Citrus Sinensis ID: 021675
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | 2.2.26 [Sep-21-2011] | |||||||
| Q96329 | 436 | Acyl-coenzyme A oxidase 4 | yes | no | 1.0 | 0.708 | 0.809 | 1e-153 | |
| Q20772 | 409 | Probable glutaryl-CoA deh | yes | no | 0.851 | 0.643 | 0.342 | 1e-42 | |
| Q8HXX8 | 438 | Glutaryl-CoA dehydrogenas | N/A | no | 0.802 | 0.566 | 0.362 | 6e-37 | |
| Q60759 | 438 | Glutaryl-CoA dehydrogenas | yes | no | 0.847 | 0.598 | 0.353 | 9e-37 | |
| Q92947 | 438 | Glutaryl-CoA dehydrogenas | yes | no | 0.802 | 0.566 | 0.366 | 1e-36 | |
| Q2KHZ9 | 438 | Glutaryl-CoA dehydrogenas | yes | no | 0.796 | 0.561 | 0.361 | 2e-36 | |
| P45857 | 379 | Acyl-CoA dehydrogenase OS | yes | no | 0.789 | 0.643 | 0.370 | 4e-35 | |
| P81140 | 408 | Glutaryl-CoA dehydrogenas | no | no | 0.796 | 0.602 | 0.364 | 2e-34 | |
| P52042 | 379 | Acyl-CoA dehydrogenase, s | yes | no | 0.825 | 0.672 | 0.334 | 4e-33 | |
| Q54R47 | 420 | Glutaryl-CoA dehydrogenas | no | no | 0.886 | 0.652 | 0.310 | 3e-32 |
| >sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1 | Back alignment and function desciption |
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Score = 540 bits (1390), Expect = e-153, Method: Compositional matrix adjust.
Identities = 250/309 (80%), Positives = 275/309 (88%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRY 309
G+YDMCHRY
Sbjct: 301 GIYDMCHRY 309
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Catalyzes the desaturation of short-chain acyl-CoAs to 2-trans-enoyl-CoAs. Active on butyryl-CoA (C4), hexanoyl-CoA (C6), and octanoyl-CoA (C8). Has no activity as acyl-CoA dehydrogenase or on crotonyl-CoA (an unsaturated C4:1 carbocyclic ester) or glutaryl-CoA (a dicarboxylic ester). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 6 |
| >sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1 | Back alignment and function description |
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| >sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2 | Back alignment and function description |
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| >sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1 | Back alignment and function description |
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| >sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 | Back alignment and function description |
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| >sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1 | Back alignment and function description |
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| >sp|P52042|ACDS_CLOAB Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=bcd PE=3 SV=1 | Back alignment and function description |
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| >sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| 255582668 | 440 | acyl-CoA dehydrogenase, putative [Ricinu | 1.0 | 0.702 | 0.851 | 1e-161 | |
| 359481157 | 439 | PREDICTED: acyl-coenzyme A oxidase 4, pe | 1.0 | 0.703 | 0.864 | 1e-160 | |
| 224139128 | 437 | predicted protein [Populus trichocarpa] | 0.980 | 0.693 | 0.867 | 1e-160 | |
| 402715756 | 437 | acyl-CoA oxidase 4 [Prunus persica] | 0.977 | 0.691 | 0.870 | 1e-160 | |
| 359481155 | 446 | PREDICTED: acyl-coenzyme A oxidase 4, pe | 0.990 | 0.686 | 0.862 | 1e-159 | |
| 351722526 | 400 | acyl-CoA oxidase [Glycine max] gi|156972 | 1.0 | 0.772 | 0.841 | 1e-157 | |
| 224087764 | 436 | predicted protein [Populus trichocarpa] | 0.977 | 0.692 | 0.838 | 1e-154 | |
| 47118098 | 440 | putative short-chain acyl-CoA oxidase [T | 0.987 | 0.693 | 0.832 | 1e-153 | |
| 356521028 | 421 | PREDICTED: acyl-coenzyme A oxidase 4, pe | 0.941 | 0.691 | 0.862 | 1e-152 | |
| 297819888 | 436 | acyl-CoA oxidase 4 [Arabidopsis lyrata s | 1.0 | 0.708 | 0.809 | 1e-152 |
| >gi|255582668|ref|XP_002532113.1| acyl-CoA dehydrogenase, putative [Ricinus communis] gi|223528216|gb|EEF30275.1| acyl-CoA dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust.
