEDSETHNLKKETIKQQYHTVKMRTSNYN 296

Query:   121 NYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFPPNKLQ-PDQMGVVNQRDADLLFMWH 179
              Y+ GSHVMEYGN S+KSEKLYLYQGFDPA+ N P N+L    ++GVVNQRDADLLF+WH
Sbjct:   297 TYSGGSHVMEYGNNSIKSEKLYLYQGFDPATVNLPLNELPVKSKIGVVNQRDADLLFLWH 356

Query:   180 MYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPL 239
             MY+ + +GS KK + LK++TET RHRKHLDAS+++I  ILFGP     +LN VR  GLPL
Sbjct:   357 MYRTSEDGSRKKDDTLKELTETTRHRKHLDASVELIATILFGPTMN--VLNLVREPGLPL 414

Query:   240 VDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSG-NELR 298
             VDDW+CLKSMVRVFE HCGSLTQYGMKHMRAFAN+CN+GVS+ LMEE S AAC G +E R
Sbjct:   415 VDDWECLKSMVRVFEEHCGSLTQYGMKHMRAFANVCNNGVSKELMEEASTAACGGYSEAR 474

Query:   299 QW-HPAIRGYSA 309
                HP+I GYSA
Sbjct:   475 YTVHPSILGYSA 486

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00012144 T28H10.3 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C958 LGMN "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q95M12 LGMN "Legumain" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O24326	VPE2_PHAVU	3, ., 4, ., 2, 2, ., -	0.7096	1.0	0.6267	N/A	no
P49045	VPE_SOYBN	3, ., 4, ., 2, 2, ., -	0.7322	1.0	0.6242	yes	no
P49046	LEGU_CANEN	3, ., 4, ., 2, 2, ., 3, 4	0.7129	1.0	0.6505	N/A	no
Q39044	VPEB_ARATH	3, ., 4, ., 2, 2, ., -	0.7307	0.9935	0.6316	yes	no
P49042	VPE_RICCO	3, ., 4, ., 2, 2, ., -	0.7225	1.0	0.6217	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.921
3rd Layer	3.4.22.34	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh1_pm.C_scaffold_2000164	annotation not avaliable (534 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		309
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	6e-66

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  207 bits (528), Expect = 6e-66
 Identities = 78/147 (53%), Positives = 102/147 (69%), Gaps = 14/147 (9%)

Query: 1   MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQ 60
            P + Y+YA +  + LKK HA   YK +V YVEACESGS+FEG +PKD++IY TTA+NA 
Sbjct: 126 FPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEG-LPKDINIYATTAANAD 184

Query: 61  ESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFN 120
           ESS+GTYC      P PE  TCLGDL+SV WMEDS+ H+L +ET+ QQ++ VK RT    
Sbjct: 185 ESSWGTYC------PDPEDGTCLGDLFSVNWMEDSDDHDLSKETLEQQFELVKNRT---- 234

Query: 121 NYNSGSHVMEYGNTSVKSEKLYLYQGF 147
              +GSHVM+YG+ S+    + L+QG 
Sbjct: 235 ---TGSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		309
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	99.83
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	99.63
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	92.95