Identities = 264/310 (85%), Positives = 293/310 (94%), Gaps = 1/310 (0%)
Query: 1 MTIH-SSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEE 59
MTI+ SSK+QDD+D + +SSYFNLP L++S+AFPQATPAS FPPCASDY+Q DDLLT EE
Sbjct: 1 MTIYASSKNQDDLDHSQKSSYFNLPPLNVSIAFPQATPASIFPPCASDYFQLDDLLTPEE 60
Query: 60 QAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAA 119
QA+R+KVR+CMEKEIAPIM EYWEKA+FPFHVIPKLG LR+AGGTIKGYGCPG S+TG+A
Sbjct: 61 QAIRIKVRQCMEKEIAPIMTEYWEKAKFPFHVIPKLGTLRIAGGTIKGYGCPGLSLTGSA 120
Query: 120 IAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAY 179
+A AE+ARVDASCSTFILVHSSLAMLTIALCGSE QKQKYLPSLAQL+T+ACWALTEP Y
Sbjct: 121 VATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLSTVACWALTEPEY 180
Query: 180 GSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGL 239
GSDASAL TTA KVEGGWIL+GQKRWIGNSTFADVLV+FARNT+T QINGY+VKKDAPGL
Sbjct: 181 GSDASALKTTARKVEGGWILDGQKRWIGNSTFADVLVVFARNTSTEQINGYIVKKDAPGL 240
Query: 240 TVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGIS 299
T TKIENKIGLR+VQNGDILLK+VF+PDEDRLPGVNSFQDT+KVLAVSRVMVAWQPIGIS
Sbjct: 241 TATKIENKIGLRMVQNGDILLKQVFIPDEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGIS 300
Query: 300 MGVYDMCHRY 309
MG+YDMCHRY
Sbjct: 301 MGIYDMCHRY 310
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481157|ref|XP_003632582.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224139128|ref|XP_002322987.1| predicted protein [Populus trichocarpa] gi|222867617|gb|EEF04748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|402715756|gb|AFQ93696.1| acyl-CoA oxidase 4 [Prunus persica] | Back alignment and taxonomy information |
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| >gi|359481155|ref|XP_002264086.2| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 1 [Vitis vinifera] gi|296083170|emb|CBI22806.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|351722526|ref|NP_001236991.1| acyl-CoA oxidase [Glycine max] gi|156972244|gb|ABU98950.1| acyl-CoA oxidase [Glycine max] | Back alignment and taxonomy information |
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| >gi|224087764|ref|XP_002308225.1| predicted protein [Populus trichocarpa] gi|222854201|gb|EEE91748.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|47118098|gb|AAT11172.1| putative short-chain acyl-CoA oxidase [Tropaeolum majus] | Back alignment and taxonomy information |
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| >gi|356521028|ref|XP_003529160.1| PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297819888|ref|XP_002877827.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] gi|297323665|gb|EFH54086.1| acyl-CoA oxidase 4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| TAIR|locus:2074403 | 436 | ACX4 "acyl-CoA oxidase 4" [Ara | 1.0 | 0.708 | 0.809 | 2e-136 | |
| DICTYBASE|DDB_G0274585 | 430 | DDB_G0274585 "putative acyl-Co | 0.873 | 0.627 | 0.394 | 1.3e-50 | |
| WB|WBGene00010052 | 409 | F54D5.7 [Caenorhabditis elegan | 0.851 | 0.643 | 0.342 | 1.2e-40 | |
| UNIPROTKB|Q47V61 | 394 | gcdH "Glutaryl-CoA dehydrogena | 0.805 | 0.631 | 0.381 | 2.6e-40 | |
| TIGR_CMR|CPS_4667 | 394 | CPS_4667 "glutaryl-CoA dehydro | 0.805 | 0.631 | 0.381 | 2.6e-40 | |
| UNIPROTKB|Q4KKG4 | 393 | gcdH "Glutaryl-CoA dehydrogena | 0.831 | 0.653 | 0.347 | 1.3e-36 | |
| FB|FBgn0031824 | 419 | CG9547 [Drosophila melanogaste | 0.847 | 0.625 | 0.363 | 2.1e-36 | |
| ZFIN|ZDB-GENE-041010-117 | 427 | gcdhl "glutaryl-Coenzyme A deh | 0.838 | 0.606 | 0.354 | 3.5e-36 | |
| RGD|1308829 | 447 | Gcdh "glutaryl-CoA dehydrogena | 0.789 | 0.545 | 0.369 | 7.2e-36 | |
| MGI|MGI:104541 | 438 | Gcdh "glutaryl-Coenzyme A dehy | 0.847 | 0.598 | 0.353 | 9.2e-36 |
| TAIR|locus:2074403 ACX4 "acyl-CoA oxidase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
Identities = 250/309 (80%), Positives = 275/309 (88%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRY 309
G+YDMCHRY
Sbjct: 301 GIYDMCHRY 309
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| DICTYBASE|DDB_G0274585 DDB_G0274585 "putative acyl-CoA oxidase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_4667 CPS_4667 "glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|1308829 Gcdh "glutaryl-CoA dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:104541 Gcdh "glutaryl-Coenzyme A dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q96329 | ACOX4_ARATH | 1, ., 3, ., 3, ., 6 | 0.8090 | 1.0 | 0.7087 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_LG_XVI3692 | acyl-CoA oxidase (EC-1.3.3.6) (437 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_fgenesh4_pg.C_LG_II1951 | • | • | • | 0.925 | ||||||
 | fgenesh4_pm.C_LG_I000162 | • | • | • | 0.925 | ||||||
 | estExt_Genewise1_v1.C_LG_XIV3807 | • | • | • | 0.918 | ||||||
 | grail3.0024004101 | • | • | • | 0.917 | ||||||
 | estExt_Genewise1_v1.C_LG_X3923 | • | • | 0.908 | |||||||
 | estExt_fgenesh4_pg.C_LG_XVIII0682 | • | • | 0.907 | |||||||
 | estExt_fgenesh4_pg.C_LG_VIII0916 | • | 0.903 | ||||||||
 | grail3.0006050201 | • | 0.903 | ||||||||
 | gw1.X.5990.1 | • | 0.899 | ||||||||
 | gw1.II.706.1 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 309 | |||
| PLN02526 | 412 | PLN02526, PLN02526, acyl-coenzyme A oxidase | 0.0 | |
| cd01151 | 386 | cd01151, GCD, Glutaryl-CoA dehydrogenase | 1e-140 | |
| cd01158 | 373 | cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog | 4e-59 | |
| COG1960 | 393 | COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta | 2e-57 | |
| cd00567 | 327 | cd00567, ACAD, Acyl-CoA dehydrogenase | 8e-46 | |
| cd01156 | 376 | cd01156, IVD, Isovaleryl-CoA dehydrogenase | 7e-39 | |
| pfam02771 | 113 | pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, | 3e-34 | |
| cd01162 | 375 | cd01162, IBD, Isobutyryl-CoA dehydrogenase | 4e-32 | |
| cd01160 | 372 | cd01160, LCAD, Long chain acyl-CoA dehydrogenase | 1e-31 | |
| cd01161 | 409 | cd01161, VLCAD, Very long chain acyl-CoA dehydroge | 2e-30 | |
| cd01157 | 378 | cd01157, MCAD, Medium chain acyl-CoA dehydrogenase | 3e-26 | |
| PLN02519 | 404 | PLN02519, PLN02519, isovaleryl-CoA dehydrogenase | 3e-24 | |
| PTZ00461 | 410 | PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; | 8e-23 | |
| cd01152 | 380 | cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd | 2e-19 | |
| PRK12341 | 381 | PRK12341, PRK12341, putative acyl-CoA dehydrogenas | 2e-18 | |
| pfam02770 | 52 | pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, | 4e-17 | |
| TIGR03207 | 372 | TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co | 6e-16 | |
| cd01153 | 407 | cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena | 7e-14 | |
| cd01150 | 610 | cd01150, AXO, Peroxisomal acyl-CoA oxidase | 1e-13 | |
| PRK03354 | 380 | PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen | 4e-13 | |
| TIGR03204 | 395 | TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, | 7e-13 | |
| PRK13026 | 774 | PRK13026, PRK13026, acyl-CoA dehydrogenase; Review | 3e-09 | |
| cd01163 | 377 | cd01163, DszC, Dibenzothiophene (DBT) desulfurizat | 3e-09 | |
| PRK09463 | 777 | PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed | 5e-09 | |
| PLN02443 | 664 | PLN02443, PLN02443, acyl-coenzyme A oxidase | 3e-08 | |