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2.1e-101  Score=726.92  Aligned_cols=305  Identities=55%  Similarity=0.992  Sum_probs=291.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCCCCCCCCcEEEEccCCCCccccccCCCCCCCCCCcccc
Q 021650            1 MPNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEGVMPKDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYI   80 (309)
Q Consensus         1 ~P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~~lp~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~   80 (309)
                      ||+++.|||+||+++|++||+.|+|++||||||||||||||||+||+|+|||||||||++|||||+|||+++|.||.++.
T Consensus       172 mP~~~~l~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~  251 (477)
T KOG1348|consen  172 MPTSPDLYAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYS  251 (477)
T ss_pred             cCCCcchhHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhhhcccccccccCHHHHHHHHHHhhcCCCCCCCCCCcccccCCcccccccccccccCCCCCCCC-CCCC
Q 021650           81 TCLGDLYSVAWMEDSETHNLKRETISQQYQAVKERTSNFNNYNSGSHVMEYGNTSVKSEKLYLYQGFDPASTNFP-PNKL  159 (309)
Q Consensus        81 tcLgD~fS~~wme~~~~~~~~~~tl~~~~~~v~~~t~~~~~~~~~Shv~~yGd~~~~~~~~~~f~g~~~~~~~~~-~~~~  159 (309)
                      |||||+|||+||||||.||+++|||.+||+.||+||+..  |+.|||||||||..|+++.|..|||.+|++.+++ +..+
T Consensus       252 tcLGDlySV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s--~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~~~s  329 (477)
T KOG1348|consen  252 TCLGDLYSVNWMEDSDVHDLKKETLHQQYHLVKKRTNTS--YSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLPASS  329 (477)
T ss_pred             cccccceeeeeeccCccccchHHHHHHHHHHHHHhcCCC--CCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCCccC
Confidence            999999999999999999999999999999999999854  7779999999999999999999999999998876 2333


Q ss_pred             CCCccccccccchhHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccCCCCC
Q 021650          160 QPDQMGVVNQRDADLLFMWHMYKNAAEGSEKKSEMLKQITETMRHRKHLDASIDMIGVILFGPDKGSRILNSVRARGLPL  239 (309)
Q Consensus       160 ~~~~~~~v~srDa~L~~L~~kl~~a~~~~~~k~~a~~eL~~~l~~R~~id~~v~~I~~~l~g~~~~~~vL~~~~~~g~~~  239 (309)
                      ..++++.+||||++|++||+|++++++++.++.+++++|.++++||++||++|..|+.++|+. .+..+|+.+|+.|+|+
T Consensus       330 ~~~~s~~~n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Pl  408 (477)
T KOG1348|consen  330 HKSPSGLTNQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPL  408 (477)
T ss_pred             cCCccccCCCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCc
Confidence            344567899999999999999999999998899999999999999999999999999999998 4457899999999999


Q ss_pred             cCccchHHHHHHHHhhhcCCccchhhhHHHHHHHHHhcCCCHHHHHHHHHHhcCCCCCCCCcccccCCC
Q 021650          240 VDDWQCLKSMVRVFETHCGSLTQYGMKHMRAFANICNSGVSQALMEETSEAACSGNELRQWHPAIRGYS  308 (309)
Q Consensus       240 v~d~dCyk~~V~~Fe~~Cg~l~~Y~lk~~~~faNLC~~g~~~~~i~~Ai~~~C~~~~~~~~~~~~~~~~  308 (309)
                      +|||+|+|.+|++|++|||+++||||||+|+|+||||.|++.++|..|+.++|..+...+|.+..+|||
T Consensus       409 vddw~C~k~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs  477 (477)
T KOG1348|consen  409 VDDWDCLKSAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS  477 (477)
T ss_pred             cchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		309
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 48/331 (14%), Positives = 89/331 (26%), Gaps = 96/331 (29%)

Query: 11  EFIDVLKKKHA-AKSYKGMVIYVEACESG--SIFEGVMPKDLDIYVTTASNAQESSFGTY 67
           E   ++  K A + + +     +   E       E V+  +    +        S   T 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM--------SPIKTE 101

Query: 68  CPGMDPSPPPE-YITCLGDLYSVAWMEDSET---HNLKRETISQQYQAVKERTSNFNNYN 123
                PS     YI     LY+     D++    +N+ R    Q Y  +++         
Sbjct: 102 Q--RQPSMMTRMYIEQRDRLYN-----DNQVFAKYNVSRL---QPYLKLRQALLELR--- 148