| TIGR04022 | 391 | TIGR04022, sulfur_SfnB, sulfur acquisition oxidore | 8e-08 | |
| PLN02636 | 686 | PLN02636, PLN02636, acyl-coenzyme A oxidase | 1e-07 | |
| cd01155 | 394 | cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil | 1e-07 | |
| TIGR03203 | 378 | TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, | 3e-07 | |
| PTZ00456 | 622 | PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis | 1e-06 | |
| PTZ00460 | 646 | PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis | 1e-06 | |
| PTZ00457 | 520 | PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis | 5e-06 | |
| cd01154 | 418 | cd01154, AidB, Proteins involved in DNA damage res | 4e-05 | |
| PLN02312 | 680 | PLN02312, PLN02312, acyl-CoA oxidase | 8e-05 |
| >gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
Score = 612 bits (1579), Expect = 0.0
Identities = 248/283 (87%), Positives = 266/283 (93%)
Query: 27 DISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAE 86
D+SVAFPQATPAS FPP SDYYQFDDLLT EEQA+R +VRECMEKE+APIM EYWEKAE
Sbjct: 1 DVSVAFPQATPASIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAE 60
Query: 87 FPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLT 146
FPFH+IPKLG+L +AGGTIKGYGCPG S+T +AIA AE+ARVDASCSTFILVHSSLAMLT
Sbjct: 61 FPFHIIPKLGSLGIAGGTIKGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLT 120
Query: 147 IALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWI 206
IALCGSE QKQKYLPSLAQL+T+ACWALTEP YGSDAS+LNTTATKVEGGWIL GQKRWI
Sbjct: 121 IALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWI 180
Query: 207 GNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVP 266
GNSTFADVLVIFARNTTTNQING++VKK APGL TKIENKIGLR+VQNGDI+LK VFVP
Sbjct: 181 GNSTFADVLVIFARNTTTNQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVP 240
Query: 267 DEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309
DEDRLPGVNSFQDT+KVLAVSRVMVAWQPIGISMGVYDMCHRY
Sbjct: 241 DEDRLPGVNSFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRY 283
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Length = 412 |
| >gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase | Back alignment and domain information |
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| >gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases | Back alignment and domain information |
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| >gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 | Back alignment and domain information |
|---|
| >gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain | Back alignment and domain information |
|---|
| >gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 | Back alignment and domain information |
|---|
| >gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit | Back alignment and domain information |
|---|
| >gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C | Back alignment and domain information |
|---|
| >gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family | Back alignment and domain information |
|---|
| >gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
| >gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 | Back alignment and domain information |
|---|
| >gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit | Back alignment and domain information |
|---|
| >gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product | Back alignment and domain information |
|---|
| >gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| KOG0138 | 432 | consensus Glutaryl-CoA dehydrogenase [Amino acid t | 100.0 | |
| KOG0139 | 398 | consensus Short-chain acyl-CoA dehydrogenase [Lipi | 100.0 | |
| KOG0141 | 421 | consensus Isovaleryl-CoA dehydrogenase [Amino acid | 100.0 | |
| KOG0140 | 408 | consensus Medium-chain acyl-CoA dehydrogenase [Lip | 100.0 | |
| PLN02526 | 412 | acyl-coenzyme A oxidase | 100.0 | |
| PLN02636 | 686 | acyl-coenzyme A oxidase | 100.0 | |
| cd01151 | 386 | GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd | 100.0 | |
| PLN02312 | 680 | acyl-CoA oxidase | 100.0 | |
| PLN02519 | 404 | isovaleryl-CoA dehydrogenase | 100.0 | |
| cd01156 | 376 | IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d | 100.0 | |
| cd01162 | 375 | IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d | 100.0 | |
| PRK12341 | 381 | putative acyl-CoA dehydrogenase; Provisional | 100.0 | |
| PTZ00461 | 410 | isovaleryl-CoA dehydrogenase; Provisional | 100.0 | |
| cd01157 | 378 | MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar | 100.0 | |
| PRK03354 | 380 | crotonobetainyl-CoA dehydrogenase; Validated | 100.0 | |
| cd01160 | 372 | LCAD Long chain acyl-CoA dehydrogenase. LCAD is an | 100.0 | |
| TIGR03207 | 372 | cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen | 100.0 | |
| cd01161 | 409 | VLCAD Very long chain acyl-CoA dehydrogenase. VLCA | 100.0 | |
| TIGR03203 | 378 | pimD_small pimeloyl-CoA dehydrogenase, small subun | 100.0 | |
| cd01158 | 373 | SCAD_SBCAD Short chain acyl-CoA dehydrogenases and | 100.0 | |
| PRK09463 | 777 | fadE acyl-CoA dehydrogenase; Reviewed | 100.0 | |
| PRK13026 | 774 | acyl-CoA dehydrogenase; Reviewed | 100.0 | |
| TIGR03204 | 395 | pimC_large pimeloyl-CoA dehydrogenase, large subun | 100.0 | |
| cd01155 | 394 | ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE | 100.0 | |
| COG1960 | 393 | CaiA Acyl-CoA dehydrogenases [Lipid metabolism] | 100.0 | |
| cd01153 | 407 | ACAD_fadE5 Putative acyl-CoA dehydrogenases simila | 100.0 | |
| cd01163 | 377 | DszC Dibenzothiophene (DBT) desulfurization enzyme | 100.0 | |
| cd01152 | 380 | ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases | 100.0 | |
| KOG0137 | 634 | consensus Very-long-chain acyl-CoA dehydrogenase [ | 100.0 | |
| PLN02876 | 822 | acyl-CoA dehydrogenase | 100.0 | |
| PTZ00456 | 622 | acyl-CoA dehydrogenase; Provisional | 100.0 | |
| KOG0135 | 661 | consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid t | 100.0 | |
| cd01150 | 610 | AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl | 100.0 | |
| cd01154 | 418 | AidB Proteins involved in DNA damage response, sim | 100.0 | |
| PTZ00457 | 520 | acyl-CoA dehydrogenase; Provisional | 100.0 | |
| PTZ00460 | 646 | acyl-CoA dehydrogenase; Provisional | 100.0 | |
| PLN02443 | 664 | acyl-coenzyme A oxidase | 100.0 | |
| cd00567 | 327 | ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac | 100.0 | |
| cd01159 | 370 | NcnH Naphthocyclinone hydroxylase. Naphthocyclinon | 100.0 | |
| KOG1469 | 392 | consensus Predicted acyl-CoA dehydrogenase [Genera | 99.98 | |
| PRK11561 | 538 | isovaleryl CoA dehydrogenase; Provisional | 99.97 | |
| KOG0136 | 670 | consensus Acyl-CoA oxidase [Lipid transport and me | 99.92 | |
| PF02771 | 113 | Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal | 99.8 | |
| PF02770 | 52 | Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma | 99.66 | |
| TIGR02309 | 477 | HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy | 99.65 | |
| PF11794 | 264 | HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter | 98.63 | |
| TIGR02310 | 519 | HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy | 98.38 | |
| COG2368 | 493 | Aromatic ring hydroxylase [Secondary metabolites b | 98.22 | |
| PF14749 | 125 | Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; | 96.54 |
| >KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=388.03 Aligned_cols=287 Identities=39% Similarity=0.579 Sum_probs=274.2
Q ss_pred CccccccccCCCCCCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCccc
Q 021675 23 LPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAG 102 (309)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~ 102 (309)
.+.+.+...+++...++.+|+-..|++.+.+.|+++...+++.+|+++++++.|...++++...|+.++++++..+|+++
T Consensus 23 l~p~e~g~r~~s~~~~s~~P~f~qD~~~l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG 102 (432)
T KOG0138|consen 23 LAPTERGGRTQSQLSKSSRPEFWQDPLVLEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLG 102 (432)
T ss_pred CchhhhccccccccccccCCccccchhhhhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhcccccc
Confidence 45555555666667778888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCC
Q 021675 103 GTIKGYGCPGHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSD 182 (309)
Q Consensus 103 ~~~~~~GG~g~~~~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~ 182 (309)
..++.||+.|.|...+..+.+|+.|+|.+....+.+|+++++..|..+|+|+||+||||.+++|+.++||++|||+||||
T Consensus 103 ~tikGYGCaG~S~vaygl~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSd 182 (432)
T KOG0138|consen 103 PTIKGYGCAGVSSVAYGLLAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSD 182 (432)
T ss_pred CcccCcCCCchHHHHHHHHHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCE--EEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEE
Q 021675 183 ASALNTTATKVEGG--WILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILL 260 (309)
Q Consensus 183 ~~~~~t~a~~~~~~--~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f 260 (309)
+.+++|+|+++..+ |.|||+|.||+|+++||+++||||.+.++.+..|+|+++.+|++.-++.+|+++|++.++.|-+
T Consensus 183 psgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vvwAr~~t~n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilm 262 (432)
T KOG0138|consen 183 PSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVVWARCETDNKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILM 262 (432)
T ss_pred cccccceeEEccCCceEEECCeeeeecCCcccceEEEEEecccCCceeeEEEecCCCCCcCCCcCCeeeeeecccCceee
Confidence 99999999998876 9999999999999999999999999877899999999999999999999999999999999999
Q ss_pred ceeeeCCCCCcCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 261 KKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 261 ~~v~Vp~~~~l~~~~~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
|||+||++++|+...++.....+|+..|.++||.++|+++.+++.|.+|
T Consensus 263 d~V~VPeE~~LPg~~s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY 311 (432)
T KOG0138|consen 263 DGVEVPEENLLPGASSLQGPFGCLNNARYGIAWGALGASEFCLHTARQY 311 (432)
T ss_pred cCCcCChhhcCCCccccCCchhhhhhhhhheeehhchhHHHHHHHHHHH
Confidence 9999999999999889988899999999999999999999999999987
|
|
| >KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02526 acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
| >PLN02636 acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
| >cd01151 GCD Glutaryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PLN02312 acyl-CoA oxidase | Back alignment and domain information |
|---|
| >PLN02519 isovaleryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >cd01156 IVD Isovaleryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >cd01162 IBD Isobutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PRK12341 putative acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00461 isovaleryl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >cd01157 MCAD Medium chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PRK03354 crotonobetainyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >cd01160 LCAD Long chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >cd01161 VLCAD Very long chain acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit | Back alignment and domain information |
|---|
| >cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases | Back alignment and domain information |
|---|
| >PRK09463 fadE acyl-CoA dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK13026 acyl-CoA dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit | Back alignment and domain information |
|---|
| >cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 | Back alignment and domain information |
|---|
| >COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
| >cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 | Back alignment and domain information |
|---|
| >cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C | Back alignment and domain information |
|---|
| >cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 | Back alignment and domain information |
|---|
| >KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02876 acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PTZ00456 acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
| >cd01150 AXO Peroxisomal acyl-CoA oxidase | Back alignment and domain information |
|---|
| >cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product | Back alignment and domain information |
|---|
| >PTZ00457 acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PTZ00460 acyl-CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PLN02443 acyl-coenzyme A oxidase | Back alignment and domain information |
|---|
| >cd00567 ACAD Acyl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >cd01159 NcnH Naphthocyclinone hydroxylase | Back alignment and domain information |
|---|
| >KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK11561 isovaleryl CoA dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 | Back alignment and domain information |
|---|
| >PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 | Back alignment and domain information |
|---|
| >TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component | Back alignment and domain information |
|---|
| >PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] | Back alignment and domain information |
|---|
| >TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component | Back alignment and domain information |
|---|
| >COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
| >PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 309 | ||||
| 2ix5_A | 436 | Short Chain Specific Acyl-Coa Oxidase From Arabidop | 1e-154 | ||
| 2ix6_A | 449 | Short Chain Specific Acyl-Coa Oxidase From Arabidop | 1e-154 | ||
| 2eba_A | 385 | Crystal Structure Of The Putative Glutaryl-coa Dehy | 3e-43 | ||
| 3sf6_A | 403 | Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro | 6e-43 | ||
| 3gqt_A | 399 | Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro | 1e-38 | ||
| 3eom_A | 396 | 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy | 2e-38 | ||
| 3d6b_A | 395 | 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena | 2e-38 | ||
| 2r0m_A | 394 | The Effect Of A Glu370asp Mutation In Glutaryl-Coa | 7e-38 | ||
| 1sir_A | 394 | The Crystal Structure And Mechanism Of Human Glutar | 8e-38 | ||