Query: 124 SGSHVMEYG----------NTSVKSEKLYLYQGF-----------DPAS---------TN 153
              +V+  G               S K+     F            P +           
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 154 FPPNKLQ-PDQMGVVNQRDADL------LFMWHMYKNAAEGSEKKSEMLKQITETMRHRK 206
             PN     D    +  R   +      L     Y+N          +L  +   +++ K
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---------LL--VLLNVQNAK 257

Query: 207 HLDASIDMIGVILFGPDKGSRILNSVRARGLPLVDDWQCLKSMVRVFETHCGSLTQYGMK 266
             +A         F  +   +IL  +  R   + D      +     + H  +LT   +K
Sbjct: 258 AWNA---------F--NLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 267 HMRAFANICNSGVSQALMEETSEAACSGNEL 297
            +       +    Q L  E      + N  
Sbjct: 305 SL--LLKYLDCRP-QDLPRE----VLTTNPR 328

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		309
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	97.6
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	94.56
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	93.43
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	92.02

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=97.60  E-value=7.5e-05  Score=69.12  Aligned_cols=108  Identities=11%  Similarity=0.096  Sum_probs=78.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCceEEEEeecccCcccCC----------------------CCC-------------
Q 021650            2 PNMPYVYAMEFIDVLKKKHAAKSYKGMVIYVEACESGSIFEG----------------------VMP-------------   46 (309)
Q Consensus         2 P~~~~l~a~dL~~~l~~M~~~~~Y~~lvfyiEaC~SgSmf~~----------------------~lp-------------   46 (309)
                      |.+..|..++|.+.|+.+   ++-+++++++++|+||++..+                      .+|             
T Consensus       105 p~D~~i~~~~l~~~l~~l---~~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~  181 (285)
T 3bij_A          105 LFDGELIDDELYALLGKF---AAGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANRE  181 (285)
T ss_dssp             CSSSEEEHHHHHHHHTTS---CSSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHH
T ss_pred             ecCCCccHHHHHHHHHhc---cCCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchh
Confidence            434456667888888665   235789999999999998762                      011             


Q ss_pred             ----------------CCCcEEEEccCCCCccccccCCCCCCCCCCccccccccchhhhhhhhhcccccccccCHHHHHH
Q 021650           47 ----------------KDLDIYVTTASNAQESSFGTYCPGMDPSPPPEYITCLGDLYSVAWMEDSETHNLKRETISQQYQ  110 (309)
Q Consensus        47 ----------------~~~niya~TAan~~EsS~~~~c~~~~~~~~~~~~tcLgD~fS~~wme~~~~~~~~~~tl~~~~~  110 (309)
                                      ...+++.++|+.++|.||-.-          .-     ..||.++++-+.... ...|+.++++
T Consensus       182 ~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aLl~~L~~~~-~~~s~~~l~~  245 (285)
T 3bij_A          182 FYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA----------FN-----GAFTGQLLRVWKNGL-YKGSYRSFHK  245 (285)
T ss_dssp             HHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS----------SS-----CHHHHHHHHHHGGGT-CCSCHHHHHH
T ss_pred             HHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc----------cC-----CHHHHHHHHHHhhCC-CCcCHHHHHH
Confidence                            234689999999999998521          12     369999998765322 4579999999


Q ss_pred             HHHHhhcCCCCCCCCCCcccccCC
Q 021650          111 AVKERTSNFNNYNSGSHVMEYGNT  134 (309)
Q Consensus       111 ~v~~~t~~~~~~~~~Shv~~yGd~  134 (309)
                      .|++++..      ..|++.||..
T Consensus       246 ~v~~~~~~------~Q~P~~~~~g  263 (285)
T 3bij_A          246 AIVRRMPP------DQTPNFFTAG  263 (285)
T ss_dssp             HHHHHSCT------TCCCEEEEEE
T ss_pred             HHHHhcCC------CCCcceeCCC
Confidence            99998762      6888888753

PyMOL of 3bij

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		309
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	84.62