| 1siq_A | 392 | The Crystal Structure And Mechanism Of Human Glutar | 9e-38 | ||
| 3swo_A | 399 | Crystal Structure Of A Glutaryl-Coa Dehydrogenase F | 2e-37 | ||
| 1ws9_A | 387 | Crystal Structure Of Project Id Tt0172 From Thermus | 6e-33 | ||
| 1jqi_A | 388 | Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd | 2e-31 | ||
| 2dvl_A | 372 | Crystal Structure Of Project Tt0160 From Thermus Th | 7e-30 | ||
| 2vig_A | 391 | Crystal Structure Of Human Short-Chain Acyl Coa Deh | 4e-29 | ||
| 3pfd_A | 393 | Crystal Structure Of An Acyl-Coa Dehydrogenase From | 1e-28 | ||
| 2jif_A | 404 | Structure Of Human Short-Branched Chain Acyl-Coa De | 1e-26 | ||
| 1ukw_A | 379 | Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog | 2e-25 | ||
| 3owa_A | 597 | Crystal Structure Of Acyl-Coa Dehydrogenase Complex | 3e-24 | ||
| 3nf4_A | 387 | Crystal Structure Of Acyl-Coa Dehydrogenase From My | 3e-23 | ||
| 2z1q_A | 577 | Crystal Structure Of Acyl Coa Dehydrogenase Length | 8e-23 | ||
| 1ivh_A | 394 | Structure Of Human Isovaleryl-coa Dehydrogenase At | 8e-22 | ||
| 1udy_A | 396 | Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta | 2e-20 | ||
| 3mpi_A | 397 | Structure Of The Glutaryl-Coenzyme A Dehydrogenase | 2e-20 | ||
| 1ege_A | 396 | Structure Of T255e, E376g Mutant Of Human Medium Ch | 3e-20 | ||
| 1buc_A | 383 | Three-Dimensional Structure Of Butyryl-Coa Dehydrog | 4e-20 | ||
| 2a1t_A | 421 | Structure Of The Human Mcad:etf E165betaa Complex L | 4e-20 | ||
| 1egd_A | 396 | Structure Of T255e, E376g Mutant Of Human Medium Ch | 5e-20 | ||
| 3mdd_A | 385 | Crystal Structures Of Medium Chain Acyl-Coa Dehydro | 1e-19 | ||
| 1rx0_A | 393 | Crystal Structure Of Isobutyryl-Coa Dehydrogenase C | 2e-19 | ||
| 3b96_A | 587 | Structural Basis For Substrate Fatty-Acyl Chain Spe | 4e-19 | ||
| 2uxw_A | 607 | Crystal Structure Of Human Very Long Chain Acyl-coa | 4e-19 | ||
| 2pg0_A | 385 | Crystal Structure Of Acyl-Coa Dehydrogenase From Ge | 5e-16 | ||
| 3r7k_A | 403 | Crystal Structure Of A Probable Acyl Coa Dehydrogen | 8e-12 | ||
| 1r2j_A | 366 | Fkbi For Biosynthesis Of Methoxymalonyl Extender Un | 3e-09 | ||
| 3oib_A | 403 | Crystal Structure Of A Putative Acyl-Coa Dehydrogen | 4e-09 | ||
| 2wbi_A | 428 | Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 | 2e-07 | ||
| 2fon_A | 683 | X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid | 4e-07 | ||
| 4doy_A | 437 | Crystal Structure Of Dibenzothiophene Desulfurizati | 5e-06 | ||
| 1w07_A | 659 | Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 65 | 8e-06 | ||
| 4hr3_A | 415 | Structure Of A Putative Acyl-Coa Dehydrogenase From | 2e-04 | ||
| 3m9v_A | 439 | X-Ray Structure Of A Kijd3 In Complex With Dtdp Len | 3e-04 |
| >pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 | Back alignment and structure |
|
| >pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 | Back alignment and structure |
| >pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 | Back alignment and structure |
| >pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 | Back alignment and structure |
| >pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 | Back alignment and structure |
| >pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 | Back alignment and structure |
| >pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 | Back alignment and structure |
| >pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 | Back alignment and structure |
| >pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 | Back alignment and structure |
| >pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 | Back alignment and structure |
| >pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 | Back alignment and structure |
| >pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 | Back alignment and structure |
| >pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 | Back alignment and structure |
| >pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 | Back alignment and structure |
| >pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 | Back alignment and structure |
| >pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 | Back alignment and structure |
| >pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 | Back alignment and structure |
| >pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 | Back alignment and structure |
| >pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 | Back alignment and structure |
| >pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 | Back alignment and structure |
| >pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 | Back alignment and structure |
| >pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 | Back alignment and structure |
| >pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 | Back alignment and structure |
| >pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 | Back alignment and structure |
| >pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 | Back alignment and structure |
| >pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 | Back alignment and structure |
| >pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 | Back alignment and structure |
| >pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 | Back alignment and structure |
| >pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 | Back alignment and structure |
| >pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 | Back alignment and structure |
| >pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 | Back alignment and structure |
| >pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 | Back alignment and structure |
| >pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 | Back alignment and structure |
| >pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 | Back alignment and structure |
| >pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 | Back alignment and structure |
| >pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 | Back alignment and structure |
| >pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 | Back alignment and structure |
| >pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 | Back alignment and structure |
| >pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 | Back alignment and structure |
| >pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1 Length = 659 | Back alignment and structure |
| >pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 | Back alignment and structure |
| >pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp Length = 439 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 | Back alignment and structure |
|---|
Score = 447 bits (1151), Expect = e-158
Identities = 250/309 (80%), Positives = 275/309 (88%)
Query: 1 MTIHSSKHQDDVDKNARSSYFNLPALDISVAFPQATPASKFPPCASDYYQFDDLLTSEEQ 60
M + SS + +K +SSYF+LP +++SVAFPQATPAS FPPC SDYY F+DLLT EEQ
Sbjct: 1 MAVLSSADRASNEKKVKSSYFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLLTPEEQ 60
Query: 61 AVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSVTGAAI 120
A+R KVRECMEKE+APIM EYWEKAEFPFH+ PKLGA+ VAGG+IKGYGCPG S+T AI
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITANAI 120
Query: 121 AIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYG 180
A AEIARVDASCSTFILVHSSL MLTIALCGSE QK+KYLPSLAQLNT+ACWALTEP G
Sbjct: 121 ATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNG 180
Query: 181 SDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLT 240
SDAS L TTATKVEGGW + GQKRWIGNSTFAD+L+IFARNTTTNQING++VKKDAPGL
Sbjct: 181 SDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLK 240
Query: 241 VTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
TKI NKIGLR+VQNGDILL+ VFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISM 300
Query: 301 GVYDMCHRY 309
G+YDMCHRY
Sbjct: 301 GIYDMCHRY 309
|
| >3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 | Back alignment and structure |
|---|
| >1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 | Back alignment and structure |
|---|
| >2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 | Back alignment and structure |
|---|
| >3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 | Back alignment and structure |
|---|
| >3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 | Back alignment and structure |
|---|
| >2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 | Back alignment and structure |
|---|
| >2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 | Back alignment and structure |
|---|
| >2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 | Back alignment and structure |
|---|
| >1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 | Back alignment and structure |
|---|
| >2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 | Back alignment and structure |
|---|
| >1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 | Back alignment and structure |
|---|
| >3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 | Back alignment and structure |
|---|
| >3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 | Back alignment and structure |
|---|
| >1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 | Back alignment and structure |
|---|
| >1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 | Back alignment and structure |
|---|
| >1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 | Back alignment and structure |
|---|
| >1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 | Back alignment and structure |
|---|
| >3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 | Back alignment and structure |
|---|
| >2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 | Back alignment and structure |
|---|
| >3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 | Back alignment and structure |
|---|
| >2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 | Back alignment and structure |
|---|
| >3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 | Back alignment and structure |
|---|
| >2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 | Back alignment and structure |
|---|
| >3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 | Back alignment and structure |
|---|
| >3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 | Back alignment and structure |
|---|
| >3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 | Back alignment and structure |
|---|
| >2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 | Back alignment and structure |
|---|
| >3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 | Back alignment and structure |
|---|
| >2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 | Back alignment and structure |
|---|
| >1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 | Back alignment and structure |
|---|
| >2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 | Back alignment and structure |
|---|
| >2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 | Back alignment and structure |
|---|
| >2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 | Back alignment and structure |
|---|
| >2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 | Back alignment and structure |
|---|
| >3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 | Back alignment and structure |
|---|
| >2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 | Back alignment and structure |
|---|
| >1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 | Back alignment and structure |
|---|
| >3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| 2ix5_A | 436 | Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, | 100.0 | |
| 3sf6_A | 403 | Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB | 100.0 | |
| 2d29_A | 387 | Acyl-COA dehydrogenase; structural genomics, NPPSF | 100.0 | |
| 3p4t_A | 403 | Putative acyl-COA dehydrogenase; ssgcid, structura | 100.0 | |
| 3swo_A | 399 | Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d | 100.0 | |
| 3ii9_A | 396 | Glutaryl-COA dehydrogenase; slipchip, microfluidic | 100.0 | |
| 2eba_A | 385 | Putative glutaryl-COA dehydrogenase; thermus therm | 100.0 | |
| 3pfd_A | 393 | Acyl-COA dehydrogenase; structural genomics, seatt | 100.0 | |
| 2jif_A | 404 | Short/branched chain specific acyl-COA dehydrogen; | 100.0 | |
| 1ukw_A | 379 | Acyl-COA dehydrogenase; oxidoreductase, riken stru | 100.0 | |
| 1buc_A | 383 | Butyryl-COA dehydrogenase; acyl-COA dehydrogenase | 100.0 | |
| 2vig_A | 391 | Short-chain specific acyl-COA dehydrogenase,; fatt | 100.0 | |
| 2dvl_A | 372 | Acyl-COA dehydrogenase; structural genomics, NPPSF | 100.0 | |
| 3nf4_A | 387 | Acyl-COA dehydrogenase; seattle structural genomic | 100.0 | |
| 3r7k_A | 403 | Probable acyl COA dehydrogenase; ssgcid, structura | 100.0 | |
| 1egd_A | 396 | Medium chain acyl-COA dehydrogenase; flavoprotein, | 100.0 | |
| 2pg0_A | 385 | Acyl-COA dehydrogenase; GK1316, geobacillus kausto | 100.0 | |
| 1rx0_A | 393 | Acyl-COA dehydrogenase family member 8, mitochondr | 100.0 | |
| 1siq_A | 392 | GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog | 100.0 | |
| 1ivh_A | 394 | Isovaleryl-COA dehydrogenase; oxidoreductase, acyl | 100.0 | |
| 3mpi_A | 397 | Glutaryl-COA dehydrogenase; alpha-beta fold, oxido | 100.0 | |
| 4hr3_A | 415 | Putative acyl-COA dehydrogenase; ssgcid, seattle s | 100.0 | |
| 3owa_A | 597 | Acyl-COA dehydrogenase; structural genomics, cente | 100.0 | |
| 1r2j_A | 366 | Protein FKBI; polyketide synthase, polyketide, acy | 100.0 | |
| 2z1q_A | 577 | Acyl-COA dehydrogenase; FAD, structural genomics, | 100.0 | |
| 2c12_A | 439 | Nitroalkane oxidase; oxidoreductase, flavoenzyme, | 100.0 | |
| 2uxw_A | 607 | VERY-long-chain specific acyl-COA dehydrogenase; f | 100.0 | |
| 3mkh_A | 438 | Nitroalkane oxidase; oxidoreductase flavoenzyme, a | 100.0 | |
| 2wbi_A | 428 | Acyl-COA dehydrogenase family member 11; human, ph | 100.0 | |
| 3m9v_A | 439 | FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO | 100.0 | |
| 3mxl_A | 395 | Nitrososynthase; flavin monooxygenase, acyl-COA de | 100.0 | |
| 2or0_A | 414 | Hydroxylase; APC7385, rhodococcus SP. RHA1, struct | 100.0 | |
| 2rfq_A | 394 | 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 | 100.0 | |
| 2jbr_A | 422 | P-hydroxyphenylacetate hydroxylase C2 oxygenase C; | 100.0 | |
| 1w07_A | 659 | Acyl-COA oxidase; oxidoreductase, peroxisomal beta | 100.0 | |
| 2ddh_A | 661 | Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl | 100.0 | |
| 3djl_A | 541 | Protein AIDB; alpha helix, beta-barrel, FAD, flavo | 100.0 | |
| 1u8v_A | 490 | Gamma-aminobutyrate metabolism dehydratase/isomera | 99.95 | |
| 2yyk_A | 481 | 4-hydroxyphenylacetate-3-hydroxylase; structurome, | 99.94 | |
| 3hwc_A | 515 | Chlorophenol-4-monooxygenase component 2; beta bar | 99.9 | |
| 4g5e_A | 517 | 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct | 99.71 |
| >2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=395.17 Aligned_cols=274 Identities=85% Similarity=1.367 Sum_probs=256.2
Q ss_pred CCCCCCCCCCCCcccCCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCccccccccCCCCCCCH
Q 021675 36 TPASKFPPCASDYYQFDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTIKGYGCPGHSV 115 (309)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~~~~GG~g~~~ 115 (309)
+.++.+|+.+.|++.|++.+++++.++++.+++|+++++.|...++++.+.+|.++|++|.++||+++.+++|||.|+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~pe~GG~G~~~ 115 (436)
T 2ix5_A 36 TPASTFPPCTSDYYHFNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSI 115 (436)
T ss_dssp CCTTSCCCCCSCTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCCSTTCCCCCH
T ss_pred CCCCCCCCcccchhhcCCCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCCCCCCCCCCH
Confidence 45577788888899998899999999999999999999988887777788999999999999999999777999999999
Q ss_pred HHHHHHHHHHHccCCcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCC
Q 021675 116 TGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEG 195 (309)
Q Consensus 116 ~~~~~v~e~la~~d~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~ 195 (309)
.+.+.++|+++++|++++..+.+|..++...|..+|+++||++|||++.+|+.++|+++|||++|||+.++.|+|++++|
T Consensus 116 ~~~~~v~eela~~~~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gd 195 (436)
T 2ix5_A 116 TANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEG 195 (436)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETT
T ss_pred HHHHHHHHHHHhhCccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCC
Confidence 99999999999999998877777876777889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeeeeecCCCCCCEEEEEEEeCCCCCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCCCC
Q 021675 196 GWILEGQKRWIGNSTFADVLVIFARNTTTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275 (309)
Q Consensus 196 ~~~lnG~K~~i~~a~~a~~~~V~a~~~~~~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~~~ 275 (309)
+|+|||+|+||+|+..||+++|+|++++++++.+|+||.+.|||++.+.|+++|++++++++|+|+||+||++++|+..+
T Consensus 196 g~vLnG~K~~is~a~~Ad~~lv~Ar~~~~~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~ 275 (436)
T 2ix5_A 196 GWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVN 275 (436)
T ss_dssp EEEEEEEEEEEETTTTCSEEEEEEEETTTSSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTCS
T ss_pred EEEEeeeccCCCCCcccCEEEEEEEECCCCcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCccc
Confidence 99999999999999999999999998755678999999999999999999999999999999999999999999998777
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 021675 276 SFQDTSKVLAVSRVMVAWQPIGISMGVYDMCHRY 309 (309)
Q Consensus 276 ~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~Y 309 (309)
++......+...|+.+++.++|+++++++.+++|
T Consensus 276 g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~y 309 (436)
T 2ix5_A 276 SFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRY 309 (436)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999987
|
| >3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* | Back alignment and structure |
|---|
| >3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* | Back alignment and structure |
|---|
| >3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A | Back alignment and structure |
|---|
| >2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
| >2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} | Back alignment and structure |
|---|
| >1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* | Back alignment and structure |
|---|
| >2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
| >3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} | Back alignment and structure |
|---|
| >1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* | Back alignment and structure |
|---|
| >2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
| >1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* | Back alignment and structure |
|---|
| >1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* | Back alignment and structure |
|---|
| >4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
| >3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} | Back alignment and structure |
|---|
| >1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* | Back alignment and structure |
|---|
| >2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* | Back alignment and structure |
|---|
| >3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} | Back alignment and structure |
|---|
| >2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} | Back alignment and structure |
|---|
| >3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} | Back alignment and structure |
|---|
| >2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
| >2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A | Back alignment and structure |
|---|
| >2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* | Back alignment and structure |
|---|
| >1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* | Back alignment and structure |
|---|
| >2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* | Back alignment and structure |
|---|
| >3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* | Back alignment and structure |
|---|
| >1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 | Back alignment and structure |
|---|
| >2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* | Back alignment and structure |
|---|
| >3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} | Back alignment and structure |
|---|
| >4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 309 | ||||
| d1ivha2 | 236 | e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM | 2e-46 | |
| d1rx0a2 | 231 | e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H | 4e-40 | |
| d1ukwa2 | 227 | e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge | 5e-40 | |
| d3mdea2 | 231 | e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge | 6e-39 | |
| d1siqa2 | 236 | e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH | 2e-38 | |
| d2d29a2 | 233 | e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus | 3e-38 | |
| d1jqia2 | 231 | e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do | 4e-36 | |
| d1buca2 | 232 | e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do | 6e-30 | |
| d1w07a3 | 271 | e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai | 6e-21 | |
| d2ddha3 | 267 | e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, | 4e-20 | |
| d1r2ja2 | 210 | e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro | 9e-17 | |
| d1u8va2 | 275 | e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase | 5e-15 | |
| d2c12a2 | 259 | e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox | 5e-14 |
| >d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acyl-CoA dehydrogenase NM domain-like superfamily: Acyl-CoA dehydrogenase NM domain-like family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains domain: Isovaleryl-coa dehydrogenase, NM domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 154 bits (390), Expect = 2e-46
Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 11/235 (4%)
Query: 52 DDL---LTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFH--VIPKLGALRVAGGTIK 106
DD L+ E++ +R + + +++ +AP E EF +LG L V G T
Sbjct: 2 DDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAP 61
Query: 107 GYGCP-GHSVTGAAIAIAEIARVDASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQ 165
G + + EI+R + HS+L + + G+E QK+KYLP L
Sbjct: 62 VQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLIS 121
Query: 166 LNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNSTFADVLVIFARNT--- 222
I A++EP GSD ++ A K +IL G K WI N ADVL+++A+
Sbjct: 122 GEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181
Query: 223 --TTNQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPGVN 275
+ I ++V+K PG + +K +K+G+R +++ + +P + L N
Sbjct: 182 VPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236
|
| >d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 | Back information, alignment and structure |
|---|
| >d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 | Back information, alignment and structure |
|---|
| >d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 | Back information, alignment and structure |
|---|
| >d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 | Back information, alignment and structure |
|---|
| >d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 | Back information, alignment and structure |
|---|
| >d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 | Back information, alignment and structure |
|---|
| >d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 | Back information, alignment and structure |
|---|
| >d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 | Back information, alignment and structure |
|---|
| >d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 | Back information, alignment and structure |
|---|
| >d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 | Back information, alignment and structure |
|---|
| >d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 | Back information, alignment and structure |
|---|
| >d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| d3mdea2 | 231 | Medium chain acyl-CoA dehydrogenase, NM domains {P | 100.0 | |
| d2d29a2 | 233 | Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI | 100.0 | |
| d1siqa2 | 236 | Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie | 100.0 | |
| d1ukwa2 | 227 | Medium chain acyl-CoA dehydrogenase, NM domains {T | 100.0 | |
| d1jqia2 | 231 | Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus | 100.0 | |
| d1ivha2 | 236 | Isovaleryl-coa dehydrogenase, NM domains {Human (H | 100.0 | |
| d1rx0a2 | 231 | Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) | 100.0 | |
| d1buca2 | 232 | Butyryl-CoA dehydrogenase, NM domains {Megasphaera | 100.0 | |
| d2c12a2 | 259 | Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 | 100.0 | |
| d1r2ja2 | 210 | Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 | 100.0 | |
| d2ddha3 | 267 | Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { | 100.0 | |
| d1w07a3 | 271 | Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale | 100.0 | |
| d1u8va2 | 275 | 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains | 99.89 |
| >d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acyl-CoA dehydrogenase NM domain-like superfamily: Acyl-CoA dehydrogenase NM domain-like family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains domain: Medium chain acyl-CoA dehydrogenase, NM domains species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=4.1e-48 Score=333.07 Aligned_cols=222 Identities=27% Similarity=0.483 Sum_probs=209.4
Q ss_pred CCcCCCHHHHHHHHHHHHHHHhhcCccHHHHHHhCCCCHHHHHHHHhCCcccccc-ccCCCCCCCHHHHHHHHHHHHccC
Q 021675 51 FDDLLTSEEQAVRMKVRECMEKEIAPIMAEYWEKAEFPFHVIPKLGALRVAGGTI-KGYGCPGHSVTGAAIAIAEIARVD 129 (309)
Q Consensus 51 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~-~~~GG~g~~~~~~~~v~e~la~~d 129 (309)
|++.|+++|+++++.+++|+++++.|.+.++++++.+|.++|+++.++||+++.+ ++|||.|.+....+.+.|++++.+
T Consensus 2 mdf~lseeq~~l~~~~r~f~~~~~~p~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l~~~~ 81 (231)
T d3mdea2 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGGLGLGIIDSCLITEELAYGC 81 (231)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCchhHHHHHHcCCCCHHHHHHHHHhhhccccccccccCccccccccccchhhhcccc
Confidence 7889999999999999999999999999999999999999999999999999988 999999999999999999999999
Q ss_pred CcchhHHHHhHHHHHHHHHhcCCHHHHHHHhHHHhcccceeEEEeecCCCCCCCCCCceEEEEeCCEEEEeeeeeeecCC
Q 021675 130 ASCSTFILVHSSLAMLTIALCGSEEQKQKYLPSLAQLNTIACWALTEPAYGSDASALNTTATKVEGGWILEGQKRWIGNS 209 (309)
Q Consensus 130 ~s~~~~~~~~~~~~~~~l~~~Gt~~qk~~~l~~~~~g~~~~~~a~tE~~~Gs~~~~~~t~a~~~~~~~~lnG~K~~i~~a 209 (309)
.+++..+..+. .+...|..+|+++||++|||++.+|+.++|+++|||++|||+.+++|+|++++|+|+|||+|+||+|+
T Consensus 82 ~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~l~~g~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~K~~vt~~ 160 (231)
T d3mdea2 82 TGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 160 (231)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHTTSCCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred ccccccccccc-ccchhhhhcCcccccccccchhcCCceEEEEEecCCCCCCCccCCEEEEEEECCEEEEEEEEEEeCCc
Confidence 88887776655 56778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCC------CCeEEEEEeCCCCCeeEecccCcccccccCceeEEEceeeeCCCCCcCC
Q 021675 210 TFADVLVIFARNTTT------NQINGYLVKKDAPGLTVTKIENKIGLRIVQNGDILLKKVFVPDEDRLPG 273 (309)
Q Consensus 210 ~~a~~~~V~a~~~~~------~~~~~flV~~~~pGv~v~~~~~~~Gl~~~~~~~l~f~~v~Vp~~~~l~~ 273 (309)
..|++++|+|+++.+ .++.+|+||++.|||++.+.++++|+++++++.|+|+||+||++++||+
T Consensus 161 ~~a~~~~~~a~t~~~~~~~~~~~~~~~lv~~d~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lG~ 230 (231)
T d3mdea2 161 GKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230 (231)
T ss_dssp TTEEEEEEEEECCCCTTSCHHHHEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGBSSC
T ss_pred hhccccceecccccccccccccceEEEEEeCCCCCeEEccCcccccCCCCCeEEEEEeeEEEcHHhEecC
Confidence 999999999998543 2578999999999999999999999999999999999999999999985
|
| >d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} | Back information, alignment and structure |
|---|
| >d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} | Back information, alignment and structure |
|---|
| >d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} | Back information, alignment and structure |
|---|
| >d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} | Back information, alignment and structure |
|---|